Citrus Sinensis ID: 007930
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 584 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TNH6 | 1325 | Nephrocystin-3 OS=Mus mus | yes | no | 0.614 | 0.270 | 0.237 | 4e-14 | |
| A0JM23 | 1311 | Nephrocystin-3 OS=Xenopus | yes | no | 0.625 | 0.278 | 0.237 | 6e-14 | |
| Q6AZT7 | 1300 | Nephrocystin-3 OS=Xenopus | N/A | no | 0.601 | 0.27 | 0.240 | 2e-13 | |
| Q7Z494 | 1330 | Nephrocystin-3 OS=Homo sa | yes | no | 0.580 | 0.254 | 0.239 | 9e-13 | |
| P0CI65 | 1303 | Nephrocystin-3 OS=Danio r | yes | no | 0.659 | 0.295 | 0.231 | 5e-10 | |
| Q05090 | 686 | Kinesin light chain OS=St | no | no | 0.208 | 0.177 | 0.338 | 5e-09 | |
| Q5R581 | 560 | Kinesin light chain 1 OS= | yes | no | 0.186 | 0.194 | 0.330 | 2e-07 | |
| Q07866 | 573 | Kinesin light chain 1 OS= | no | no | 0.186 | 0.190 | 0.330 | 2e-07 | |
| P37285 | 560 | Kinesin light chain 1 OS= | no | no | 0.186 | 0.194 | 0.330 | 2e-07 | |
| Q9H0B6 | 622 | Kinesin light chain 2 OS= | no | no | 0.190 | 0.178 | 0.301 | 1e-06 |
| >sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 32/391 (8%)
Query: 141 SIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200
S++ + +G + L Y LG +GLL ++V + LEI+ AL PRVA
Sbjct: 921 SLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVA 980
Query: 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHR-----EHGHSASLEEAADRRLMALVYEAK 255
++ LA ++Q +F +AE L K+ LEI +H H+A EA +A +Y +
Sbjct: 981 QSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEA-----LATLYHKQ 1035
Query: 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKA 314
YE A EH S+++ + G++Y +L R ++ L + +
Sbjct: 1036 NKYEQA-EHFRKKSVIIRQQATRRK--------GSLYGFALLR--------RRALQLEEL 1078
Query: 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEIS 374
T G+D A L LY+ L ++ + + +L + + P + A L ++
Sbjct: 1079 TLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSLEMRERVLGPDHP-DCAQSLNNLA 1137
Query: 375 AIYEALNEHEEALKLLQKAMKLLED--TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432
A+ ++E+A +L ++A+ + P H ++A + ++ G+ +A +E
Sbjct: 1138 ALCNEKKQYEKAEELYERALDIRRRALAPD-HPSLAYTVKHLAILYKKTGKVDKAVPLYE 1196
Query: 433 SAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492
AV + S K L + + Q+ + +EA L+E A + E G H
Sbjct: 1197 LAVEIRQKSFGPKHPSVATALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVG 1256
Query: 493 GVYSNLAATYDALGRVEDAIEILEYILKVRE 523
NLA G E A E+ + ++++E
Sbjct: 1257 ETLKNLAVLSYEEGNFEKAAELYKRAMEIKE 1287
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Mus musculus (taxid: 10090) |
| >sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 178/395 (45%), Gaps = 30/395 (7%)
Query: 133 EAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192
+A+ ERS E G ++ + Y LG +GLL ++V + LEI+ AL
Sbjct: 908 DALKQYERSCE------GEEKMTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETAL 961
Query: 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVY 252
P VA++ LA ++Q+ +F AE L K+ LEI S + A + +A++Y
Sbjct: 962 DPDHPSVAQSLHQLAGVYVQSKKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLY 1021
Query: 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTV 311
+ + +E A E L S+ + + G++Y +L R ++ L +
Sbjct: 1022 QKQNKFEQA-EQLRKKSLKIRQKSARRK--------GSMYGFALLR--------RRALQL 1064
Query: 312 FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371
+ T G+D A L LYY L ++++ + +L + + A P + A +
Sbjct: 1065 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHP-DCAQSIN 1123
Query: 372 EISAIYEALNEHEEALKLLQKAMKLLED--TPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429
++A+Y ++++A +L ++A+ + +P H ++A + V+ G+ +A
Sbjct: 1124 NLAALYNEKKQYDKAEELYERALDIRRRALSPD-HPSLAYTVKHLAVLYKRKGKLDKAVP 1182
Query: 430 SFESAV-VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488
+E AV ++ ++ G + ++N L C Q+ + EA+ L+E A + E G H
Sbjct: 1183 LYELAVEIRQKSFGPKHPSVATALVNLAVLYC-QMKKQAEASPLYERAMKIYEDSLGRMH 1241
Query: 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523
NLA G E A E+ + ++++E
Sbjct: 1242 PRVGETLKNLAVLRYEEGDFEKAAELYKRAMEIKE 1276
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Xenopus tropicalis (taxid: 8364) |
| >sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 171/378 (45%), Gaps = 27/378 (7%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
Y LG +GLL ++V + LEI+ AL P VA++ LA ++Q+ +F AE
Sbjct: 919 YETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQSKKFGNAE 978
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280
L K+ LEI S L A + +A++Y+ + +E A E L S+ + +
Sbjct: 979 QLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQA-EQLRKKSLKIRQKSARRK 1037
Query: 281 VAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339
G++Y +L R ++ L + + T G+D A L LYY
Sbjct: 1038 --------GSMYGFALLR--------RRALQLEELTLGKDTSDNARTLNELGVLYYLQNN 1081
Query: 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
L ++++ + +L + + A P + A + ++A+Y ++++A +L ++A+ +
Sbjct: 1082 LETAETFLKRSLEMRERVLGADHP-DCAQSINNLAALYNEKKQYDKAEELYERALDIRRR 1140
Query: 400 --TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIVLNQM 456
+P H ++A + V+ G+ +A +E AV ++ ++ G + ++N
Sbjct: 1141 ALSPD-HPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLA 1199
Query: 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILE 516
L C Q+ + ++A L+E A + E G H NLA G E A E+ +
Sbjct: 1200 VLYC-QMKKQDDALPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDYEKAAELYK 1258
Query: 517 YILKVREEK---LGTANP 531
++++E + LG P
Sbjct: 1259 RAMEIKETETSVLGAKAP 1276
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Xenopus laevis (taxid: 8355) |
| >sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 32/371 (8%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
Y LG +GLL +++ + LEI+ AL PRVA++ LA ++Q +F AE
Sbjct: 946 YETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAE 1005
Query: 221 NLCKKILEIHR-----EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275
L K+ LEI +H ++A EA +A +Y+ + YE A EH S +
Sbjct: 1006 QLYKQALEISENAYGADHPYTARELEA-----LATLYQKQNKYEQA-EHFRKKSFKIHQK 1059
Query: 276 GQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
+ + GN+Y +L R ++ L + + T G+D A L LY
Sbjct: 1060 AIKKK--------GNLYGFALLR--------RRALQLEELTLGKDTPDNARTLNELGVLY 1103
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
Y L + + + +L + + P + A L ++A+ ++++A +L ++A+
Sbjct: 1104 YLQNNLETADQFLKRSLEMRERVLGPDHP-DCAQSLNNLAALCNEKKQYDKAEELYERAL 1162
Query: 395 KLLED--TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452
+ P H ++A + ++ +G+ +A +E AV + S K
Sbjct: 1163 DIRRRALAPD-HPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATA 1221
Query: 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512
L + + Q+ + EA L+E A + E G H NLA G E A
Sbjct: 1222 LVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEKAA 1281
Query: 513 EILEYILKVRE 523
E+ + ++++E
Sbjct: 1282 ELYKRAMEIKE 1292
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Homo sapiens (taxid: 9606) |
| >sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 186/424 (43%), Gaps = 39/424 (9%)
Query: 109 GQELELVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDIGKGSDRALAKFSG-YMQLGD 166
G EL+ + CS+ + +A+ E++ E S++++++ + Y LG
Sbjct: 877 GHFSELLAYWQFVGKDKCSMATEYFDALKEFEKTCE-------SEQSMSRLANLYETLGR 929
Query: 167 TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226
+GLL ++V + LEI+ AL P VA++ LA ++ +F AE L K+
Sbjct: 930 FLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVHWRKFGNAEQLYKQA 989
Query: 227 LEI-HREHG--HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAA 283
+EI +G HS E ++L+Y+ + YE A E L S+ + +
Sbjct: 990 MEICENAYGPEHSTVARELDS---LSLLYQKQNKYEQA-EKLRKRSVKIRQKTARQK--- 1042
Query: 284 IDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342
G++Y +L + ++ L + + T G+D A L LYY L
Sbjct: 1043 -----GHMYGFALLK--------RRALQLEELTLGKDSTDCAKTLNELGVLYYLQNNLDA 1089
Query: 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT-- 400
+K + +L + + P+ A L ++A++ E+E A +L ++A+ + +
Sbjct: 1090 AKLFLTRSLEMRQRVLGPDHPD-CAQSLNNLAALHSERKEYESAEELYERALDIRKRALA 1148
Query: 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIVLNQMGLA 459
P H ++A + ++ G+ +A +E A+ ++ ++ G + ++N L
Sbjct: 1149 PD-HPSLAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLY 1207
Query: 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519
C QL + ++A L+E A V E G H NLA G E A E+ + +
Sbjct: 1208 C-QLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEGDFEKAAELYKRAM 1266
Query: 520 KVRE 523
+++E
Sbjct: 1267 EIKE 1270
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Danio rerio (taxid: 7955) |
| >sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMG 172
+ +L+ LA +Y G+++EA P+ +R++E+ + G D +AK + L C + G
Sbjct: 298 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL--LCQNQG 355
Query: 173 LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL-EIH- 230
+ W Y+ LEI + LG DP VA+T LA A+++ ++ AE L K++L H
Sbjct: 356 KYEEVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGKYKAAETLYKQVLTRAHE 415
Query: 231 REHGHSA 237
RE G SA
Sbjct: 416 REFGLSA 422
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Strongylocentrotus purpuratus (taxid: 7668) |
| >sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMGLLD 175
+L+ LA +Y G+++EA P+ +R++E+ + G D +AK + L C + G +
Sbjct: 299 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL--LCQNQGKYE 356
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
+ Y+ LEI LG DP VA+T LA +++ +F +AE L K+IL
Sbjct: 357 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 408
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Pongo abelii (taxid: 9601) |
| >sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMGLLD 175
+L+ LA +Y G+++EA P+ +R++E+ + G D +AK + L C + G +
Sbjct: 299 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL--LCQNQGKYE 356
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
+ Y+ LEI LG DP VA+T LA +++ +F +AE L K+IL
Sbjct: 357 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 408
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN=Klc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMGLLD 175
+L+ LA +Y G+++EA P+ +R++E+ + G D +AK + L C + G +
Sbjct: 299 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL--LCQNQGKYE 356
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
+ Y+ LEI LG DP VA+T LA +++ +F +AE L K+IL
Sbjct: 357 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 408
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD--IGKGSDRALAKFSGYMQLGDTCSSM 171
+ +L+ LA +Y G+++EA P+ +R++E+ + +GK + S L C +
Sbjct: 281 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALL---CQNQ 337
Query: 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
G + + Y LEI LG DP VA+T LA +++ ++ +AE L K+IL
Sbjct: 338 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 393
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 584 | ||||||
| 225470942 | 596 | PREDICTED: nephrocystin-3 [Vitis vinifer | 0.996 | 0.976 | 0.744 | 0.0 | |
| 449462511 | 593 | PREDICTED: nephrocystin-3-like [Cucumis | 0.994 | 0.979 | 0.715 | 0.0 | |
| 255555655 | 605 | kinesin light chain, putative [Ricinus c | 0.998 | 0.963 | 0.700 | 0.0 | |
| 225426234 | 591 | PREDICTED: nephrocystin-3 [Vitis vinifer | 0.984 | 0.972 | 0.710 | 0.0 | |
| 356523649 | 578 | PREDICTED: nephrocystin-3-like [Glycine | 0.897 | 0.906 | 0.756 | 0.0 | |
| 356513265 | 563 | PREDICTED: nephrocystin-3-like [Glycine | 0.960 | 0.996 | 0.700 | 0.0 | |
| 224130572 | 568 | predicted protein [Populus trichocarpa] | 0.965 | 0.992 | 0.719 | 0.0 | |
| 15236944 | 609 | tetratricopeptide repeat domain-containi | 0.989 | 0.949 | 0.675 | 0.0 | |
| 21554384 | 606 | putative kinesin light chain [Arabidopsi | 0.989 | 0.953 | 0.675 | 0.0 | |
| 365222860 | 605 | Hop-interacting protein THI007 [Solanum | 1.0 | 0.965 | 0.682 | 0.0 |
| >gi|225470942|ref|XP_002264247.1| PREDICTED: nephrocystin-3 [Vitis vinifera] gi|297745492|emb|CBI40572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/598 (74%), Positives = 506/598 (84%), Gaps = 16/598 (2%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKRF--------------PSPSP 46
MP L+SVKTP +TPL I +P +N + R+ SP +R PSP
Sbjct: 1 MPGLVSVKTPRASTPLRIFLP--ENSQCDGSRNGSPQVQRRMASPSPSTSTSRARPSPDR 58
Query: 47 SNSRAKRTSEKVTIDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFS 106
+ R K T EK TIDESSLDNPDLGPFLLK+AR+TI+SGD+P+KALD+AIRA++SFE S
Sbjct: 59 GSGRKKTTPEKTTIDESSLDNPDLGPFLLKMARDTIASGDSPSKALDFAIRAARSFESCS 118
Query: 107 GSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGD 166
GS L+L M LH++AAI+CSLGRFEEAVPVLER+I V D+ KGSD ALA FSGYMQLGD
Sbjct: 119 GSEPSLDLAMCLHVVAAIHCSLGRFEEAVPVLERAIRVPDLAKGSDHALAMFSGYMQLGD 178
Query: 167 TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226
+ S +G LDRSV YESGL+IQ E LG+SDPRVAETCRYLAE H+QA+QFDEAENLCKK
Sbjct: 179 SHSMLGQLDRSVSAYESGLKIQTETLGESDPRVAETCRYLAEVHVQALQFDEAENLCKKT 238
Query: 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286
LEIHREH ASLEEAADRRLMAL+ EAK DYE+ALEHLVLASM MIANGQ+N+VAAIDV
Sbjct: 239 LEIHREHSEPASLEEAADRRLMALICEAKRDYEAALEHLVLASMAMIANGQDNDVAAIDV 298
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
SIG+IY+SLCRFDEA+FSYQK LTVFK+T+G++H SVAS+FIRLADLY++ GKLRESKSY
Sbjct: 299 SIGDIYLSLCRFDEAVFSYQKALTVFKSTKGDNHPSVASVFIRLADLYFKTGKLRESKSY 358
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406
CENALR+ AKP P T PEEIANGLTEISAIYEA+NE EEAL+LLQKAMKLLEDTP + ST
Sbjct: 359 CENALRIYAKPVPGTTPEEIANGLTEISAIYEAVNEPEEALRLLQKAMKLLEDTPAHRST 418
Query: 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466
I GIEAQMGVM Y+VGRYGEAR+SFES + KL+ASGE KS+FFGIVLNQMGLAC+QLY+I
Sbjct: 419 ITGIEAQMGVMFYMVGRYGEARASFESVIAKLQASGERKSSFFGIVLNQMGLACVQLYKI 478
Query: 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526
+EA ELFEEARG+LEQECG HLDTLGVYSNLAATYDA+GRVEDAIEILEYILKVREEKL
Sbjct: 479 DEAAELFEEARGILEQECGPYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKVREEKL 538
Query: 527 GTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGFRT 584
GTANPD+DDEK+RL ELLK+ GR RNRKGKSLENLL SN +KKE TKR SGFGF+T
Sbjct: 539 GTANPDVDDEKKRLTELLKQAGRVRNRKGKSLENLLVSNPQGMKKEGTKRWSGFGFKT 596
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462511|ref|XP_004148984.1| PREDICTED: nephrocystin-3-like [Cucumis sativus] gi|449518869|ref|XP_004166458.1| PREDICTED: nephrocystin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/594 (71%), Positives = 496/594 (83%), Gaps = 13/594 (2%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKR------FPSPSPSNSRAKRT 54
MP L+SVKTPP+ PL I +P + +N R PSPL K+ S N + K
Sbjct: 1 MPGLVSVKTPPDAPPLRISVP--ETPPASNHRPPSPLTKKQPSPSPSRSKPSPNGKKKLQ 58
Query: 55 SEKVT----IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQ 110
E T +SSLDNPDLGPFLLKLAR+TI+SGD PNKALDYAIRASKSFER + G+
Sbjct: 59 PESPTSAQFPPDSSLDNPDLGPFLLKLARDTIASGDGPNKALDYAIRASKSFERCAVDGE 118
Query: 111 -ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCS 169
L+L MSLH+LAAIYCSLGRFEEAVPVLE++I+V +IG+G D ALA FSG+MQLGDT S
Sbjct: 119 PSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIQVPEIGRGPDHALAAFSGHMQLGDTYS 178
Query: 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
+G ++RS+ CYE GL+IQIEALG++DPRV ETCRYL+EAH+QAMQFD AE LCKK LEI
Sbjct: 179 MLGQIERSIGCYEEGLKIQIEALGETDPRVGETCRYLSEAHVQAMQFDRAEQLCKKTLEI 238
Query: 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289
H H ASLEEAADRRLMAL+ EAK DYESALEHLVLASM MIANGQ++EVAAIDVSIG
Sbjct: 239 HHAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDSEVAAIDVSIG 298
Query: 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
NIYMSLCRFDEA+FSYQK LTVFKA++G++H VAS+FIRLADLY+R GKLRESKSYCEN
Sbjct: 299 NIYMSLCRFDEAVFSYQKALTVFKASKGDNHPLVASVFIRLADLYHRTGKLRESKSYCEN 358
Query: 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409
A+R+ +KP P T+PEEIA GLTEISAIYE+++E EEALKLLQKAMK+LED PG STIAG
Sbjct: 359 AMRIYSKPVPGTSPEEIAGGLTEISAIYESVDEPEEALKLLQKAMKMLEDKPGQQSTIAG 418
Query: 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469
IEA+MGVM Y+VGRY +AR++FESA+ KLRA+GE KSAFFG+VLNQMGLAC+QL++I+EA
Sbjct: 419 IEARMGVMFYMVGRYEDARNAFESAISKLRATGERKSAFFGVVLNQMGLACVQLFKIDEA 478
Query: 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529
ELFEEARG+LEQECG+CH DT+GVYSNLAATYDA+GRV+DAIEILE +LK+REEKLG A
Sbjct: 479 AELFEEARGILEQECGNCHQDTIGVYSNLAATYDAMGRVDDAIEILESVLKLREEKLGIA 538
Query: 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGFR 583
NPD +DEK RLAELLKE GR RNRK KSLENL+D N+ + KKE TK+ SG GFR
Sbjct: 539 NPDFEDEKRRLAELLKEAGRTRNRKAKSLENLIDPNSRKTKKEATKKWSGLGFR 592
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555655|ref|XP_002518863.1| kinesin light chain, putative [Ricinus communis] gi|223541850|gb|EEF43396.1| kinesin light chain, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/604 (70%), Positives = 494/604 (81%), Gaps = 21/604 (3%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGS-----------TNNLRSPSPLRKRFPSPSPSNS 49
MP L+SVKTPP+ PL I +P IQ + ++ LR+P+P +K +
Sbjct: 1 MPGLVSVKTPPDAPPLRISVPEIQPQTQAQTPPQARPESSVLRTPTPNKKPPSPSPSRSK 60
Query: 50 RAKRTSEK---------VTIDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASK 100
+ S K + + ++SLDNPDLGPFLLKLAR+TI+SG+ P+KALDYAIRASK
Sbjct: 61 PSPTRSAKKPPPDSLNPLLLADASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASK 120
Query: 101 SFERFSGSGQ-ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159
SFER + G+ L+LVMSLH+LAAIYCSLGRF+EAVP LER+I V D+ +G D ALA FS
Sbjct: 121 SFERCAVDGEPSLDLVMSLHVLAAIYCSLGRFDEAVPALERAITVPDLSRGMDHALAAFS 180
Query: 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219
GYMQLGDT S +G +D+S+ CYE GL+IQI+ALGD+DPRV ETCRYLAEAH+QAM FD+A
Sbjct: 181 GYMQLGDTYSMLGQVDKSIGCYEDGLKIQIDALGDTDPRVGETCRYLAEAHVQAMNFDKA 240
Query: 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279
+ LCKK LEIHR H AS+EEAADRRLMAL+ EAK DYESALEHLVLASM MIANGQ+N
Sbjct: 241 QELCKKTLEIHRAHSEPASIEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDN 300
Query: 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339
EVAAIDVSIGNIYMSLCRFDEA+FSYQK LTVFK+++G++H SVAS+F+RLADLY R GK
Sbjct: 301 EVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYNRTGK 360
Query: 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
LRESKSYCENALR+ AKP P T EEIA GLTEISAIYE+ +E EEALKLLQKAMKLLED
Sbjct: 361 LRESKSYCENALRIYAKPVPGTTAEEIAGGLTEISAIYESADEPEEALKLLQKAMKLLED 420
Query: 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459
PG STIAGIEA+MGVM Y+VGRY EAR+SFESAV KLRASGE KSAFFG+VLNQMGLA
Sbjct: 421 KPGQQSTIAGIEARMGVMFYMVGRYEEARNSFESAVTKLRASGERKSAFFGVVLNQMGLA 480
Query: 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519
C+QL++I+EA ELFEEAR +LEQECG C+ DT+GVYSNLAATYDA+GRV+DAIEILEY+L
Sbjct: 481 CVQLFKIDEAAELFEEARAILEQECGPCNQDTIGVYSNLAATYDAMGRVDDAIEILEYVL 540
Query: 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSG 579
K+REEKLG ANPD DEK RLAELLKE GRARN+K KSLE+L+D+N+ R KKE TKR G
Sbjct: 541 KLREEKLGIANPDFVDEKSRLAELLKEAGRARNKKAKSLESLIDNNSKRTKKESTKRWPG 600
Query: 580 FGFR 583
GFR
Sbjct: 601 LGFR 604
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426234|ref|XP_002263593.1| PREDICTED: nephrocystin-3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/597 (71%), Positives = 497/597 (83%), Gaps = 22/597 (3%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKRFPSPSPSN------------ 48
MP L+SVKTPP+ +PL I + + GS + R+ +F S +P
Sbjct: 1 MPGLVSVKTPPDASPLTISV--TEAGSVSESRN-----SKFASSTPKKTPSPSTSRSRPS 53
Query: 49 -SRAKRTSEKVTIDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG 107
R K+ E +DESSLDNPDLGPFLLKLAR+ I+SGD PNKAL+YA+RASKSFER +
Sbjct: 54 PDRKKKPPESPVLDESSLDNPDLGPFLLKLARDAIASGDGPNKALEYALRASKSFERCAA 113
Query: 108 SGQ-ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGD 166
G+ L+L MSLH++AAIYCSLGRFEEA+PVLER+I V ++ +G+D ALA FSGYMQLGD
Sbjct: 114 EGEPSLDLAMSLHVVAAIYCSLGRFEEAIPVLERAIGVPEVARGADHALAAFSGYMQLGD 173
Query: 167 TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226
T S +G ++RS+ CYE GL+IQIEALG++DPRV ETCRYLAEA +QAMQFDEAE+LCKK
Sbjct: 174 TFSMLGQVERSIHCYEEGLKIQIEALGETDPRVGETCRYLAEARVQAMQFDEAESLCKKT 233
Query: 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286
LEIH H ASLEEAADRRLMAL+ EAK DYESALEHLVLASM MIANGQ+NEVAAIDV
Sbjct: 234 LEIHSVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVAAIDV 293
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
SIGNIY+SLCR+DEAIFSYQK LTVFK++RG++H SVAS+F+RLA+LYY+ GKLRES SY
Sbjct: 294 SIGNIYLSLCRYDEAIFSYQKALTVFKSSRGDNHPSVASVFVRLAELYYKTGKLRESGSY 353
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406
CENALR+ AKP P T EEIA G+TEISAIYE++NE EEALKLLQKA+KLLED PG ST
Sbjct: 354 CENALRIYAKPVPGTTAEEIAGGMTEISAIYESINEPEEALKLLQKALKLLEDKPGQQST 413
Query: 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466
IAGIEA+MGVM Y+VGRYGEARSSFESAV KLRASGE KS FFG+VLNQMGLAC+QL++I
Sbjct: 414 IAGIEARMGVMFYLVGRYGEARSSFESAVAKLRASGERKSPFFGVVLNQMGLACVQLFKI 473
Query: 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526
+EA ELFEEARG+LE+ECG CH DT+GVY+NLAATYDA+GRVEDAIEILEY+LK+REE+L
Sbjct: 474 DEAVELFEEARGILEKECGPCHQDTIGVYTNLAATYDAMGRVEDAIEILEYVLKLREEQL 533
Query: 527 GTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGFR 583
GTANPD DDEK+RL+ELLKE G+ARNRK KSL+NL+D N+ R KKE TKR SG GFR
Sbjct: 534 GTANPDFDDEKKRLSELLKEAGKARNRKAKSLQNLIDPNSKRTKKE-TKRWSGLGFR 589
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523649|ref|XP_003530449.1| PREDICTED: nephrocystin-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/525 (75%), Positives = 461/525 (87%), Gaps = 1/525 (0%)
Query: 60 IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQ-ELELVMSL 118
+ ++SLDNPDLGPFLLKLAR+TI+SGD P+KALD+AIRASKSFER + G+ L+L MSL
Sbjct: 53 LSDASLDNPDLGPFLLKLARDTIASGDGPSKALDFAIRASKSFERCAVEGEPSLDLAMSL 112
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
H+LAAIYCSLGRF+EAVPVLER+I+V D+ +G+D ALA FSGYMQLGDT S +G +DRS+
Sbjct: 113 HVLAAIYCSLGRFDEAVPVLERAIQVPDVERGADHALAAFSGYMQLGDTFSMLGQVDRSI 172
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238
CY+ GL+IQI+ALGDSDPRV ETCRYLAEA++QAMQFD+AE+LCKK LEIHR H AS
Sbjct: 173 SCYDQGLQIQIQALGDSDPRVGETCRYLAEANVQAMQFDKAEDLCKKTLEIHRAHSEPAS 232
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298
LEEAADRRLMAL+ EAK DYESALEHLVLASM MIANGQ+NEVA+IDVSIGNIYMSLCRF
Sbjct: 233 LEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRF 292
Query: 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358
DEAIFSYQK LTVFK+ +GE+H SVAS+F+RLADLY+R GKLRESKSYCENALR+ +KP
Sbjct: 293 DEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPV 352
Query: 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418
P T EEIA GLTEISA++E+++E EEALKLL +AMKLLED PG STIAGIEA+MGVM
Sbjct: 353 PGTTAEEIAGGLTEISAVFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMY 412
Query: 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478
Y++GRY ++R+SFESAV KLRASGE KSAFFG+VLNQMGLAC+QL++I+EA ELFEEARG
Sbjct: 413 YMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARG 472
Query: 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538
+LEQECG CH DTLGVYSNLAATYDA+GRV DAIEILEY+LK+REEKLG ANPD +DEK
Sbjct: 473 ILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKR 532
Query: 539 RLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGFR 583
RLAELLKE G+ R+RK KSLENL+D + R KKE KR G GFR
Sbjct: 533 RLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGAKRWPGLGFR 577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513265|ref|XP_003525334.1| PREDICTED: nephrocystin-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/584 (70%), Positives = 474/584 (81%), Gaps = 23/584 (3%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKRFPSPSPSNSRAKRTSEKVTI 60
MP L+SV P RSPSP+ K+ S + + +
Sbjct: 1 MPGLVSVADTPQ-------------------RSPSPVPKKAAS---PSPSGSSKKKAPLL 38
Query: 61 DESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQ-ELELVMSLH 119
++SLDNPDLGPFLLKLAR+TI+SGD P KALD+AIRAS SFER + G+ L+L MSLH
Sbjct: 39 SDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAIRASTSFERCAIQGEPSLDLAMSLH 98
Query: 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVW 179
+LAAIYCSLGRFEEAVPVLER+I V D+ +G D ALA FSGYMQLGDT S +G +DRS+
Sbjct: 99 VLAAIYCSLGRFEEAVPVLERAILVPDVDRGPDHALASFSGYMQLGDTFSMLGQVDRSIS 158
Query: 180 CYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239
CY+ GL+IQI+ALGD+DPRV ETCRYLAEA++QAMQFD+AE LCKK LEIHR H ASL
Sbjct: 159 CYDQGLQIQIQALGDTDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRAHSEPASL 218
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299
EEAADRRLMAL+ EAK DYESALEHLVLASM MIANGQ+NEVA+IDVSIGNIYMSLCRFD
Sbjct: 219 EEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFD 278
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
EAIFSYQK LTVFK+ +GE+H SVAS+F+RLADLY+R GKLRESKSYCENALR+ +KP P
Sbjct: 279 EAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVP 338
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419
T EEIA GLTEISA++E+++E EEALKLL +AMKLLED PG STIAGIEA+MGVM Y
Sbjct: 339 GTTAEEIAGGLTEISAVFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMYY 398
Query: 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479
++GRY ++R+SFESAV KLRASGE KSAFFG+VLNQMGLAC+QL++I+EA ELFEEARG+
Sbjct: 399 MIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGI 458
Query: 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539
LEQECG CH DTLGVYSNLAATYDA+GRV DAIEILEY+LK+REEKLG ANPD +DEK R
Sbjct: 459 LEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRR 518
Query: 540 LAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGFR 583
LAELLKE G+ R+RK KSLENL+D + R KKE KR G GFR
Sbjct: 519 LAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGAKRWPGLGFR 562
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130572|ref|XP_002320874.1| predicted protein [Populus trichocarpa] gi|222861647|gb|EEE99189.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/570 (71%), Positives = 471/570 (82%), Gaps = 6/570 (1%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNG-STNNLRSPSPLRKRFPSPSPSNSRAK---RTSE 56
M L+S KT PN TP ++ P N N +PSPL KR PSPS + + K +T +
Sbjct: 1 MLGLVSAKTTPNATPQHVSFPQNDNCIHKNGYETPSPLLKRTPSPSFAKPKIKPPNKTLQ 60
Query: 57 KVTIDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116
++ ESSLDNPDLGPFLLKLA +T++SGDN NKALDYA RAS SFE+ SG G L+L M
Sbjct: 61 ELRTHESSLDNPDLGPFLLKLAIDTVASGDNQNKALDYAARASISFEKSSGLG--LDLAM 118
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
SL + AAIYCS+GR E+A+PVLERSIE +D GSD A+AKFSG+MQLGDT S +G +DR
Sbjct: 119 SLQVEAAIYCSMGRLEDAIPVLERSIEALDHKNGSDHAVAKFSGFMQLGDTYSMLGRVDR 178
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
S+ YESGL+IQ E LGD DP V ETCRYLAEA++QAMQFDEAE LC++ LEI R H
Sbjct: 179 SISSYESGLKIQTETLGDLDPSVTETCRYLAEAYVQAMQFDEAEKLCQRSLEIQRVHNAP 238
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296
ASLEEA DRRLMAL+YEAK DYESALEHLVLASMVMIA GQENEVAAIDVSIGNIY+SLC
Sbjct: 239 ASLEEAGDRRLMALIYEAKGDYESALEHLVLASMVMIAAGQENEVAAIDVSIGNIYVSLC 298
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
RFDEAIFSYQK LTVFK+ RG+DH ++AS++IRLAD+Y + GKLRESKSYCENALR+ +K
Sbjct: 299 RFDEAIFSYQKALTVFKSIRGDDHCTIASVYIRLADVYCKTGKLRESKSYCENALRILSK 358
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416
P P A EEIA+GLTEISAIY+ALNEHEEALKLL AMKLL+DTPG HS IAGIEA MGV
Sbjct: 359 PVPGIATEEIASGLTEISAIYQALNEHEEALKLLDMAMKLLKDTPGQHSMIAGIEAHMGV 418
Query: 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
M Y VGRYGEARSSF++AV KLRASG+++S FFGIVLNQMGLA QLYRI+EA +LF+EA
Sbjct: 419 MFYKVGRYGEARSSFKNAVAKLRASGKTRSVFFGIVLNQMGLASAQLYRIDEAAQLFQEA 478
Query: 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536
R +LEQECGSCHLDT+GVYSNLAATYDA+GRVEDA ILEYILK+REEKLGTANP++ DE
Sbjct: 479 REILEQECGSCHLDTIGVYSNLAATYDAMGRVEDATVILEYILKLREEKLGTANPEVADE 538
Query: 537 KERLAELLKETGRARNRKGKSLENLLDSNA 566
KERLA LLKE GRAR RKG SL NLLDS++
Sbjct: 539 KERLAMLLKEAGRARIRKGNSLVNLLDSSS 568
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236944|ref|NP_192822.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|3513727|gb|AAC33943.1| contains similarity to TPR domains (Pfam: TPR.hmm: score: 11.15) and kinesin motor domains (Pfam: kinesin2.hmm, score: 17.49, 20.52 and 10.94) [Arabidopsis thaliana] gi|4539358|emb|CAB40052.1| putative protein [Arabidopsis thaliana] gi|7267782|emb|CAB81185.1| putative protein [Arabidopsis thaliana] gi|18176148|gb|AAL59992.1| unknown protein [Arabidopsis thaliana] gi|19699309|gb|AAL91265.1| AT4g10840/F25I24_50 [Arabidopsis thaliana] gi|24030472|gb|AAN41387.1| unknown protein [Arabidopsis thaliana] gi|332657533|gb|AEE82933.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/610 (67%), Positives = 488/610 (80%), Gaps = 32/610 (5%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKRFPS-------PSPSNSRAKR 53
MP L+SVKTP +T PL + +P Q S N R+P K+ PS PSP+ S K+
Sbjct: 4 MPGLVSVKTPSDTPPLRVAVPDTQPLS-NPPRTP---MKKTPSSTPSRSKPSPNRSTGKK 59
Query: 54 TSEKVT--------IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERF 105
S V+ +D+ SLDNPDLGPFLLKLAR+ I+SG+ PNKALDYAIRA+KSFER
Sbjct: 60 DSPTVSSSTAAVIDVDDPSLDNPDLGPFLLKLARDAIASGEGPNKALDYAIRATKSFERC 119
Query: 106 -----------SGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154
S G L+L MSLH+LAAIYCSLGRF+EAVP LER+I+V D +G D +
Sbjct: 120 CAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPDPTRGPDHS 179
Query: 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM 214
LA FSG+MQLGDT S +G +DRS+ CYE GL+IQI+ LGD+DPRV ETCRYLAEA++QAM
Sbjct: 180 LAAFSGHMQLGDTLSMLGQIDRSIACYEEGLKIQIQTLGDTDPRVGETCRYLAEAYVQAM 239
Query: 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274
QF++AE LCKK LEIHR H ASLEEAADRRLMA++ EAK DYE+ALEHLVLASM MIA
Sbjct: 240 QFNKAEELCKKTLEIHRAHSEPASLEEAADRRLMAIICEAKGDYENALEHLVLASMAMIA 299
Query: 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
+GQE+EVA+IDVSIGNIYMSLCRFDEA+FSYQK LTVFKA++GE H +VAS+F+RLA+LY
Sbjct: 300 SGQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELY 359
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
+R GKLRESKSYCENALR+ KP P T EEIA GLTEISAIYE+++E EEALKLLQK+M
Sbjct: 360 HRTGKLRESKSYCENALRIYNKPVPGTTVEEIAGGLTEISAIYESVDEPEEALKLLQKSM 419
Query: 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLN 454
KLLED PG S IAG+EA+MGVM Y VGRY +AR++FESAV KLRA+GE KSAFFG+VLN
Sbjct: 420 KLLEDKPGQQSAIAGLEARMGVMYYTVGRYEDARNAFESAVTKLRAAGE-KSAFFGVVLN 478
Query: 455 QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514
QMGLAC+QL++I+EA ELFEEARG+LEQE G C DTLGVYSNLAATYDA+GR+EDAIEI
Sbjct: 479 QMGLACVQLFKIDEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEI 538
Query: 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574
LE +LK+REEKLGTANPD +DEK+RLAELLKE GR+RN K KSL+NL+D NA KKE +
Sbjct: 539 LEQVLKLREEKLGTANPDFEDEKKRLAELLKEAGRSRNYKAKSLQNLIDPNARPPKKESS 598
Query: 575 -KRRSGFGFR 583
K+ GF+
Sbjct: 599 AKKWPSLGFK 608
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21554384|gb|AAM63491.1| putative kinesin light chain [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/610 (67%), Positives = 488/610 (80%), Gaps = 32/610 (5%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPSPLRKRFPS-------PSPSNSRAKR 53
MP L+SVKTP +T PL + +P Q S N R+P K+ PS PSP+ S K+
Sbjct: 1 MPGLVSVKTPSDTPPLRVAVPDTQPLS-NPPRTP---MKKTPSSTPSRSKPSPNRSTGKK 56
Query: 54 TSEKVT--------IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERF 105
S V+ +D+ SLDNPDLGPFLLKLAR+ I+SG+ PNKALDYAIRA+KSFER
Sbjct: 57 DSPTVSSSTAAVIDVDDPSLDNPDLGPFLLKLARDAIASGEGPNKALDYAIRATKSFERC 116
Query: 106 -----------SGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154
S G L+L MSLH+LAAIYCSLGRF+EAVP LER+I+V D +G D +
Sbjct: 117 CAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPDPTRGPDHS 176
Query: 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM 214
LA FSG+MQLGDT S +G +DRS+ CYE GL+IQI+ LGD+DPRV ETCRYLAEA++QAM
Sbjct: 177 LAAFSGHMQLGDTLSMLGQIDRSIACYEEGLKIQIQTLGDTDPRVGETCRYLAEAYVQAM 236
Query: 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274
QF++AE LCKK LEIHR H ASLEEAADRRLMA++ EAK DYE+ALEHLVLASM MIA
Sbjct: 237 QFNKAEELCKKTLEIHRAHSEPASLEEAADRRLMAIICEAKGDYENALEHLVLASMAMIA 296
Query: 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
+GQE+EVA+IDVSIGNIYMSLCRFDEA+FSYQK LTVFKA++GE H +VAS+F+RLA+LY
Sbjct: 297 SGQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELY 356
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
+R GKLRESKSYCENALR+ KP P T EEIA GLTEISAIYE+++E EEALKLLQK+M
Sbjct: 357 HRTGKLRESKSYCENALRIYNKPVPGTTVEEIAGGLTEISAIYESVDEPEEALKLLQKSM 416
Query: 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLN 454
KLLED PG S IAG+EA+MGVM Y VGRY +AR++FESAV KLRA+GE KSAFFG+VLN
Sbjct: 417 KLLEDKPGQQSAIAGLEARMGVMYYTVGRYEDARNAFESAVTKLRAAGE-KSAFFGVVLN 475
Query: 455 QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514
QMGLAC+QL++I+EA ELFEEARG+LEQE G C DTLGVYSNLAATYDA+GR+EDAIEI
Sbjct: 476 QMGLACVQLFKIDEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEI 535
Query: 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574
LE +LK+REEKLGTANPD +DEK+RLAELLKE GR+RN K KSL+NL+D NA KKE +
Sbjct: 536 LEQVLKLREEKLGTANPDFEDEKKRLAELLKEAGRSRNYKAKSLQNLIDPNARPPKKESS 595
Query: 575 -KRRSGFGFR 583
K+ GF+
Sbjct: 596 AKKWPSLGFK 605
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|365222860|gb|AEW69782.1| Hop-interacting protein THI007 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/605 (68%), Positives = 489/605 (80%), Gaps = 21/605 (3%)
Query: 1 MPSLISVKTPPNTTPLNILIPAIQNGSTNNLRSPS------------------PLRKRFP 42
MP L+SVKTPP T L I + +G + S S + P
Sbjct: 1 MPGLVSVKTPPETPALRISVSDENHGRNASGSSRSEQVNPKTNSPAPRRPPSPSTSRAKP 60
Query: 43 SPSPSNSRAKRTSEKVTIDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSF 102
SP + + K EKV IDESSLDNPDLGPFLLKLAR+TI+SG+ P KALDYA+RA+KSF
Sbjct: 61 SPDRGSGKKKSPPEKVEIDESSLDNPDLGPFLLKLARDTIASGEGPTKALDYALRAAKSF 120
Query: 103 ERFSGSGQ-ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGY 161
ER + G+ L+L MSLH++AAIYCSLGRF+EA+PVLE +I+V ++ +G+D ALA FSGY
Sbjct: 121 ERCAVVGEPSLDLAMSLHVVAAIYCSLGRFDEAIPVLETAIKVPEVSRGADHALAAFSGY 180
Query: 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAEN 221
MQLGDT S +G LDRS+ Y+ GL+ Q+EALGD+DPRVAETCRYLAEAH+QAMQFDEAE+
Sbjct: 181 MQLGDTYSMLGQLDRSIESYKEGLKTQMEALGDTDPRVAETCRYLAEAHVQAMQFDEAES 240
Query: 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281
LCKK LEIHR H ASLEEAADRRLMAL+ EAK DYESALEHLVLA+M MIANGQE EV
Sbjct: 241 LCKKTLEIHRVHSPPASLEEAADRRLMALICEAKCDYESALEHLVLANMAMIANGQETEV 300
Query: 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341
AAIDV IGNIY+SL RFDEA+FSYQK LTVFK+++G++H SVAS+++RLADLYY+ GK+R
Sbjct: 301 AAIDVGIGNIYLSLSRFDEAVFSYQKALTVFKSSKGDNHPSVASVYVRLADLYYKTGKVR 360
Query: 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401
ES+SYCENALR+ AKP P T PE+IA+GL EISAIYE NE EEALKLL KAMKLLED P
Sbjct: 361 ESRSYCENALRIYAKPVPGTTPEDIASGLMEISAIYELFNEPEEALKLLLKAMKLLEDKP 420
Query: 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL 461
G STIAGIEA+MGVM Y+VGRY EAR+SFE+AV+KLRASGE KSAFFG+VLNQMGL+ +
Sbjct: 421 GQQSTIAGIEARMGVMFYMVGRYEEARNSFENAVIKLRASGERKSAFFGVVLNQMGLSSV 480
Query: 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521
QL++I+EA ELFEEAR +LEQECG CH DTLGVYSNLAATYDA+GRV+DAIEILEY+LK+
Sbjct: 481 QLFKIDEAAELFEEAREILEQECGHCHQDTLGVYSNLAATYDAIGRVDDAIEILEYVLKL 540
Query: 522 REEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT--KRRSG 579
REEKLGTANPD +DEK+RLAELLKE GR+RN+ SLENL+D N+ R K+ T K+ S
Sbjct: 541 REEKLGTANPDFNDEKKRLAELLKEAGRSRNKNPNSLENLIDPNSKRTTKKETSSKKWSA 600
Query: 580 FGFRT 584
FGFR+
Sbjct: 601 FGFRS 605
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 584 | ||||||
| TAIR|locus:2123411 | 609 | KLCR1 "kinesin light chain-rel | 0.976 | 0.935 | 0.659 | 2.4e-195 | |
| TAIR|locus:2086834 | 663 | KLCR2 "kinesin light chain-rel | 0.917 | 0.808 | 0.574 | 8.6e-159 | |
| TAIR|locus:2015959 | 650 | KLCR3 "AT1G27500" [Arabidopsis | 0.864 | 0.776 | 0.561 | 9e-148 | |
| TAIR|locus:2042506 | 617 | AT2G31240 "AT2G31240" [Arabido | 0.852 | 0.807 | 0.254 | 1.2e-40 | |
| ASPGD|ASPL0000018313 | 1288 | AN3547 [Emericella nidulans (t | 0.691 | 0.313 | 0.214 | 7.4e-13 | |
| MGI|MGI:1921275 | 1325 | Nphp3 "nephronophthisis 3 (ado | 0.616 | 0.271 | 0.233 | 2.6e-11 | |
| UNIPROTKB|E1BSU8 | 1316 | NPHP3 "Uncharacterized protein | 0.604 | 0.268 | 0.244 | 6.9e-11 | |
| UNIPROTKB|A0JM23 | 1311 | nphp3 "Nephrocystin-3" [Xenopu | 0.625 | 0.278 | 0.232 | 8.8e-11 | |
| RGD|1563856 | 1325 | Nphp3 "nephronophthisis 3 (ado | 0.599 | 0.264 | 0.239 | 8.9e-11 | |
| UNIPROTKB|D4A1W7 | 1325 | Acad11 "Acyl-CoA dehydrogenase | 0.599 | 0.264 | 0.239 | 8.9e-11 |
| TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 388/588 (65%), Positives = 462/588 (78%)
Query: 11 PNTTPLNI--LIPAIQNGSTNNLRS-PSPLRKRFPSPSPSNSRAKRTSEKVTIDESSLDN 67
P+T PL+ P + S+ RS PSP R SP+ S + T+ + +D+ SLDN
Sbjct: 24 PDTQPLSNPPRTPMKKTPSSTPSRSKPSPNRSTGKKDSPTVSSS--TAAVIDVDDPSLDN 81
Query: 68 PDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERF---------SGS--GQELELVM 116
PDLGPFLLKLAR+ I+SG+ PNKALDYAIRA+KSFER GS G L+L M
Sbjct: 82 PDLGPFLLKLARDAIASGEGPNKALDYAIRATKSFERCCAAVAPPIPGGSDGGPVLDLAM 141
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
SLH+LAAIYCSLGRF+EAVP LER+I+V D +G D +LA FSG+MQLGDT S +G +DR
Sbjct: 142 SLHVLAAIYCSLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSGHMQLGDTLSMLGQIDR 201
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
S+ CYE GL+IQI+ LGD+DPRV ETCRYLAEA++QAMQF++AE LCKK LEIHR H
Sbjct: 202 SIACYEEGLKIQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEP 261
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296
ASLEEAADRRLMA++ EAK DYE+ALEHLVLASM MIA+GQE+EVA+IDVSIGNIYMSLC
Sbjct: 262 ASLEEAADRRLMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLC 321
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
RFDEA+FSYQK LTVFKA++GE H +VAS+F+RLA+LY+R GKLRESKSYCENALR+ K
Sbjct: 322 RFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNK 381
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGV 416
P P T EEIA GLTEISAIYE+++E D PG S IAG+EA+MGV
Sbjct: 382 PVPGTTVEEIAGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGV 441
Query: 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
M Y VGRY +AR++FESAV KLRA+GE KSAFFG+VLNQMGLAC+QL++I+EA ELFEEA
Sbjct: 442 MYYTVGRYEDARNAFESAVTKLRAAGE-KSAFFGVVLNQMGLACVQLFKIDEAGELFEEA 500
Query: 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536
RG+LEQE G C DTLGVYSNLAATYDA+GR+EDAIEILE +LK+REEKLGTANPD +DE
Sbjct: 501 RGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDE 560
Query: 537 KERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT-KRRSGFGFR 583
K+RLAELLKE GR+RN K KSL+NL+D NA KKE + K+ GF+
Sbjct: 561 KKRLAELLKEAGRSRNYKAKSLQNLIDPNARPPKKESSAKKWPSLGFK 608
|
|
| TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 315/548 (57%), Positives = 396/548 (72%)
Query: 23 IQNGSTNNLRSPSPLRKRFPSPSPSNSRAKRTSEKVTIDESSLDNPDLGPFLLKLARETI 82
+ NG + SP + P S +SR KV++DE S P+LG LLK ARE +
Sbjct: 112 LSNGK--KVAKTSPNNPKMPG-SRISSRKSPDLGKVSVDEES---PELGVVLLKQARELV 165
Query: 83 SSGDNPNKALDYAIRASKSFERFSGSGQE---LELVMSLHMLAAIYCSLGRFEEAVPVLE 139
SSG+N NKALD A+RA K FE+ G G++ L LVMSLH+LAAIY LGR+ +AVPVLE
Sbjct: 166 SSGENLNKALDLALRAVKVFEK-CGEGEKQLGLNLVMSLHILAAIYAGLGRYNDAVPVLE 224
Query: 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199
RSIE+ I G D ALAKF+G MQLGD MG ++ S+ Y +GLEIQ + LG+SD RV
Sbjct: 225 RSIEIPMIEDGEDHALAKFAGCMQLGDMYGLMGQVENSIMLYTAGLEIQRQVLGESDARV 284
Query: 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA--SLEEAADRRLMALVYEAKAD 257
ETCRYLAEAH+QAMQF+EA LC+ L+IH+E+G +A S+EEAADR+LM L+ +AK D
Sbjct: 285 GETCRYLAEAHVQAMQFEEASRLCQMALDIHKENGAAATASIEEAADRKLMGLICDAKGD 344
Query: 258 YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317
YE ALEH VLASM M + +VAA+D SIG+ YMSL RFDEAIF+YQK L VFK +G
Sbjct: 345 YEVALEHYVLASMAMSSQNHREDVAAVDCSIGDAYMSLARFDEAIFAYQKALAVFKQGKG 404
Query: 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377
E H SVA +++RLADLY +IGK R+SKSYCENAL++ KP P T EE+A G EISAIY
Sbjct: 405 ETHSSVALVYVRLADLYNKIGKTRDSKSYCENALKIYLKPTPGTPMEEVATGFIEISAIY 464
Query: 378 EALNEHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437
+++NE + PG +TIAGIEAQMGV+ Y++G Y E+ F+SA+ K
Sbjct: 465 QSMNELDQALKLLRRALKIYANAPGQQNTIAGIEAQMGVVTYMMGNYSESYDIFKSAISK 524
Query: 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497
R SGE K+A FGI LNQMGLAC+Q Y INEA +LFEEA+ +LE+ECG H DTL VYSN
Sbjct: 525 FRNSGEKKTALFGIALNQMGLACVQRYAINEAADLFEEAKTILEKECGPYHPDTLAVYSN 584
Query: 498 LAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKS 557
LA TYDA+GR++DAIEILEY++ REEKLGTANP+++DEK+RLA LLKE GR R+++ ++
Sbjct: 585 LAGTYDAMGRLDDAIEILEYVVGTREEKLGTANPEVEDEKQRLAALLKEAGRGRSKRNRA 644
Query: 558 LENLLDSN 565
L LLD+N
Sbjct: 645 LLTLLDNN 652
|
|
| TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
Identities = 284/506 (56%), Positives = 374/506 (73%)
Query: 61 DESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQE-LELVMSLH 119
+E S +N +L FLL AR +SSGD+ +KAL+ RA+K FE + +G+ LE +M LH
Sbjct: 137 EEPSSENVELARFLLNQARNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLH 196
Query: 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVW 179
+ AA++C L + EA+PVL+RS+E+ + +G + ALAKF+G MQLGDT + +G L+ S+
Sbjct: 197 VTAAVHCKLKEYNEAIPVLQRSVEIPVVEEGEEHALAKFAGLMQLGDTYAMVGQLESSIS 256
Query: 180 CYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239
CY GL IQ + LG++DPRV ETCRYLAEA +QA++FDEA+ +C+ L IHRE G S+
Sbjct: 257 CYTEGLNIQKKVLGENDPRVGETCRYLAEALVQALRFDEAQQVCETALSIHRESGLPGSI 316
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299
EAADRRLM L+ E K D+E+ALEHLVLASM M ANGQE+EVA +D SIG+ Y+SL RFD
Sbjct: 317 AEAADRRLMGLICETKGDHENALEHLVLASMAMAANGQESEVAFVDTSIGDSYLSLSRFD 376
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
EAI +YQK LT K +GE+H +V S++IRLADLY R GK+RE+KSYCENALR+
Sbjct: 377 EAICAYQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNL 436
Query: 360 ATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLY 419
+PEEIA+GLT+IS I E++NE D+PG IAGIEAQMGV+ Y
Sbjct: 437 EISPEEIASGLTDISVICESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQMGVLYY 496
Query: 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479
++G+Y E+ ++F+SA+ KLRA+G+ +S FFGI LNQMGLAC+QL I EA ELFEEA+ +
Sbjct: 497 MMGKYMESYNTFKSAISKLRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELFEEAKCI 556
Query: 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539
LEQECG H +TLG+YSNLA YDA+GR++DAI++L +++ VREEKLGTANP +DEK R
Sbjct: 557 LEQECGPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVTEDEKRR 616
Query: 540 LAELLKETGRARNRKGKSLENLLDSN 565
LA+LLKE G RK KSL+ L+DS+
Sbjct: 617 LAQLLKEAGNVTGRKAKSLKTLIDSD 642
|
|
| TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 131/514 (25%), Positives = 236/514 (45%)
Query: 51 AKRTSEKVTID---ESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG 107
A T E V + E S + +LG LKL G++P K L YA +A KSF+ G
Sbjct: 95 ANTTDEMVRLFKEMELSFEGNELGLSALKLGLHLDREGEDPEKVLSYADKALKSFDG-DG 153
Query: 108 SGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV-VDIGKGSDRALAKF-----SGY 161
+ L + M+ ++ + L RF +++ L R+ + V + D + +
Sbjct: 154 NKPNLLVAMASQLMGSANYGLKRFSDSLGYLNRANRILVKLEADGDCVVEDVRPVLHAVQ 213
Query: 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAEN 221
++L + ++MG + ++ + LEI+ + + R LA+A++ + F+EA
Sbjct: 214 LELANVKNAMGRREEAIENLKKSLEIKEMTFDEDSKEMGVANRSLADAYVAVLNFNEALP 273
Query: 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281
K LEIH++ + S E A DRRL+ ++Y ++ ALE L+ V+ G + E+
Sbjct: 274 YALKALEIHKKELGNNSAEVAQDRRLLGVIYSGLEQHDKALEQNRLSQRVLKNWGMKLEL 333
Query: 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341
++ N+ ++L +++EAI + +V + T + + A +FI ++ K
Sbjct: 334 IRAEIDAANMKVALGKYEEAIDILK---SVVQQTDKDSEMR-AMVFISMSKALVNQQKFA 389
Query: 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTP 401
ESK E A + K A P E+A +E++ YE++NE P
Sbjct: 390 ESKRCLEFACEILEKKETAL-PVEVAEAYSEVAMQYESMNEFETAISLLQKTLGILEKLP 448
Query: 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL 461
+ + A++G +L GR +A ESA +L+ S +K G V N +G A L
Sbjct: 449 QEQHSEGSVSARIGWLLLFSGRVSQAVPYLESAAERLKESFGAKHFGVGYVYNNLGAAYL 508
Query: 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521
+L R A ++F A+ +++ G H+D++ NL+ Y +G A+E + ++
Sbjct: 509 ELGRPQSAAQMFAVAKDIMDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINA 568
Query: 522 REEKLGTANPDIDDEKERLAEL-LKETGRARNRK 554
+ +A ++ + K L +L LK G K
Sbjct: 569 WDNHGDSAKDEMKEAKRLLEDLRLKARGGVSTNK 602
|
|
| ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 90/419 (21%), Positives = 173/419 (41%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
+++ L +Y G+ +EA + +R++ + G D + LG+ S G L
Sbjct: 839 TVNNLGILYSDQGKLKEAEEMYQRALAGYEKALGPDHTSTLVT-VNNLGNLYSDQGKLKE 897
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILE-IHREHG- 234
+ Y+ L+ +ALG +T L + + EAE + ++ L + G
Sbjct: 898 AEKMYQQALKGYEKALGPDHTSTLDTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGP 957
Query: 235 -HSASLEEAADRRLMALVYEAKADYESALE--HLVLASMVMIANGQENEVAAIDVS-IGN 290
H+++L+ + + ++Y+ + + A E LA A G ++ + V+ +G+
Sbjct: 958 DHTSTLDTVNN---LGILYKNQGKLKEAEEMYQRALAGKEK-ALGPDHTSTLMTVNNLGS 1013
Query: 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350
+Y + EA YQ+ L ++ G DH S L +LY GKL+E++ + A
Sbjct: 1014 LYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQA 1073
Query: 351 LRVCAKP-APA-TAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGYHSTIA 408
L K P T+ N L + + L E P + ST+
Sbjct: 1074 LAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQALAGYEKAVG-PDHTSTLD 1132
Query: 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468
+ +G++ G+ EA ++ A+ + + +N +G ++ E
Sbjct: 1133 TVN-NLGILYSDQGKLKEAEKMYQQALAGYEKALSPDHTSTLMTVNNLGSLYKNQGKLKE 1191
Query: 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527
A E++++A E+ G H TL +NL Y G++++A E+ + L + LG
Sbjct: 1192 AEEMYQQALAGKEKALGPDHTSTLMTVNNLGILYSDQGKLKEAEEMFQRALAGYGKALG 1250
|
|
| MGI|MGI:1921275 Nphp3 "nephronophthisis 3 (adolescent)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 91/390 (23%), Positives = 166/390 (42%)
Query: 141 SIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200
S++ + +G + L Y LG +GLL ++V + LEI+ AL PRVA
Sbjct: 921 SLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVA 980
Query: 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL--VYEAKADY 258
++ LA ++Q +F +AE L K+ LEI E+ + A AA R L AL +Y + Y
Sbjct: 981 QSLHQLAGVYVQWKKFGDAEQLYKQALEIS-ENAYGADHPHAA-RELEALATLYHKQNKY 1038
Query: 259 ESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRG 317
E A EH S+++ + G++Y +L R ++ L + + T G
Sbjct: 1039 EQA-EHFRKKSVIIRQQATRRK--------GSLYGFALLR--------RRALQLEELTLG 1081
Query: 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE--EIANGLTEISA 375
+D A L LY+ L ++ + + +L + + P+ + N L +
Sbjct: 1082 KDKPENARTLNELGVLYFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCN 1141
Query: 376 IYEALNEHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ E P H ++A + ++ G+ +A +E AV
Sbjct: 1142 EKKQY-EKAEELYERALDIRRRALAPD-HPSLAYTVKHLAILYKKTGKVDKAVPLYELAV 1199
Query: 436 -VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494
++ ++ G + ++N + + Q+ + +EA L+E A + E G H
Sbjct: 1200 EIRQKSFGPKHPSVATALVN-LAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGET 1258
Query: 495 YSNLAA-TYDALGRVEDAIEILEYILKVRE 523
NLA +Y+ G E A E+ + ++++E
Sbjct: 1259 LKNLAVLSYEE-GNFEKAAELYKRAMEIKE 1287
|
|
| UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 93/381 (24%), Positives = 161/381 (42%)
Query: 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
+G + + Y LG +GLL ++V + LEI+ AL PRVA++ LA
Sbjct: 920 EGEESMICLADLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPRVAQSLHQLAG 979
Query: 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL--MALVYEAKADYESALEHLV 266
++Q +F AE L K+ LEI E+ + A A R L +A++Y+ + YE A E L
Sbjct: 980 VYVQWKKFGNAEQLYKQALEIS-ENAYGAEHPRVA-RELDALAMLYQKQNKYEQA-EQLR 1036
Query: 267 LASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326
S + + G SLC F A+ Q+ L + + T G+D A
Sbjct: 1037 KKSFKIRQKAARRK--------G----SLCGF--ALLR-QRALQLEELTLGKDTPDNART 1081
Query: 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE--EIANGLTEISAIYEALNEHX 384
L LYY L ++ + + +L + + P+ + N L + + ++
Sbjct: 1082 LNELGVLYYLQNNLETAELFLKRSLEMRERVLGPNHPDCAQSLNNLAALYNEKKHYDKAE 1141
Query: 385 XXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGE 443
P H ++A + V+ +G+ +A +E AV ++ ++ G
Sbjct: 1142 ELYEKALDIRRRAL-APD-HPSLAYTVKHLAVLYKKMGKLDKAVPLYELAVEIRQKSFGP 1199
Query: 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA-TY 502
+ ++N L C Q+ + EA L+E A + E G H NLA +Y
Sbjct: 1200 KHPSVATALVNLAVLYC-QMKKQTEALPLYERALKIYEDSFGHMHPRVGETLKNLAVLSY 1258
Query: 503 DALGRVEDAIEILEYILKVRE 523
+ G E A E+ + ++++E
Sbjct: 1259 EG-GDFEKAAELYKRAMEIKE 1278
|
|
| UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 92/395 (23%), Positives = 167/395 (42%)
Query: 133 EAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192
+A+ ERS E G+ +LA Y LG +GLL ++V + LEI+ AL
Sbjct: 908 DALKQYERSCE----GEEKMTSLADL--YETLGRFLKDLGLLSQAVTPLQRSLEIRETAL 961
Query: 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVY 252
P VA++ LA ++Q+ +F AE L K+ LEI S + A + +A++Y
Sbjct: 962 DPDHPSVAQSLHQLAGVYVQSKKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLY 1021
Query: 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTV 311
+ + +E A E L S+ + + G++Y +L R ++ L +
Sbjct: 1022 QKQNKFEQA-EQLRKKSLKIRQKSARRK--------GSMYGFALLR--------RRALQL 1064
Query: 312 FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE--EIANG 369
+ T G+D A L LYY L ++++ + +L + + A P+ + N
Sbjct: 1065 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHPDCAQSINN 1124
Query: 370 LTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429
L + + ++ +P H ++A + V+ G+ +A
Sbjct: 1125 LAALYNEKKQYDKAEELYERALDIRRRAL-SPD-HPSLAYTVKHLAVLYKRKGKLDKAVP 1182
Query: 430 SFESAV-VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488
+E AV ++ ++ G + ++N L C Q+ + EA+ L+E A + E G H
Sbjct: 1183 LYELAVEIRQKSFGPKHPSVATALVNLAVLYC-QMKKQAEASPLYERAMKIYEDSLGRMH 1241
Query: 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523
NLA G E A E+ + ++++E
Sbjct: 1242 PRVGETLKNLAVLRYEEGDFEKAAELYKRAMEIKE 1276
|
|
| RGD|1563856 Nphp3 "nephronophthisis 3 (adolescent)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 92/384 (23%), Positives = 161/384 (41%)
Query: 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
+G + L Y LG +GLL ++V + LEI+ AL PRVA++ LA
Sbjct: 929 EGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAG 988
Query: 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL--VYEAKADYESALEHLV 266
++Q +F +AE L K+ LEI E+ + A AA R L AL +Y + YE A E
Sbjct: 989 VYVQWKKFSDAEQLYKQALEIS-ENAYGADHPHAA-RELEALATLYHKQNKYEQA-ERFR 1045
Query: 267 LASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325
S+++ + G++Y +L R ++ L + + T G+D A
Sbjct: 1046 KKSVIIRQQATRRK--------GSLYGFALLR--------RRALQLEELTLGKDKPENAR 1089
Query: 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE--EIANGLTEISAIYE--ALN 381
L LYY L ++ + + +L + + P+ + N L + + A
Sbjct: 1090 TLNELGVLYYLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNERKQYARA 1149
Query: 382 EHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRA 440
E D P T+ + ++ GR +A +E AV ++ ++
Sbjct: 1150 EELYERALDIRRRALAPDHPSLAYTVK----HLAILYKKTGRVDKAVPLYELAVEIRQKS 1205
Query: 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500
G + ++N + + Q+ + +EA L+E A + E G H NLA
Sbjct: 1206 FGPKHPSVATALVN-LAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAV 1264
Query: 501 -TYDALGRVEDAIEILEYILKVRE 523
+Y+ G E A E+ + ++++E
Sbjct: 1265 LSYEE-GNFEKAAELYKRAMEIKE 1287
|
|
| UNIPROTKB|D4A1W7 Acad11 "Acyl-CoA dehydrogenase family member 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 92/384 (23%), Positives = 161/384 (41%)
Query: 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
+G + L Y LG +GLL ++V + LEI+ AL PRVA++ LA
Sbjct: 929 EGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAG 988
Query: 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL--VYEAKADYESALEHLV 266
++Q +F +AE L K+ LEI E+ + A AA R L AL +Y + YE A E
Sbjct: 989 VYVQWKKFSDAEQLYKQALEIS-ENAYGADHPHAA-RELEALATLYHKQNKYEQA-ERFR 1045
Query: 267 LASMVMIANGQENEVAAIDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325
S+++ + G++Y +L R ++ L + + T G+D A
Sbjct: 1046 KKSVIIRQQATRRK--------GSLYGFALLR--------RRALQLEELTLGKDKPENAR 1089
Query: 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE--EIANGLTEISAIYE--ALN 381
L LYY L ++ + + +L + + P+ + N L + + A
Sbjct: 1090 TLNELGVLYYLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNERKQYARA 1149
Query: 382 EHXXXXXXXXXXXXXXXDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRA 440
E D P T+ + ++ GR +A +E AV ++ ++
Sbjct: 1150 EELYERALDIRRRALAPDHPSLAYTVK----HLAILYKKTGRVDKAVPLYELAVEIRQKS 1205
Query: 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500
G + ++N + + Q+ + +EA L+E A + E G H NLA
Sbjct: 1206 FGPKHPSVATALVN-LAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAV 1264
Query: 501 -TYDALGRVEDAIEILEYILKVRE 523
+Y+ G E A E+ + ++++E
Sbjct: 1265 LSYEE-GNFEKAAELYKRAMEIKE 1287
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 584 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 5e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
+GN+Y L +DEA+ Y+K L + A + LA YY++GK E+
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDY 57
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
E AL + + A + Y L ++EEAL+ +KA++L +
Sbjct: 58 EKALELD---------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379
H +A+ LA + R+G E+ E AL + A+ PE A L ++ +Y A
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPE-TARALNNLARLYLA 58
Query: 380 LNEHEEALKLLQKAMKLLED 399
L +++EAL+ L+KA+ L E
Sbjct: 59 LGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-08
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA 511
LN + L +L +EA EL E+A + E G H +T +NLA Y ALG ++A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 512 IEILEYILKVREE 524
+E LE L +RE
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-08
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339
++AA ++ + L +DEA+ +K L + + GEDH A LA LY +G
Sbjct: 3 DLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGD 61
Query: 340 LRESKSYCENALRVC 354
E+ Y E AL +
Sbjct: 62 YDEALEYLEKALALR 76
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422
++A L ++ + L +++EAL+LL+KA++L + H A + + +G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 423 RYGEARSSFESAV 435
Y EA E A+
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ LG+ +G D ++ YE LE+ DP A+ LA A+ + +++EA
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEAL 54
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268
+K LE+ ++ + + L Y YE ALE A
Sbjct: 55 EDYEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (116), Expect = 2e-06
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 19/271 (7%)
Query: 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188
EA+ +LE + ++++ AL ++L GLL ++
Sbjct: 17 KLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLE 76
Query: 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248
E LAEA + EA ++ LE+ + + A+ L
Sbjct: 77 EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLA 136
Query: 249 ALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKG 308
DYE ALE A + + + NE+A +++G + +L R++EA+ +K
Sbjct: 137 LGALYELGDYEEALELYEKA---LELDPELNELAEALLALGALLEALGRYEEALELLEKA 193
Query: 309 LTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368
L + A + L LY ++GK E+ Y E AL + + A
Sbjct: 194 LKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD---------PDNAE 237
Query: 369 GLTEISAIYEALNEHEEALKLLQKAMKLLED 399
L ++ + L +EEAL+ L+KA++L D
Sbjct: 238 ALYNLALLLLELGRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK 255
P +A LA + +DEA L +K LE+ RE G E A +A +Y A
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGE-DHPETARALNNLARLYLAL 59
Query: 256 ADYESALEHL 265
DY+ ALE+L
Sbjct: 60 GDYDEALEYL 69
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
L +G D ++ E LE+ LG+ P A LA ++ +DEA
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLALGDYDEAL 66
Query: 221 NLCKKILEIHRE 232
+K L +
Sbjct: 67 EYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385
+ L +LYY++G E+ Y E AL + A A ++A Y L ++EE
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA---------YYNLAAAYYKLGKYEE 52
Query: 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
AL+ +KA++L D + + ++ G+Y EA ++E A+
Sbjct: 53 ALEDYEKALELDPDNAKAYYNLGLAYYKL-------GKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 5e-05
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532
T +NLA A GR E+A E+LE L +R LG +PD
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (104), Expect = 7e-05
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEH 264
+ A+ + L + + + + A + L+ EA YE ALE
Sbjct: 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117
Query: 265 LVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324
L A +A + ++A +++G L ++EA+ Y+K L + +A
Sbjct: 118 LEKA----LALDPDPDLAEALLALG-ALYELGDYEEALELYEKALE-----LDPELNELA 167
Query: 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
+ L L +G+ E+ E AL++ P++ A L + +Y L ++E
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYE 219
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
EAL+ +KA++L D A + ++L +GRY EA + E A
Sbjct: 220 EALEYYEKALELDPD-------NAEALYNLALLLLELGRYEEALEALEKA 262
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRS 177
L L +Y LG ++EA+ E+++E+ D A A Y L +G + +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADA----YYNLAAAYYKLGKYEEA 53
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232
+ YE LE+ DP A+ L A+ + +++EA +K LE+
Sbjct: 54 LEDYEKALEL--------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 83/437 (18%), Positives = 148/437 (33%), Gaps = 81/437 (18%)
Query: 89 NKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148
DYA A K + G V L +LA Y G+F++ + L
Sbjct: 67 LALGDYA-AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELP------GKT 117
Query: 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
D A+ G +G L+ + YE L I DPR LA+
Sbjct: 118 LLDDEGAAELLAL--RGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQ 167
Query: 209 AHIQAMQFDEAENLCKKILEI----HREHGHSASLEEAADRRLMALVYEAKADYESALEH 264
+ +FDEA L ++L L + +AL A Y A+
Sbjct: 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL-----AAYRKAIAL 222
Query: 265 LVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324
V++A + I + F+EA +K + +
Sbjct: 223 RPNNIAVLLA-------------LATILIEAGEFEEA----EKHADALLK-KAPNSPLAH 264
Query: 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
+++ A + ++ +++ ++AL+ +APE + L A L E
Sbjct: 265 --YLK-ALVDFQKKNYEDARETLQDALK--------SAPEYL-PALLLAGASEYQLGNLE 312
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444
+A + L + +K ++ +A I+ ++G R EA ++ A+
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLG-------RVDEAIATLSPAL----GLDPD 361
Query: 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504
A + +G A L L +A E +A L+ E + + L + +
Sbjct: 362 DPAALSL----LGEAYLALGDFEKAAEYLAKA-TELDPENAA-------ARTQLGISKLS 409
Query: 505 LGRVEDAIEILEYILKV 521
G +AI LE ++
Sbjct: 410 QGDPSEAIADLETAAQL 426
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472
+G + Y +G Y EA +E A+ + A +L + EA E
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKAL--------ELDPDNADAYYNLAAAYYKLGKYEEALED 56
Query: 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
+E+A LE + + Y NL Y LG+ E+A+E E L++
Sbjct: 57 YEKA---LELDPDNAK-----AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463
H +A + ++L +G Y EA E A+ R GE LN + L L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGE-DHPETARALNNLARLYLAL 59
Query: 464 YRINEATELFEEA 476
+EA E E+A
Sbjct: 60 GDYDEALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (95), Expect = 8e-04
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 39/289 (13%)
Query: 262 LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL 321
L LA ++ E A+ + + L EA+ ++ L +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEAL------ELLPNS 56
Query: 322 SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALN 381
+A + + LA ++G+L E+ E AL + P +A L + + EAL
Sbjct: 57 DLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALG 109
Query: 382 EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441
++EEAL+LL+KA+ L D + +A LY +G Y EA +E A+
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALG------ALYELGDYEEALELYEKALELDPE- 162
Query: 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501
LN++ A L L + EA +EEA +LE+ D NL
Sbjct: 163 -----------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211
Query: 502 YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550
Y LG+ E+A+E E L+ +PD + LA LL E GR
Sbjct: 212 YLKLGKYEEALEYYEKALE--------LDPDNAEALYNLALLLLELGRY 252
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144
+ ++AL+ +A + E +L+ LA +Y +LG ++EA+ LE+++ +
Sbjct: 20 DYDEALELLEKALELARELGED--HPETARALNNLARLYLALGDYDEALEYLEKALAL 75
|
Length = 78 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 584 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.92 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.92 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.88 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.86 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.8 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.8 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.74 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.66 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.37 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 99.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.17 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 99.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 99.14 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 99.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 99.06 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.05 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 98.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.95 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.9 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.89 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.88 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.87 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.84 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.77 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.77 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 98.74 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.73 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 98.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 98.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.6 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.59 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.58 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.54 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.5 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.44 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.44 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.36 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 98.35 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.28 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 98.2 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 98.17 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.95 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.91 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.88 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.83 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.83 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.82 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.81 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.8 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.75 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.7 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.7 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.66 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.66 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.65 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.62 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.62 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.61 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.6 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.58 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.57 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.51 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.47 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.43 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.43 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.34 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.24 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.23 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.18 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.9 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.87 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 96.86 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.85 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.79 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 96.72 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.69 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.66 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.61 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.51 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.3 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.24 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 96.22 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.1 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 96.05 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 96.01 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.97 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 95.91 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.82 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 95.76 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.65 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 95.64 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.64 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 95.61 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.6 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 95.57 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 95.57 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 95.5 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.42 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.37 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 95.33 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 95.32 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.15 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.15 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 94.91 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.9 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 94.75 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 94.74 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.65 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.62 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 94.49 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 94.42 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.36 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 94.3 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.27 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.25 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.09 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.07 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 93.9 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.79 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.78 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 93.77 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.63 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 93.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.33 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.86 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.84 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 92.76 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 92.42 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.33 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.19 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 92.04 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 91.99 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.89 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.86 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 90.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.79 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 90.69 | |
| KOG2908 | 380 | consensus 26S proteasome regulatory complex, subun | 90.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.46 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.37 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.33 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.22 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 90.12 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 89.95 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 89.81 | |
| PF05053 | 618 | Menin: Menin; InterPro: IPR007747 MEN1, the gene r | 89.79 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.65 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 89.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.34 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.04 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 88.28 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 88.22 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 88.12 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 87.81 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 87.7 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 87.7 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 87.11 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 87.1 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 87.05 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 87.03 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 86.88 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 86.36 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 85.85 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 85.83 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 85.74 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 85.53 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 85.25 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 84.87 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 84.72 | |
| KOG2908 | 380 | consensus 26S proteasome regulatory complex, subun | 84.54 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 84.34 | |
| cd02678 | 75 | MIT_VPS4 MIT: domain contained within Microtubule | 84.23 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.99 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.92 | |
| smart00745 | 77 | MIT Microtubule Interacting and Trafficking molecu | 82.99 | |
| PF12854 | 34 | PPR_1: PPR repeat | 82.67 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 82.48 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.15 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 81.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 81.44 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 81.25 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 81.2 | |
| cd02684 | 75 | MIT_2 MIT: domain contained within Microtubule Int | 81.08 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 80.79 | |
| cd02656 | 75 | MIT MIT: domain contained within Microtubule Inter | 80.5 | |
| PF10858 | 220 | DUF2659: Protein of unknown function (DUF2659); In | 80.36 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=338.37 Aligned_cols=399 Identities=20% Similarity=0.240 Sum_probs=330.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
...|.-++++..+|.++..+|+ ++.|+.+|+.++++ .|..+++|.++|.++...|+.+.|..+|..++++
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel---------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIEL---------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhc---------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 3566777888888888888888 88888888888875 5667888888888888888888888888888887
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
.+... .+...+|..+...|+..+|...|.++++. .|..+.+|.+||.++..+|+...|+..|+
T Consensus 180 nP~l~---------ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 180 NPDLY---------CARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred Ccchh---------hhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 53211 34667888888888888888888888887 77888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHH
Q 007930 225 KILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFS 304 (584)
Q Consensus 225 ~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 304 (584)
+++++.|...+ +|.++|.+|...+.+++|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..
T Consensus 243 eAvkldP~f~d--------AYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 243 EAVKLDPNFLD--------AYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred HhhcCCCcchH--------HHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHH
Confidence 88887765553 4888888888888888888888888764 777888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 305 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
|++++++ .|....++++||..+...|+..+|..+|.+++.+.. ..+.++++||.+|..+|.++
T Consensus 309 Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p---------~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 309 YKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP---------NHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---------ccHHHHHHHHHHHHHhccch
Confidence 8888887 788888888888888888888888888888888863 34678888888888888888
Q ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC
Q 007930 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY 464 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (584)
+|..+|.++++..+.. +....+||.+|.++|++++|+.+|++++.+ .|..+.++.++|..|..+|
T Consensus 372 ~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhh
Confidence 8888888888887766 667778888888888888888888888885 5667888888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+.+.|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|++++.+ .|+.++++.+++.++
T Consensus 437 ~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhhhHHHHHH
Confidence 888888888888888 8888888888888888888888888888888888 788888888888887
Q ss_pred HHhchHHH
Q 007930 545 KETGRARN 552 (584)
Q Consensus 545 ~~~g~~~~ 552 (584)
.-.-+|.+
T Consensus 501 q~vcdw~D 508 (966)
T KOG4626|consen 501 QIVCDWTD 508 (966)
T ss_pred HHHhcccc
Confidence 77666555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=338.04 Aligned_cols=417 Identities=20% Similarity=0.256 Sum_probs=376.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH-------------------------HhhcCCCchhHHHHHHHHHHHHHHhc
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSF-------------------------ERFSGSGQELELVMSLHMLAAIYCSL 128 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (584)
.+.+|...++.|+ |.+|.+++...-..- .........+..+++|.++|.++...
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 6778888888888 888888775432210 00000223567889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
|++++|+.+|+.++++.++ . +.+|.++|.++...|+.+.|...|..++++ +|...-+...+|.
T Consensus 130 g~~~~al~~y~~aiel~p~-----f----ida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-----F----IDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGN 192 (966)
T ss_pred chHHHHHHHHHHHHhcCch-----h----hHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhH
Confidence 9999999999999988532 2 256999999999999999999999999999 8999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
++...|+..+|..+|.++++..+.. +.+|.++|.++..+|+...|+.+|++|+.+ +|....+|.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNL 258 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFLDAYINL 258 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcchHHHhhH
Confidence 9999999999999999999976633 456999999999999999999999999885 89999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
|.+|...+.+++|+..|.+++.+ .|..+.++.++|.+|..+|..+-|+..|++++++. |....
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---------P~F~~ 321 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---------PNFPD 321 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---------CCchH
Confidence 99999999999999999999998 79999999999999999999999999999999985 44678
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+++++|..+...|+..+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.++++. .+.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~ 386 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE 386 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence 99999999999999999999999999998877 778899999999999999999999999996 556
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
.+.+..+||.+|.++|++++|+.+|++++.+ .|..++++.++|.+|..+|+...|+.+|.+|+.+
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------- 451 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------- 451 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-------
Confidence 7889999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+|..++++.+||.+|...|+..+|+ ..++.++...|+.++.
T Consensus 452 -nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 452 -NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPDFPDA 492 (966)
T ss_pred -CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCCCchh
Confidence 9999999999999999999999999 8888999888876554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=252.35 Aligned_cols=419 Identities=37% Similarity=0.463 Sum_probs=348.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
.+.....++..++.....+.++.+.+....+++...++.. .......+......+...+.+++|....++......
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~----~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSV----AQLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 4555666777777777777767888888888777666543 111112344556666667777777776665432210
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
...++......-+.+..+......+.+..+..+..+|....+...++..|..+|+|++|+..++.+
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111333333333333666666777777777788889999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
+++..+..+. +++.+......+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9986554432 244455555679999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
+|+.+.+...|+++|..+.++.+||.+|...|++++|..++++++++.++. .+..++.+...+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999999999999999999999999999999984 5888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 387 LKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
..++++++++..+.++.. ..++.++.++|.+|..+|++++|.++|++++.+.++.++.........++++|..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 999999999999887754 4899999999999999999999999999999999999887778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+.+|...|.++..+. +..|+++|+....+.+|+.+|..+|++++|+++.++++...+..+|..+|.....-..++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999988888777666665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=275.94 Aligned_cols=419 Identities=18% Similarity=0.148 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
+..+..+|..++..|+ |++|+..|++++.+. |+ ...+.++|.+|..+|++++|+..+++++++.
T Consensus 127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~---------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----- 190 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK---------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----- 190 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence 4557889999999999 999999999999752 22 3468899999999999999999999999874
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
++.. .++..+|.+|..+|++++|+..|..+...- ........... ...+. ..+...+...++..
T Consensus 191 p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~~--~~~l~-----~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 191 PDYS----KALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQAV--ERLLK-----KFAESKAKEILETK 254 (615)
T ss_pred CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHHH--HHHHH-----HHHHHHHHHHHhcC
Confidence 2232 458899999999999999999887665441 11111111000 00000 01111111111111
Q ss_pred HHhCC-------------------------CCCHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 231 REHGH-------------------------SASLEEAADRRLMALVY---EAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 231 ~~~~~-------------------------~~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
+.... .........+..++..+ ...+++++|+..|++++... ...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~a 331 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKEA 331 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhhH
Confidence 00000 00001112233344332 23478999999999887632 2356778
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
.++..+|.++..+|++++|+..+++++++ .|....++..+|.++...|++++|+..++++++...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------- 396 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS------- 396 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------
Confidence 88999999999999999999999999998 688889999999999999999999999999998742
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++..
T Consensus 397 --~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 462 (615)
T TIGR00990 397 --EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN----- 462 (615)
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 235789999999999999999999999999987655 567789999999999999999999999985
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....++..+|.++...|++++|+..|++++.+..... +........+...+.++...|++++|+.++++++.+
T Consensus 463 ---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l- 537 (615)
T TIGR00990 463 ---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKALII- 537 (615)
T ss_pred ---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Confidence 334567899999999999999999999999999832110 001111122222333445579999999999999998
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+...++..+|.++..+|++++|+ ..++.+++..+
T Consensus 538 -------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~ 573 (615)
T TIGR00990 538 -------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELAR 573 (615)
T ss_pred -------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhc
Confidence 7888889999999999999999999 88888876655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=289.47 Aligned_cols=410 Identities=18% Similarity=0.181 Sum_probs=285.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
.|.....+..+|..+...|+ +++|+..|+++++. .|....++..+|.++...|++++|+..|++++...
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSI---------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 34445556666666666666 66666666666653 22234455566666666666666666666666543
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.+. .++..++.++...|++++|+..+++++.. +|.....+..++.++...|++++|+..++++
T Consensus 530 ----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 530 ----PKNL----RAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred ----cCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 23556666666666666666666666655 4444556666666677777777777776666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
++..+.. ...+..+|.++...|++++|+..|++++.. .+....++..+|.++...|++++|+..++
T Consensus 594 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 594 ADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433221 234667777777777777777777766553 33444566677777777777777777777
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
++++. .|....++..++.++...|++++|+..++...... +.....+..+|.++...|++++|
T Consensus 660 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 660 RALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHHHHHHHCCCHHHH
Confidence 77665 45556667777777777777777777776665543 12245667788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
+..|++++...+.. ..+..++.++...|++++|+..+++++.. .+....++..+|.++...|++
T Consensus 723 ~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 723 IQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCH
Confidence 88888888764432 34557788888888888888888888774 233457788888889889999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|+.+|+++++. .|....++..++.++...|+ .+|+.++++++.+ .|+....+..+|.++..
T Consensus 787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHH
Confidence 9999999998887 67777888888888888888 7788888888887 56677778888999999
Q ss_pred hchHHHHHHHHHHHHHhhhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.|++++|. ..++.+++.+|..
T Consensus 850 ~g~~~~A~-~~~~~a~~~~~~~ 870 (899)
T TIGR02917 850 KGEADRAL-PLLRKAVNIAPEA 870 (899)
T ss_pred cCCHHHHH-HHHHHHHhhCCCC
Confidence 99999998 7888888777653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=288.63 Aligned_cols=405 Identities=21% Similarity=0.261 Sum_probs=353.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..++..+...|+ +++|+..+++++.. .|....++..++.++...|++++|+.++++++...
T Consensus 494 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 494 IEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTI---------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred hCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 467778889999999999999 99999999999975 33456778899999999999999999999998764
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
+... ..+..++.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..|++
T Consensus 564 -----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 564 -----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred -----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 34778999999999999999999999876 566678899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
+++..+... ..+..+|.++...|++++|+..+++++.. .+....++..++.++...|++++|+..+
T Consensus 627 ~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 627 LLALQPDSA--------LALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHhCCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998754332 45889999999999999999999998763 5566778899999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 306 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
+...+. .+.....+..+|.++...|++++|+..|++++..... . ..+..++.++...|++++
T Consensus 693 ~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~----~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 693 KSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S----QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c----hHHHHHHHHHHHCCCHHH
Confidence 988765 5667778889999999999999999999999987532 1 467789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
|...+++++...+.. ..++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|+
T Consensus 755 A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 755 AVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc
Confidence 999999998875543 567889999999999999999999999985 23456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.+|+.++++++.. .|+....+..+|.++...|++++|..+|+++++. .|....++..++.++.
T Consensus 820 -~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 820 -PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALL 882 (899)
T ss_pred -HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHH
Confidence 8899999999998 6677788899999999999999999999999998 7888899999999999
Q ss_pred HhchHHHHHHHHHHHHH
Q 007930 546 ETGRARNRKGKSLENLL 562 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~ 562 (584)
..|++++|. ..++.++
T Consensus 883 ~~g~~~~A~-~~~~~~~ 898 (899)
T TIGR02917 883 ATGRKAEAR-KELDKLL 898 (899)
T ss_pred HcCCHHHHH-HHHHHHh
Confidence 999999999 7777665
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=275.44 Aligned_cols=413 Identities=14% Similarity=0.048 Sum_probs=316.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh-----------c--cC
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI-----------G--KG 150 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~--~~ 150 (584)
.|+ +++|+..++++++. +|....++..+|.++...|++++|+..+++++..... . ..
T Consensus 160 ~g~-~~~A~~~L~~ll~~---------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 160 PAQ-RPEAINQLQRLNAD---------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP 229 (1157)
T ss_pred Ccc-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC
Confidence 466 77888888877765 3445667889999999999999999999987542100 0 00
Q ss_pred ----------------Cchh-hh-HHH--------------HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 151 ----------------SDRA-LA-KFS--------------GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 151 ----------------~~~~-~~-~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
+... .. ... ....+|.++...|++++|+..|++++.. +|.
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~ 301 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPK 301 (1157)
T ss_pred CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence 0000 00 000 0124488899999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL------EEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
...++..+|.++...|++++|+.+|+++++..+........ ........+|.++...|++++|+..|++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88999999999999999999999999999887654321110 01123345688899999999999999999885
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH---------------------------
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS--------------------------- 325 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------- 325 (584)
.|....++..+|.++...|++++|+.+|++++++. |....
T Consensus 381 -----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--------p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 381 -----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--------PGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 55666788999999999999999999999999762 22222
Q ss_pred ---------------HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 007930 326 ---------------IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL 390 (584)
Q Consensus 326 ---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 390 (584)
.+..+|.++...|++++|+..|++++++... ...++..+|.++...|++++|+..+
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---------SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2334566777889999999999999988532 3567889999999999999999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------
Q 007930 391 QKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV----------------------------------- 435 (584)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----------------------------------- 435 (584)
+++++..+.. ...++.++..+...+++++|+..++++.
T Consensus 519 ~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 519 RRLAQQKPND-------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9998765543 2344455555566666666665554321
Q ss_pred --HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 436 --VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 436 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
.+++. .+.....+..+|.++...|++++|+..|+++++. .|+...++..++.+|...|++++|+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 11111 1223456788999999999999999999999998 88888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.++++++. .|+...++..+|.++...|++++|. ..++.++...+
T Consensus 659 ~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhCc
Confidence 99988876 7788888999999999999999999 78888886543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=278.04 Aligned_cols=420 Identities=14% Similarity=0.131 Sum_probs=307.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+|..+...|+ +++|+..|+++++. +|....++..+|.++...|++++|+.+|+++++..+.........
T Consensus 274 ~~G~~~~~~g~-~~~A~~~l~~aL~~---------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 274 AQGLAAVDSGQ-GGKAIPELQQAVRA---------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 44788889999 99999999999986 344577889999999999999999999999998764322111000
Q ss_pred -----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 156 -----AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 156 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
..+.....+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|++.|++++++.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 01123456688999999999999999999998 67778899999999999999999999999999886
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 231 REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG---QENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 231 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
+... .++..++.++. .+++++|+.++++......... ........+..+|.++...|++++|+..|++
T Consensus 416 p~~~--------~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 416 PGNT--------NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred CCCH--------HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5432 33566677664 3567777776654322110000 0011123456677777778888888888888
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHH
Q 007930 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387 (584)
Q Consensus 308 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 387 (584)
+++. .|....++..+|.+|...|++++|+..+++++..... ....+..++..+...+++++|+
T Consensus 487 Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~---------~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 487 RLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN---------DPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHhCCCHHHHH
Confidence 7776 5666777777888888888888888888777765321 1233344444444455555554
Q ss_pred HHHHHHH-------------------------------------HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 388 KLLQKAM-------------------------------------KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 388 ~~~~~a~-------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
..++++. ...... +.....+..+|.++...|++++|+..
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~----p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ----PPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC----CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 4443311 111111 11134567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
|++++.. .|....++..++.++...|++++|++.++++++. .|+...++..+|.++...|++++
T Consensus 626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence 9999985 3445689999999999999999999999998876 77777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 511 A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
|..+|++++...... +.....+..+..+|.++...|++++|. ..++.++
T Consensus 690 A~~~~~~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al 738 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAM 738 (1157)
T ss_pred HHHHHHHHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 999999998862110 001124566778899999999999999 6666665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=246.06 Aligned_cols=449 Identities=19% Similarity=0.178 Sum_probs=349.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
-..++..+.++..++..++..|+ |+.+..++..++.. ....+..++.++.+|.+|..+|+|++|..+|.+++.
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~------t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKN------TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 34567777888999999999999 99999999999876 234566788899999999999999999999999987
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC----CHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM----QFDEA 219 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A 219 (584)
..+.. .. -.++.+|..|...|+++.|+.+|++++.. .|+..+++..||.+|...+ ..+.|
T Consensus 336 ~~~d~----~~----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 336 ADNDN----FV----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred cCCCC----cc----ccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 75221 12 23788999999999999999999999988 6888889999999998876 56777
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
..+..++++..+.. ..+|..++.++....-+.. +.+|..|+.++...+.. --..+++++|..++..|++.
T Consensus 400 ~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChH
Confidence 77777777765433 3568899988876655555 99999999888877665 56778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCc--ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDH--LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
+|..+|.+|+..+......+. .......+++|.++...++++.|.+.|...+... |....++..+|...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---------p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---------PGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---------chhHHHHHHhhHHH
Confidence 999999999998654332222 2345578999999999999999999999998874 56788888888777
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcc-----------------------------cHHHHHHHHHHHHHHh-----cc
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHS-----------------------------TIAGIEAQMGVMLYVV-----GR 423 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~~~-----g~ 423 (584)
...++..+|...+..++......+..+. .-+.++..||.++... .+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 7888888888888888776544322110 1123445677766543 22
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
.+++...+.+|++++.+.-. .+|....+-+.+|.++...|++.+|...|.++.+- ..+...+|.++|.||.
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--------~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--------TSDFEDVWLNLAHCYV 691 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--------HhhCCceeeeHHHHHH
Confidence 23444444444444433222 34556788999999999999999999999999887 3345578999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 504 ALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 504 ~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.+|+|..|++.|+.++..+. ..+...++..||+++.+.|++.+|+ ..+..++...|..+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccch
Confidence 99999999999999998742 2345688999999999999999999 777777766665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-30 Score=236.18 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=267.8
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
....|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++++|+..|++++.+.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34577888888889999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+... |.+++.++.++.+||.+|...|++++|..++++|+++.....+ .+..+...+.+++.++..++++++|..++++
T Consensus 272 e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 272 EEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9864 8899999999999999999999999999999999999998766 4667788899999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
++++.....+..++..+..+.++|.+|..+|++++|.++|++|+.+.++..+..++.....+.++|..|.+++++.+|..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 99999977777777889999999999999999999999999999999999998888989999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.|.++..+. +.+|+++|+....+.+|+.+|..+|++++|. +..+.++
T Consensus 431 l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVL 477 (508)
T ss_pred HHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHH
Confidence 999999999 9999999999999999999999999999999 7777776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-29 Score=250.36 Aligned_cols=385 Identities=15% Similarity=0.115 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
...+..+|.++...|+ +++|+..+++++++ +|+...++..+|.+|..+|++++|+..|..+.....
T Consensus 160 ~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l---------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~---- 225 (615)
T TIGR00990 160 PVYYSNRAACHNALGD-WEKVVEDTTAALEL---------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDG---- 225 (615)
T ss_pred hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 4578999999999999 99999999999986 455788999999999999999999999977654421
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------HHH-----------hCCCChHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ--------------IEA-----------LGDSDPRVAETCRY 205 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~~~-----------~~~~~~~~~~~~~~ 205 (584)
....... ..+. ..+. ..+......++... ... ....++.....+..
T Consensus 226 ~~~~~~~-~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 226 FRNEQSA-QAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred CccHHHH-HHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 1111000 0000 0000 00111111111000 000 00002222333444
Q ss_pred HHHHH---HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 206 LAEAH---IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 206 la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
++..+ ...+++++|+..|+++++... ..+..+.++..+|.++..+|++++|+..+++++.+ .|...
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~ 365 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVT 365 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcH
Confidence 44433 234789999999999987641 23455677999999999999999999999999874 67778
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+.+|++++.+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P------- 430 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP------- 430 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-------
Confidence 89999999999999999999999999987 677889999999999999999999999999998853
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.....+..+|.++..+|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++.+.....
T Consensus 431 --~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 431 --DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred --cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 335678899999999999999999999999876655 56788999999999999999999999998743321
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.. .......+...+.++...|++++|+.++++++.+ +|+...++..+|.++...|++++|+.+|++++++.
T Consensus 502 ~~-~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 502 PM-YMNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cc-cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 11 1111122222333444479999999999999998 77777899999999999999999999999999984
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=226.81 Aligned_cols=428 Identities=16% Similarity=0.169 Sum_probs=350.4
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007930 62 ESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERS 141 (584)
Q Consensus 62 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 141 (584)
-+...+|+.+..++..|...+..|+ |..|+.+|+.++.+.+... +.....+|.|+.++|+.+.|+..|+++
T Consensus 155 ~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 155 FVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHHHHHH
Confidence 3455789999999999999999999 9999999999998755432 223336789999999999999999999
Q ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHH
Q 007930 142 IEVVDIGKGSDRALAKFSGYMQLGDTCSSMG---LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDE 218 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 218 (584)
+++.+. .+.++..||.+-.... .+..+...+.++... ++..+.++..|+..++..|+|..
T Consensus 226 lqLdp~---------~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 226 LQLDPT---------CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred HhcChh---------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcccHHH
Confidence 998631 2244666666655444 455666666666665 56778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 298 (584)
+..+...++.... .....+..++.+|..|..+|+|++|..+|.+++.. ++......++.+|.+|...|++
T Consensus 289 v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhHHHHHhchH
Confidence 9999999887652 34566788999999999999999999999998764 2333466788999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG----KLRESKSYCENALRVCAKPAPATAPEEIANGLTEIS 374 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 374 (584)
+.|..+|++++.. .|....++..+|.+|...+ ..+.|..++.++++.. +....+|..++
T Consensus 359 e~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---------~~d~~a~l~la 421 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---------PVDSEAWLELA 421 (1018)
T ss_pred HHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---------cccHHHHHHHH
Confidence 9999999999988 7888999999999998876 5677888888877764 34578999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-CC-CchHHHH
Q 007930 375 AIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE-SK-SAFFGIV 452 (584)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~-~~~~~~~ 452 (584)
.++....- ..++.+|..|+.+........ -..+++++|..++..|++.+|...|.+|+..+....+ +. .......
T Consensus 422 ql~e~~d~-~~sL~~~~~A~d~L~~~~~~i--p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 422 QLLEQTDP-WASLDAYGNALDILESKGKQI--PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHhcCh-HHHHHHHHHHHHHHHHcCCCC--CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 98876544 455999999998888774443 3678899999999999999999999999998553311 11 1223456
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
.+++|.++...++++.|.+.|...+.. +|....++..+|......++..+|..+++.++.+ +..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--------d~~ 562 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--------DSS 562 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--------ccC
Confidence 899999999999999999999999998 9999999999998888899999999999999998 677
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
++.++..+|.++.....+..|. +-++.++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~-k~f~~i~ 591 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAK-KKFETIL 591 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccc-cHHHHHH
Confidence 7888999999999999999998 5444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=237.58 Aligned_cols=333 Identities=14% Similarity=0.083 Sum_probs=185.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAA 243 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 243 (584)
.+..+...|++++|...++..+.. .|....++..+|.+....|++++|+..+++++...|... .
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--------~ 111 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP--------E 111 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh--------H
Confidence 344455556666666666666555 455555666666666666666666666666665554333 2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
++..+|.++...|++++|+..+++++.+ .|....++..++.++...|++++|+..+++++.. .|..
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~ 177 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------VPPR 177 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CCCC
Confidence 3555666666666666666666665543 3444555556666666666666666666655444 2333
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
...+..++ .+...|++++|+..+++++..... . .......++.++...|++++|+..+++++...+..
T Consensus 178 ~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-----~---~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--- 245 (656)
T PRK15174 178 GDMIATCL-SFLNKSRLPEDHDLARALLPFFAL-----E---RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--- 245 (656)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-----c---chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 33333332 245556666666666655443210 0 01122344555556666666666666665543322
Q ss_pred cccHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGE----ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..++..+|.++...|++++ |+..|++++.+ .|....++..+|.++...|++++|+.++++++.+
T Consensus 246 ----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 246 ----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred ----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445556666666666654 55566665553 2233455666666666666666666666666665
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
+|+...++..+|.++...|++++|+..|++++.. +|+.......+|.++...|++++|. ..++
T Consensus 314 --------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~~l~ 376 (656)
T PRK15174 314 --------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-SVFE 376 (656)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 5555556666666666666666666666666654 4555444555566666666666666 5555
Q ss_pred HHHhhhhh
Q 007930 560 NLLDSNAY 567 (584)
Q Consensus 560 ~~~~~~~~ 567 (584)
.++...|+
T Consensus 377 ~al~~~P~ 384 (656)
T PRK15174 377 HYIQARAS 384 (656)
T ss_pred HHHHhChh
Confidence 55555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=236.97 Aligned_cols=362 Identities=13% Similarity=0.050 Sum_probs=287.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
+...+..+...|++++|+..++..+... +.++ .++..+|.+....|++++|+..+++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~----~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGR----DLLRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCch----hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 3356677888999999999999998775 4444 34788889999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....++..+|.++...|++++|+..+++++++.|... .++..++.++...|++++|+..+.+.+..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~------ 173 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQE------ 173 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence 8888999999999999999999999999998865433 35888999999999999999999866543
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++...
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--- 242 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--- 242 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 223333444443 4788999999999999887651 12223344566888999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEE----ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+....++..+|.++...|++++ |+..|++++.+.++. ..++..+|.++...|++++|+..+++
T Consensus 243 ------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 243 ------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred ------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2236788889999999999986 899999999887654 67788999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
++.. .|....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 9985 3445678888999999999999999999999987 77776677778999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
.|+++++...... .+...++...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999999843322 122334555566666666555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-27 Score=238.18 Aligned_cols=440 Identities=11% Similarity=0.001 Sum_probs=329.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+.....+....|+ +++|+..+.++... .+..+.++..+|.++...|++++|+..|+++++..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~---------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVH---------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555556666777888999 99999998888763 23346678899999999999999999999999875
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
+..+ .++..++.++...|++++|+..++++++. .|.... +..+|.++...|++++|+..+++
T Consensus 80 -----P~~~----~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 80 -----PQND----DYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred -----CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333 23678999999999999999999999998 677777 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-----HcCCh--
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM-----SLCRF-- 298 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~-- 298 (584)
+++..|... .++..++.++...+..++|+..++++... ... ...........+..+.. ..+++
T Consensus 142 al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~~-p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 142 ALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANLT-PAE-KRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCCC-HHH-HHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 999877543 34677899999999999999988765420 000 00000111122222222 22334
Q ss_pred -hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 299 -DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 299 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
++|+..++.+++...... ...+....+.......+...|++++|+..|+++++... ..|..+. ..+|.+|
T Consensus 212 ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~------~~P~~a~--~~la~~y 282 (765)
T PRK10049 212 ADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ------IIPPWAQ--RWVASAY 282 (765)
T ss_pred HHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CCCHHHH--HHHHHHH
Confidence 677888887776533211 11223333434322344677999999999999876621 1123233 3368899
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-------CCCCCchHH
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS-------GESKSAFFG 450 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~ 450 (584)
...|++++|+.+|++++...+.. ..........++.++...|++++|+..++++....... .........
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 99999999999999987643221 11112344567778899999999999999988752210 000011234
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.++..++.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+ +
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~ 423 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------E 423 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------C
Confidence 57788999999999999999999999998 7888899999999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
|+....+..+|.++..+|++++|. ..++.++...|+.....
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999 99999999988887765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=202.26 Aligned_cols=391 Identities=17% Similarity=0.137 Sum_probs=299.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+..+-..|+-++..|+|++|+++|.+|+++++ +.|. .|.+++-||...|++++-++...+++++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~epi----FYsNraAcY~~lgd~~~Vied~TkALEl------ 178 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DEPI----FYSNRAACYESLGDWEKVIEDCTKALEL------ 178 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CCch----hhhhHHHHHHHHhhHHHHHHHHHHHhhc------
Confidence 355566889999999999999999999999973 3332 3889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHH------------------HHHHHH---------HHhCCCCCH--HHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCK------------------KILEIH---------REHGHSASL--EEAAD 244 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~~---------~~~~~~~~~--~~a~~ 244 (584)
+|....+++..+..+-..|++++|+.-.. +.|+.. ..+..+.-+ .....
T Consensus 179 --~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 179 --NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred --CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 89999999999999999999998865432 222110 000111000 00001
Q ss_pred HHH--------------------H--HHHHHHhc---cHHHHHHHHHHHHHHHHHcCC-------cchHHHHHHHHHHHH
Q 007930 245 RRL--------------------M--ALVYEAKA---DYESALEHLVLASMVMIANGQ-------ENEVAAIDVSIGNIY 292 (584)
Q Consensus 245 ~~~--------------------l--~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~la~~~ 292 (584)
++. + +.-+...+ .|..|...+.+.......... ....+.++...|..+
T Consensus 257 yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 257 YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 110 1 11111112 455666655554433322111 123477888899999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
+..|++..|...++.++.+ ++.....|..+|.+|....+.++-...|.++.++..+ ...+|+.
T Consensus 337 fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---------n~dvYyH 399 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---------NPDVYYH 399 (606)
T ss_pred hhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---------CCchhHh
Confidence 9999999999999999998 6666777999999999999999999999999998643 3578999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
.|.+++-.+++++|+.-|++++.+.++. +..+..++.+.++++++++++..|+.+... .|..+.+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Ev 464 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEV 464 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchH
Confidence 9999999999999999999999998877 677889999999999999999999999985 4556789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA-TYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|. ++.-.+++..|+.++++|+++ +|
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dp 534 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DP 534 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cc
Confidence 9999999999999999999999999983221110 00 1122222222 222358999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
....++..||.+..++|+.++|+ ..++.....
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAi-elFEksa~l 566 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAI-ELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHH
Confidence 99999999999999999999999 777766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-25 Score=225.12 Aligned_cols=443 Identities=12% Similarity=-0.003 Sum_probs=316.4
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007930 62 ESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERS 141 (584)
Q Consensus 62 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 141 (584)
.....+|+...+++.++.++...|+ +++|+.+++++++. +|.....+..++.+ +++++|+..|++.
T Consensus 69 ~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~l---------dP~n~~~~~~La~i----~~~~kA~~~ye~l 134 (987)
T PRK09782 69 YIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKR---------HPGDARLERSLAAI----PVEVKSVTTVEEL 134 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---------CcccHHHHHHHHHh----ccChhHHHHHHHH
Confidence 3345677778888999999999999 89999999999985 33344444445544 8888888888888
Q ss_pred HHHHHhccCCchhhhH-------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--
Q 007930 142 IEVVDIGKGSDRALAK-------------------------------FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ-- 188 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 188 (584)
+...+........... ....+.++.+|..+|++++|+..+.+.++..
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 7765432211100000 0123445888999999999999988876541
Q ss_pred ------------HHH---------hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-----------
Q 007930 189 ------------IEA---------LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS----------- 236 (584)
Q Consensus 189 ------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------- 236 (584)
... ..+.-.....++..++..+...|+.++|...+++.-...+..+..
T Consensus 215 ~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred CHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 000 000001123344566777788888888887777653322211100
Q ss_pred -C---------------------------------------------------------------------------CHH
Q 007930 237 -A---------------------------------------------------------------------------SLE 240 (584)
Q Consensus 237 -~---------------------------------------------------------------------------~~~ 240 (584)
. .+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------HH-------HHc----------------------------
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASM----------VM-------IAN---------------------------- 275 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------~~-------~~~---------------------------- 275 (584)
....+..++......|++++|...++++.. +. ...
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 112233344455566778888777765543 11 000
Q ss_pred --------------CCcch--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc
Q 007930 276 --------------GQENE--VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339 (584)
Q Consensus 276 --------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 339 (584)
+..|. ...++.++|.++.. +++.+|+..+.+++.. .|.. .....+|.++...|+
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------~Pd~-~~~L~lA~al~~~Gr 524 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------QPDA-WQHRAVAYQAYQVED 524 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------CCch-HHHHHHHHHHHHCCC
Confidence 01122 55677888888887 7888899988888876 3443 246667777789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
+++|+..+++++.... . ...+..+|.++...|++++|+.+++++++..+.. ...+..++....
T Consensus 525 ~eeAi~~~rka~~~~p------~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------~~l~~~La~~l~ 587 (987)
T PRK09782 525 YATALAAWQKISLHDM------S----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------NALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHhccCC------C----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHH
Confidence 9999999998754421 1 1346788999999999999999999998764332 334445566666
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|++++|+..|++++++ .|. ...+.++|.++...|++++|+..|++++.+ +|+...++.++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG 650 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALG 650 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 779999999999999985 333 678999999999999999999999999999 899999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++...|++++|+..|++++++ +|+...++.++|.++..+|++++|. ..++.++...|+....
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCchh
Confidence 9999999999999999999998 8999999999999999999999999 8999999888876544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-26 Score=198.62 Aligned_cols=397 Identities=15% Similarity=0.128 Sum_probs=306.1
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+..+-..|..++..|+ |++||.+|.+|+.+.+ +....|.+++-||...|++++.++...+++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p---------~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-- 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCP---------DEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-- 180 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCC---------CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--
Confidence 446678889999999999 9999999999999732 2355778999999999999999999999998852
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHH------------------HHHHH-----HHHHhCC-CChHH-----
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYE------------------SGLEI-----QIEALGD-SDPRV----- 199 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~~~----- 199 (584)
+.. .++++.+..+..+|++.+|+.-.. +.|.. ..+.++. ..|..
T Consensus 181 ---~Y~----KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 181 ---DYV----KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred ---HHH----HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 222 568999999999999999875432 22211 1112221 11111
Q ss_pred HHHHHH--------------------H--HHHHHHhC---CHHHHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHH
Q 007930 200 AETCRY--------------------L--AEAHIQAM---QFDEAENLCKKILEIHREHGHS-----ASLEEAADRRLMA 249 (584)
Q Consensus 200 ~~~~~~--------------------l--a~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~l~ 249 (584)
...++. + +.-....+ .|.+|...+.+........... .....+.++...|
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 111111 1 11111222 4666666666655444333221 1234577888899
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
..++-.|++..|.+.|+.++.+ ++.....|..+|.+|....+.++....|.++.++ +|..+.+|+.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 9999999999999999999875 5555556899999999999999999999999998 7999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
.|.+++-++++++|+.-|++++.+. |..+..+..++.+.++++++++++..|+.+...+|.. ..
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~---------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLD---------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence 9999999999999999999999986 4567899999999999999999999999999998887 56
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
++...|.++..++++++|++.|..++++-.......- .+..+.+.|.+.. -.+++..|+.++.+|+++ +
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence 7888999999999999999999999997443211100 1122222332222 348999999999999999 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 998899999999999999999999999999998544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-25 Score=223.16 Aligned_cols=404 Identities=10% Similarity=-0.022 Sum_probs=305.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|..+..+..+|..+...|+ +++|+..++++++. .|....++..++.++...|++++|+..++++++..
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~---------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSL---------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 467778889999999999999 99999999999986 33345667799999999999999999999999874
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
++.+ . +..+|.++...|++++|+..++++++. .|....++..++.++...+..++|+..+++
T Consensus 114 -----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 114 -----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred -----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 2222 3 667899999999999999999999999 788888888999999999999999999987
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHH-----HHhccH---HHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcC
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVY-----EAKADY---ESALEHLVLASMVMIANGQ-ENEVAAIDVSIGNIYMSLC 296 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~g~~---~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g 296 (584)
+.. .|.... .........+..+. ...+++ ++|++.++..+.......+ .+....+.......+...|
T Consensus 176 ~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 176 ANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 664 222100 00000111122222 223345 7788888877655433222 2233344443233446779
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
++++|+..|+++++.. +..|..+. ..+|.+|...|++++|+.+|++++..... ...........++.+
T Consensus 252 ~~~eA~~~~~~ll~~~-----~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~-----~~~~~~~~~~~L~~a 319 (765)
T PRK10049 252 RYKDVISEYQRLKAEG-----QIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET-----IADLSDEELADLFYS 319 (765)
T ss_pred hHHHHHHHHHHhhccC-----CCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC-----CCCCChHHHHHHHHH
Confidence 9999999999987651 11244433 33689999999999999999998864311 101113456677778
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCC-------CC-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTP-------GY-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~-------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+...|++++|+.+++++....+... .. ......++..++.++...|++++|+..+++++.. .|.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~ 391 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APG 391 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 8999999999999999887754311 01 1123456678999999999999999999999885 344
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..+|.++...|++++|+..+++++.+ .|+....+..+|.++...|++++|...++++++.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~------- 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR------- 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 4689999999999999999999999999999 8998899999999999999999999999999997
Q ss_pred CChhHHHHH
Q 007930 529 ANPDIDDEK 537 (584)
Q Consensus 529 ~~p~~~~~~ 537 (584)
.|+++.+.
T Consensus 457 -~Pd~~~~~ 464 (765)
T PRK10049 457 -EPQDPGVQ 464 (765)
T ss_pred -CCCCHHHH
Confidence 67776443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=189.32 Aligned_cols=331 Identities=16% Similarity=0.152 Sum_probs=281.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.-|.-+++.|++...+.+|+.|++.- .++....-.+|..+|.+|+.+++|++|+++...-+.+.+.+ .+....
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGE 94 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGE 94 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcc
Confidence 45788899999999999999999874 44444444679999999999999999999998888876655 223345
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc--------------------HH
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD--------------------YE 259 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~--------------------~~ 259 (584)
+.+..+||..+...|.|++|+.++.+-+.+.++.+ +....+.+++++|.+|...|+ ++
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 67788999999999999999999999999999988 567788899999999998764 56
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc
Q 007930 260 SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339 (584)
Q Consensus 260 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 339 (584)
.|.++|..-+++....++......++-++|..|+.+|+|+.|+...+.-+.+.++.+ +....-.++.++|.++...|+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcc
Confidence 778888888888888888888899999999999999999999999999999988876 345667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
++.|+++|+..+.+..+. + +....+...+.||..|....++++|+.|+.+-+.+..+. ++......+++.+|..+.
T Consensus 251 fe~A~ehYK~tl~LAiel--g-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIEL--G-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFN 326 (639)
T ss_pred cHhHHHHHHHHHHHHHHh--c-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence 999999999999988774 2 345567888999999999999999999999999998887 666777888899999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
..|..++|+.+.+..+++..++++.... ..+..++...-...|..+
T Consensus 327 alg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCCc
Confidence 9999999999999999999888766533 234556666666666544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=190.36 Aligned_cols=410 Identities=16% Similarity=0.127 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
..+++.++..|-...- +.+|+..|+-.++ ...-|+....-.++|.+|++..+|.+|+++|+.++...+...
T Consensus 201 fsvl~nlaqqy~~ndm-~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin- 271 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDM-TAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN- 271 (840)
T ss_pred HHHHHHHHHHhhhhHH-HHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-
Confidence 3457777777766555 7777777766554 223344445556899999999999999999999998875432
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
....+.++.++|..+.+.|+|++|+..|+.+++. .|... +-++|..|++..|+-++..+.|++.+.+-
T Consensus 272 ---k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 272 ---KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred ---hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 2344567999999999999999999999999988 56554 44567788888899888888888887642
Q ss_pred HHhCCC------CCHH--------------------------------------------------------------HH
Q 007930 231 REHGHS------ASLE--------------------------------------------------------------EA 242 (584)
Q Consensus 231 ~~~~~~------~~~~--------------------------------------------------------------~a 242 (584)
....+. +.+. ..
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 211100 0000 00
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-----------------HHHHHc--------------CCcchHHHHHHHHHHH
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLAS-----------------MVMIAN--------------GQENEVAAIDVSIGNI 291 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~-----------------~~~~~~--------------~~~~~~~~~~~~la~~ 291 (584)
..-.+.+..+.+.|+++.|++.+.-.- ..+... ..+...+.++.+.|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 111223445667788888877664210 000000 0011122333444555
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 007930 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371 (584)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 371 (584)
.+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+++|-+.-.+... .+.++.
T Consensus 500 ~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~ 562 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLV 562 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHH
Confidence 55566666666666666653 4555666677777777777777777777666666533 356666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
.++.+|..+.+..+|++++.++..+.+.. ..++..+|.+|-+.|+-.+|..++-..... .|....
T Consensus 563 qianiye~led~aqaie~~~q~~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyry--------fp~nie 627 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRY--------FPCNIE 627 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccc--------cCcchH
Confidence 67777777777777777776666655544 345566677777777777776666555542 333456
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+...||..|....-+++|+.+|+++.-+ .|........++.|+.+.|+|++|...|+..-.. .|
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fp 691 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FP 691 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------Cc
Confidence 6667777777777778888888887776 6777777777888888888888888888777665 67
Q ss_pred hHHHHHHHHHHHHHHhch
Q 007930 532 DIDDEKERLAELLKETGR 549 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~ 549 (584)
++.+++.-|.++.-.+|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 777887777777777764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-22 Score=198.06 Aligned_cols=442 Identities=13% Similarity=-0.004 Sum_probs=328.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
.....|..+...+..+...++.|+ +..|++.++++++. +|....+...+..++...|+.++|+.++++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~---------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKA---------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhh---------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 445566677789999999999999 99999999999986 22322122267778888899999999999998
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
. +..... ..+..+|.++...|++++|++.|+++++. +|....++..++..+...++.++|+..
T Consensus 96 ~-------p~n~~~--~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 96 S-------SMNISS--RGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred c-------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 1 111111 23556688999999999999999999998 677788888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHH
Q 007930 223 CKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAI 302 (584)
Q Consensus 223 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 302 (584)
++++....+... .+..++.++...++..+|++.+++++.. .|....++..+..++...|-...|.
T Consensus 159 l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 159 ATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999988765422 1344455555577777799999987764 3444444444444444444333333
Q ss_pred H-----------------------------------------HHHHHHHHHHHhhc---C---CcccHHHHHHHHHHHHH
Q 007930 303 F-----------------------------------------SYQKGLTVFKATRG---E---DHLSVASIFIRLADLYY 335 (584)
Q Consensus 303 ~-----------------------------------------~~~~al~~~~~~~~---~---~~~~~~~~~~~la~~~~ 335 (584)
+ ..++++........ . .++....+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 2 23333333333221 1 12233445555566677
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
..|++.+++..|+....... ..|. .+...+|..|...+++++|+.+|++++.-.+..... +........|-
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~------~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~-~~~~~~~~~L~ 374 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGY------KMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN-SDDLLDADDLY 374 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCC------CCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC-CcchHHHHHHH
Confidence 88899999998887654421 2232 366778999999999999999999987654322111 11122234678
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHH----c---CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRA----S---GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..|...+++++|..++++..+...- . ....++........++.++...|++.+|++.+++.+.. .
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------a 446 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------A 446 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 8899999999999999998873220 0 12244567788889999999999999999999999988 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
|....++..+|.++...|++.+|...++.+..+ +|+...+...++.++..+|++.+|. .....++...|+.
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe~ 517 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPED 517 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCCc
Confidence 888899999999999999999999999988887 8999999999999999999999999 8888888888887
Q ss_pred hHHH
Q 007930 569 VKKE 572 (584)
Q Consensus 569 ~~~~ 572 (584)
....
T Consensus 518 ~~~~ 521 (822)
T PRK14574 518 IPSQ 521 (822)
T ss_pred hhHH
Confidence 6654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=189.69 Aligned_cols=388 Identities=14% Similarity=0.127 Sum_probs=291.7
Q ss_pred CCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 68 PDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
|.....-..+|..+++..+ |.+|+.+|+-|++...++. .......+.++|..+.+.|+|++|+..|+..++..+.
T Consensus 234 ~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 234 PNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred CCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 3444445677888988888 9999999999999877654 3346788899999999999999999999999876522
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh------CCCChHH----------------------
Q 007930 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL------GDSDPRV---------------------- 199 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~---------------------- 199 (584)
+.+-+++..|++..|+-++..+.|++.+.+--..- ..++|..
T Consensus 309 ----------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~ 378 (840)
T KOG2003|consen 309 ----------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKAD 378 (840)
T ss_pred ----------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhh
Confidence 13366788889999999998888888765411000 0001100
Q ss_pred ----------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC-----
Q 007930 200 ----------------------------------------AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG----- 234 (584)
Q Consensus 200 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 234 (584)
.+.-.+.+..+.+.|+++.|++.++-.-+...+..
T Consensus 379 aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~ 458 (840)
T KOG2003|consen 379 AEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAAN 458 (840)
T ss_pred HHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhh
Confidence 01112224457788999988887653322111100
Q ss_pred ----------CC--------------CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 235 ----------HS--------------ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 235 ----------~~--------------~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
+. .....+.++.+.|.+-+..|++++|.+.|.+++. ++.....+++++|.
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfnigl 532 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGL 532 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcc
Confidence 00 0001123344455566668999999999998876 57788899999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGL 370 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 370 (584)
.+..+|+.++|+++|-+...+ -...+.++..++.+|..+.+..+|++++-++..+... ...++
T Consensus 533 t~e~~~~ldeald~f~klh~i--------l~nn~evl~qianiye~led~aqaie~~~q~~slip~---------dp~il 595 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI--------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN---------DPAIL 595 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC---------CHHHH
Confidence 999999999999999998777 3567889999999999999999999999999887533 35788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..||.+|-..|+-.+|..++-.....++.. ..+...+|..|....-+++|+.+|+++--+ .|...
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~ 660 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQS 660 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHH
Confidence 899999999999999999988877776655 456678999999999999999999998764 34455
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.....++.|+.+.|+|++|.+.|+..... .|...+++..|.++.-.+|-. +|.++-.+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 66777899999999999999999998877 788888888888888777753 34444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=186.31 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=279.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.-|.-+++.|++...+.+|+.+++.... +-.....+|..||.+|+..++|++|+++...-+.+.+..+ +....+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEA 95 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEA 95 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccc
Confidence 3467788999999999999999998322 1234566889999999999999999999888888777776 456667
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------------------hhHHH
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR--------------------FDEAI 302 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 302 (584)
.+.-++|.++...|.|++|+.+..+-+.+.++.++......+++++|.+|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999998775 34566
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007930 303 FSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382 (584)
Q Consensus 303 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 382 (584)
++|..-+++.+... +......++-+||..|+.+|+|+.|+.+-+.-+.+.++. | +....-.++.++|.++.-.|+
T Consensus 176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--G-DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--G-DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--h-hHHHHHHhhcccchhhhhhcc
Confidence 66666666666654 345567889999999999999999999999999998873 3 344556789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 383 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++.|+++|+..+.+..+. ++....+...+.+|..|.-..++++|+.|+++-+.+.+++++.... ..+++.||..+..
T Consensus 251 fe~A~ehYK~tl~LAiel-g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe--~RacwSLgna~~a 327 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIEL-GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE--LRACWSLGNAFNA 327 (639)
T ss_pred cHhHHHHHHHHHHHHHHh-cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHh
Confidence 999999999999998887 7777778888999999999999999999999999999988765543 6789999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
.|..++|+.+.++.+++..++.++ .....+..+|...-...|..+.
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~--sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDT--SGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCc--chhhhhhhhhHHHHHHhCCCcc
Confidence 999999999999999998887653 2344566777777777776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-23 Score=197.03 Aligned_cols=318 Identities=15% Similarity=0.114 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
....+.+|..+...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..+++++.. ......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~ 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence 3455667888999999999999999999875432 346889999999999999999999987652 001112
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|++.+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 23467899999999999999999999999875 5667788999999999999999999999998876422
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.........+..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++..
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 1222345567889999999999999999999999876543 456778999999999999999999999875
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+.....++..++.++...|++++|+..++++++. +|+.. .+..++.++...|++++|...+++++
T Consensus 244 -----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 244 -----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred -----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22233567888999999999999999999999987 55553 44889999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHH--hchHHHHHH---HHHHHHHhhhhhhhH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKE--TGRARNRKG---KSLENLLDSNAYRVK 570 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~---~~l~~~~~~~~~~~~ 570 (584)
+. +|+.......++..+.. .|+..++.. ..++..+..+|+...
T Consensus 310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred Hh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 97 78776554444433322 457777762 344444556665443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=196.37 Aligned_cols=310 Identities=17% Similarity=0.109 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 198 RVAETCRYLAEAHIQAM--QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.....+..+|..|.... +..+|+..|++.-.. .....+++..+|..|+.+++|++|..+|+.+-+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~---- 382 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI---- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 34556667777665443 556788887772221 1223467899999999999999999999987553
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.|....-.-....+++.+.+--+---+.+..++. ++..+.+|..+|.+|..+++++.|+++|++++.+.+
T Consensus 383 --~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 383 --EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred --ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 2322222233344444444332222222333333 688899999999999999999999999999999863
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
..+.+|..+|.=+.....+|.|..+|+.|+.+.++. ..+|+.+|.+|.++++++.|+-.|++|+
T Consensus 453 ---------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 453 ---------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred ---------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 357889999999999999999999999999988777 6789999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
++ .|........+|.++.+.|+.++|+.+|++|+.+ +|...-..+..|.++..++++++|+..+
T Consensus 517 ~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 517 EI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred cC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 96 5556788999999999999999999999999999 8888889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 516 EYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 516 ~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
++..++ .|+...+++.+|.+|.+.|+.+.|+ ..+..+.+.+|....
T Consensus 581 EeLk~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 581 EELKEL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCccch
Confidence 999998 8999999999999999999999999 888899988887655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-22 Score=172.08 Aligned_cols=343 Identities=14% Similarity=0.083 Sum_probs=260.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-----------------------------HHHH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL-----------------------------AEAH 210 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-----------------------------a~~~ 210 (584)
.++..|.++...|....|+..+..++.. .|....+|..| +.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 4788999999999999999999988764 24444444433 3444
Q ss_pred HHhCCHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEI-HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
....+.++++.-++..... ++. ...+-...|.+...+.++++|+..|+...+ ++|....-.....
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~--------~~~i~~~~A~~~y~~rDfD~a~s~Feei~k------nDPYRl~dmdlyS 303 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPN--------SMYIKTQIAAASYNQRDFDQAESVFEEIRK------NDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCc--------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------cCCCcchhHHHHh
Confidence 4444455555444444333 111 112345567777778888888888876544 2333333333344
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
++++-..+-.+---..+.+..+ +...+.+...+|+.|...++.++|+.+|++++++.+ ....+
T Consensus 304 N~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp---------~~~~a 366 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP---------KYLSA 366 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc---------chhHH
Confidence 4444444433322233333333 455566677789999999999999999999999964 45789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
|..+|.-|..+++...|++.|+.|+++.|.. ..+|+.+|..|.-++-..=|+-+|++|... .|..
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnD 431 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPND 431 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCc
Confidence 9999999999999999999999999998877 678899999999999999999999999985 4556
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...|..||.+|.+.++.++|+++|.+++.. ......++..||.+|.++++.++|..+|++.++.. ..-|..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~ 502 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEI 502 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhhccc
Confidence 789999999999999999999999999997 33455799999999999999999999999999976 556666
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.|++..+..-|+.-+.+.+++++|. .+...++.-++
T Consensus 503 ~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 503 DDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGET 538 (559)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCc
Confidence 8889999999999999999999998 66666665433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=209.81 Aligned_cols=386 Identities=13% Similarity=0.030 Sum_probs=300.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
.....+. +.++...+..-.+. .|.....+..++......|++++|..+|+++....... .- +. .
T Consensus 351 ~~~~~~~-~~~~~~~~~~~y~~---------~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-~~---~ 414 (987)
T PRK09782 351 VSVATRN-KAEALRLARLLYQQ---------EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA--RL-SQ---T 414 (987)
T ss_pred hccccCc-hhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc--cc-CH---H
Confidence 3444466 67777766664431 24456677789999999999999999999998752111 01 11 1
Q ss_pred HHHHHHHHHHhcCC---hHHH----------------------HHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHH
Q 007930 160 GYMQLGDTCSSMGL---LDRS----------------------VWCYESGLEIQIEALGDSDPR--VAETCRYLAEAHIQ 212 (584)
Q Consensus 160 ~~~~l~~~~~~~g~---~~~A----------------------~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~ 212 (584)
....++.+|...+. ..++ ...+..+... .+ ..|. ...++..+|.++..
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh
Confidence 23366666666654 2333 2222222222 22 2355 78899999999987
Q ss_pred hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 007930 213 AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY 292 (584)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 292 (584)
+++.+|+..+.+++...|.. .....+|.++...|++++|+..++++... .+. ...+..+|.++
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~---------~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~al 552 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDA---------WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTA 552 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCch---------HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHH
Confidence 89999999999998876531 12556777778999999999999986431 122 23467889999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
...|++++|+.+++++++. .|.....+..++......|++++|+..+++++++. |. ...+.+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------P~-~~a~~~ 614 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------PS-ANAYVA 614 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------CC-HHHHHH
Confidence 9999999999999999886 45556666667777777899999999999999874 22 568899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+..|++++.+.|+. ..++.++|.++...|++++|+..|+++++. .|....+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a 679 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPAL 679 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 9999999999999999999999997776 678889999999999999999999999995 4456789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.++|.++...|++++|+.+|++++++ .|+.+.+....|.+.....+++.|.+.+.++..+ .|.
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~ 743 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFD 743 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Ccc
Confidence 999999999999999999999999999 8899999999999999999999999999999887 666
Q ss_pred HHHHHHHHHHHHHHhchHHHH
Q 007930 533 IDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A 553 (584)
.. +....|.++...+++-.+
T Consensus 744 ~~-a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 744 SS-IGLRSGAMSTANNNVGGA 763 (987)
T ss_pred ch-hccccchHhhhcccccCC
Confidence 65 777788888877776443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-22 Score=176.06 Aligned_cols=406 Identities=22% Similarity=0.227 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCc
Q 007930 73 FLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD 152 (584)
Q Consensus 73 ~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 152 (584)
-+...|...+..|+ |+.|+.+|.+|+.+ +|.....+.+...+|..+|+|++|++--.+.+++. ++
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l---------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIML---------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHcc---------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 45677889999999 99999999999987 33356677789999999999999999999988876 33
Q ss_pred hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCC-----------------
Q 007930 153 RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQ----------------- 215 (584)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 215 (584)
.+ ..|..+|..+.-+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 WA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred hh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 33 45999999999999999999999999998 78888888888887722210
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-------HHHHH-HcC-------
Q 007930 216 ----FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA-------SMVMI-ANG------- 276 (584)
Q Consensus 216 ----~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a-------~~~~~-~~~------- 276 (584)
+-.....|...++..+..+.. ...+.+ -.....+.-.+... ..... ...
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~-----l~~~l~-------d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 204 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTS-----LKLYLN-------DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQE 204 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHh-----hhcccc-------cHHHHHHHHHHhcCccccccccccccCCCCCCccccc
Confidence 001112222222222222110 000000 00011111111000 00000 000
Q ss_pred --------C------cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHH
Q 007930 277 --------Q------ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342 (584)
Q Consensus 277 --------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 342 (584)
+ ....+.-.-.+|...+...++..|++.|..++++ . .....+.+.+.+|+..|.+.+
T Consensus 205 ~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 205 HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHH
Confidence 0 0012445678999999999999999999999998 4 566778889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
.+....++++..... ..+...++.++..+|..|...++++.|+.+|++++..... ..+.....
T Consensus 276 c~~~c~~a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk 338 (539)
T KOG0548|consen 276 CIELCEKAVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLK 338 (539)
T ss_pred hhcchHHHHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHH
Confidence 999999988765432 1122335666777888999999999999999998765443 22233333
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
..++++...+...-+ .+..+.-...-|..++..|+|..|+.+|.+++.. +|+.+..|.+.|.||
T Consensus 339 ~~Ek~~k~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 339 EAEKALKEAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACY 402 (539)
T ss_pred HHHHHHHHHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHH
Confidence 334443333332221 1222333444466666666666666666666665 566666666666666
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 503 DALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.++|.+..|+...+.++++ +|....++.+-|.++..+.+|++|. ..++..++.+|+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~ 459 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSN 459 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchh
Confidence 6666666666666666665 5666666666666666666666666 5555555555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-22 Score=190.30 Aligned_cols=309 Identities=13% Similarity=0.066 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
..+..|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3666788999999999999999999988 67788899999999999999999999999887631 11122
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
....++..+|.+|...|++++|+..|++++.. .+....++..++.++...|++++|+..++++++.... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 33457899999999999999999999988653 4556678899999999999999999999998775211 00
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+.+++++++.... ...++..+|.++...|++++|++++++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---------CVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 1123456778999999999999999999999987422 3567889999999999999999999999876433
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ...++..++.+|...|++++|+..+++++... +.. ..+..++.++...|++++|+..++++++.
T Consensus 247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 23556788999999999999999999998851 222 23478999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYILKV 521 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~ 521 (584)
.|+.......++..+.. .|+..+|+..+++.++.
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 77776544444433322 56899999999988863
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-21 Score=170.42 Aligned_cols=353 Identities=17% Similarity=0.160 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC-----------Cch--------h-hhHHHHHHHHHHHHHhcCCh
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG-----------SDR--------A-LAKFSGYMQLGDTCSSMGLL 174 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~--------~-~~~~~~~~~l~~~~~~~g~~ 174 (584)
...++..|.++...|....|+..|..++...+-..+ ... + ...+..-..++.++....+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 445667777787888888887777776653211000 000 0 01112234556667766677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007930 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254 (584)
Q Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 254 (584)
++++.-++..... .-|.....-...|.+...+.++++|+..|+...+..|- ...... ....++.-
T Consensus 244 ~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-----Rl~dmd---lySN~LYv 308 (559)
T KOG1155|consen 244 EEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-----RLDDMD---LYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cchhHH---HHhHHHHH
Confidence 7777666555544 13555566677889999999999999999998876432 222222 23333333
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
..+-. .+.++-+ .... .+.....+...+|+.|...++.++|+.+|++|+++ +|....+|..+|.-|
T Consensus 309 ~~~~s-kLs~LA~--~v~~---idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 309 KNDKS-KLSYLAQ--NVSN---IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY 374 (559)
T ss_pred HhhhH-HHHHHHH--HHHH---hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH
Confidence 33222 1222211 1111 13334455677899999999999999999999999 899999999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
..+.+...|++.|+.|+++.+. .-.+|+.||+.|..++-+.=|+-+|++|....|.. ..++..|
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~---------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-------sRlw~aL 438 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPR---------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND-------SRLWVAL 438 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCch---------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-------hHHHHHH
Confidence 9999999999999999999743 46899999999999999999999999999987665 6788899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
|.+|.+.++.++|+++|.+++.. ......++..+|.+|...++.++|..+|++.++.. ...+...+....+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHH
Confidence 99999999999999999999984 23346899999999999999999999999999976 3445556778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...|+.-+.+.+++++|..+..+++.-
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 899999999999999999998888774
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=176.22 Aligned_cols=408 Identities=16% Similarity=0.151 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH------H
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV------V 145 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~ 145 (584)
.-.+-+|++++..|+ ++.|......-. + ......+.+..+.++....++++|...+.++-.. .
T Consensus 50 ~d~~~~aq~l~~~~~-y~ra~~lit~~~-l---------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 50 ADIYWLAQVLYLGRQ-YERAAHLITTYK-L---------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHhh-h---------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 334667888888888 887776655442 1 1223567778899999999999999988843111 0
Q ss_pred Hhc---------cCCc-hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh----------------------C
Q 007930 146 DIG---------KGSD-RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL----------------------G 193 (584)
Q Consensus 146 ~~~---------~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------~ 193 (584)
++. .+.. ........++..|.+|....++++|...|.+|+..-...+ +
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLES 198 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhc
Confidence 000 0000 0111224567778899999999999999988865410000 0
Q ss_pred -------CCC--------------------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 194 -------DSD--------------------------------PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 194 -------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
..+ ....+.+...+..++..++|.+..+..+..++..|-+.
T Consensus 199 l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~ 278 (611)
T KOG1173|consen 199 LDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL 278 (611)
T ss_pred ccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc
Confidence 000 00112223334444455555555555555555443332
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
.- .-..+| ++...|+..+-...-.+.+ ...|..+..|+.+|..|...|++.+|.++|.++..+
T Consensus 279 ~~-------~~~~ia-~l~el~~~n~Lf~lsh~LV------~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--- 341 (611)
T KOG1173|consen 279 PC-------LPLHIA-CLYELGKSNKLFLLSHKLV------DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--- 341 (611)
T ss_pred ch-------HHHHHH-HHHHhcccchHHHHHHHHH------HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc---
Confidence 11 122233 3334443332222222111 146677778899999999999999999999999998
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
++..+.+|...|..+...|+.++|+..|..|-++.+. ..- -...+|.-|...++++-|.++|.+|+
T Consensus 342 -----D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G----~hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 342 -----DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG----CHL-----PSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred -----CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC----Ccc-----hHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999754 222 34468888999999999999999999
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.+.|.. ..++..+|.+.+..+.|.+|..+|+.++...+....... .+...+.+||.++.+++++++|+.+|+
T Consensus 408 ai~P~D-------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 408 AIAPSD-------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred hcCCCc-------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 998877 467788999999999999999999999987777766554 466789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+++.+ .|..+.++..+|.+|..+|+++.|+++|.+++.+ .|++..+-..|+.+..
T Consensus 480 ~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--------~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--------KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--------CCccHHHHHHHHHHHH
Confidence 99999 8889999999999999999999999999999998 7777666655654443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=190.98 Aligned_cols=301 Identities=17% Similarity=0.151 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 159 SGYMQLGDTCSSM--GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 159 ~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
..+..+|..|... -+..+|+..|++.-.. +++...++..+|..|+.+++|++|..+|+.+-+..|-..+.
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4566666666544 4557777777773222 56777999999999999999999999999998876644322
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
.-....+++.+.+ +-++.++-+- + ...++.....|..+|.+|..+++++.|+++|++|+++
T Consensus 390 --------meiyST~LWHLq~-~v~Ls~Laq~--L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 390 --------MEIYSTTLWHLQD-EVALSYLAQD--L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred --------hhHHHHHHHHHHh-hHHHHHHHHH--H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 2222333333322 1222333221 1 1246677889999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+|..+.+|..+|.=+....++|.|..+|++++.+..+ ...+|+.+|.+|.++++++.|.-+|++|+++
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---------hhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 7999999999999999999999999999999988633 4689999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.|.. ..+...+|.++.+.|+.++|+.+|++|+.+ .+......+..|.++...+++++|+..+++.
T Consensus 519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 8776 556778999999999999999999999985 3344577889999999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++ -|+...+++.+|.+|.++|+.+.|+..|.-|.++
T Consensus 584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 998 8999999999999999999999999999999988
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-21 Score=198.01 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
|+.+...|...|++++|++.|++... .+-.++. .++..+...+...|++++|.+.+..+++. ..+...
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~ 360 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDI 360 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCe
Confidence 44555555555555555555543321 1222221 23444555555555555555555544433 122333
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
.++..+...|.+.|++++|...|++..+. ...+|+.+...|...|+.++|++.|++..+. +..
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~ 423 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVA 423 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence 44555566666666666666665543210 1345666666677777777777777665532 211
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+. ..++..+...+.+.|+.++|.++|+...+.. +. .| ....|..+..++.+.|++++|.+.+++.
T Consensus 424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~--~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-------- 488 (697)
T PLN03081 424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RI--KP-RAMHYACMIELLGREGLLDEAYAMIRRA-------- 488 (697)
T ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC--CC-CccchHhHHHHHHhcCCHHHHHHHHHHC--------
Confidence 21 2345556666667777777777776655421 11 11 1245666777777777777777766542
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
+..|+ ..+|..|...+...|+.+.|...+++.+++ .|+....+..|..+|...|++++|. +.++.+.+
T Consensus 489 -~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~ 556 (697)
T PLN03081 489 -PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKR 556 (697)
T ss_pred -CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHH
Confidence 11343 346777777788888888888877777665 6776778889999999999999998 66665553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-21 Score=172.91 Aligned_cols=445 Identities=15% Similarity=0.124 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
..-...+-+....+.+ |.-|+-+.++...+ . .+|.. .+.+|.+++-.|+|..|......-. +
T Consensus 16 ~~~~~~~~r~~l~q~~-y~~a~f~adkV~~l------~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~-l------ 77 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHR-YKTALFWADKVAGL------T-NDPAD---IYWLAQVLYLGRQYERAAHLITTYK-L------ 77 (611)
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHHHHHhc------c-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhh-h------
Confidence 3344445556666777 88888888887765 2 33333 3478999999999999888776541 1
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH------HHH----h-----CCC--ChHHHHHHHHHHHHHHHh
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ------IEA----L-----GDS--DPRVAETCRYLAEAHIQA 213 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~----~-----~~~--~~~~~~~~~~la~~~~~~ 213 (584)
....+.+.+..+.++....++++|...+..+-... .+. . +++ .......++..|.+|...
T Consensus 78 ---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al 154 (611)
T KOG1173|consen 78 ---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL 154 (611)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhh
Confidence 11122457788999999999999998887441110 000 0 000 011234566678889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHH---------HhccHHHHHHHHHHHHHHHH-------HcC
Q 007930 214 MQFDEAENLCKKILEIHREHGHSASLEEAADRRLMA-LVYE---------AKADYESALEHLVLASMVMI-------ANG 276 (584)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~-~~~~---------~~g~~~~A~~~~~~a~~~~~-------~~~ 276 (584)
.++++|...|.+++-........-.... ......+ .... ..+...+-++.+-+....-. ..+
T Consensus 155 ~n~~~ar~~Y~~Al~~D~~c~Ea~~~lv-s~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 155 DNREEARDKYKEALLADAKCFEAFEKLV-SAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred ccHHHHHHHHHHHHhcchhhHHHHHHHH-HHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 9999999999999866544332100000 0000000 0000 01111111111111100000 000
Q ss_pred -----CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH--------------Hh------------hcCCcccHHH
Q 007930 277 -----QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK--------------AT------------RGEDHLSVAS 325 (584)
Q Consensus 277 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------~~------------~~~~~~~~~~ 325 (584)
.......+....+..++..++|.+..+..+..++... +. .-...|..+.
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~ 313 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL 313 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc
Confidence 0112344555566666666666666666665554300 00 0113688888
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
.|+..|..|...|++.+|..+|.++..+.. ..+.+|...|..+...|..++|+..|..|-++.+...-
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~---------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--- 381 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDP---------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--- 381 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCc---------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---
Confidence 999999999999999999999999988853 35789999999999999999999999999998876522
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
-...+|.-|...++++-|..+|.+|+.+. |..+.++..+|.+.+..+.|.+|..+|+.++...+....
T Consensus 382 ----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 382 ----PSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 22368899999999999999999999973 345678999999999999999999999999977666544
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.. +.....+.+||.++.+++.+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|+ ..+.++|...
T Consensus 450 e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~ 519 (611)
T KOG1173|consen 450 EK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALK 519 (611)
T ss_pred cc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcC
Confidence 33 345678999999999999999999999999998 8999999999999999999999999 8888888887
Q ss_pred hhhhHH
Q 007930 566 AYRVKK 571 (584)
Q Consensus 566 ~~~~~~ 571 (584)
|+.+..
T Consensus 520 p~n~~~ 525 (611)
T KOG1173|consen 520 PDNIFI 525 (611)
T ss_pred CccHHH
Confidence 776443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-19 Score=181.84 Aligned_cols=417 Identities=11% Similarity=0.026 Sum_probs=262.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
++.....+...-..+.+.|+ +++|+..+++.... ..-+.....+..+...+...|..++|..+++....
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~-------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR-------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC-------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 33334445555556668898 89888888776542 11111233334455566677788888777665321
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.. .+|..+-..+...|++++|...++++.+.. ......++..+...|.+.|++++|.++|+++
T Consensus 435 -------pd~--~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 435 -------PTL--STFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred -------CCH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 111 346667777778888888888777765541 1123456677777778888888888887776
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
.+... .+ ...+|..+...|.+.|++++|++.|.+... .+..|+ ..+|..+...|.+.|++++|.+.+.
T Consensus 499 ~~~Gv---~P----dvvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 499 VNAGV---EA----NVHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHcCC---CC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 54211 11 124577777778888888888877765432 233333 3466777777788888888888777
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
+....... -.| ...++..+...|.+.|++++|.+.|++..+..-. ....+|+.+...|.+.|++++|
T Consensus 567 eM~~~~~g----i~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~--------p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 567 EMKAETHP----IDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--------GTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHhcCC----CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------CChHHHHHHHHHHHhcCCHHHH
Confidence 76542100 012 2456677777788888888888888776654211 1235677777778888888888
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
...|++..+. +..+. ..++..+...|.+.|++++|.++++++.+. +. .....++..+...|.+.|++
T Consensus 634 l~lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~---~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 634 LSIYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GI---KLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC---CCCHHHHHHHHHHHHhCCCH
Confidence 8877776543 22222 345667777778888888888877776642 11 11245677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|.++|++.... + ..|+ ..+|..+...|.+.|++++|.++|++.... | -.|+ ..++..+...+.+
T Consensus 701 eeA~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k 766 (1060)
T PLN03218 701 KKALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL-----G-LCPN-TITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHH
Confidence 8888877776543 1 1343 356777777888888888888887776543 1 1233 3556666677777
Q ss_pred hchHHHHHHHHHHHHHh
Q 007930 547 TGRARNRKGKSLENLLD 563 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~ 563 (584)
.|+.++|. ..+..+++
T Consensus 767 ~G~le~A~-~l~~~M~k 782 (1060)
T PLN03218 767 KDDADVGL-DLLSQAKE 782 (1060)
T ss_pred CCCHHHHH-HHHHHHHH
Confidence 88888777 55555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-21 Score=181.86 Aligned_cols=353 Identities=16% Similarity=0.115 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
+..++..|...+..|++++|...+.+++.. +|....+|..||.+|..+|+.+++....-.|-.+.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence 456888899999999999999999999998 899999999999999999999999998887776665544
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
..|..++.....+|++++|.-+|.+|++. .|.........+.+|.+.|+...|...|.+.+......
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 34999999999999999999999999985 66667888999999999999999999999999882100
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK-- 395 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 395 (584)
+...........+..+...++-+.|++.++.++...... .....++.++.++.....++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 011223334455778888888899999999999843221 1234556788999999999999887766554
Q ss_pred --------------------HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 007930 396 --------------------LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQ 455 (584)
Q Consensus 396 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (584)
+.+-..+....+..+...++.+..+.++..+++..+..--.. ........+..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d 419 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD 419 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence 111111112222224556666666777776666555432221 23345688999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
++.++...|++.+|+.+|..+... + ......+|+.+|.||..+|.+++|+++|++++.+ .|++.+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999988774 1 2234679999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
+...|+.++.++|+.++|. ..++.+...+
T Consensus 485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D 513 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKAL-ETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHhcCCHHHHH-HHHhcccCCC
Confidence 9999999999999999999 6777666444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-20 Score=156.88 Aligned_cols=381 Identities=15% Similarity=0.094 Sum_probs=256.5
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 007930 110 QELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189 (584)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 189 (584)
.++..+.-+..+|..++..|++.+|+..|..|++..+. .. .+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-----~Y----~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-----NY----QAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-----hH----HHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 34556777889999999999999999999999976422 22 45889999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 190 EALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLAS 269 (584)
Q Consensus 190 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~ 269 (584)
.|+...+....|.++.++|++++|+.-|..+++..+..... . .+...++.+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~---~--eaqskl~~~------------------ 152 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV---L--EAQSKLALI------------------ 152 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh---H--HHHHHHHhH------------------
Confidence 79999999999999999999999999999999876644321 0 001111100
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 270 MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.....+......++..|+...|+.+....+++ .|..+..+...+.+|...|+...|+.-++.
T Consensus 153 ----------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 153 ----------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred ----------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01112223333445556666666666666665 455666666666666666666666666666
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH---------HHHHHHHH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA---------QMGVMLYV 420 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------~l~~~~~~ 420 (584)
+-++... ....++.++.+++..|+.+.++...++++++.++...- ...|. .-+.-...
T Consensus 215 askLs~D---------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 215 ASKLSQD---------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHhcccc---------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 6555322 13455566666666666666666666666655443110 00111 11223344
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++|.++++..++.++.- +...+........+..|+...|++.+|+....+++.+ .|+.+.++...+.
T Consensus 282 ~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAE 349 (504)
T ss_pred hhhHHHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHH
Confidence 566667777776666531 1112223345566778888889999999999999998 8888999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhHhhcC
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGF 580 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~~ 580 (584)
+|..-..|+.|+..|++|.++ ++++..+...+-.+-....+.. + ..+-+++....+....++.++|+++
T Consensus 350 A~l~dE~YD~AI~dye~A~e~--------n~sn~~~reGle~Akrlkkqs~--k-RDYYKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL--------NESNTRAREGLERAKRLKKQSG--K-RDYYKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHhc--c-chHHHHhhhcccccHHHHHHHHHHH
Confidence 999999999999999999997 6666666655544332221111 1 3444666666667777788888877
Q ss_pred CCCC
Q 007930 581 GFRT 584 (584)
Q Consensus 581 ~~~~ 584 (584)
..+|
T Consensus 419 AqkW 422 (504)
T KOG0624|consen 419 AQKW 422 (504)
T ss_pred HHhc
Confidence 6554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-20 Score=170.24 Aligned_cols=435 Identities=15% Similarity=0.090 Sum_probs=326.2
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
...++-.+...+...|+ ++.+.+.|++++.. .-...+.|+.++.+|...|.-..|+.+.++.+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~---------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~-- 389 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQ-FEVLAEQFEQALPF---------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ-- 389 (799)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHh---------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC--
Confidence 44455566667777888 88888888888865 2234667888999999999999999998887765421
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC-----------CHHH
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM-----------QFDE 218 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~ 218 (584)
+.++. ..++.-..|....+.+++++.+..+++...... .......++..+|.+|..+- ...+
T Consensus 390 -ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 390 -PSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred -CCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 22222 224455567778899999999999999976332 23345667778888775432 2446
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 298 (584)
++..++++++..+.+. .+.+.++.-|..+++.+.|+++..+++.+ +..+...++..++.++...+++
T Consensus 463 slqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhhh
Confidence 6777777777655444 35889999999999999999999999876 3556678889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE 378 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 378 (584)
.+|+...+.+++-+ +.+......-..+-...++.++|+..+...+.+.+...+-...-+........+.+..
T Consensus 530 ~~Al~vvd~al~E~--------~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 530 KEALDVVDAALEEF--------GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHHHHHHHHHHHHh--------hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 99999999999874 3333333444455556899999999999999988743211000111222233344444
Q ss_pred HhcCHHHHHHHHHHHHHHHHhC----------------CC---CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDT----------------PG---YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~----------------~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
..++..+|.+.+.++....... ++ .+......+...+..+...++.++|..++.++-.+
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-- 679 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-- 679 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--
Confidence 4556666776666665544321 01 01123445667888999999999999999999885
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH--HHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE--ILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~ 517 (584)
.+.....|+..|.++...|+.++|.+.|..|+.+ +|+...+...+|.++...|+..-|.. .+..
T Consensus 680 ------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 680 ------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred ------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 3556889999999999999999999999999999 88888999999999999999988888 9999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 518 ILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 518 a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
++++ +|.+.++|+.||.+...+|+.++|. .++..++...+..+
T Consensus 746 alr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 746 ALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEESNP 788 (799)
T ss_pred HHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccCCC
Confidence 9998 9999999999999999999999998 99998887655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-20 Score=174.62 Aligned_cols=392 Identities=16% Similarity=0.128 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...+...|+..+..|++++|+..+.+++...+ ..+ ..|..||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-----~~~----~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-----RNP----IAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-----cch----hhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 55666788888999999999999999998863 333 34999999999999999999998888777
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
+|.....|..++.....+|++.+|.-+|.++++..|... ...+..+.+|.++|+...|+..|.+.+....
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 666679999999999999999999999999999877654 3478889999999999999999998876532
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
..+...........+..+...++-+.|++.++.++.... .......+..++.++.....++.|...........
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 001112333345557778888888999999999888321 23334456678899999999999988877665511
Q ss_pred hcC--------------------CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 355 AKP--------------------APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 355 ~~~--------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
.+. .+..-...+..+...++.+..+.++..+++..+..--. -........+..+
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------~~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------VWVSDDVDLYLDL 420 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------CChhhhHHHHHHH
Confidence 000 00111122222355566666666666666655432111 1133346788899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
+.++...|++.+|+.+|..+... .....+.+|..+|.||..+|.+++|+++|++++.. .|+..++
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~ 485 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA 485 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence 99999999999999999988763 22234679999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVRE-EKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
...|+.++.++|++++|.+.++....--. ..-+...+...........++...|+.++-+....+
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999888877441100 000011233456778889999999999987643333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-19 Score=175.16 Aligned_cols=408 Identities=10% Similarity=-0.035 Sum_probs=293.9
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
|..+...+..+.+..+.|+++.|+..|+++++.. +..+.. ...+..++...|+.++|+.++++++.-
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~a----v~dll~l~~~~G~~~~A~~~~eka~~p---- 97 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQ----VDDWLQIAGWAGRDQEVIDVYERYQSS---- 97 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhh----HHHHHHHHHHcCCcHHHHHHHHHhccC----
Confidence 4456677788999999999999999999999875 333211 126677777889999999999999832
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+.....+..+|.++...|++++|++.|+++++..|... .++..++.++...++.++|++.++++...
T Consensus 98 ----~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 98 ----MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--------DLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 344556666678899999999999999999999877653 33667889999999999999999987653
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHH---
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE--- 348 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--- 348 (584)
.+.... +..++.++...++..+|+..++++++. .|.....+..+..+....|-...|.+...
T Consensus 166 ------dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 166 ------DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred ------CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 333222 244566666677887799999999988 56666666655555555554443333322
Q ss_pred --------------------------------------HHHHHHhcCC-----CCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 349 --------------------------------------NALRVCAKPA-----PATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 349 --------------------------------------~al~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
+++....... ....++....+....-.++...|++.+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1221111100 011223334455555666777888888
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
++..|+....... ..+ ..+....|..|...++.++|+.+|++++.-..... ..+........|..++...++
T Consensus 311 vi~~y~~l~~~~~----~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 311 LIKEYEAMEAEGY----KMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHHHHHHhhhcCC----CCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhccc
Confidence 8888876543221 122 34556789999999999999999999876321110 111122334677888999999
Q ss_pred HHHHHHHHHHHHHHHH-HH--h----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 466 INEATELFEEARGVLE-QE--C----GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
+++|..++++..+... .. . ...+|+..+....++.++...|+..+|++.+++.+.. .|.+...+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~ 454 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRI 454 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 9999999999887321 00 1 1357888899999999999999999999999999987 899999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhH
Q 007930 539 RLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKR 576 (584)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~ 576 (584)
.+|.++...|.+.+|. ..++.++..+|.....+..+.
T Consensus 455 ~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 455 ALASIYLARDLPRKAE-QELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHhhhCCccHHHHHHHH
Confidence 9999999999999999 777888877887666554333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-19 Score=179.70 Aligned_cols=295 Identities=15% Similarity=0.067 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..+|..+...|...|++++|+.+|++..+.. ..+ ...++..+...+...|++++|.+.+...++. + .+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g-~~ 357 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSI----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----G-FP 357 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhccchHHHHHHHHHHHHh----C-CC
Confidence 4567777777888888888888887765421 111 1246888899999999999999999876542 2 22
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+...|.+.|++++|...|++..+ ....+|+.+...|...|+.++|++.|++..+....
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--- 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR-----------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--- 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 3345678899999999999999999987532 23457899999999999999999999998765322
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
|+ ..++..+...+...|..++|.++|+...+...-. +. ...|..+..++.+.|++++|.+.+++.-
T Consensus 424 ----Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~----p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~---- 489 (697)
T PLN03081 424 ----PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK----PR-AMHYACMIELLGREGLLDEAYAMIRRAP---- 489 (697)
T ss_pred ----CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----CC-ccchHhHHHHHHhcCCHHHHHHHHHHCC----
Confidence 22 4568888889999999999999999877542211 11 3456788999999999999999876531
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
..+ ...+|..+...+...|+++.|...+++.+++ .|+....|..++.+|...|++++|.+.+++..
T Consensus 490 -----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 490 -----FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred -----CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122 2457899999999999999999999998876 66666788999999999999999999999877
Q ss_pred HHHHHH-h-----------------CCCChhHHHHHHHHHHHHHHhc
Q 007930 520 KVREEK-L-----------------GTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 520 ~~~~~~-~-----------------~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+.--+. . +..||...+.+..+..+..+..
T Consensus 556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 542110 0 1247777777776666665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-17 Score=169.49 Aligned_cols=342 Identities=13% Similarity=0.073 Sum_probs=248.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+-..+...|+ +++|...+++..+. ...|+ ...+..+...|.+.|+.++|..+|+++.+.. . .+.
T Consensus 442 ~LL~a~~k~g~-~e~A~~lf~~M~~~-------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v-~Pd 506 (1060)
T PLN03218 442 MLMSVCASSQD-IDGALRVLRLVQEA-------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V-EAN 506 (1060)
T ss_pred HHHHHHHhCcC-HHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-CCC
Confidence 33444555566 66666666655442 12222 4566778888888999999998888876431 1 111
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
..+|..+...|.+.|++++|+..|.+.... .-.|+ ..+|..+...|.+.|++++|.++++++........
T Consensus 507 --vvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~- 576 (1060)
T PLN03218 507 --VHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID- 576 (1060)
T ss_pred --HHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-
Confidence 145788888899999999999988887654 11233 46788888899999999999999988865311111
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
++ ..++..+...|.+.|++++|.+.|++..+. .......+|..+...|.+.|++++|+.+|.+..+.
T Consensus 577 PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---- 643 (1060)
T PLN03218 577 PD----HITVGALMKACANAGQVDRAKEVYQMIHEY-----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---- 643 (1060)
T ss_pred Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Confidence 11 245788888999999999999999876432 22233467888999999999999999999987653
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.......++..+...+...|++++|.++++++.+.... + ...++..+...|.+.|++++|.+.|++...
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-------p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-------L-GTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12223567888999999999999999999998765321 1 246888999999999999999999988654
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
. +..+. ..+|..+...|.+.|++++|.++|++.... +- .| ...++..+...+...|++++|..++.+
T Consensus 713 ~-----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi--~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 713 I-----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL----GL--CP-NTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred c-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 22222 356888999999999999999999987642 11 12 245777788899999999999999999
Q ss_pred HHHH
Q 007930 476 ARGV 479 (584)
Q Consensus 476 a~~~ 479 (584)
+++.
T Consensus 780 M~k~ 783 (1060)
T PLN03218 780 AKED 783 (1060)
T ss_pred HHHc
Confidence 8775
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-17 Score=172.98 Aligned_cols=417 Identities=16% Similarity=0.071 Sum_probs=298.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 154 (584)
...+..+...|+ +.+|+.++..+- +.......+...+......|++..+..++...-... . ..++
T Consensus 345 ~raa~~~~~~g~-~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~---~~~~ 409 (903)
T PRK04841 345 RAAAEAWLAQGF-PSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-L---LENP 409 (903)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-H---hcCc
Confidence 333444455555 555555443321 233445666677888888898887777665531111 0 1112
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSD-PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
. .....+.++...|++++|...+..+...........+ .....+...++.++...|++++|...+++++...+..
T Consensus 410 ~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 410 R----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT 485 (903)
T ss_pred c----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 1 2455677788999999999999988766432110111 2244566678889999999999999999998753221
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 234 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
.....+.+...+|.++...|++++|...+.+++......+.......++..+|.++...|++++|...+++++....
T Consensus 486 ---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 486 ---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred ---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 22334556788999999999999999999999998887777767777889999999999999999999999999987
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 314 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
...+...+.....+..+|.++...|++++|...+.+++.+.... + ......++..++.++...|++++|...+.++
T Consensus 563 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 563 EQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY--Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc--C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76543334445567788999999999999999999999987642 1 2234567788999999999999999999999
Q ss_pred HHHHHhCCCCcccH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHH
Q 007930 394 MKLLEDTPGYHSTI-AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472 (584)
Q Consensus 394 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (584)
..+.... +..... ..........+...|+.+.|...+...... ...........+..++.++...|++++|...
T Consensus 639 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 639 ENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876554 211111 111111234455678999988887664431 0011111223456789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+++++...+.... ....+.++..+|.++...|+.++|...+.+++++...
T Consensus 714 l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 714 LEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999998665433 3456778899999999999999999999999998643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=153.59 Aligned_cols=280 Identities=15% Similarity=0.069 Sum_probs=232.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh-hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
|....+++. .+++...+...|.......+++........+. ....+--..+|.||..+|-+.+|...++.+++.
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--- 252 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--- 252 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---
Confidence 455555543 45667788888888777777665432222221 122233568999999999999999999999887
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
....+.+..|+.+|....+...|+..+.+.++.+|... ..+..++.++..++++++|+++|+.+++
T Consensus 253 ------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--------T~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 253 ------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--------TYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred ------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--------hhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 23457788899999999999999999999998776543 4478899999999999999999999887
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
. ++...++...+|.-|+..++.+-|+.+|++.+++ .......+.++|.|+...++++-++..|+++
T Consensus 319 ~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--------G~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 319 L------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM--------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred c------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh--------cCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 4 6666677777888999999999999999999998 5667889999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+....+ +...+++|+++|.+....|++.-|..+|+-++...++. ..+++++|.+-.+.|+.++|..+
T Consensus 385 lstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-------~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 385 LSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-------GEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HhhccC------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-------HHHHHhHHHHHhhcCchHHHHHH
Confidence 998754 34568999999999999999999999999988765554 78899999999999999999999
Q ss_pred HHHHHHH
Q 007930 431 FESAVVK 437 (584)
Q Consensus 431 ~~~a~~~ 437 (584)
++.+-..
T Consensus 452 l~~A~s~ 458 (478)
T KOG1129|consen 452 LNAAKSV 458 (478)
T ss_pred HHHhhhh
Confidence 9998875
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-18 Score=151.43 Aligned_cols=396 Identities=18% Similarity=0.176 Sum_probs=259.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
+|...-.+.++..++...|+ |++|+.-..+.+++ .|+.+..|..+|..++-+|+|++|+..|.+.++..+
T Consensus 32 ~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l---------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~ 101 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRL---------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP 101 (539)
T ss_pred CCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhc---------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 44455567778888899999 99999999999986 677899999999999999999999999999998753
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcC---------------------ChHHHHHHHHHHHHHHHHHhCCCChHHHHHH--
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMG---------------------LLDRSVWCYESGLEIQIEALGDSDPRVAETC-- 203 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-- 203 (584)
. ... .+..++.++.... ++......|...++..++ .|.....+
T Consensus 102 ~-----n~~----L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~-----~p~~l~~~l~ 167 (539)
T KOG0548|consen 102 S-----NKQ----LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK-----NPTSLKLYLN 167 (539)
T ss_pred c-----hHH----HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-----CcHhhhcccc
Confidence 2 221 2344444441110 001111122222222211 11111111
Q ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC------------CC------HHHHHHHHHHHHHHHHhccHHH
Q 007930 204 -----RYLAEAHIQAMQFDEAENLCKKILEIHREHGHS------------AS------LEEAADRRLMALVYEAKADYES 260 (584)
Q Consensus 204 -----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~------~~~a~~~~~l~~~~~~~g~~~~ 260 (584)
..++.+.. .+.. ..+.......+....+ +. ...+.-...+|.......++..
T Consensus 168 d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 168 DPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 01111000 0000 0000000000000000 00 1135567789999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH
Q 007930 261 ALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 261 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 340 (584)
|+++|..++.+ . .....+.+.+.+|+..|.+.+.+....++++...+.... ....+.++..+|..|...+++
T Consensus 243 a~q~y~~a~el------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 243 AIQHYAKALEL------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHHHHhH------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhHHhH
Confidence 99999999886 3 455667889999999999999999998888765443211 233566666788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
+.|+.+|++++...+. ..+.......++++...+...-+.+.. +.-...-|..++.
T Consensus 315 ~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-------A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK-------AEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH-------HHHHHHHHHHHHh
Confidence 9999999998876543 222333334444444433332222221 3333455888888
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.|+|..|+..|.+++.. .|..+..|.+.|.+|..+|++..|+...+.++++ +|....+|..-|.
T Consensus 371 ~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGA 434 (539)
T ss_pred ccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHH
Confidence 88888888888888773 4556788888888888888888888888888888 8888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
++..+.+|++|.+.|+++++. +|...++...+.+++..+
T Consensus 435 al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 888888888888888888887 788888777777777754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=173.95 Aligned_cols=401 Identities=14% Similarity=0.042 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..+..+...+.+.|+ +++|...|++... ++ ..+|+.+...|.+.|++++|+.+|.+..... ..+
T Consensus 223 ~~~n~Li~~y~k~g~-~~~A~~lf~~m~~---------~d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~P 286 (857)
T PLN03077 223 DVVNALITMYVKCGD-VVSARLVFDRMPR---------RD---CISWNAMISGYFENGECLEGLELFFTMRELS---VDP 286 (857)
T ss_pred chHhHHHHHHhcCCC-HHHHHHHHhcCCC---------CC---cchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC
Confidence 345556667778888 7777777665321 11 2345666667777777777777776654421 000
Q ss_pred chh------------------------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH
Q 007930 152 DRA------------------------------LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAE 201 (584)
Q Consensus 152 ~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (584)
+.. .....++..+...|.+.|++++|...|++... | ...
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~ 355 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAV 355 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-Cee
Confidence 000 00112355555566666666666666554311 1 123
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH-------------------------------HHHHHHHHHH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE-------------------------------EAADRRLMAL 250 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~a~~~~~l~~ 250 (584)
+|..+...|.+.|++++|+++|++..+..- .++... ...++..+..
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNV---SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 455666666666666666666665533210 000000 0122334444
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH------
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA------ 324 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------ 324 (584)
.|.+.|++++|.+.|++.. .+ ....|..+...|...|++++|+..|++.... . .|+..
T Consensus 433 ~y~k~g~~~~A~~vf~~m~--------~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL 496 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP--------EK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----L---KPNSVTLIAAL 496 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC--------CC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----C---CCCHhHHHHHH
Confidence 4555555555555554321 01 1224455555555556666666555554321 0 11111
Q ss_pred ----------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 325 ----------------------------SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 325 ----------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
.....+...|.+.|+.++|...|+.. .. ...+|+.+...
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~ 563 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTG 563 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHH
Confidence 11122334555555555555555443 00 13567777778
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
|...|+.++|++.|++..+. +..+. ..++..+-..+.+.|+.++|..+|+...+... ..| ....|..+
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-----i~P-~~~~y~~l 631 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVES-----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-----ITP-NLKHYACV 631 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHc-----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-----CCC-chHHHHHH
Confidence 88888888888888776542 11111 12344555667778888888888877663211 112 13567778
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
..++.+.|++++|.+.+++.- + .|+ ..+|..|-..+...|+.+.|....++.+++ .|+....
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~-~--------~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~ 693 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP-I--------TPD-PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGY 693 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC-C--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcch
Confidence 888888888888887776641 1 444 356666666777788888888777777776 7888888
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 537 KERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+..|+.+|...|+|++|. +..+.+.
T Consensus 694 y~ll~n~ya~~g~~~~a~-~vr~~M~ 718 (857)
T PLN03077 694 YILLCNLYADAGKWDEVA-RVRKTMR 718 (857)
T ss_pred HHHHHHHHHHCCChHHHH-HHHHHHH
Confidence 999999999999999998 5555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=150.93 Aligned_cols=294 Identities=15% Similarity=0.145 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA--SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
|....+++. .+++...+...|...+...+++........ ....-+.-..+|.+|..+|-+.+|.+.++.++.
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~---- 251 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT---- 251 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh----
Confidence 444444443 245566677777777766666544332211 111223345799999999999999999998876
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
.....+.+..++.+|....+...|+..+.+.++. .|.....+..++.++..++++++|.++|+.+++..
T Consensus 252 ---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 252 ---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred ---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3455677888999999999999999999999987 68889999999999999999999999999999875
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
.. ..++...+|.-|+..++++-|+.+|++.+++-... ...+.++|.+++..++++-++..|+++
T Consensus 321 ~~---------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 321 PI---------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred Cc---------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 32 35666677888999999999999999999986554 567889999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+..... +...+.+|+++|.+....|++.-|..+|+-++.- +++..+++.+||.+-.+.|+.++|..+
T Consensus 385 lstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 385 LSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 987553 3346789999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+..+-.+ .|+..+..++++.+-
T Consensus 452 l~~A~s~--------~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 452 LNAAKSV--------MPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHhhhh--------CccccccccceeEEe
Confidence 9999988 788777777776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-17 Score=154.17 Aligned_cols=398 Identities=19% Similarity=0.178 Sum_probs=289.5
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
...+.++..+..+...|. -..|+...+..+..-+ ..++....+..-..|+.+.+.+++++.+..+++......
T Consensus 355 ~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~ 427 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ 427 (799)
T ss_pred hhHHHHHHHHHHHHHhcc-chHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh
Confidence 345566777777777777 5677776666665421 112223334444556667899999999999999976332
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMG-----------LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFD 217 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 217 (584)
.+.-.+ .++..+|.+|..+- ...+++..++++++. +|....+.+.++.-|..+++.+
T Consensus 428 ~~~l~~----~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 428 RSHLKP----RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred hhhhhh----hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHHHhHH
Confidence 222222 45777777776542 245666677777666 5666688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 007930 218 EAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297 (584)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 297 (584)
.|..+.++++++.+... +.+|..++.++...+++.+|+...+.++.... ++ .........+-...++
T Consensus 496 sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N---~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 496 SALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DN---HVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hh---hhhchhhhhhhhhccc
Confidence 99999999999854433 45799999999999999999999998876432 21 1122223334445899
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC---------------CCC
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDH-LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA---------------PAT 361 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~ 361 (584)
.++|+..+...+.+++...+... .........-+.+....++..+|+....++........ +++
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 99999999999999875432110 01122222233344444566666666666655433110 111
Q ss_pred C--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 362 A--PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 362 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
+ +......|...+..+...++.++|..++.++-.+.+.. +.+|+..|.++...|++.+|.+.|..++.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 1 22334567778899999999999999999998887655 788999999999999999999999999985
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATE--LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
+|....+...+|.++...|+..-|.. ++..++++ +|...++|+.+|.++...|+.++|.++|..
T Consensus 714 ------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 714 ------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred ------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34445788899999999999888888 99999999 899999999999999999999999999999
Q ss_pred HHHH
Q 007930 518 ILKV 521 (584)
Q Consensus 518 a~~~ 521 (584)
|+++
T Consensus 780 a~qL 783 (799)
T KOG4162|consen 780 ALQL 783 (799)
T ss_pred HHhh
Confidence 9997
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-17 Score=140.50 Aligned_cols=424 Identities=14% Similarity=0.055 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-----------CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG-----------SGQELELVMSLHMLAAIYCSLGRFEEAVPVLE 139 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 139 (584)
...+..+....+.... |..|...|..++..-..... ....+...+.-...+.+|...++-+.|+....
T Consensus 43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~ 121 (564)
T KOG1174|consen 43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL 121 (564)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence 3344444444444445 66666666666654322111 12233445666788999999999999988776
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH--------------------------hC
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA--------------------------LG 193 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~ 193 (584)
...... ..| .....++..+..-++..++.-.|...+..+.-. ..
T Consensus 122 ~~p~t~------r~p----~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 122 QVPPTL------RSP----RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cCCccc------cch----hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence 643221 122 224445555555555545544444433221100 00
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAE--NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
+..+.. .....+......++...|. .++-+-....+.+ ...+..+|.+++..|++++|+..|+++..+
T Consensus 192 ~~~dwl--s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 192 DHFDWL--SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred CCccHH--HHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 111111 1222233333344443333 3333333333222 345778999999999999999999987653
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL 351 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 351 (584)
++......-..|.++...|++++-.......+.+ ......-|+--+...+..+++..|+.+-++++
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 6777777778888888899988877776666665 23344455666777788889999999999998
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHH
Q 007930 352 RVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSF 431 (584)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (584)
....+ ...++...|.++...|+.++|+-.|+.|..+.|.. ..+|..+-.+|...|++.+|....
T Consensus 328 ~~~~r---------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 328 DSEPR---------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred ccCcc---------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 87544 25678888999999999999999999988877655 577888889999999999999888
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHH-HHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMG-LACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
+.++..+.. .+.++..+| .++. .-.--++|.+++++++.+ .|....+...+|.++...|+++
T Consensus 392 n~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 392 NWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccc
Confidence 888886543 345566664 3333 234457889999999988 8888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+++.++++++.. .|+ ...+..||.++...+.+.+|. ..+.+++..+|++...
T Consensus 456 D~i~LLe~~L~~--------~~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 456 DIIKLLEKHLII--------FPD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKSKRT 507 (564)
T ss_pred hHHHHHHHHHhh--------ccc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccchHH
Confidence 999999999886 344 366788999999999999998 8888888887766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-17 Score=139.65 Aligned_cols=402 Identities=13% Similarity=0.034 Sum_probs=289.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
....|.....-...+.++...++ -+.|+....+...- .. ....-..++..+-.-++..++.--|...+.
T Consensus 90 S~~~~~~~e~~r~~aecy~~~~n-~~~Ai~~l~~~p~t-------~r---~p~inlMla~l~~~g~r~~~~vl~ykevvr 158 (564)
T KOG1174|consen 90 SYPEFGDAEQRRRAAECYRQIGN-TDMAIETLLQVPPT-------LR---SPRINLMLARLQHHGSRHKEAVLAYKEVIR 158 (564)
T ss_pred cCCCcccHHHHHHHHHHHHHHcc-chHHHHHHhcCCcc-------cc---chhHHHHHHHHHhccccccHHHHhhhHHHH
Confidence 33455666777778888888887 56666655443321 11 122233455555555554444444443333
Q ss_pred HHHh--------------------------ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 144 VVDI--------------------------GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 144 ~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
.++- ...+..+. ......+.+....++...|...+--+-.. ..-+
T Consensus 159 ecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dw---ls~wika~Aq~~~~~hs~a~~t~l~le~~------~~lr 229 (564)
T KOG1174|consen 159 ECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDW---LSKWIKALAQMFNFKHSDASQTFLMLHDN------TTLR 229 (564)
T ss_pred hcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccH---HHHHHHHHHHHHhcccchhhhHHHHHHhh------ccCC
Confidence 2210 00011111 11223344444555555555443222111 1146
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.....+..+|.+++..|++++|+..|+++.-+.+... ......|.++...|++++-.........+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------ 295 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAK------ 295 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhh------
Confidence 6788899999999999999999999999988766543 33667788888899988876666554432
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
....+.-++.-+...+...++..|+.+-+++++. ++....++...|.++...|+.++|+-.|+.+..+.
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 2223334455677788899999999999999998 78888899999999999999999999999999886
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH-HHHH-HhccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG-VMLY-VVGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~a~ 435 (584)
|....+|..|-.+|...|++.+|....+.++...+.. +.++..+| .++. .-.--++|.+++++++
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 4457899999999999999999999999999998877 55555554 3333 3334588999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
.+ .|.+..+-..++.++...|.++.++.++++.+.. .++. ..+..||.++...+.+++|..+|
T Consensus 432 ~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 432 KI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDV-NLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred cc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------cccc-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 85 5566778889999999999999999999999997 4554 67889999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 516 EYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 516 ~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
..|+.+ +|.+..++..+-.+-....
T Consensus 495 ~~ALr~--------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 495 YKALRQ--------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhc--------CccchHHHHHHHHHHhccC
Confidence 999998 8999988888877655444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=141.19 Aligned_cols=325 Identities=16% Similarity=0.102 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.-.+.+|..+...|++.+|+..|..+++. +|....+++..|.+|...|+-.-|+.-+.+++++.|...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~---- 106 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM---- 106 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----
Confidence 44788999999999999999999999998 899999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.+....|.++..+|++++|..-|.+.+.. ........ +|..-+..+
T Consensus 107 ----~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~-----------------eaqskl~~~---------- 152 (504)
T KOG0624|consen 107 ----AARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVL-----------------EAQSKLALI---------- 152 (504)
T ss_pred ----HHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhH-----------------HHHHHHHhH----------
Confidence 34778899999999999999999987652 11111111 111111111
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.....+......+...|++..|+++....+++. +..+..+...+.+|...|+...|+.-++.+-++..
T Consensus 153 ---~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 153 ---QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred ---HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 111223334455667899999999999999985 55678888999999999999999999999988876
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH---------HHHHHhhCCHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM---------GLACLQLYRINEA 469 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~g~~~~A 469 (584)
++ ...++.++.+++..|+.+.++...++++++-.. +...-..|..+ +.-....++|.++
T Consensus 221 Dn-------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-----HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 221 DN-------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-----HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred cc-------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 65 567778999999999999999999998885221 11111112111 2333455777777
Q ss_pred HHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 470 TELFEEARGVLEQECGSCHLD----TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++..++.++. .|. ...+...+..|+..-|++.+|+....+++++ +|+++.++..-+.+|.
T Consensus 289 le~ge~vlk~--------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 289 LEAGEKVLKN--------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhc--------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHh
Confidence 7777777765 444 3345667788999999999999999999998 8999999999999999
Q ss_pred HhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 546 ETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.-..|++|+ ..++.+.+.+++...
T Consensus 353 ~dE~YD~AI-~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 353 GDEMYDDAI-HDYEKALELNESNTR 376 (504)
T ss_pred hhHHHHHHH-HHHHHHHhcCcccHH
Confidence 999999999 899999887766543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=174.18 Aligned_cols=403 Identities=15% Similarity=0.107 Sum_probs=255.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR 153 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 153 (584)
+..+-..+...++ +..+.+.+...++. + ..+ ....+..+-..|.+.|++++|...|++... + +
T Consensus 190 ~~~ll~~~~~~~~-~~~~~~~~~~~~~~------g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~-d 252 (857)
T PLN03077 190 FPCVLRTCGGIPD-LARGREVHAHVVRF------G-FEL-DVDVVNALITMYVKCGDVVSARLVFDRMPR-------R-D 252 (857)
T ss_pred HHHHHHHhCCccc-hhhHHHHHHHHHHc------C-CCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------C-C
Confidence 3334445556777 88888888887753 1 111 234566788899999999999999988531 1 1
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----------------------------HhCCCChHHHHHHHH
Q 007930 154 ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE----------------------------ALGDSDPRVAETCRY 205 (584)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~~~ 205 (584)
. .+|..+...|.+.|++++|+..|.+....... ...........++..
T Consensus 253 ~----~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 253 C----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred c----chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 1 34888888999999999999999987653100 000000112334555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID 285 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 285 (584)
+...|.+.|++++|.+.|++... . + ..+|..+...|.+.|++++|++.|++... .+..|+. .++
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~-----~--d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~----~g~~Pd~-~t~ 392 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET-----K--D----AVSWTAMISGYEKNGLPDKALETYALMEQ----DNVSPDE-ITI 392 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----C--C----eeeHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCCCc-eeH
Confidence 56666666666666666665421 0 0 12366666666677777777766665322 2222222 123
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE 365 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 365 (584)
..+-..+...|++++|.+.+..+.+. .......++..+...|.+.|++++|.+.|++..+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------ 453 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------ 453 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------
Confidence 33334555666666666666655443 12334556777788888888888888888764211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH-------------------------------HHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI-------------------------------AGIEAQM 414 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~l 414 (584)
...+|+.+...|...|+.++|+..|++.... ...+.... ..++..+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 1346777888888888888888888887531 11111100 0112344
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
...|.+.|+.++|...|+.. . . ...+|+.+...|...|+.++|+++|++..+. ...|+. .+
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-~--------~---d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T 591 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-E--------K---DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VT 591 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-C--------C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-cc
Confidence 56777888888887777653 1 1 2467888889999999999999999987753 123443 45
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
+..+-..+.+.|+.++|..+|+...+.. | ..|+ ...+..+..++.+.|++++|. ..++.+
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m 651 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKY----S-ITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM 651 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHh----C-CCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence 6666677888999999999998877431 1 1343 367888888999999999998 555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-16 Score=141.19 Aligned_cols=416 Identities=16% Similarity=0.097 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++..+.-.+..++ |.+.+...+..+.- .|+..+.+...|..+..+|+-++|..+...++....
T Consensus 8 ~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k---------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~----- 72 (700)
T KOG1156|consen 8 NALFRRALKCYETKQ-YKKGLKLIKQILKK---------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL----- 72 (700)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHh---------CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----
Confidence 457777888889998 99999998888873 445667777899999999999999999999887432
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (584)
.+. .+|+.+|.++....+|++|+.+|+.|+.+ .++...++..++.+..+.++++.....-.+.++..+
T Consensus 73 ~S~----vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 73 KSH----VCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred ccc----hhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 222 46899999999999999999999999999 788899999999999999999999888888888776
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ--ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 232 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
... ..|...+..+...|++..|....+..........+ ......+......+....|.+++|.+.+..--
T Consensus 141 ~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 141 SQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 654 34888888899999999999888776554431111 22333444455556666677666666554422
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh---------
Q 007930 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL--------- 380 (584)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------- 380 (584)
.- ..+........+.++..++++++|...+...+...+.. ...+..+-.++..-
T Consensus 213 ~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn---------~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 213 KQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN---------LDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred hH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh---------HHHHHHHHHHHHHHhhhHHHHHH
Confidence 21 12333444556677777777777777777666553221 11111111111000
Q ss_pred -------------------------------------------------------cCHHHHHHHHHHHHHHHHhCC----
Q 007930 381 -------------------------------------------------------NEHEEALKLLQKAMKLLEDTP---- 401 (584)
Q Consensus 381 -------------------------------------------------------g~~~~A~~~~~~a~~~~~~~~---- 401 (584)
.+..+ ...+++.+.......
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhccccc
Confidence 00000 012222222111111
Q ss_pred ----------CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH
Q 007930 402 ----------GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATE 471 (584)
Q Consensus 402 ----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (584)
..+....++++.++..+...|+++.|..+++.|+. +.|.....+...|+++...|++++|..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 12345677888899999999999999999999998 678888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHhchH
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
++.++.++ +....-+-..-|.-..+.++.++|.+...+--.-.....+ -......+....-|..|.++|++
T Consensus 427 ~l~ea~el--------D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~ 498 (700)
T KOG1156|consen 427 WLDEAQEL--------DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKL 498 (700)
T ss_pred HHHHHHhc--------cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHH
Confidence 99999988 2222223335777788889999998766544332110001 01122233334458899999999
Q ss_pred HHHHHH
Q 007930 551 RNRKGK 556 (584)
Q Consensus 551 ~~A~~~ 556 (584)
..|..+
T Consensus 499 g~ALKk 504 (700)
T KOG1156|consen 499 GLALKK 504 (700)
T ss_pred HHHHHH
Confidence 888743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=161.81 Aligned_cols=420 Identities=15% Similarity=0.033 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....+...+..+...|++.+|+.++..+- +. ..........+......|++.....++...-.. . .
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~---------d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~---~ 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAG---------DA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWE-V---L 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCC---------CH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-H---H
Confidence 34555666777778888888877665531 11 122244666777788889888776666543111 0 0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS-ASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
..+|. .....+.++...|++++|...+.++.......... .....+.+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11232 34567778889999999999999987765432211 112244556678899999999999999999987642
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
. ..+......+...+|.++...|++++|...+++++........ ......++..+|.++...|++++|..++++++.
T Consensus 483 ~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 P-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred C-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122224456788999999999999999999999998776541 233456778999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007930 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432 (584)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (584)
+..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..+|.++...|++++|...+.
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 887642 11223334456778999999999999999999999987654 2 22345667789999999999999999999
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 433 SAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
++..+....+.. ..............+...|+.+.|..++....... .+ ........+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876553211 11011111112344556789999988876644310 00 01112233568899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 513 EILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
..+++++...+.. +. ......++..+|.++..+|+.++|. ..+..+++.
T Consensus 712 ~~l~~al~~~~~~-g~-~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~l 760 (903)
T PRK04841 712 IILEELNENARSL-RL-MSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 9999999985443 32 3567788999999999999999998 777776644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=162.83 Aligned_cols=265 Identities=22% Similarity=0.235 Sum_probs=114.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIH-REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
..+|.++...|++++|++++.+.+... +... ...+..+|.+....++++.|+..|++.+.. ++...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-------~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~ 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDD-------PEYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccc------ccccc
Confidence 367999999999999999997766544 2211 134778999999999999999999987653 33344
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+..++.+ ...+++++|+.+++++.+. ......+..+..++...++++++...++++.....
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~------- 141 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYER---------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA------- 141 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred ccccccccc-ccccccccccccccccccc---------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-------
Confidence 455666777 7899999999999887664 12334556677788999999999999999775321
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.+.....+..+|.++...|++++|+..++++++..|+. ..+...++.++...|+++++.+.+........
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--- 211 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-------PDARNALAWLLIDMGDYDEAREALKRLLKAAP--- 211 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H---
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc---
Confidence 23446788999999999999999999999999998876 56777899999999999998888877766532
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+ ...+..+|.++...|++++|+.+|++++.. +|..+.++..+|.++...|+.++|..++++++..
T Consensus 212 --~~---~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 212 --DD---PDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --TS---CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT------------------
T ss_pred --CH---HHHHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccccccc
Confidence 12 245678899999999999999999999998 8999999999999999999999999999998875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-15 Score=137.37 Aligned_cols=344 Identities=15% Similarity=0.073 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..+..-+..+...+.++-|...|..+++. .|..-..|...+..-...|..++-..++++++...|+...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--- 585 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--- 585 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh---
Confidence 34677778888888888888888888888 5666677777887778888899999999999988876542
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.|...+..+...|+...|...+.++.+. .+..-.++..-..+.....+++.|..+|.++...
T Consensus 586 -----lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~------- 647 (913)
T KOG0495|consen 586 -----LWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI------- 647 (913)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------
Confidence 3667778888889999999999888764 4555666777777888889999999999988764
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.....++..-+.+...+++.++|+.+++++++.+ |.....|..+|+++..+++.+.|.+.|...++.+|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 4556778888888899999999999999999987 44568899999999999999999999999888877
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.. .-.+..++.+-.+.|+.-.|...++++.- .+|.....|.....+-.+.|+.+.|.....+|++
T Consensus 717 ~~-------ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 717 NS-------IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CC-------chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 44667888999999999999999998876 3455567777777888889999999999999887
Q ss_pred HHHHHh--------CC--------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 479 VLEQEC--------GS--------------CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 479 ~~~~~~--------~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
-+.... -. .....+.++..+|.++....++++|.++|.+++.+ +|++-++
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~ 853 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDA 853 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchH
Confidence 643211 00 01123457888999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+..+-..+...|.-++-+ ..+.......|
T Consensus 854 wa~fykfel~hG~eed~k-ev~~~c~~~EP 882 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQK-EVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHhccCC
Confidence 999999999999777776 55555554444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=161.80 Aligned_cols=264 Identities=25% Similarity=0.239 Sum_probs=114.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
..+|.++...|++++|++.+.+.+... .++.....+..+|.+....+++++|+..|++.+.. .+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence 366999999999999999997654321 13455577788999999999999999999999876 445566
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
.+..++.+ ...+++++|+.+++++.+.... ...+.....++...++++++...++++..... ..
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGD----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP 143 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred cccccccc-cccccccccccccccccccccc----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 67777777 7899999999999887765322 34455677788999999999999998774221 12
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....++..+|.++.+.|+.++|+.+|+++++. .|....+...++.++...|+++++.+.++.....
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------ 209 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA------ 209 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence 23567888999999999999999999999996 4445678889999999999999988888887776
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.|.....+..+|.++..+|++++|+.+|++++.. +|+++..+..+|.++...|+.++|. ...+.++
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~ 275 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQAL 275 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-----------------
T ss_pred --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccc
Confidence 2333346788999999999999999999999998 8999999999999999999999998 4444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-16 Score=132.68 Aligned_cols=344 Identities=15% Similarity=0.103 Sum_probs=278.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 119 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
..-|.-++...++++|+..+.+.+....+ ....+..+-.+..+...+|.|++++.+--..++.+... ++...
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~ 81 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDF 81 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHH------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34567778888999999999988876532 23344567788889999999999998877777776654 33445
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
..+++.+++..+....++.+++.+.+-.+.+-..... ..-......+|..+..++.++++++.|+.|+++....++.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 6789999999999999999999988877765322221 1112446679999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.....++..+|.++....|+++|.-+..++.++.....-.+ ......+++.++..+..+|....|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999987765232 2345667889999999999999999999999999876
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHH-----HHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE-----ARSSF 431 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~ 431 (584)
..+.+..+..+..+|.+|...|+.+.|..-|++|....... ++......++...+.++....-..+ |++.-
T Consensus 239 ---~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 239 ---HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred ---hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 44567778899999999999999999999999999988776 6666667777777887776655555 99999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
++++++...+|.+. .+......++.+|..+|.-++=...+..+-+.
T Consensus 315 ~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 315 TRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999888654 34678889999999998888777777666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-16 Score=131.98 Aligned_cols=346 Identities=15% Similarity=0.107 Sum_probs=276.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
.+.-|.-++...++++|+..+.+.+...... ......+..+..+...+|.|++++.+--..+....+.. +...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4456677788899999999999998875443 34556777788899999999999988777777776665 3445
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
...++.+++..+....++.+++.+-.-.+..-. ......-..+...+|..+..++.++++++.|++++.+..... |.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--Cc
Confidence 566789999999999999999888775543211 101122335667799999999999999999999999987654 34
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP-ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.....++..||.++....++++|.-+..++.++...... +.+......+++.++..+..+|..-.|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999877532 2233345677889999999999999999999999999888
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH-----HHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE-----ATELFE 474 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~ 474 (584)
. |+....+.....+|++|...|+.+.|..-|+++......+++.... ..++...+.++....-..+ |++.-+
T Consensus 239 ~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--v~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 239 H-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--VEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred h-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 7 8888888889999999999999999999999999999888876433 5677778888776655555 999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+++++..+++. .......+..++.+|...|.-++=...+.++-+.
T Consensus 316 r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 316 RLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999888866 4466788999999999999988877777776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=131.86 Aligned_cols=213 Identities=20% Similarity=0.152 Sum_probs=185.4
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......+...||.-|...|++..|...++++++..+ ....++..++.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP---------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP---------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 345567888999999999999999999999999863 45789999999999999999999999999999888
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++++.|..++.+|++++|...|++|+.. +..+..+.++.++|.|..+.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7 678999999999999999999999999872 233445789999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
+|+.......++......|++..|..++++.... -+-.++.+....++-...|+.+.+. .+-.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 8888899999999999999999999999987775 4466788888888999999998887 6666
Q ss_pred HHHhhhhhhhHH
Q 007930 560 NLLDSNAYRVKK 571 (584)
Q Consensus 560 ~~~~~~~~~~~~ 571 (584)
.+...-|.+...
T Consensus 232 qL~r~fP~s~e~ 243 (250)
T COG3063 232 QLQRLFPYSEEY 243 (250)
T ss_pred HHHHhCCCcHHH
Confidence 666666655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-16 Score=129.73 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=226.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--cchHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ--ENEVAA 283 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~ 283 (584)
-|.-+.-..+.++|+..|..+++..+... .+...+|.+|...|+.+.|+..-+..+. .++ ......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHH
Confidence 45566677899999999999988555443 4589999999999999999988764332 222 224466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
++..+|.-|+..|-++.|+..|....+. ......++..|..+|....++++|++..++..++..+ ...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~ 176 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYR 176 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cch
Confidence 7889999999999999999999987764 3455678889999999999999999999998887643 345
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..++..++.++..+....+.+.|...+.+|++..++. ..+-..+|.++...|+|++|++.++.+++-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------ 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------ 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence 6789999999999999999999999999999987776 445558999999999999999999999885
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
++...+.+...|..+|...|+.++....+.++.+. .+.. .+...++..-....-.+.|..++.+-+..
T Consensus 244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTGA-DAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 56678899999999999999999999999999986 3332 45566777777777778888888877776
Q ss_pred HHhCCCChhHHHHH
Q 007930 524 EKLGTANPDIDDEK 537 (584)
Q Consensus 524 ~~~~~~~p~~~~~~ 537 (584)
+|...-.+
T Consensus 312 ------~Pt~~gf~ 319 (389)
T COG2956 312 ------KPTMRGFH 319 (389)
T ss_pred ------CCcHHHHH
Confidence 78764444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=156.60 Aligned_cols=252 Identities=14% Similarity=0.011 Sum_probs=201.4
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL---------CRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
+++++|+..|++++.. +|....++..+|.++... +++++|+..+++++++ .|....+
T Consensus 275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 5678999999999874 777788888999887644 3478999999999998 7888999
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
+..+|.++...|++++|+..|++++++.. ....++..+|.++...|++++|+..+++++++.+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSP---------ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 99999999999999999999999999853 3467889999999999999999999999999876642
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.....++.+++..|++++|+..+++++.. .++.....+..+|.++...|++++|...+.+....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 23334566677899999999999998864 23344567889999999999999999999887665
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
.|........++..|...|+ +|...+++.++..... +.+ ...+..++.-.|+.+.+. .. +.+.+.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~-~~-~~~~~~ 535 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEK-MW-NKFKNE 535 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHH-HH-HHhhcc
Confidence 67777788889999998884 8888888876654321 112 223788888888888887 33 555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-16 Score=147.75 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
......-|.+....|+++.|.+.+.++.+..+.. ...+...|.++..+|+++.|..++.++.+. .++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~ 152 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDN 152 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCc
Confidence 3444566788889999999999998876653321 233667899999999999999999987642 11211
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+..+...
T Consensus 153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---- 218 (409)
T TIGR00540 153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---- 218 (409)
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence 223445699999999999999999999887 688889999999999999999999999998887631
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.+.............-+...+..+++.+.+.++....+.. ......++..++..+...|++++|...++++++...
T Consensus 219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 1222222222222222234455555556666666554422 112256677899999999999999999999998522
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL--GVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. +.... ............++.+.+++.++++++. +|+.+ ..+..+|.++.+.|++++|.++|++
T Consensus 295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 11000 0122223334458889999999999988 77777 8889999999999999999999994
Q ss_pred --HHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 518 --ILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 518 --a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+++. +|+... +..+|.++.++|+.++|. ..++..+
T Consensus 361 a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l 397 (409)
T TIGR00540 361 VAACKE--------QLDAND-LAMAADAFDQAGDKAEAA-AMRQDSL 397 (409)
T ss_pred hHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 6555 676655 559999999999999998 6665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-16 Score=147.99 Aligned_cols=310 Identities=10% Similarity=-0.050 Sum_probs=227.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
....|......|+++.|.+.+.++.+. .|.....+...|.+....|+++.|..++.++.+..+...-
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l----- 153 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI----- 153 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch-----
Confidence 456678888999999999999887776 4555566677899999999999999999999865543321
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+....+.++...|+++.|...+++..+. .|....++..++.++...|++++|.+.+.+..+.. . ..
T Consensus 154 --~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~----~-~~ 220 (409)
T TIGR00540 154 --LVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG----L-FD 220 (409)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----C-CC
Confidence 12344589999999999999999987663 56666788999999999999999999998877651 0 11
Q ss_pred ccHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVA-SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+... ........-....+..+++.+.+.++...... ..+.....+..++..+...|++++|.+.++++++..++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 2211 22222222223444555555566666654321 12234678888999999999999999999999998765
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH--HHHHHHHHHHHhhCCHHHHHHHHHH--
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG--IVLNQMGLACLQLYRINEATELFEE-- 475 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-- 475 (584)
..... ............++.+++++.++++++. .|... ..+..+|.++...|++++|.++|++
T Consensus 296 ~~~~~-----~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 296 DRAIS-----LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred cccch-----hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 52110 0012233334457888888888888873 33445 7788999999999999999999994
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
+++. +|+... +..+|.++.+.|+.++|.++|++++...-
T Consensus 363 a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 363 ACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred Hhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 6655 666644 66999999999999999999999988643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-16 Score=128.47 Aligned_cols=276 Identities=16% Similarity=0.194 Sum_probs=221.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 154 (584)
+-.|.-+.-..+ +++|++.|.+.++. ++...++...||..|.+.|+.+.|+...+..+... .-..
T Consensus 39 Yv~GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~ 103 (389)
T COG2956 39 YVKGLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTF 103 (389)
T ss_pred HHhHHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCch
Confidence 444555666666 89999999998873 66788999999999999999999999988765431 1111
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
.....++..+|.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++..++.+..
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~- 174 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT- 174 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-
Confidence 222356889999999999999999999888765 33455688899999999999999999998887765443
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
....++..|..++..+....+.+.|...+.+|+.. ++....+-..+|.+....|+|..|++.++.+++-
T Consensus 175 --~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--- 243 (389)
T COG2956 175 --YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--- 243 (389)
T ss_pred --chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence 56788899999999999999999999999999884 7777788889999999999999999999998886
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
++.....+...|..+|..+|+.++.+.++.++.+.... ......++.+-....-.+.|..++.+-+
T Consensus 244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 45567788899999999999999999999999887643 2344455666666666777877777666
Q ss_pred HHHHh
Q 007930 395 KLLED 399 (584)
Q Consensus 395 ~~~~~ 399 (584)
...|+
T Consensus 310 ~r~Pt 314 (389)
T COG2956 310 RRKPT 314 (389)
T ss_pred hhCCc
Confidence 55443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-15 Score=137.47 Aligned_cols=372 Identities=17% Similarity=0.062 Sum_probs=254.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
+....+.-..++.-+..+...+. ++-|+..|..+++.+.. .-..+...+..--.-|..++-..++++++.
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp~---------k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFPC---------KKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44455556666777777777777 77777777777776432 222333444444556677777777777776
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
.+++ .+ ..++..+..+...|+...|...+.++++. +|..-+++..--.+.....+++.|..+|
T Consensus 579 ~~pk-----ae----~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 579 QCPK-----AE----ILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred hCCc-----ch----hHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 6532 21 12556666777778888887777777776 5666666666666777777788887777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHH
Q 007930 224 KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF 303 (584)
Q Consensus 224 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 303 (584)
.++....+ ...+|+.-+.+...+++.++|+.+++++++. .|.....+..+|.++..+++.+.|..
T Consensus 642 akar~~sg---------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 642 AKARSISG---------TERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHhccCC---------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 77765322 1245667777777777888888887777764 56677777778888888888888887
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
.|...+.. .|.....+..++.+-...|+...|...++++.-.. |.....|......-.+.|+.
T Consensus 707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---------Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---------PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---------CCcchhHHHHHHHHHHcCCH
Confidence 77777766 56677777777777777777777777777765442 22345666666667777888
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh
Q 007930 384 EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463 (584)
Q Consensus 384 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (584)
+.|.....+|++-++.. | ..+..-..+.-.-++-.+++..++++- + ...++..+|.++...
T Consensus 770 ~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkce---------~---dphVllaia~lfw~e 830 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKCE---------H---DPHVLLAIAKLFWSE 830 (913)
T ss_pred HHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhcc---------C---CchhHHHHHHHHHHH
Confidence 88888888887777665 1 111111111112223223333222221 1 236788899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 464 YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 464 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++++|.+.|.++++. .|+..+++..+-..+...|.-++-.+.+.++...
T Consensus 831 ~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 9999999999999999 8899999999999999999999999898888775
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-13 Score=125.86 Aligned_cols=435 Identities=13% Similarity=0.110 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++..-..+...|+ |++|+....+.+.. .|+...++..--.+..+.++|++|+...+.-....
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~---------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~------ 76 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSI---------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL------ 76 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhc---------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh------
Confidence 566666677778888 99999988888875 23345566677778889999999996555422111
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (584)
... ...+.-+.|.++++..++|+..++-+ ++....++...|.+++++|+|++|...|+...+...
T Consensus 77 --~~~--~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 77 --VIN--SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred --hcc--hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 000 11368899999999999999888721 233345677789999999999999999998876433
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007930 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE-NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLT 310 (584)
Q Consensus 232 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (584)
...+. -...+.++..-...++ ........ ......+++.+.++...|+|.+|++.+++++.
T Consensus 142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22211 0111111111111111 11222222 33667889999999999999999999999999
Q ss_pred HHHHhhcCCc-------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 311 VFKATRGEDH-------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 311 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
++++....++ .....+...++.++..+|+..+|...|...+.... .+.+..+.+-++|-.+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----ADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----CCchHHHHHhcchhhhccccccC
Confidence 9877654332 23456778899999999999999999999887642 23334444444443221111111
Q ss_pred H---------------------------HHHH-----------HHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHhccH
Q 007930 384 E---------------------------EALK-----------LLQKAMKLLEDTPGYHST-IAGIEAQMGVMLYVVGRY 424 (584)
Q Consensus 384 ~---------------------------~A~~-----------~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 424 (584)
+ +++. -..++.++....++..+. ...++. ..........+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHH
Confidence 1 0000 001112222222222211 112211 11122222244
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 504 (584)
.+|.+++....+ .++.....+...++.+...+|+++.|++.+...+......... -...+.+-..+-..+.+
T Consensus 358 ~ka~e~L~~~~~-------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 358 KKAIELLLQFAD-------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVGAIVALYYK 429 (652)
T ss_pred hhhHHHHHHHhc-------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHHHHHHHHHh
Confidence 555555444433 2333346678888999999999999999999666443333221 12223344556667888
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++.+.|...+.+|+..++..... .+.....+..++.+-.+.|+-++|. ..++.++..+|+....
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPNDTDL 494 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCchHHH
Confidence 888888999999999988776554 3666677788889989999999999 9999999877776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=156.29 Aligned_cols=249 Identities=11% Similarity=-0.017 Sum_probs=196.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhc---------CChhhHHHHHHHHHHHHHhccCCchhhhHH
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSL---------GRFEEAVPVLERSIEVVDIGKGSDRALAKF 158 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (584)
+++|+.++++|+++ +|..+.++..+|.+|... +++++|+..+++++++. ++++
T Consensus 277 ~~~A~~~~~~Al~l---------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----P~~~---- 338 (553)
T PRK12370 277 LQQALKLLTQCVNM---------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----HNNP---- 338 (553)
T ss_pred HHHHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----CCCH----
Confidence 56888888888875 455677888888887644 34889999999999875 4444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+|.++...|++++|+..|++++++ +|....+++.+|.++...|++++|+..+++++++.|....
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--- 407 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--- 407 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---
Confidence 34788999999999999999999999999 7888899999999999999999999999999998775431
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.+..++.++...|++++|+..+++++.. ..+.....+..+|.++...|++++|...+.+....
T Consensus 408 -----~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 408 -----AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred -----hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 2344566677789999999999987653 23555667889999999999999999999886554
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.+........++..|...|+ +|...+++.++..... . .....+..++.-.|+.+.+..+ +++.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~---~------~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI---D------NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh---h------cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 56777788888999888884 8888888877665431 1 1122377788888888877766 55443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=140.14 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=174.5
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+++++++++..+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455678899999999999999999999999987742 23578889999999999999999999999987554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ...+..+|.++...|++++|+..+++++.... .+.....+..+|.++...|++++|..++.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 45777899999999999999999999987311 1223567888999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
.|....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|. ...+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 6677788999999999999999999999999987 4556677778999999999999998 5555
Q ss_pred HHHh
Q 007930 560 NLLD 563 (584)
Q Consensus 560 ~~~~ 563 (584)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 5543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=138.67 Aligned_cols=289 Identities=15% Similarity=0.096 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.-....|..++...+|.+|+..|..|+++ .|+.+..|.+.+.+++..|+|++|....++.+++.+....
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--- 118 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--- 118 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc---
Confidence 44667888899999999999999999999 6777999999999999999999999999999887765543
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------------HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLAS------------MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
.+...+.++...++..+|.+.++..- .+.......|........-+.++...|++++|...--
T Consensus 119 -----~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 119 -----GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred -----cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 25567777777777777776665211 0000111123333333444555555555555555554
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
..+++ ++....++..-|.++...++.+.|+.+|++++.+.+. +.....++
T Consensus 194 ~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd------h~~sk~~~---------------- 243 (486)
T KOG0550|consen 194 DILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD------HQKSKSAS---------------- 243 (486)
T ss_pred HHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChh------hhhHHhHh----------------
Confidence 44444 4455555555555555555555555555555554322 11100000
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
..+.....+..-|.-.++.|++.+|.+.|..++.+-.. +....+.+|.+++.+....|+.
T Consensus 244 ----------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 244 ----------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred ----------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCc
Confidence 00111223334455666666666666666666664222 2333456666667677777777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+|+.-...++++ ++....++...|.|+..+++|++|.+.|+++++.
T Consensus 304 ~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777766 6666667777777777777777777777777665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=126.28 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
.....+...+|.-|+..|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++++.+..+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-- 101 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-- 101 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--
Confidence 345667788888888889998898888888887 7888888888888898899999999999988888643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
...++++.|..++.+|++++|...|++|+.. ........++.++|.|..+.|+++.|.++|+++++.
T Consensus 102 -------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 102 -------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred -------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 3678888888888889999998888888753 122233566778888889999999999999998885
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+........++..++..|++..|..+++..... .+..++.+....++-...|+-+.|..+-.+.
T Consensus 169 -------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 169 -------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred -------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344567778888888889999988888877665 3456677777777888888888887777666
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
...
T Consensus 234 ~r~ 236 (250)
T COG3063 234 QRL 236 (250)
T ss_pred HHh
Confidence 655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=143.42 Aligned_cols=247 Identities=16% Similarity=0.095 Sum_probs=178.7
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
+..+.++..+.+++... .-++...+..++.+|.++...|++++|+..|++++++ .|....+++.+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 45666777777655321 1234456788999999999999999999999999998 7888999999999999
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
..|++++|+..|++++++.. ....++.++|.++...|++++|++.++++++..++.. .... ..
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---~~ 172 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDP---------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRAL---WL 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---HH
Confidence 99999999999999999853 2367889999999999999999999999998866541 1111 12
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
.+....+++++|+..+.++.... .++. + ..+.+....|+..++ ..++.+.+..+... ...+...+++
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~------~~~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~ 239 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL------DKEQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY 239 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC------Cccc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence 23455788999999998766421 1111 1 134455556666544 23333332110000 0045567899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhchH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLGTAN-PDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 550 (584)
+.+|.++...|++++|+.+|++++++ + |+..+..+.+.++....++.
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~--------~~~~~~e~~~~~~e~~~~~~~~ 287 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALAN--------NVYNFVEHRYALLELALLGQDQ 287 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999997 4 46666666666665554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-16 Score=137.19 Aligned_cols=207 Identities=16% Similarity=0.117 Sum_probs=172.0
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+.......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.....
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34556788899999999999999999999999876 5777888999999999999999999999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
....+..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|...+++++.
T Consensus 98 ---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 98 ---------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245788899999999999999999999986421 122245667889999999999999999999988
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILE 516 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 516 (584)
. .+.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 I--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred h--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 2223567889999999999999999999999887 45556777888999999999999998887
Q ss_pred HHHHH
Q 007930 517 YILKV 521 (584)
Q Consensus 517 ~a~~~ 521 (584)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-15 Score=140.74 Aligned_cols=410 Identities=16% Similarity=0.126 Sum_probs=253.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc------------------
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK------------------ 149 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------ 149 (584)
...|...+-+++++ ++..+.++..||.+|...-+...|..+|++|.++.....
T Consensus 474 ~~~al~ali~alrl---------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 474 SALALHALIRALRL---------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred HHHHHHHHHHHHhc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 46666666666654 444566666666666666666666666666655531110
Q ss_pred ---------CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 007930 150 ---------GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220 (584)
Q Consensus 150 ---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (584)
...........+..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++..|+
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHH
Confidence 00011111234566888888999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHcCChh
Q 007930 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN-GQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
+.|.++..+.|... ...+..+.+....|+|.+|+..+...+...... .-....+.++..++..+...|-+.
T Consensus 617 KvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred HhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999998876554 347788899999999999999998776544322 224466778888888888889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH-----------------------------HHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL-----------------------------RESKSYCENA 350 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----------------------------~~A~~~~~~a 350 (584)
+|..+++++++.+.-............+..+|......-.. --+.+++-..
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 99999999988765543222122222233333222111110 0122222222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEA--------LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
+... .....|+++|..|.. +.+...|+.++.+++++..+. ...++.||.+ ...|
T Consensus 769 lsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 769 LSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGIG 830 (1238)
T ss_pred HHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hccc
Confidence 2222 124577888887766 233458999999999987765 2344444444 3345
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH----
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL---- 498 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 498 (584)
++.-|..+|-+++.. .|.....|.++|.++....+++-|...|.++..+ .|.....|...
T Consensus 831 nva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~ 894 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIP 894 (1238)
T ss_pred hhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhH
Confidence 555555555554442 2223344444554444444444444444444443 33332332222
Q ss_pred -----------------------------------HHHHHHcCChHHHHHHHHHHHH--HH-HHHhCCCChhHHHHHHHH
Q 007930 499 -----------------------------------AATYDALGRVEDAIEILEYILK--VR-EEKLGTANPDIDDEKERL 540 (584)
Q Consensus 499 -----------------------------------a~~~~~~g~~~~A~~~~~~a~~--~~-~~~~~~~~p~~~~~~~~l 540 (584)
-.....+|+.++-+...+++-. +. ...+ ..+|+...++...
T Consensus 895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf-~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF-LGHPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH-hcCcchhHHHHHH
Confidence 3333445555555544443321 11 1222 3489999999999
Q ss_pred HHHHHHhchHHHHHHHH
Q 007930 541 AELLKETGRARNRKGKS 557 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~ 557 (584)
|.+...++.+++|.+..
T Consensus 974 gstlEhL~ey~~a~ela 990 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAALELA 990 (1238)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 99999999999998533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-15 Score=141.26 Aligned_cols=334 Identities=12% Similarity=-0.012 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..+..+|.++...|+.+.+...+.++...... +....+.....+.++...|++++|...++++++..|...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 34888999999999999998888888776432 334556677789999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++...|++++|+..++++++.
T Consensus 78 ----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------- 143 (355)
T cd05804 78 ----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------- 143 (355)
T ss_pred ----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 12332 55555666555555555554433 34567777888889999999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.|....++..+|.++...|++++|+.++++++..... ........+..++.++...|++++|+..+++++...+
T Consensus 144 -~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 144 -NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 5777888999999999999999999999999987532 1223345677899999999999999999999854332
Q ss_pred hCCCCcccHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEA--QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 399 ~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
. .......+. .+...+...|....+... +.+........+. ......-...+.++...|+.++|...++..
T Consensus 218 ~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 218 E----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred C----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 111111100 222333334433322222 2222221111111 112233346788888999999999999988
Q ss_pred HHHHHHHh-CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 477 RGVLEQEC-GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 477 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
....+... .........+....+.++...|++++|...+..++.+...+.|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 77654410 00122345677788999999999999999999999998666664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-15 Score=137.98 Aligned_cols=301 Identities=15% Similarity=0.084 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
....+.-|......|++++|.+...+.-+ .. +.+ ...+...+......|+++.|..++.++.+. .+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~----~~--~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~ 149 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNAD----HA--EQP--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD 149 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cc--cch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 34445667777788999999966665433 22 112 122445566679999999999999998652 22
Q ss_pred hH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 280 EV-AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 280 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
+. .......+.++...|++++|+..+++..+. .|....++..++.+|...|++++|++.+.+..+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-- 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-- 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence 22 223334589999999999999999999887 7888999999999999999999999999988776421
Q ss_pred CCCChHHHH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 359 PATAPEEIA----NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 359 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
+..... .++..+........+ .+.+.+..+..+.. .+....+...++..+...|+.++|...++++
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122222 122222222222222 22333333222221 1222556678999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
++. ++. .......+. ...++.+++++..++.++. +|+.+..+..+|.++...|++++|.++
T Consensus 290 l~~--------~~~-~~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 290 LKR--------QYD-ERLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred Hhc--------CCC-HHHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 872 121 122222222 2459999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
|+++++. +|+.. .+..++.++.++|+.++|. .+++..+.
T Consensus 351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~ 389 (398)
T PRK10747 351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLM 389 (398)
T ss_pred HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 9999998 77764 4568999999999999998 66666553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=142.87 Aligned_cols=339 Identities=14% Similarity=0.091 Sum_probs=235.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
+|+.+..+..+|..+...|+ ++.+...+.++...... +.+........+.++...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAA------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 68889999999999999998 89988888888776442 22345556678999999999999999999999874
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.+... +.. +..+...|++..+.....+++.. ..+.+|.....+..+|.++...|++++|+..++++
T Consensus 74 ----P~~~~a----~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 ----PRDLLA----LKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----CCcHHH----HHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223221 222 55555666555555555555543 23457788888889999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
+++.|... ..+..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..++
T Consensus 141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99876543 45888999999999999999999998765322 122334567789999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHH--HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFI--RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
+++.... .......... .+...+...|....+..+ +.+.......... ..........+.++...|+.+
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 211 THIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence 9854310 0111111101 222333334433333322 2222221110001 111222235788888999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 385 EALKLLQKAMKLLEDT--PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
+|...++......... .+.......+....+.++...|++++|...+..++.....+|+.+
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999887766551 122233455666789999999999999999999999988887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=143.12 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=205.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
+..|..+.+.|+..+|.-.|+.++. .+|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 5678999999999999999999887 59999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC-CCCC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPA-PATA-PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
++..||..|...|.-.+|..++.+=+....... .... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 999999999999999999999998876542210 0000 000000 0000000111122233343433333221
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.-..+...||.+|...|+|++|+.+|+.|+. ..|.....|+.||-.+....+.++|+..|.+|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 1246777899999999999999999999998 45667899999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHhchHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD--IDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A 553 (584)
.|....+.++||..+..+|.|++|.++|-.|+.+.++..+..... .-.++..|-.++...++.+-+
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999999999999999999999999999977743321111 224555555666666666633
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-16 Score=140.35 Aligned_cols=245 Identities=11% Similarity=-0.047 Sum_probs=174.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 007930 171 MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL 250 (584)
Q Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~ 250 (584)
.+..+.++..+.+++.... .+++..+..++.+|.++...|++++|+..|++++++.|.. ..+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------ADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHH
Confidence 3566778888888775421 1234568899999999999999999999999999986543 356999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 330 (584)
++...|++++|+..|++++++ .|....++.++|.++...|++++|+..++++++. .|...... ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~~-~~ 171 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYRA-LW 171 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH-HH
Confidence 999999999999999999885 6777889999999999999999999999999987 34433211 11
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
..+....+++++|+..+.+++..... + .+ ..+.++...|+..++ ..++.+.+.........+....+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~-------~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDK-------E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCc-------c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 22345578899999999887644211 1 11 124455556666443 23333332221111112234678
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++.+|.++...|++++|+.+|++++.. .++......+.+..+...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 334445555444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-13 Score=126.97 Aligned_cols=381 Identities=13% Similarity=0.103 Sum_probs=274.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
++..+.-.+..++|...+...+..++-. ++|.. ++-..|..+..+|+-++|......++.. ++
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~-----~eHge----slAmkGL~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF-----PEHGE----SLAMKGLTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC-----Cccch----hHHhccchhhcccchHHHHHHHHHHhcc--------Cc
Confidence 3444555567889999999999988743 44553 3667899999999999999999998876 77
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....+|..+|.++....+|++|+++|+.|+.+.+++. .++..++.+..++++++.....-.+.++ .
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--------qilrDlslLQ~QmRd~~~~~~tr~~LLq------l 138 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--------QILRDLSLLQIQMRDYEGYLETRNQLLQ------L 138 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHH------h
Confidence 7888999999999999999999999999999876554 4699999999999999988877666555 3
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+..-..|...+..+...|++..|....+...+...............+......+....|.+++|.+.+..--...
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--- 215 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--- 215 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---
Confidence 66667788889999999999999999988877665422212223344555566777788888888877765543222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH-HH--H----HHHHHh---------
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA-QM--G----VMLYVV--------- 421 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~l--~----~~~~~~--------- 421 (584)
.+........+.++..++++++|...|...+...|++.........++. -. + .+|...
T Consensus 216 ------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 216 ------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred ------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 2234455667899999999999999999888877665332221111111 00 0 000000
Q ss_pred ----------c-cHH-----------------------------HHHHHHHHHHHHHHHc-CCC------------CCch
Q 007930 422 ----------G-RYG-----------------------------EARSSFESAVVKLRAS-GES------------KSAF 448 (584)
Q Consensus 422 ----------g-~~~-----------------------------~A~~~~~~a~~~~~~~-~~~------------~~~~ 448 (584)
| ++. +-...+++.+..+... .+. .+..
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 0 000 0011222222222221 111 2334
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
..++++.++.-+-..|+++.|..+...|+.. .|...+.+..-|+++...|+.++|..++.++.++
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el------- 434 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL------- 434 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Confidence 6678888999999999999999999999987 8999999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+-.+.-.-..-|.-..+..+.++|.
T Consensus 435 -D~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 435 -DTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred -cchhHHHHHHHHHHHHHccccHHHH
Confidence 3333333335677778888888887
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-15 Score=138.06 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
.+.-|......|++++|.+...++-+. .+.-...+...+......|+++.|..++.++.+..++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~--------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~------ 152 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH--------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ------ 152 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch------
Confidence 455677777789999999766654333 111122344446666999999999999999987554332
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+ .....+.++...|++++|+..+++..+ ..|....++..++.+|...|++++|+..+.+..+.... .
T Consensus 153 ~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~------~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-----~ 220 (398)
T PRK10747 153 LP-VEITRVRIQLARNENHAARHGVDKLLE------VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-----D 220 (398)
T ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-----C
Confidence 11 123448899999999999999998766 36777788899999999999999999999887765110 1
Q ss_pred ccHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 321 LSVA-----SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
+... .++..+........+ .+.+.+..+... ...+........++..+...|+.++|...++++++
T Consensus 221 ~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp-----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 221 EEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS-----RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC-----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1111 122222221112222 223333332221 11234467888899999999999999999999887
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
. +. ++.... .......++.+++++.+++.++. +|..+..+..+|.++...+++++|.++|++
T Consensus 292 ~-~~----~~~l~~-----l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 292 R-QY----DERLVL-----LIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred c-CC----CHHHHH-----HHhhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 11 121111 12223458999999999988873 555678899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+++. .|+. ..+..++.++.++|+.++|..+|++++.+.
T Consensus 354 al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 354 ALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9998 7776 456789999999999999999999998864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-14 Score=136.22 Aligned_cols=374 Identities=12% Similarity=0.086 Sum_probs=258.2
Q ss_pred cCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007930 128 LGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLA 207 (584)
Q Consensus 128 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 207 (584)
..+...|...|-+++.+... . ..++..+|.+|....+...|...|.+|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld~~-----~----apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVS-----L----APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccc-----h----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 34467777888887776421 1 134888999999999999999999999999 888999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
..|....+++.|....-.+-+..+... ....|...|..|...+++..|+..|+.+++. +|.....+..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHH
Confidence 999999999999988555544433222 1233666999999999999999999999884 8888999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
+|.+|...|++..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+...... .......+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e--~~~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE--RTGQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhhHH
Confidence 999999999999999999999988 78888899999999999999999999999988765432 11223457
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHh-----------------------cc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVV-----------------------GR 423 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----------------------g~ 423 (584)
.++..++..+...|-...|..+++++++.+....... ......+..+|.++.-. +.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7788888888888888888888888887664432211 11111111222211111 00
Q ss_pred H------HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 424 Y------GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--------LYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 424 ~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
. --+.+++-..+... ..+..|+++|.-|.. +.+...|+.++++++++. .
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~---------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------a 814 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLA---------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------A 814 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHh---------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------h
Confidence 0 11222222222221 114568888887775 234458999999999983 3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+....|..||.+ ...|++.-|..+|-+.+.. .|...-.|.|+|.++....+++-|. ..+..+....|.
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL 882 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence 334455555555 4445666666666666555 4555555566666665555555555 444444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-13 Score=116.88 Aligned_cols=412 Identities=17% Similarity=0.079 Sum_probs=254.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHH
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSG 160 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (584)
+....+ |..|+.+++-.+..- ..+....-..+|.|++.+|+|++|+..|.-+.+. . ++.. ..
T Consensus 32 fls~rD-ytGAislLefk~~~~--------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~-~~~~--el 93 (557)
T KOG3785|consen 32 FLSNRD-YTGAISLLEFKLNLD--------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------D-DAPA--EL 93 (557)
T ss_pred HHhccc-chhHHHHHHHhhccc--------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------C-CCCc--cc
Confidence 445556 999999998887541 2222344557899999999999999999887652 1 1111 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH----------HHHHhCCC---------ChHHHHHHHHHHHHHHHhCCHHHHHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEI----------QIEALGDS---------DPRVAETCRYLAEAHIQAMQFDEAEN 221 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (584)
..+++.|++.+|.|.+|...-.++-+. ..+. ++. -.+..+-...||.+++..-.|.+|+.
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 788999999999999999877665221 1111 000 01122334456667777777888888
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc--CChh
Q 007930 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL--CRFD 299 (584)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 299 (584)
.|.+++.-.++.. ..-..++.+|.++.-++-+.+.+.--++ . .|+...+.+..+...++. |+..
T Consensus 173 vYkrvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~---q---~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 173 VYKRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLR---Q---FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHH---h---CCCcHHHHHHHHHHHhhhhccchh
Confidence 8888876444332 3355678888888888887777664443 2 333333333333333322 2222
Q ss_pred HHH----------------HHHHH----------HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 300 EAI----------------FSYQK----------GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 300 ~A~----------------~~~~~----------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
+++ ..++. +++.... --...+.+..++...|..+++..+|...++..
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~----L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl--- 311 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS----LMKHIPEARLNLIIYYLNQNDVQEAISLCKDL--- 311 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH----HHhhChHhhhhheeeecccccHHHHHHHHhhc---
Confidence 211 11110 1111000 01234567778888888999988887765542
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHHHHHhccHHHHHHHH
Q 007930 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY--HSTIAGIEAQMGVMLYVVGRYGEARSSF 431 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (584)
.|....-+...|.++...|+--...++++-|.+.+.-..+. ..+...-...++.+++-..++++.+.++
T Consensus 312 ---------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 312 ---------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred ---------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 12234556677888888887766666666665554433111 1111122345778888888999999888
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA 511 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 511 (584)
...-..+.. .....+++++++...|++.+|.+.|-+.-. ++-.+.......||+||...++++-|
T Consensus 383 nSi~sYF~N--------dD~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 383 NSIESYFTN--------DDDFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHhcC--------cchhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 776554321 124577899999999999999988865432 22334445677899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 512 IEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
...+-+.-. ..+....+..++......+.+==|. +.+..+-..+|
T Consensus 448 W~~~lk~~t---------~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMMLKTNT---------PSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDP 492 (557)
T ss_pred HHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCC
Confidence 887755322 2333445556677777777766555 45554444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-16 Score=139.82 Aligned_cols=268 Identities=16% Similarity=0.125 Sum_probs=195.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
..|..+++.|+..+|.-.|+.++... +.+. .+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~ha----eAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQHA----EAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----hHHH----HHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56888899999999999999988654 2232 56999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..++..||..|...|.-.+|..++.+-+...+.......... .-......-......+..-.+.|-.+.. ..+ ..
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa~---~~~-~~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAAR---QLP-TK 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHHH---hCC-CC
Confidence 999999999999999999999999888776543221000000 0000000000000111222223332222 222 12
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....+...||.+|...|+|++|+.+|+.|+.. .|.....|+.||-.+..-.+.++|+..|.+|+++.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq----- 494 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ----- 494 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----
Confidence 45678889999999999999999999999998 89999999999999999999999999999999996
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc---HHHHHHHHHHHHHHhccHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST---IAGIEAQMGVMLYVVGRYGE 426 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 426 (584)
|..+++.++||..++.+|.|++|.++|-.|+.+.+...+.... --.++..|-.++...++.+-
T Consensus 495 ----P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 495 ----PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred ----CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 5568999999999999999999999999999998875332111 12233344455555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-12 Score=111.87 Aligned_cols=429 Identities=11% Similarity=0.093 Sum_probs=297.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHH
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSG 160 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (584)
+.+-++ +++...-+++|-+++++..+.+ ......+...+.+-++......|..++++|+.+.+... ..
T Consensus 76 WikYaq-wEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd---------ql 143 (677)
T KOG1915|consen 76 WIKYAQ-WEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD---------QL 143 (677)
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH---------HH
Confidence 333344 4444444444444444443222 22455667788888999999999999999998874321 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
++....+-..+|+..-|.+.|++-++. .|+ ..++......-.+..+.+.|...|++-+-..|+.
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w--------~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v------- 207 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEW--------EPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKV------- 207 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcC--------CCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH-------
Confidence 555566667789999999999999887 443 2455556666677788899999999887655433
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
..+...+..-...|+..-|...|++|+..+. ++......+...|..-..+..++.|.-.|+-+++...+
T Consensus 208 --~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk------ 276 (677)
T KOG1915|consen 208 --SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK------ 276 (677)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------
Confidence 3477888888899999999999999887543 45555566667777777888899999999988886321
Q ss_pred ccHHHHHHHHHHHHHHcccH---HHHHHH-----HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKL---RESKSY-----CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~---~~A~~~-----~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
...-..+......--+-|+. ++++.. |++.+.. +|....+|...-.+-...|+.+.-.+.|++
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---------np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---------NPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---------CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11122333333333334443 333322 2222221 233456777777788888999999999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 393 AMKLLEDTPGYHSTIAGIEAQMGVML---YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 393 a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
|+...+.......-.-.+|..+-.++ ....+.+.+.+.|+.++++... .....+.+|...|.....+.+...|
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH----kkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH----KKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc----ccchHHHHHHHHHHHHHHHcccHHH
Confidence 99876554222221122333333332 4567899999999999986432 4556788899899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
.+.+-.|+.. .|.. ........+-.++++++....+|++-++. .|++..++...|.+-..+|+
T Consensus 424 RkiLG~AIG~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 424 RKILGNAIGK--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHhcc--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhh
Confidence 9999999887 4432 45555666677888999999999998887 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhHhhc
Q 007930 550 ARNRKGKSLENLLDSNAYRVKKEVTKRRSG 579 (584)
Q Consensus 550 ~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~ 579 (584)
.+.|. ..++.+++.+.-....-+.++|-.
T Consensus 487 tdRaR-aifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 487 TDRAR-AIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HHHHH-HHHHHHhcCcccccHHHHHHHhhh
Confidence 99998 888888876665555555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-11 Score=107.77 Aligned_cols=436 Identities=14% Similarity=0.072 Sum_probs=271.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
..|+...++.....++.+.++ |++|+...+.-... .......+..+.|.++++..++|+..++- ++
T Consensus 41 ~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-~~-- 106 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEKAYCEYRLNKLDEALKTLKG-LD-- 106 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHHHHHHHHcccHHHHHHHHhc-cc--
Confidence 447777777778888888888 88877444332211 00111125788999999999999999882 11
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----------------------HHHhCCCChHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ-----------------------IEALGDSDPRVAET 202 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~ 202 (584)
..+. ..+...|.+++++|+|++|...|+..++-. .+..........+.
T Consensus 107 -----~~~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 107 -----RLDD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred -----ccch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 1111 236678999999999999999998874321 01111112235678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA-------SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
+++.+.++...|+|.+|++.++++++++.+..... ......+...++.++..+|+..+|...|...+.. ..
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~ 255 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NP 255 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cC
Confidence 89999999999999999999999988877643211 2235667888999999999999999999876542 33
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHH----HHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDE-AIFSYQKGLTV----FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.+..+.+-+++-.+-....-++. ++..++..... ..... .+.....++.+.+.+.+..+.-+.+.+....
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~- 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAIYRNNALLALFTNKMDQVRELSAS- 332 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-
Confidence 4455556565665544333322221 11111111100 00000 0122333445555555555554444433222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+ ++..+.....++..-+ .......+.+|.+++...-+-.+ .....+...++.+...+|+++.|++.
T Consensus 333 --l-----p~~~p~~~~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p------~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 333 --L-----PGMSPESLFPILLQEA-TKVREKKHKKAIELLLQFADGHP------EKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred --C-----CccCchHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhccCC------chhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 1222233333333222 22222356677776665443322 22245666788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+...+.......... ...+.+-..+-..+...++.+.|...+.+|+..++..... .+.....+..++..-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHH
Confidence 996553322211110 0112333445556777788888999999999987765443 34555667777888888899999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 511 A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
|...+++.++. +|...+++..+...|... +.+.|.
T Consensus 477 a~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 477 ASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred HHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 99999999998 788889998888887755 444444
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-10 Score=103.85 Aligned_cols=451 Identities=14% Similarity=0.046 Sum_probs=294.7
Q ss_pred cHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHH
Q 007930 70 LGPFLLKLARETISSG--DNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~ 146 (584)
.+..++.+|..+...| + ..+++.+++..... ..+..-.+.+...+|.+++ ...+++.|...++++..+.+
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4567889999888888 6 77788777766654 2234445677778887765 47899999999999998876
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMG-LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
....- ....+.+...++.+|.... .+..+...+++++++.+.. .-.....++.|+.++.-..++..|++.+.-
T Consensus 79 ~ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 79 SIPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred ccccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 55332 2445567888999998877 8999999999999996543 234456788899999999999988877432
Q ss_pred HHHHHHHhC------------------CCCCHHHHHHHHHHHH-------------------------HHHHhccHHHHH
Q 007930 226 ILEIHREHG------------------HSASLEEAADRRLMAL-------------------------VYEAKADYESAL 262 (584)
Q Consensus 226 al~~~~~~~------------------~~~~~~~a~~~~~l~~-------------------------~~~~~g~~~~A~ 262 (584)
..+...... ..+..++-.+....|. .|...|+...+.
T Consensus 153 ga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k 232 (629)
T KOG2300|consen 153 GAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVK 232 (629)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhH
Confidence 211111000 0000111111111111 122234443333
Q ss_pred HHHHHHHHHHHHcCC------------cc-h--------HHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 263 EHLVLASMVMIANGQ------------EN-E--------VAAIDVSIGN--IYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 263 ~~~~~a~~~~~~~~~------------~~-~--------~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+++.-........ ++ . ...++..+-. --...|-+++|.++-++++...++....+
T Consensus 233 ~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d 312 (629)
T KOG2300|consen 233 PALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQAD 312 (629)
T ss_pred HHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccccc
Confidence 333322111111100 00 0 1111111111 11345778899999999888766655333
Q ss_pred c------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 320 H------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA--TAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 320 ~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
- ......+..+..+-.-.|++.+|++....+.+.+.+. ++ --....+.+.+.+|.....-+.++.|...|.
T Consensus 313 ~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~-p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 313 LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF-PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 1 1122344566777778999999999999999887663 11 1122346677778888888899999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-C-----chHHHHHHHHHHHHHhhCC
Q 007930 392 KAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-S-----AFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~ 465 (584)
.|.+..... ...+.+..++|..|...|+-+.-.+ +++. ++..+ . ...+.+++..|...+.+++
T Consensus 392 ~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ 460 (629)
T KOG2300|consen 392 EATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK----ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQND 460 (629)
T ss_pred HHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH----HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 998875443 2346667789999999887544333 2322 22221 1 1234567777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+.||...+.+.+++..... .+.-.+..+..|+.+....|+..++.+..+-++++.+++.+ +|-.......+-.++.
T Consensus 461 lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D--i~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 461 LNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQ 536 (629)
T ss_pred HHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC--chHHHHHHHHHHHHHH
Confidence 9999999999999852221 13345567788899999999999999999999999887644 7777788888888999
Q ss_pred Hhch
Q 007930 546 ETGR 549 (584)
Q Consensus 546 ~~g~ 549 (584)
..|+
T Consensus 537 a~g~ 540 (629)
T KOG2300|consen 537 ALGE 540 (629)
T ss_pred HhCc
Confidence 9988
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=124.55 Aligned_cols=292 Identities=17% Similarity=0.114 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+.-....|..+....+|.+|+..+..|+.. .|+.+..|.+.+.+++..|+|++|....++.+++ .
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--------k 113 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDM------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--------K 113 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHh------CccchhhhchhHHHHHHHHhHhhcccchhhheec--------C
Confidence 3444566778888899999999999999886 5556888999999999999999999999998887 5
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHH--------HHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENAL--------RVCAKPAP-ATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
+.........+.++...++..+|.+.++..- ...+...+ ....|........-+.++...|++++|...--
T Consensus 114 d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 114 DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 6677778888888888888888876665221 11111111 11224445566667889999999999988777
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhCCHH
Q 007930 392 KAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES----KSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
..+++.... ...+...|.++...++.+.|+..|++++.+-+..... ..+.....+..-|.-.++.|++.
T Consensus 194 ~ilkld~~n-------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 194 DILKLDATN-------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHhcccch-------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 666665554 5677788999999999999999999999864332110 11223456667788899999999
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 468 EATELFEEARGVLEQECGSC-HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|.+.|..++.+ +|. ....+..|.+++.+..++|+..+|+...+.++.+ ++....++..-|.++..
T Consensus 267 ~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 267 KAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHH
Confidence 999999999998 222 2234667899999999999999999999999999 99999999999999999
Q ss_pred hchHHHHHHHHHHHHHhhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+++|++|. ..++.++....+
T Consensus 334 le~~e~AV-~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAV-EDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHH-HHHHHHHhhccc
Confidence 99999999 888887755443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-12 Score=121.66 Aligned_cols=318 Identities=14% Similarity=0.125 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
.+++.....++...|++++|++++++..... .+ ....+-..|.++..+|++++|...|...++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-----~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-----LD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDR------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-----CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 4566677889999999999999998754432 11 1245788999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAM-----QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLAS 269 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~ 269 (584)
+|+....+..+..+..... +.+.-..+|++.....|.... ...+...+..-.+|......|-.-
T Consensus 68 -NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~---------~~rl~L~~~~g~~F~~~~~~yl~~- 136 (517)
T PF12569_consen 68 -NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA---------PRRLPLDFLEGDEFKERLDEYLRP- 136 (517)
T ss_pred -CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc---------hhHhhcccCCHHHHHHHHHHHHHH-
Confidence 7888888888888774433 455666777766665554332 112222222223344333333221
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc--------CCcc-cHHHHHHHHHHHHHHcccH
Q 007930 270 MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG--------EDHL-SVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~ 340 (584)
.. ...++.+..++-.+|....+..-....+.......+.... ...| ...++++.+|..|...|++
T Consensus 137 --~l----~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 137 --QL----RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred --HH----hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 11 2233344455555555333322222222222222111100 1122 2367889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
++|+++++++++.. |..+..+...|.++...|++.+|.+.++.|..+.... -.+....+..+++
T Consensus 211 ~~Al~~Id~aI~ht---------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR 274 (517)
T PF12569_consen 211 EKALEYIDKAIEHT---------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence 99999999999885 4457899999999999999999999999998876554 3344567888899
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCC--C---CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 421 VGRYGEARSSFESAVVKLRASGES--K---SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.|+.++|...+..-.. .+.. . .-...+.....|.+|.+.|++..|+..|..+.+.+.....
T Consensus 275 a~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877665432 1110 0 1123455566799999999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-10 Score=103.71 Aligned_cols=464 Identities=14% Similarity=0.096 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++.....+..+|+ ...-...|.+|+..++-.. |. ..+-..-......|-.+-++..|++-+++.+..
T Consensus 103 RIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvtq----H~---rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~--- 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVTQ----HD---RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA--- 171 (835)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchHh----hc---cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH---
Confidence 345556667778888 8888888888887644321 22 222222233344555567777777777665321
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-------------------------------------HHhCC
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI-------------------------------------EALGD 194 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~ 194 (584)
....-..+...++.++|.+.+...+..-+ ...+.
T Consensus 172 ---------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 172 ---------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred ---------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 11122334455566666555554432110 00001
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC---------------------------CCHHHHHHHH-
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS---------------------------ASLEEAADRR- 246 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~a~~~~- 246 (584)
-.......+..||..|.+.|.+++|...|++++...-...+- +.......-.
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 122345688999999999999999999999997643211110 0000000000
Q ss_pred -----------------------------HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 007930 247 -----------------------------LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297 (584)
Q Consensus 247 -----------------------------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 297 (584)
.+-.+-...|+..+-+..|.+|+....-..........+..+|..|...|+
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 011122224556666667776665433333344556778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC----CCCCChH-----HHHH
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP----APATAPE-----EIAN 368 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~~~ 368 (584)
.+.|...|+++...--. ...+.+.+|...|..-....+++.|+.+++.+...-... +.+..+. ....
T Consensus 403 l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred HHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999876111 123457889999999999999999999999987653321 0111111 1234
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+|...+.+....|-++.....|++.+++.-.. ..+..+.|..+....-++++.+.|++.+.+++ .|.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~ 545 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPN 545 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------Ccc
Confidence 56666777777788888888888887765433 45566888888888899999999999888763 343
Q ss_pred HHHHHHHHH---HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHcCChHHHHHHHHHHH-----
Q 007930 449 FGIVLNQMG---LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV-YSNLAATYDALGRVEDAIEILEYIL----- 519 (584)
Q Consensus 449 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~----- 519 (584)
...+|...- ..-+..-..+.|..+|++|++.+ .|..+.. +...+..-..-|--..|+..|++|.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 444444332 22233457889999999999874 3444443 3344555566677777777776653
Q ss_pred -----------HHHHHHhCC--------------CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 520 -----------KVREEKLGT--------------ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 520 -----------~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
.....++|. .+.+........+.+-..+|..+.|. ..+.-.-...+.+...+..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhhhcCCCcCChHHH
Confidence 122223332 13344455667788888899999888 3333333445556677777
Q ss_pred hHhhcC
Q 007930 575 KRRSGF 580 (584)
Q Consensus 575 ~~~~~~ 580 (584)
+.|..+
T Consensus 698 ~twk~F 703 (835)
T KOG2047|consen 698 DTWKEF 703 (835)
T ss_pred HHHHHH
Confidence 777654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-10 Score=99.87 Aligned_cols=429 Identities=14% Similarity=-0.001 Sum_probs=278.2
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHh
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~ 147 (584)
-.+...+++|..++.--+|.+.|...+++|..+.+.+.... .....+...|+.+|.... .+..|...+++++++...
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 34667899999998888789999999999999988775321 334677889999999887 899999999999999743
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHH
Q 007930 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA------------------LGDSDPRVAETCRYLAEA 209 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~ 209 (584)
.|......++.++..+.-..++..|++.+.-.-+.+... ...+..++..+....+.+
T Consensus 122 -----~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi 196 (629)
T KOG2300|consen 122 -----VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQI 196 (629)
T ss_pred -----CchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 333333568899999999999999988753322111000 001111111111222221
Q ss_pred HHHh-CCH--HHHHHHHHHHHHHH---------------------HHhCC------------CCCHHHH--------HHH
Q 007930 210 HIQA-MQF--DEAENLCKKILEIH---------------------REHGH------------SASLEEA--------ADR 245 (584)
Q Consensus 210 ~~~~-g~~--~~A~~~~~~al~~~---------------------~~~~~------------~~~~~~a--------~~~ 245 (584)
.... ++. .|.++.|--.+++. ..... .+++... .++
T Consensus 197 ~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaL 276 (629)
T KOG2300|consen 197 WQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICAL 276 (629)
T ss_pred HhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhh
Confidence 1100 110 11222221111110 00000 0111110 111
Q ss_pred HHHHHH--HHHhccHHHHHHHHHHHHHHHHHcCCcchH--------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 246 RLMALV--YEAKADYESALEHLVLASMVMIANGQENEV--------AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 246 ~~l~~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
..+-.+ -...|-+++|.++-++++....+....+.. ...+.++..+-.-.|++.+|++....+.+.+.+.
T Consensus 277 V~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~ 356 (629)
T KOG2300|consen 277 VYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF 356 (629)
T ss_pred hhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 111111 123577899999999998877666554422 3344566777788999999999999998887765
Q ss_pred hcCC--cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 316 RGED--HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 316 ~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
.++- ....+.+...+|......+.++.|...|..+.+..... ...+.+-.++|.+|...|+-+.-.+.++.
T Consensus 357 p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~- 429 (629)
T KOG2300|consen 357 PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAEDLYKALDL- 429 (629)
T ss_pred CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHHHHHHHHHh-
Confidence 4311 22345667778888888999999999999999886442 34566778899999998875543333222
Q ss_pred HHHHHhCCC---CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 007930 394 MKLLEDTPG---YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEAT 470 (584)
Q Consensus 394 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (584)
+.+.+.. .....+.+++..|...+.++++.||...+.+.+++.... +.....+..+..+|.+....|+..++.
T Consensus 430 --i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 430 --IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred --cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222101 122345677788889999999999999999999986332 123345667788899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR--VEDAIEILEY 517 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 517 (584)
+...-++.+.+++.+ .+-.......+-.+|...|+ .+...+.+.+
T Consensus 506 nmvrpamqlAkKi~D--i~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hccchHHHHHhcCCC--chHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 999999999887644 66656666677788888888 5556555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-10 Score=110.80 Aligned_cols=299 Identities=18% Similarity=0.128 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
.+.++-.+.++...|+ +++|+++++..... -.+....+...|.++..+|++++|...|...+...+
T Consensus 4 SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~---------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP---- 69 (517)
T PF12569_consen 4 SELLLYKNSILEEAGD-YEEALEHLEKNEKQ---------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP---- 69 (517)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHhhhhh---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----
Confidence 4667788889999999 99999999776543 344567778999999999999999999999998763
Q ss_pred CchhhhHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHhCC--------CCh----------------HHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSM-----GLLDRSVWCYESGLEIQIEALGD--------SDP----------------RVAE 201 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~ 201 (584)
++.. .+..+..+.... .+.+.-..+|++....+++.... ... .++.
T Consensus 70 -dn~~----Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 70 -DNYD----YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred -CcHH----HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 2222 234444443222 23444455555443332110000 000 0112
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH---------SASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
....+-.+|....+..-...++...+........ .......++++.++..|...|++++|++++++++..
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 2222222333222222222222222222111110 112334678899999999999999999999999884
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
.|.....+...|.++-..|++.+|.+.++.+..+ +...-.+....+..+.+.|+.++|...+..-..
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 7888999999999999999999999999999887 566666777788889999999999887765533
Q ss_pred HHhcCCCCCCh--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 353 VCAKPAPATAP--EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 353 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
.... +..+- ....+.....|.+|.+.|++..|++.|....+++.+...+.
T Consensus 291 ~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 291 EDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred CCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 2211 11111 12344556679999999999999999999999988775543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=121.57 Aligned_cols=229 Identities=19% Similarity=0.196 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL 321 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 321 (584)
+..+...|..|...|++++|.+.|.++.......++....+..+...+.++... ++++|+.+++++++++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 455666778888889999999999999999988888888888988888888766 99999999999999998765 345
Q ss_pred cHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 322 SVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
..+.++..+|.+|... |++++|+++|++++++++. .........++..+|.++...|+|++|++.|++......+.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~---e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ---EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 6688999999999999 9999999999999999987 33566778899999999999999999999999987754333
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARG 478 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~ 478 (584)
..........+...+.+++..|++..|...+++......... ...-......+-.++.. ...+++|+.-|.....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~---~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA---SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST---TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 222334445667788899999999999988888766422221 12234556666666654 3567777777766655
Q ss_pred H
Q 007930 479 V 479 (584)
Q Consensus 479 ~ 479 (584)
+
T Consensus 266 l 266 (282)
T PF14938_consen 266 L 266 (282)
T ss_dssp -
T ss_pred c
Confidence 5
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=110.57 Aligned_cols=389 Identities=12% Similarity=0.080 Sum_probs=253.1
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-----
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV----- 144 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 144 (584)
.-..-+-+|.+++..|+ |++|+..|+-+... .+. .++...+|+-+++-+|.|.+|.....++-+.
T Consensus 56 E~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~R 125 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIR 125 (557)
T ss_pred hHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHH
Confidence 34455668899999999 99999988877652 122 2456668999999999999999876655221
Q ss_pred -----HHhccCCchhhh--------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 007930 145 -----VDIGKGSDRALA--------KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI 211 (584)
Q Consensus 145 -----~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 211 (584)
..+.. .+.... ..+-...++.+.+..-.|++|++.|.+++.- +|+....-..+|.||+
T Consensus 126 Llfhlahkln-dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyy 196 (557)
T KOG3785|consen 126 LLFHLAHKLN-DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYY 196 (557)
T ss_pred HHHHHHHHhC-cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHH
Confidence 11111 111100 1122456777788888899999999998876 7888888889999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--ccHHHHHH--H-------HHHHHHHHHH------
Q 007930 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK--ADYESALE--H-------LVLASMVMIA------ 274 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~--g~~~~A~~--~-------~~~a~~~~~~------ 274 (584)
+..-++-+.+.+.--++..++.. .+.+..+...++. |+..++.. . |..+..+++.
T Consensus 197 KlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred hcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 99999998888877776554332 1233333333332 22211110 0 0011111110
Q ss_pred cCC---------cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHH
Q 007930 275 NGQ---------ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKS 345 (584)
Q Consensus 275 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 345 (584)
.+. -..+..+..++...|..+++..+|....+.. .|..+.-+...|.++...|+-....+
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 000 1123566788888999999999988776542 67888888888999998888777777
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH
Q 007930 346 YCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG 425 (584)
Q Consensus 346 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (584)
+++-+-....-.......-+.......++.+++...++++.+.++...-..+.+. -....+++.++...|++.
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-------D~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-------DDFNLNLAQAKLATGNYV 410 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chhhhHHHHHHHHhcChH
Confidence 6666655443322121222333445567788888889999999887766655443 234568999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|++.|-+.-.. .-.........++.+|...++++-|...+-+.-. ..+....+..+|......
T Consensus 411 eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---------~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 411 EAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---------PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---------chhHHHHHHHHHHHHHHH
Confidence 999998765431 1112234566789999999999999887754211 233444566678878888
Q ss_pred CChHHHHHHHHHHH
Q 007930 506 GRVEDAIEILEYIL 519 (584)
Q Consensus 506 g~~~~A~~~~~~a~ 519 (584)
+++=-|.+.|...-
T Consensus 475 ~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 475 NEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHHHhhhHHH
Confidence 87766666665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-09 Score=96.80 Aligned_cols=430 Identities=14% Similarity=0.059 Sum_probs=287.7
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
....++..+..-+.... ...|...+++|+.+++ ..-..++.....--.+|+..-|.+.|++-++..
T Consensus 106 ~itLWlkYae~Emknk~-vNhARNv~dRAvt~lP---------RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~---- 171 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQ-VNHARNVWDRAVTILP---------RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE---- 171 (677)
T ss_pred cchHHHHHHHHHHhhhh-HhHHHHHHHHHHHhcc---------hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC----
Confidence 34445555555555555 5666666666665533 233444444555556899999999999987653
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (584)
|.. .++......-...+..+.|...|++-+-. ||. ...+...+..-...|+..-|...|++|++.
T Consensus 172 ----P~e--qaW~sfI~fElRykeieraR~IYerfV~~--------HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 172 ----PDE--QAWLSFIKFELRYKEIERARSIYERFVLV--------HPK-VSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred ----CcH--HHHHHHHHHHHHhhHHHHHHHHHHHHhee--------ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 111 23555556666778889999999988776 654 467788888899999999999999999988
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH--HH
Q 007930 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY--QK 307 (584)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~ 307 (584)
..+. ..........+..-..+..++.|.-.|.-|+..+.+. ..-..+-..-..--+-|+...-.+.. .+
T Consensus 237 ~~~d-----~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~----raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 237 LGDD-----EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG----RAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred hhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7543 2233445566666677788888888888777643211 11222233333333445543222211 11
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHHhcCHHHH
Q 007930 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI-YEALNEHEEA 386 (584)
Q Consensus 308 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A 386 (584)
-++. +... .++|..-.+++..-.+-...|+.+.-.+.|++|+...+-.............|.+.+.. -....+.+.+
T Consensus 308 k~qY-E~~v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQY-EKEV-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHH-HHHH-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1111 1111 12677888888888888889999999999999997653211000111122233333321 2346789999
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
.+.|+.++++.|.. ....+.++...|....++.+...|.+.+-.|+..+.. ..+......+-.+++++
T Consensus 386 r~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK---------~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 386 RQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK---------DKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc---------hhHHHHHHHHHHHHhhH
Confidence 99999999987644 6677888888999999999999999999999875322 34555556677788999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+....+|++-++. .|....++...|.+-..+|+.+.|...|+-|++-- .-+-|. -.+......-..
T Consensus 454 DRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldmpe--llwkaYIdFEi~ 519 (677)
T KOG1915|consen 454 DRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAISQP----ALDMPE--LLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhh
Confidence 9999999999998 88999999999999999999999999999888731 011222 223344555667
Q ss_pred hchHHHHHHHHHHHHHhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~ 566 (584)
.|.++.|. ..++.+|+..+
T Consensus 520 ~~E~ekaR-~LYerlL~rt~ 538 (677)
T KOG1915|consen 520 EGEFEKAR-ALYERLLDRTQ 538 (677)
T ss_pred cchHHHHH-HHHHHHHHhcc
Confidence 88888888 77777776544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-12 Score=113.62 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=174.7
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG-KLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
++...+++++|+..+.+++++ +|....++...+.++..+| ++++++.++++++....+ ...+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---------nyqa 108 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---------NYQI 108 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---------chHH
Confidence 455678999999999999998 7899999999999999998 689999999999988543 3567
Q ss_pred HHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 370 LTEISAIYEALNEH--EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 370 ~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
|...+.++...|+. ++++.+++++++..++. ..++...+.++...|+++++++++.++++. .+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~ 173 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DV 173 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CC
Confidence 88888888888874 67899999999887776 678889999999999999999999999985 34
Q ss_pred hHHHHHHHHHHHHHhh---CCH----HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQL---YRI----NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILE 516 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 516 (584)
....+|+.++.+.... |.+ ++++.+..+++.+ .|+...++..++.++.. +++..+|...+.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 4567889999887765 333 5788888899998 88888999999999988 455677888888
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 517 YILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 517 ~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+++.. .|....++.-|+.+|...
T Consensus 246 ~~~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred Hhhcc--------cCCcHHHHHHHHHHHHhh
Confidence 87764 788889999999999864
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=117.36 Aligned_cols=229 Identities=19% Similarity=0.185 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
.+..+...|.+|...+++++|...|.++.....+.. +....+..+...+.++... ++++|+.++++++.++...+..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 355667778888999999999999999999988865 4566677788888887666 9999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 279 NEVAAIDVSIGNIYMSL-CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++........
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 999999999999999998764 234567788899999999999999999999998765331
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~ 435 (584)
.......-..+...+.++...||+..|...+++.....+...+ .....+...+-.++.. ...+.+++.-|.+.-
T Consensus 189 --~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 189 --NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp --CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred --cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1123344556677888999999999999998887776655433 2224444455555543 335666666665544
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 265 ~ 265 (282)
T PF14938_consen 265 R 265 (282)
T ss_dssp -
T ss_pred c
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=114.33 Aligned_cols=187 Identities=14% Similarity=0.021 Sum_probs=148.0
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......++.+|..+...|++++|+..+++++...+. .+....++..+|.++...|++++|+..++++++..++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 4667789999999999999999999999999887532 3455678899999999999999999999999998775
Q ss_pred CCCCcccHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHcCCCCC---------chHHHHHHHHHHHHHh
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV--------GRYGEARSSFESAVVKLRASGESKS---------AFFGIVLNQMGLACLQ 462 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~ 462 (584)
.. ....+++.+|.++... |++++|+..+++++........... .........+|.++..
T Consensus 103 ~~----~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 103 HP----DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred CC----chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2234677888888876 8899999999999875322100000 0001112467889999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.|++.+|+..++++++. .++.|....++..+|.++..+|++++|..+++.....
T Consensus 179 ~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 179 RGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred cCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999988 3445677899999999999999999999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-13 Score=116.03 Aligned_cols=180 Identities=17% Similarity=0.087 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+.....++.+|..+...|++++|+..+++++...+.. +....++..+|.++...|++++|+..++++++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---- 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---- 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc----
Confidence 4557789999999999999999999999998876543 22345678999999999999999999999998643
Q ss_pred CCCchHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCCchHH---H--------------HHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQL--------YRINEATELFEEARGVLEQECGSCHLDTLG---V--------------YSNL 498 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~--------------~~~l 498 (584)
.++....+++.+|.++... |++++|+..+++++.. +|.... + ...+
T Consensus 102 -~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 102 -NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred -CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456788999999876 8899999999999987 443322 2 2467
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
|.+|...|++.+|+..++++++.+ +++|....+++.+|.++..+|++++|. ..++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCC
Confidence 889999999999999999999873 335777899999999999999999999 67777665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-11 Score=106.62 Aligned_cols=209 Identities=11% Similarity=-0.029 Sum_probs=170.3
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
++...+.+++|+..+.+++.+ .|....++...+.++..+| ++++++..+.+++.. +|....+++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~ 111 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH 111 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence 344557788999999999885 7888889999999999998 689999999999987 7888889999
Q ss_pred HHHHHHHcccH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH
Q 007930 330 LADLYYRIGKL--RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407 (584)
Q Consensus 330 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 407 (584)
.+.++...|+. ++++.+++++++...+ ...+|...+.++...|+++++++++.++++..+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk---------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------- 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK---------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------- 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------
Confidence 99999888874 7789999999988543 46899999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVV---GRY----GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEA 476 (584)
Q Consensus 408 ~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a 476 (584)
..+++..+.+.... |.+ ++++.+..+++.+ .|....+|..++.++.. .++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 55777777777665 333 4678888888875 34456788888888877 35567788888887
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+.. .+....++..|+.+|...
T Consensus 248 ~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc--------cCCcHHHHHHHHHHHHhh
Confidence 765 677778999999999863
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=102.81 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
..++++++++.+.. +..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 45678888776553 346899999999999999999999984 555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|+..|++++.+ +|....+++++|.++...|++++|+..|++++.+ .|+....+.+.+.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 9999999999998 8899999999999999999999999999999998 78888888888877665
Q ss_pred hc
Q 007930 547 TG 548 (584)
Q Consensus 547 ~g 548 (584)
++
T Consensus 139 l~ 140 (144)
T PRK15359 139 VD 140 (144)
T ss_pred HH
Confidence 43
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-09 Score=90.06 Aligned_cols=302 Identities=16% Similarity=0.082 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 281 (584)
...+-|..-...|+|.+|++...+.-+..+ .+ ..++..-+.....+|+++.+-.++.++-+. .....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e------~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~~ 152 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGE------QP--VLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDDT 152 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCc------ch--HHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCch
Confidence 344455666778999999998887543321 22 234667778888999999999999887542 12344
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..+....+.+....|+++.|..-..++++. .|....++.....+|...|++.....++.+..+.. -
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence 556788899999999999999999999888 78888899999999999999999988887765542 1
Q ss_pred ChHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAI--YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 362 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
-+.....-+.+.+.. +...++-..+.. +....+-.+.....++ .+...++.-+...|+.++|.+..+++++..
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~- 293 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIEDALKRQ- 293 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHhc-
Confidence 111222222222221 122222222222 2222222222222222 334467888899999999999999998841
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+ ......++ ...-+++..=++..++.++. +|+.+..+..||.++.+.+.|.+|..+|+.++
T Consensus 294 -------~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 294 -------WD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred -------cC-hhHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12111111 23457888888888888887 88888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.. .| ....+..+|.++.++|+..+|.+..-+.++
T Consensus 356 ~~--------~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 356 KL--------RP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hc--------CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 86 33 357788999999999999999854444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-09 Score=91.33 Aligned_cols=300 Identities=16% Similarity=0.061 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
...-|..-...|+|.+|.....+.-+. .+.-..++..-+..-...|+++.+-.++.++-+..++..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~------ 152 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT------ 152 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch------
Confidence 445566667778888888887775554 344455666667788888999999888888876532211
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.......+.+....|+++.|.....++... .+....++.....+|...|++.+...++.+..+.. - . +
T Consensus 153 -l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~-l---~ 220 (400)
T COG3071 153 -LAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-L-L---S 220 (400)
T ss_pred -HHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-C-C---C
Confidence 234667788888889999998888877653 66666777778888999999988887776654320 0 0 1
Q ss_pred ccHHHHHHHHHHH--HHHcccHHHHHH---HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADL--YYRIGKLRESKS---YCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.....-+.+.+.. +...++-..+.. +.+..-...+ ........++.-+...|+.++|.+..+++++
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr---------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR---------NDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh---------cChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1122222222211 111222222222 2222211111 1134555677888899999999999998887
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
..-+. .....+ -...-++...=++..++.++. ++..+..+..+|.++.+.+.|.+|..+|+.
T Consensus 292 ~~~D~--------~L~~~~--~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 292 RQWDP--------RLCRLI--PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred hccCh--------hHHHHH--hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 64332 111111 123456666666666666663 344457899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+++. .++ ...+..+|.++.+.|+..+|.+.+++++.+.
T Consensus 354 Al~~--------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 354 ALKL--------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhc--------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9986 443 4678899999999999999999999999654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-09 Score=95.33 Aligned_cols=427 Identities=15% Similarity=0.054 Sum_probs=264.7
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH--HHHHHHHhcC-------------ChhhH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH--MLAAIYCSLG-------------RFEEA 134 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g-------------~~~~A 134 (584)
..-.+..+|.+|.+.|. +++|.+.|++++.-.-...+ -..+.++|. .-..+...++ +.+-.
T Consensus 247 ~g~Lw~SLAdYYIr~g~-~ekarDvyeeai~~v~tvrD---Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGL-FEKARDVYEEAIQTVMTVRD---FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhheehhh---HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 35567899999999999 99999999999975433321 111111111 1111111111 11222
Q ss_pred HHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 007930 135 VPVLERSIEVVDIGK----GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAH 210 (584)
Q Consensus 135 ~~~~~~al~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 210 (584)
...|+..+...+-.. -..++. .+--.+-.+-...|+..+-+..|.+|+....-... .......+..+|..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~---nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPH---NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCc---cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHH
Confidence 333333333211000 000000 11223344555678888889999988876321111 123456888999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cCCcchH---
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA------NGQENEV--- 281 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~--- 281 (584)
...|+.+.|...|+++.+..-. .-...+.+|...|..-....+++.|+...+.|...-.. .+..+-.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 9999999999999999875322 22345778889999999999999999999887532111 1122222
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 282 ---AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 282 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
..++...+......|-++.....|++.+++ ....+....+.|..+....-++++.+.|++.+.+++=
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidL--------riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-- 543 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--------RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-- 543 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence 344556667777788888888888888887 4566777888999999999999999999999998743
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+...++...|......-+..-..+.|..+|++|++.++.. ..-.++...+.+-..-|-...|+..|+++-...
T Consensus 544 --p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~-----~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 544 --PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE-----HAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 1222333333333333333347899999999999976532 112344455666677788888888888876531
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
++.. ...+-.+|... --...-...|++|++... +..........+..-...|..+.|...
T Consensus 617 -------~~a~---~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp------~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 617 -------KEAQ---RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP------DSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred -------CHHH---HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC------hHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1111 11121222211 112334567888888721 234445677888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhch
Q 007930 515 LEYILKVREEKLGTANP-DIDDEKERLAELLKETGR 549 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~ 549 (584)
|.-+-+++ +| .+.+.+...-..-.+-|+
T Consensus 681 ya~~sq~~-------dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YAHGSQIC-------DPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhcC-------CCcCChHHHHHHHHHHHhcCC
Confidence 98887774 22 223444445555566676
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-11 Score=117.49 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=134.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 007930 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM 417 (584)
Q Consensus 338 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 417 (584)
+....+.+.+-+++...+. .+....++.+||.+....|.+++|...++.++++.|+. ..+..+++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHH
Confidence 3334444444555555443 23457899999999999999999999999999998887 6788899999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
+.+.+++++|+..+++++.. .|..+..++.+|.++.+.|++++|+.+|++++.- +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999984 5667899999999999999999999999999985 8888999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 498 LAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999973
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-08 Score=93.77 Aligned_cols=375 Identities=17% Similarity=0.118 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---hCCCChHH----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA---LGDSDPRV----------AETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
.+|++.+..+...++.+.|+++|+++-.-...+ +.+ +|.. ...|...|...-..|+.+.|+.+|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 458999999999999999999999863221111 111 1211 23455567777778888888888877
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
+-. |+.+-.+.+.+|+.++|-...++. ....+.+.+|+.|...|++.+|+.+|
T Consensus 938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~es-----------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 938 AKD----------------YFSMVRIKCIQGKTDKAARIAEES-----------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred hhh----------------hhhheeeEeeccCchHHHHHHHhc-----------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 644 445555666677777766554431 22335577888888889988888888
Q ss_pred HHHHHH------HHHhhcCCcc------cHHHHHHHHHHHHHHcc-cHHHHHHHHHHH------------------HHHH
Q 007930 306 QKGLTV------FKATRGEDHL------SVASIFIRLADLYYRIG-KLRESKSYCENA------------------LRVC 354 (584)
Q Consensus 306 ~~al~~------~~~~~~~~~~------~~~~~~~~la~~~~~~g-~~~~A~~~~~~a------------------l~~~ 354 (584)
.+|-.. +++..-.+.. ....-....|..|...| ..+.|..+|.++ +++.
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 765443 2221100000 00001112234444444 555555554433 2222
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHHhCC----------------C--CcccHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL------QKAMKLLEDTP----------------G--YHSTIAGI 410 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~----------------~--~~~~~~~~ 410 (584)
.+.. +....+..+..-+..+....+|++|..++ +.|+.++.... + +......+
T Consensus 1071 a~DL---d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1071 AKDL---DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHhc---CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 1111 11122455666778888888899887765 44555543320 1 11234567
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cCCC-----------------------------CCc--------
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRA------SGES-----------------------------KSA-------- 447 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~-----------------------------~~~-------- 447 (584)
+..+|.++.++|.|..|-+-|.+|-+.++. .|+. ..|
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~t 1227 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIET 1227 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHh
Confidence 889999999999999999888876543322 1211 001
Q ss_pred --hHHHHHHHHHHHHH--------hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH----HHHHHHc----CChH
Q 007930 448 --FFGIVLNQMGLACL--------QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL----AATYDAL----GRVE 509 (584)
Q Consensus 448 --~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----a~~~~~~----g~~~ 509 (584)
....++..||..|- ...+|++|...+++|.+-..+....++.. ..+.+| +.+-... --.+
T Consensus 1228 FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~--t~l~~Lq~~~a~vk~~l~~~q~~~e 1305 (1416)
T KOG3617|consen 1228 FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMST--TGLDALQEDLAKVKVQLRKLQIMKE 1305 (1416)
T ss_pred hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01123334444443 23456777766666665554443322211 122222 2211111 1112
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
++..-.+++-.+.++-.-++--.....+..|.+.+....+|..|. ..++.+-...|.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence 333333333333322212222234566777888899999999999 888887766554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-11 Score=98.96 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=110.6
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++.++++..+++++.. .|.....|..+|.++...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56778888888888884 4556789999999999999999999999999999 8888999999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 501 TY-DALGR--VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 501 ~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++ ...|+ +++|...++++++. +|++..++..+|..+...|++++|+ ..++.+++..|.....
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCccH
Confidence 74 67787 59999999999998 8999999999999999999999999 8889888776665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=96.80 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
..++++++++ .|. .+..+|.++...|++++|+.+|++++.+ +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4577888774 222 3567899999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
+++|+..|++++.+ +|....+++++|.++..+|++++|+ ..++.++...|+....-
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHHH
Confidence 99999999999998 8999999999999999999999999 99999998888765543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-07 Score=88.98 Aligned_cols=471 Identities=12% Similarity=0.040 Sum_probs=292.3
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+.+.+++|..++..-++++.|..++++++.+.++ . .-......+.+.++.++.+.+... |...+++.++..+..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-H--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 447788999999997777799999999999998776 1 122234566678899999888877 999999999987552
Q ss_pred cCCchhhhHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 007930 149 KGSDRALAKFSGYMQL-GDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (584)
. ....... +..+ .......+++..|++.++......... .+......+....+.++...+..+++++..+++.
T Consensus 133 ~-~~~w~~~---frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 133 G-HSAWYYA---FRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred C-chhHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 1 1122111 2222 222223389999999999998886532 1122234455555677788888999999999997
Q ss_pred HHHHHh--CCCCCHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHcCCcc------------------------
Q 007930 228 EIHREH--GHSASLEEAADRRLMAL--VYEAKADYESALEHLVLASMVMIANGQEN------------------------ 279 (584)
Q Consensus 228 ~~~~~~--~~~~~~~~a~~~~~l~~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------------------------ 279 (584)
...... .+...+....++..+-. ++...|+++.+...+.+.-..+....+.+
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 766654 11113333344444444 34556777777776665544443322211
Q ss_pred ------------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc---CCcc---------------cHHHHHHH
Q 007930 280 ------------EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG---EDHL---------------SVASIFIR 329 (584)
Q Consensus 280 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~~ 329 (584)
..+-++..-|......+..++|.++++++++..++... ...+ ....++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 11233444566667778888999999999999887661 1100 01234455
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC----Ccc
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG----YHS 405 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~ 405 (584)
++.+..-.+++..|......+.....+.............++..|..+...|+.+.|..+|.+..-....... ...
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777788899999999999888876553111123345677888999999999999999999855533222111 222
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH-H
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-SAFFGIVLNQMGLACL--QLYRINEATELFEEARGVL-E 481 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~-~ 481 (584)
....+..++..++...+.-.....-+.+.++......... ......++..+-..+. ..-...++...+.++++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 2334445677777766654442222333333222221111 1122222222221221 2234458999999999988 4
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH---HHHHHHHHHHHhchHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD---EKERLAELLKETGRARNRK 554 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 554 (584)
.... ..-...++..++..+. .|+..+.......+..+.++. ++..+..+ +-.-++..+...|+.++|.
T Consensus 527 ~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 527 KLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred hhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4332 3344445666777666 899999888888888877664 12233333 3335677788999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-09 Score=86.74 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=166.3
Q ss_pred HhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 007930 126 CSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205 (584)
Q Consensus 126 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 205 (584)
.+..+|.+|++++..-.+..++ .. ..+..+|.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-----~r----AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-----SR----AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-----ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 5566788888877665443211 11 34888999999999999999999998777 7888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID 285 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 285 (584)
.+..++..+.+..|+......... ......++..-+-+....+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~--------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN--------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 899999999999998887665432 1122234555566677778877777666542 123556778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC------
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP------ 359 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 359 (584)
.+.|.+.++.|+++.|.+-|+.+++. ....+..-++++.++++.|+++.|+++..+.++...+..+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 4455566788999999999999999999998876543211
Q ss_pred ---CCC-----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 360 ---ATA-----------PEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 360 ---~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
+.+ ......+++..+-+++..|+++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 000 12345567777888999999988877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-10 Score=111.10 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+...+...+++++|+..++.+++. +|.....++.+|.++...+++.++... .++...+...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---- 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---- 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----
Confidence 55888888888999999999999988887 788888999999999888887777666 5555544332
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
++ .+++++...+. +.+..-.+++.+|.||-.+|+.++|...++++++.
T Consensus 98 ------------------~~-~~ve~~~~~i~------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------- 145 (906)
T PRK14720 98 ------------------KW-AIVEHICDKIL------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------- 145 (906)
T ss_pred ------------------ch-hHHHHHHHHHH------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Confidence 22 22233322211 23334447888999999999999999999999988
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
+|..+.+++++|..|... ++++|+.++.+++...
T Consensus 146 -D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 146 -DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred -CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 688899999999999988 9999999999988764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=115.20 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=139.2
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMA 249 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~ 249 (584)
..+....+...+-+++...+. .|....++..||.+....|.+++|..+++.++++.|.+. .+...++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--------~a~~~~a 127 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--------EAFILML 127 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--------HHHHHHH
Confidence 334455555556666666555 477789999999999999999999999999999887654 4589999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.++.+.+++++|+..+++++.. .|+....++.+|.++...|++++|+..|++++.. +|....++..
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 9999999999999999998874 8888999999999999999999999999999984 7888999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|.++...|+.++|...|+++++...
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999873
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-10 Score=111.26 Aligned_cols=254 Identities=14% Similarity=0.053 Sum_probs=182.5
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 007930 61 DESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLER 140 (584)
Q Consensus 61 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 140 (584)
.....-+|....++..+...+...++ +++|+..++.+++. +|+....++.+|.++++.+++.++... .
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~---------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~ 88 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKE---------HKKSISALYISGILSLSRRPLNDSNLL--N 88 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHh---------CCcceehHHHHHHHHHhhcchhhhhhh--h
Confidence 34455678889999999999999999 99999999988875 666788999999999999999988877 6
Q ss_pred HHHHHHhccCCchhhhH----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 007930 141 SIEVVDIGKGSDRALAK----------FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAH 210 (584)
Q Consensus 141 al~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 210 (584)
++..........-.... -.+++.+|.||-.+|++++|...|++++++ +|..+.++.++|..|
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSY 160 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHH
Confidence 66655332211000000 135889999999999999999999999999 789999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
... ++++|+.++.+++...-..... ...-..|.. .+.....+++.=....++ .............+.-+=.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~i~~kq~--~~~~e~W~k--~~~~~~~d~d~f~~i~~k----i~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRFIKKKQY--VGIEEIWSK--LVHYNSDDFDFFLRIERK----VLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHHHhhhcc--hHHHHHHHH--HHhcCcccchHHHHHHHH----HHhhhccchhHHHHHHHHH
Confidence 999 9999999999999875543321 111111111 112222222222222222 1222123445566666778
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
.|...++|++++.+++.+++. .+....+...++.+|. +.|.. ...+++.+++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 889999999999999999998 6778888999999988 45544 56666666664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-08 Score=84.93 Aligned_cols=271 Identities=14% Similarity=-0.001 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
..+....+.|.+.++.|+++.|++-|+.+++...-.+ ..-++++.+++..|+++.|+++..+.+..-. .+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~--r~ 211 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGI--RQ 211 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh--hc
Confidence 4566778888889999999999999999988654322 2357788899999999999988876654321 11
Q ss_pred cc-------------------------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 278 EN-------------------------EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 278 ~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
+| ....+++..+.++++.|+++.|.+.+...--.. .+...+.++.+++.
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------E~elDPvTLHN~Al 285 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------EEELDPVTLHNQAL 285 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc------cccCCchhhhHHHH
Confidence 11 124455666777888888887766554321110 12234456666665
Q ss_pred HHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-cccHHHHH
Q 007930 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-HSTIAGIE 411 (584)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~ 411 (584)
.-. .+++.+...-+.-.+.+.. .-..++.++-.+|++..-++.|...+. +.... ...+...+
T Consensus 286 ~n~-~~~p~~g~~KLqFLL~~nP---------fP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yl 348 (459)
T KOG4340|consen 286 MNM-DARPTEGFEKLQFLLQQNP---------FPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYL 348 (459)
T ss_pred hcc-cCCccccHHHHHHHHhcCC---------CChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHH
Confidence 443 3455555555555554421 123566677777887766666555443 22111 11112222
Q ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHHHHh-----hCCHHHHHHHHHHHHHHHHHHh
Q 007930 412 AQMGVML-YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM-GLACLQ-----LYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 412 ~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~-----~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+++-..+ ...-..++|.+-+......+. .-+..+ ..+... ......|++-|+++++++
T Consensus 349 y~LLdaLIt~qT~pEea~KKL~~La~~l~-----------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---- 413 (459)
T KOG4340|consen 349 YDLLDALITCQTAPEEAFKKLDGLAGMLT-----------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---- 413 (459)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----
Confidence 2333322 233455666555544333211 111111 111111 122345666677776663
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
..++...+.+|....++..+.+.|+..++.+.
T Consensus 414 -------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 414 -------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred -------HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 34677889999999999999999999998764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-08 Score=81.80 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=139.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
+.++-+++....+.......-.++...++-.+..+....|+.+-|..++++.... .|....+...-|..+..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHH
Confidence 3444455554444333332234555666677777777888888888888776555 35555666667777888
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 416 (584)
.|++++|+++|+..++-. |....++-..--+...+|+.-+|++.+..-++.+... ..+|..++.
T Consensus 99 ~~~~~~A~e~y~~lL~dd---------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLae 162 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD---------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELAE 162 (289)
T ss_pred hhchhhHHHHHHHHhccC---------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHHH
Confidence 888888888888776542 2223344455556667787778888888777777665 567778888
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
+|...|+|++|.-++++.+-+ .|.....+..+|.+++-+| +++-|.++|.+++++ .+....
T Consensus 163 iY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~r 226 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLR 226 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHH
Confidence 888888888888888888763 4555667777777777665 566788888888887 555555
Q ss_pred HHHHHHHHH
Q 007930 494 VYSNLAATY 502 (584)
Q Consensus 494 ~~~~la~~~ 502 (584)
+++.+-.+.
T Consensus 227 al~GI~lc~ 235 (289)
T KOG3060|consen 227 ALFGIYLCG 235 (289)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-09 Score=98.41 Aligned_cols=251 Identities=17% Similarity=0.131 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHhhcC----------CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhH
Q 007930 88 PNKALDYAIRASKSFERFSG----------SGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAK 157 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (584)
.+++..-.+.++..++.... ...-|.....-..++..+...|-...|+..|++.-
T Consensus 361 veR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------------- 425 (777)
T KOG1128|consen 361 VERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------- 425 (777)
T ss_pred hhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------
Confidence 56666666666554443211 11123445566689999999999999999998742
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
.+-....||...|+..+|..+..+-++. +..+..|..+|.+... -.+|+++.++.....
T Consensus 426 --mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~s--- 484 (777)
T KOG1128|consen 426 --MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHD-------PSLYEKAWELSNYIS--- 484 (777)
T ss_pred --HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccC-------hHHHHHHHHHhhhhh---
Confidence 3666788999999999998887766652 3445566666665554 455556655554332
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
+.+...+|......++|.++.++++.++.+ .+.....|+.+|.+..+.+++..|...|..++.+
T Consensus 485 ----arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------ 548 (777)
T KOG1128|consen 485 ----ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------ 548 (777)
T ss_pred ----HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence 234566677777789999999999998875 7888899999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.|+...++++++..|...|+-.+|...+.++++...+ ...+|.|...+..+.|.+++|++.+.+.+.+.
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999987533 24677788888899999999999999998887
Q ss_pred HhCC
Q 007930 398 EDTP 401 (584)
Q Consensus 398 ~~~~ 401 (584)
....
T Consensus 618 ~~~~ 621 (777)
T KOG1128|consen 618 KKYK 621 (777)
T ss_pred hhcc
Confidence 6654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-10 Score=92.07 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=106.8
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.++.++++..++++++..++. ...+..+|.+|...|++++|+..|++++.+ .+....++..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 567788899999999887776 678899999999999999999999999996 34457889999997
Q ss_pred H-HhhCC--HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 460 C-LQLYR--INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 460 ~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+ ...|+ +++|...++++++. +|....++..+|.++...|++++|+.+|++++++
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 67777 59999999999999 8999999999999999999999999999999997
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-08 Score=93.14 Aligned_cols=337 Identities=15% Similarity=0.111 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH--------HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 007930 116 MSLHMLAAIYCSLGRFEEAVPVLE--------RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 187 (584)
..|.+++....+..+.+-|.-++- +|+...... ++.. -...+.....+|..++|...|+++-..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~--~~e~------eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN--GEED------EAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC--Ccch------hhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677777777766666655442 222222111 1111 123445566778888888888776443
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 188 QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
-.|-..|...|.+++|.++.+.- +....-..|++.+..+...++.+.|+++|++
T Consensus 830 ----------------DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 830 ----------------DLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred ----------------HHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 23455677888888887765432 2223334588899999999999999999987
Q ss_pred HH----HHHHHcCCcch----------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 268 AS----MVMIANGQENE----------VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 268 a~----~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+- ++.+-..+.|. ....|...|..+...|+.+.|+.+|..|-+.+. +..+
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs----------------~VrI 947 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS----------------MVRI 947 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh----------------heee
Confidence 52 22221112221 124566778888888888888888887765432 2223
Q ss_pred HHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHhCCCCcccH
Q 007930 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM------KLLEDTPGYHSTI 407 (584)
Q Consensus 334 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~------~~~~~~~~~~~~~ 407 (584)
...+|+.++|-...++.-. ..+.+.+|..|...|++.+|+.+|.+|. .++.++ +-...+
T Consensus 948 ~C~qGk~~kAa~iA~esgd--------------~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGD--------------KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhccc--------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 3333444433333222111 1233344444444444444444443322 222221 100000
Q ss_pred H---------------HHH-------HHHHHHHHHhccHHHHHHHHHH-----HHHHH-HHcCCCCCchHHHHHHHHHHH
Q 007930 408 A---------------GIE-------AQMGVMLYVVGRYGEARSSFES-----AVVKL-RASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 408 ~---------------~~~-------~~l~~~~~~~g~~~~A~~~~~~-----a~~~~-~~~~~~~~~~~~~~~~~l~~~ 459 (584)
+ ..| ..-..+|.+.|.+.+|+++.=+ ++++. +.+.... .+..+..-+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s---Dp~ll~RcadF 1089 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS---DPKLLRRCADF 1089 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC---CHHHHHHHHHH
Confidence 0 000 0112344555555555554221 23332 2333323 24677788889
Q ss_pred HHhhCCHHHHHHHHHH------HHHHHHHHh-----------CC------CCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 007930 460 CLQLYRINEATELFEE------ARGVLEQEC-----------GS------CHLDTLGVYSNLAATYDALGRVEDAIEILE 516 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~------a~~~~~~~~-----------~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 516 (584)
+....+|++|..++-. |+.++.... .+ +......++..+|.++.++|.|..|-+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999999999887644 444443211 11 112345688999999999999999999998
Q ss_pred HHHH
Q 007930 517 YILK 520 (584)
Q Consensus 517 ~a~~ 520 (584)
+|=.
T Consensus 1170 QAGd 1173 (1416)
T KOG3617|consen 1170 QAGD 1173 (1416)
T ss_pred hhhh
Confidence 7743
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-09 Score=85.06 Aligned_cols=195 Identities=19% Similarity=0.148 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 339 KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 339 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+.++-+++....+..... +...++....+-.+..+....|+.+-|..++++....++.. ..+...-|..+
T Consensus 27 nseevv~l~~~~~~~~k~---~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKS---GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhh---cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHHH
Confidence 445555555555554433 11223344566666677777788888888887766655443 23334567777
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+++|+..++ .+|....++...-.+...+|+.-+|++.+...++. .+...++|..+
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eL 160 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHEL 160 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHH
Confidence 888888888888888776 34444555555556667778888888888888877 56667888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH---HHHHHHHHHHhhhhhh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN---RKGKSLENLLDSNAYR 568 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~l~~~~~~~~~~ 568 (584)
+.+|...|+|++|.-++++.+-+ .|.+.....++|+++.-+|..+. |. ++++.+++.++.+
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~~ 224 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPKN 224 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChHh
Confidence 88888888888888888888877 78888888888888887775433 33 7777788777743
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=89.04 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.++..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------ 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------ 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34577889999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+++..++++|.++...|+.+.|. +.++.++....
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~~ 134 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRICG 134 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhc
Confidence 8999999999999999999999999 88998886653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-10 Score=86.72 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.....+.+|..+...|++++|...|+-...+ .+.....|++||.++..+|++++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------- 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------- 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3556678999999999999999999998885 5567899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
+|+.+..++++|.|+...|+.+.|.+.|+.++..+. .+|......
T Consensus 99 -~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~ 143 (157)
T PRK15363 99 -KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILR 143 (157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHH
Confidence 888889999999999999999999999999999863 356554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=89.86 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=141.9
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..|....+ .+++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..+.++.....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p- 131 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP- 131 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-
Confidence 46666666 88999999999999999888886654 566667777799999999999999999999998753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
.....++.+|.+|.+.|++++|...|.+++++.+.. ..+..++|..+.-.|+++.|..++..+..
T Consensus 132 --------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 132 --------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred --------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999998776 46778999999999999999999999887
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.+.....+..+++.+....|++++|.....+-
T Consensus 197 --------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 --------SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred --------CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 23334678889999999999999998776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=104.99 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.....++..+...|-...|+..+++. ..+.....||...|+..+|.....+-++ .+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~ 455 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELE---------KDP 455 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCC
Confidence 34567889999999999999998863 3456778899999999999888777655 245
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
.+..|..+|.+..... +|+++.++.... .+.+...+|......++|.++.++++.++++.+-.
T Consensus 456 d~~lyc~LGDv~~d~s-------~yEkawElsn~~--------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-- 518 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPS-------LYEKAWELSNYI--------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-- 518 (777)
T ss_pred cchhHHHhhhhccChH-------HHHHHHHHhhhh--------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--
Confidence 5566666666655544 455555554321 23455667777777899999999999999886655
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+|+.+|.+..+.++++.|..+|..++.+ .|....+|++++..|...|+..+|...+++|++.
T Consensus 519 -----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--- 582 (777)
T KOG1128|consen 519 -----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--- 582 (777)
T ss_pred -----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---
Confidence 568889999999999999999999999984 5567899999999999999999999999999997
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+.....++.|.-.+....|.+++|++.|.+.+.+.+....
T Consensus 583 -----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 583 -----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred -----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 5566678889999999999999999999999998665443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=96.89 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..-|.-+.+.++|.+|+..|.+|+.+ .|..+..|.+.+.+|.++|+++.|++-++.++.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 455567788889999999999999999995 5556789999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+|....+|..||.+|..+|++++|++.|++++++ +|++.....+|..+-..++...
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999 8998888888888877777665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=83.65 Aligned_cols=77 Identities=29% Similarity=0.379 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++..+.++.++|.++..+|++++|+++++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 456889999999999999999999999999999 66667777888999999999999999999999999999998653
|
... |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=91.35 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
..+ .+++..+...|+-+.+..+..++....+.. ...+..+|......|++.+|+..+.++... .
T Consensus 67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~ 130 (257)
T COG5010 67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-------RELLAAQGKNQIRNGNFGEAVSVLRKAARL--------A 130 (257)
T ss_pred HHH-HHHHHHHHhcccccchHHHHhhhhccCccc-------HHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------C
Confidence 445 788888999999888888877765443332 345555899999999999999999999984 4
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
|....++..+|.+|.+.|++++|..-|.+++++ .+....+..++|..|.-.|+++.|..++..+...
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----- 197 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----- 197 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-----
Confidence 456789999999999999999999999999999 6777789999999999999999999999999885
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
-+....+..+|+.+...+|++.+|+.
T Consensus 198 ---~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 198 ---PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ---CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 45578889999999999999999983
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=88.93 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
++........+|..+...|++++|...+++++.. +|....++..+|.++...|++++|..++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4445678899999999999999999999999998 7888899999999999999999999999999997
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.....++.+|.++...|++++|. ..++.+++..|+...
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPE 120 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccch
Confidence 7889999999999999999999999 888999988877655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=88.27 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
.+++++...+.. ......+|..+...|++++|...+++++.. .+....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555554433 566778999999999999999999999885 33456889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|..++++++.+ +|.....++.+|.++...|++++|+..|++++++
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999998 7888899999999999999999999999999998
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=80.81 Aligned_cols=77 Identities=30% Similarity=0.556 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 5555666778899999999999999999999999999999864
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=88.87 Aligned_cols=118 Identities=16% Similarity=0.051 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+.++..+|.++...|++++|+..|++++.+.. .+.....++.++|.++...|++++|+.++++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 467788999999999999999999999998632 22334678999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 487 CHLDTLGVYSNLAATYD-------ALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
+|.....+.++|.++. ..|++++|...+.+++..+++.++.+++....+.
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ 158 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 6776777778887777 8999999999999999999999887765554433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-06 Score=81.55 Aligned_cols=433 Identities=13% Similarity=0.052 Sum_probs=266.4
Q ss_pred hhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 189 (584)
....+.+...+|.+++ ...+++.|..++++++.+... ..-....+.+.+.++.++...+... |...+++.++..+
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 3456788889999988 689999999999999998865 3333344566777899999988887 9999999999876
Q ss_pred HHhCCCChHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 190 EALGDSDPRVAETCRYL-AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 190 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
.. .+.....++..+ ...+...+++..|++.++.........++ ......+....+.+....+..+++++.++++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d--~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD--PAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 112222233333 33333347999999999999998875553 3344445556677777888889999999988
Q ss_pred HHHHHHc--C--CcchHHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHhhcCC-------c---------------
Q 007930 269 SMVMIAN--G--QENEVAAIDVSIGN--IYMSLCRFDEAIFSYQKGLTVFKATRGED-------H--------------- 320 (584)
Q Consensus 269 ~~~~~~~--~--~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~--------------- 320 (584)
....... . .......++..+-. ++...|++..+...+++.-+......... +
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 6665543 1 12333334444433 44577887788777666555544432210 0
Q ss_pred --c----------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC-CCCC--h--------------HHHHHHHH
Q 007930 321 --L----------SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA-PATA--P--------------EEIANGLT 371 (584)
Q Consensus 321 --~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~--~--------------~~~~~~~~ 371 (584)
+ ..+.++..-|......+..++|.++++++++..++.. ..+. . .....+..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 0 0122333445566667777899999999999877643 0000 0 01123344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc---CCCCC
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGY--HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS---GESKS 446 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~ 446 (584)
.++.+..-.+++..|....+.+.......+.. ......+++..|..+...|+.+.|..+|.+..-..... .....
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 56677778899999999999888877665331 23345677788999999999999999999555333222 11123
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG-SCHLDTLGVYSNLAATYD--ALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~~ 523 (584)
+....+..++..++...+.-.....-+.+.++..+.... ..+.....++..+-.++. ..-...++...+.++++..-
T Consensus 446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~ 525 (608)
T PF10345_consen 446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN 525 (608)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence 334555666777777665544322222333332211111 111222222222222222 12234589999999999872
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+..+ .+--..-++..++..++ .|+..+..
T Consensus 526 ~~~~-n~~l~~~~L~lm~~~lf-~~~~~e~~ 554 (608)
T PF10345_consen 526 NKLG-NSQLLAILLNLMGHRLF-EGDVGEQA 554 (608)
T ss_pred Hhhc-cchHHHHHHHHHHHHHH-cCCHHHHH
Confidence 2222 12333445666666666 77777766
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-10 Score=97.65 Aligned_cols=262 Identities=19% Similarity=0.108 Sum_probs=162.7
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.-++..|+|..++.-++. ...+..........+.+++..+|+++..+.-... . .+....+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~-~~~~l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------S-SSPELQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------T-SSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------C-CChhHHHHHH
Confidence 345667888888865541 1123445566677788899999988765533321 1 1222334455
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++..+...++.+.++.-+++. .. ..............|.++...|++++|++.+.+. + . ..
T Consensus 72 la~y~~~~~~~e~~l~~l~~~---~~----~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~-~---lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKEL---LA----DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------G-S---LE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHC---CC----TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------T-C---HH
T ss_pred HHHHHhCccchHHHHHHHHHH---HH----hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------C-c---cc
Confidence 555554434444444333222 11 1111112234556677888889999998887653 1 1 23
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHhCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY--RINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+......++...++++.|.+.++.+.++ . .+...+....+++....| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----D----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----S----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----C----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4445678899999999998888775442 2 222222333333444444 688898888885443
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.+....++..++.++..+|++++|...+++++.. +|.+++++.+++.+...+|+..++...++..+...+|+
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3456678899999999999999999999998875 78888999999999999999977666888888877776
Q ss_pred hhHH
Q 007930 568 RVKK 571 (584)
Q Consensus 568 ~~~~ 571 (584)
.+..
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-08 Score=103.11 Aligned_cols=432 Identities=14% Similarity=0.096 Sum_probs=280.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhH
Q 007930 78 ARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAK 157 (584)
Q Consensus 78 a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (584)
+......++ +.+|...=+.++++.+... +...|+....+..++..++......+|+.+-.+.+.......+..++...
T Consensus 672 ~v~~~~t~~-~~~a~~~~qk~~d~~Erll-~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~ 749 (1236)
T KOG1839|consen 672 AVVLYHTED-FNQAAIQQQKVLDINERLL-GLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTA 749 (1236)
T ss_pred ceEecCccc-cchhhhhhHhHHHHHHHHh-ccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCcccc
Confidence 444556666 6778888888998888877 56678889888888888888888999999999999988766666555443
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHh-
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ---AMQFDEAENLCKKILEIHREH- 233 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~- 233 (584)
..+.+.. ....+--+-+.+....+++-..+..+.++-..+.. ..+...+.. ..+......-.-++.+.....
T Consensus 750 -a~~~~v~--l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~ 825 (1236)
T KOG1839|consen 750 -ATYINVA--LMELGVGEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDA 825 (1236)
T ss_pred -chhhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhh
Confidence 1111111 12222226677777777777766666555444444 333333222 222222222111121111000
Q ss_pred --CCC--CCHHHH------HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhH--
Q 007930 234 --GHS--ASLEEA------ADRRLMALVYE-AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE-- 300 (584)
Q Consensus 234 --~~~--~~~~~a------~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-- 300 (584)
+.+ +....+ ..+..-..... ..+.+.......... ....|...-
T Consensus 826 ~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i-----------------------~~~~~~~~~~~ 882 (1236)
T KOG1839|consen 826 AAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETI-----------------------LLKNGKSKIAV 882 (1236)
T ss_pred ccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHH-----------------------hhhcccchhHH
Confidence 000 000000 00000000000 000111111111111 111111000
Q ss_pred -HHHHHHHHHHHHHHhhc-----------------------CCcc--cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 301 -AIFSYQKGLTVFKATRG-----------------------EDHL--SVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 301 -A~~~~~~al~~~~~~~~-----------------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
....+..-+....+... ...| ..+.-....+......|.+.+|.+ ..+++...
T Consensus 883 ~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~ 961 (1236)
T KOG1839|consen 883 EKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLL 961 (1236)
T ss_pred HHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHH
Confidence 00001111110000000 0012 223334455666777888888888 77777777
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
...+ +..++..+..+..++.++...|+.++|+..-.++.-+.....+ +++.....+.+++...+..++...|...+.+
T Consensus 962 ~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen 962 NNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred HHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHH
Confidence 6543 6678899999999999999999999999999999988887777 5677788888999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
+..+..-..++.+|..+.+..+++.++...++++.|+.+.+.|+...+.+.++..-..+..+..+++++..++++..|..
T Consensus 1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99987766555677778888999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
..+....++...+|++|+.+..+...+
T Consensus 1121 ~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1121 HEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred HHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 999999999999999998876654433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-10 Score=93.23 Aligned_cols=122 Identities=22% Similarity=0.244 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
..+..+-.-|.-+.+.++|.+|+..|.+||++.+.. +..|.+.+.+|.++|.++.|++.++.++.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 346667778888999999999999999999998877 678889999999999999999999999995
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
++....+|..||.+|..+|++++|++.|++++++ +|+......+|..+-..++...
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6678899999999999999999999999999999 8888888888888877777666
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-08 Score=86.76 Aligned_cols=183 Identities=18% Similarity=0.254 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...++..|..++..|+|.+|+..|++++...+. ++... .+.+.+|.+++..|++++|+..+++.+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----s~~a~-~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP----- 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----SPYAP-QAQLMLAYAYYKQGDYEEAIAAYERFIKLYP----- 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----STTHH-HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----ChHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----
Confidence 567788999999999999999999999988633 33222 5688999999999999999999999998864
Q ss_pred CChHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAM-----------QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALE 263 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 263 (584)
+++....+++.+|.+++... ...+|+..|+..++..|+..-. .+|..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~ 131 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK 131 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence 36788899999999876653 2347788888888777755421 11211
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES 343 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 343 (584)
.+... ....+.--..+|..|.+.|.+..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l---------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAEL---------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 11111 112233346688999999999999999999988743 3456667888999999999988854
Q ss_pred H
Q 007930 344 K 344 (584)
Q Consensus 344 ~ 344 (584)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=82.40 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
...++..|..++..|++.+|+..|++.+..+. ..+....+.+.+|.++...|++++|+..+++.+.....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 45567778888888888888888888877642 35677788888888888888888888888888887644
Q ss_pred ChHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALN-----------EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
++....+++.+|.++..+. ...+|+..|+..+...|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 3456677777777765543 34477777777777776651 11223333
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+..+.+. .+.--..+|..|...|.+..|+..++.+++.+ |+.+....++..++.+|..+|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3322221 23344567888999999999999999988873 3455566788889999999998885
Q ss_pred HH
Q 007930 511 AI 512 (584)
Q Consensus 511 A~ 512 (584)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-07 Score=74.58 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
...+..|..-+..|....+|++|...+.+|.+..+........+..+...+.+......+.++..+++++..++.+.+
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-- 105 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-- 105 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence 334555667777888889999999999999988887777778888999999999999999999999999999999887
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.|..+..-...+--....-++++|+.+|++++.+.+. ++........+...+.++....++++|-..+.+-.....
T Consensus 106 -spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 -SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred -CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 4555554445555556678899999999999999877 444455567788889999999999999888887666554
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.. .........+.....+|+...+|..|..+++...++ +....+....++.+|-..| ..|+.++....+.
T Consensus 182 ~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 KC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 43 223333444555566777788999999999887664 2222333455666665544 5577777665543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-06 Score=81.99 Aligned_cols=343 Identities=12% Similarity=-0.002 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
++...+.+...+.-+...|. +.+|+.+.-.|-+ ....+..+...+.-.+..++..--. ..++..+
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d----------~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP 407 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD----------PEMAADLLEQLEWQLFNGSELSLLL----AWLKALP 407 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC----------HHHHHHHHHhhhhhhhcccchHHHH----HHHHhCC
Confidence 44445666666666667777 8888876554432 1122333444455555555543222 2222221
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL-GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
...-..+| ......++......++.+|.....++........ +......+......|.+....|++++|+++.+.
T Consensus 408 ~~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 408 AELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred HHHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111122 2245567778888999999998888766533210 001122345555667888999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
++...+.... ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+....+.++..+|+...|. -
T Consensus 484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~ 558 (894)
T COG2909 484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--Q 558 (894)
T ss_pred HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--H
Confidence 9998877653 3345678889999999999999999999999999988888888888889999999999433332 2
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 306 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
.++............+.........+.++...-+++.+..-....+++.... ...+....-.++.|+.++...|+.++
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 2232222222222233333333334444444444777777777777765442 22222333344689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
|...+.+...............+.++.........+|+..+|.....+..
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999888776533333445555555566678899999988877743
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-08 Score=83.25 Aligned_cols=188 Identities=9% Similarity=0.037 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...++..|..++..|+|++|+..|++++...+ ..+.. ..+.+.+|.+++..+++++|+..+++.++.. +
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a-~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYS-QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 44567789999999999999999999988753 33322 2558899999999999999999999999985 4
Q ss_pred CChHHHHHHHHHHHHHHHhC---------------C---HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007930 195 SDPRVAETCRYLAEAHIQAM---------------Q---FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA 256 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g 256 (584)
++|....+++.+|.++...+ + ..+|+..+++.++..|+.. ....+...+..+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-----ya~~A~~rl~~l----- 170 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-----YTTDATKRLVFL----- 170 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-----hHHHHHHHHHHH-----
Confidence 47888999999998865543 1 2467777888887776543 111111111111
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
....+.--..+|..|.+.|.|..|+.-++.+++.+. +.+....++..++..|..
T Consensus 171 ---------------------~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 171 ---------------------KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQ 224 (243)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHH
Confidence 112223335788899999999999999999888753 356788899999999999
Q ss_pred cccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCEN 349 (584)
Q Consensus 337 ~g~~~~A~~~~~~ 349 (584)
.|..++|......
T Consensus 225 lg~~~~a~~~~~~ 237 (243)
T PRK10866 225 LQLNAQADKVAKI 237 (243)
T ss_pred cCChHHHHHHHHH
Confidence 9999998776543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=94.35 Aligned_cols=254 Identities=19% Similarity=0.129 Sum_probs=158.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
.-++..|+|..++.-++ +. . . ...........+.+.+..+|+++..+.-+.. . ..+. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~--~--~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~-~~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK--S--F--SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------S-SSPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH--T--S--TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------T-SSCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhh--cc--C--C--CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------C-CChh-HHHHHH
Confidence 34567899988886555 11 1 1 2233445577788899999998876654432 1 1222 223344
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++..+...++.+.++..++..+ ...............|.++...|++++|++.+.+. ...
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~l 131 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELL------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSL 131 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCC------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCH
T ss_pred HHHHHhCccchHHHHHHHHHHH------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Ccc
Confidence 5554444334444433332211 11112234456667788888899999998877653 113
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCC
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
+.......++..+++++.|.+.++.+.+. .+.. .-+....+++....| ++.+|...|++..+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 55566778999999999999888775433 2222 222223344444555 588999999886542
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV-EDAIEILEYILKV 521 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 521 (584)
.+....+++.++.++..+|++++|...+++++.. +|..+.++.+++.+...+|+. +.+.+++.+....
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 1223577899999999999999999999999876 788889999999999999999 5566666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-07 Score=74.00 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=170.8
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
+....+..|..-+..|....+|++|..++.++.+..+. .......+..+...+.+......+.++..+++++..++.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455666777788888899999999999999988776 445667788899999999999999999999999999999
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
+. |.....+.++..-|. .....+.++|+.+|++++.++...+.. ..-...+...++++....++++|-..+.+-..
T Consensus 103 E~-GspdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~--~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 103 EC-GSPDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRD--QMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred Hh-CCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchH--HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 88 655555555544343 456678999999999999988764322 22345677788999999999999999988777
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+..+... .+.....+.....+|.-..++..|..+++...++ .+...++...++.+|-..|. .|+.++..
T Consensus 179 ~~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 179 AADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 7666544 4455555666667777788999999999998775 33446777888888887764 66777766
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-09 Score=86.62 Aligned_cols=121 Identities=19% Similarity=0.077 Sum_probs=96.4
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......++..+|.++...|++++|+..|++++.+... +.....++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456788899999999999999999999999988422 3345678999999999999999999999999988665
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.......++.++..+|..+...|++++|...+++++..++......+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 53334444555666666666999999999999999888776644444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-07 Score=76.46 Aligned_cols=259 Identities=19% Similarity=0.146 Sum_probs=168.8
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
+-++..|+|..++....+.. ..+........+.+.|..+|.+...+.-...+ ......+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~-----------~~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEG-----------KATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHcccccccccccccc-----------cCChHHHHHH
Confidence 34556788877776655431 12244555667788888888876544332221 1122223334
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++.....-++.++-+.-..+-+.... ..........-|.++...|++++|+........+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~-------~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADST-------DGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhc-------cchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence 44444444444433333333222211 1112234445577888999999999887763322 1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
+...-..++.++.+++-|...++++.++-. -.++..||..+... +++.+|.-+|++.-+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------ 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------ 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence 222345677888888888888888877522 24556666666543 4677777777766553
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.+.....+...+.|...+|++++|...++.++.. ++.+++++.|+..+-..+|...++....+..+...+
T Consensus 203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 4455678889999999999999999999999986 788899999999999999999999888888888888
Q ss_pred hhhhHH
Q 007930 566 AYRVKK 571 (584)
Q Consensus 566 ~~~~~~ 571 (584)
|+.+..
T Consensus 273 p~h~~v 278 (299)
T KOG3081|consen 273 PEHPFV 278 (299)
T ss_pred CcchHH
Confidence 876654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=96.55 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+...|..++..|++++|+.+|++++.+ .+....++..+|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 346688899999999999999999985 3445688999999999999999999999999999 888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
...+++.+|.++..+|++++|+..|++++.+ +|....+...++.+...+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 7888888888888866663
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-07 Score=80.56 Aligned_cols=189 Identities=10% Similarity=0.002 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
....++..|..+...|++++|+..|++++... +..+....+...+|.++...+++++|+..+++.++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence 34456778889999999999999999998863 224555667799999999999999999999999999644
Q ss_pred CChHHHHHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 361 TAPEEIANGLTEISAIYEALN---------------E---HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
++....+++.+|.++...+ + ..+|+..|++.++..|+..
T Consensus 102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~--------------------- 158 (243)
T PRK10866 102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ--------------------- 158 (243)
T ss_pred --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------------------
Confidence 4667788888888764443 1 2456677777777666540
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
-..+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++-+ |+.+...+++..++..|
T Consensus 159 ya~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 159 YTTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 012222222222221 23334478888999999999999999988873 45677788999999999
Q ss_pred HHcCChHHHHHHHHH
Q 007930 503 DALGRVEDAIEILEY 517 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~ 517 (584)
..+|..++|......
T Consensus 223 ~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 223 RQLQLNAQADKVAKI 237 (243)
T ss_pred HHcCChHHHHHHHHH
Confidence 999999998876543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-08 Score=80.29 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
....+..++.+|..+...|++++|+.+|++++..... ++....++..+|.++...|++++|+.++++++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3444677889999999999999999999999986332 2224578999999999999999999999999998
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHhCCC
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGR-------VEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+|.....+..+|.++...|+ ++.|+..++++++.+++....+
T Consensus 102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 77788889999999988765 5666666666666666655543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=83.39 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=91.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+..+..++.+|..+...|++++|+.+|++++... ++.+....++..+|.++...|++++|+.++++++.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34457789999999999999999999999999872 223345679999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHhhhhhh
Q 007930 526 LGTANPDIDDEKERLAELLKETGR--------------ARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~l~~~~~~~~~~ 568 (584)
+|....++..+|.++...|+ +++|. ..++.++..+|+.
T Consensus 102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~-~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA-EYWKQAIRLAPNN 153 (172)
T ss_pred ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH-HHHHHHHhhCchh
Confidence 78888999999999999887 45566 6667777777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=88.51 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc-------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA-------FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
....|..|++.|+|..|...|++++..+......+.. ....++.+++.++.++++|.+|+....+++++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 3457899999999999999999999887643222111 23457899999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
.|....+++..|.++..+|+++.|+..|++++++ .|.+..+...|..+..+..++.+...+.+..++.
T Consensus 287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999999999999999999999 8999999999999999999988886688888876
Q ss_pred hhh
Q 007930 564 SNA 566 (584)
Q Consensus 564 ~~~ 566 (584)
.-+
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-08 Score=77.50 Aligned_cols=134 Identities=21% Similarity=0.211 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
...+..+......++ +..+...+++.+.- .+..+....+...+|.+++..|++++|...|++++... +
T Consensus 12 ~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 12 SALYEQALQALQAGD-PAKAEAAAEQLAKD------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 345566666667787 88887777777664 23345567888899999999999999999999998753 2
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (584)
+. .....+.+.++.++...|++++|+..++... +.+....++..+|.++...|++++|+..|++++
T Consensus 80 d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DP-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 22 2222458889999999999999999986621 245566788899999999999999999999874
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=77.32 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.+++.+|..+...|++++|+..|++++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56788999999999999999999999987 23344456789999999999999999999999999862 334
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+....++..+|.++..+|++++|. ..++.+++..|++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPGSSAA 112 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcCChhH
Confidence 556788999999999999999999 9999999888876553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-05 Score=72.88 Aligned_cols=227 Identities=16% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHH------HHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLA------SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
.|..-|.+|....++++|+++|++. +++.+ ..-+..+...-...|.-+...|+++.|+.+|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka--- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA--- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH---
Confidence 3444556666666666666666542 22211 1122333444445566666667777777666555433211
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
...-....++.+|+..++...... .....|-.++.-|...|+++.|.++|.++-..
T Consensus 739 -------------ieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~- 794 (1636)
T KOG3616|consen 739 -------------IEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEADLF- 794 (1636)
T ss_pred -------------HHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhcchh-
Confidence 111222344555554444332221 11234455677777888888888777664221
Q ss_pred HhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH----
Q 007930 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELF---- 473 (584)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---- 473 (584)
..-..+|-+.|+++.|.++-++... +......|...+.-+-..|+|.+|.++|
T Consensus 795 --------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 795 --------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred --------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 1234566677777777666555432 2233455555666666667666666555
Q ss_pred --HHHHHHHHHHhC---------CCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 474 --EEARGVLEQECG---------SCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 474 --~~a~~~~~~~~~---------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+++.++.+..- ..|++ ..++...+|.-|...|+...|...|-++-+.
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 344444443321 11222 3457788899999999999999888777553
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=89.11 Aligned_cols=431 Identities=15% Similarity=0.098 Sum_probs=277.4
Q ss_pred HHHHHHHhcCC------hhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 120 MLAAIYCSLGR------FEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 120 ~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.++.+-...|+ .++|.++..+++.-.....++-+... .+...++......+++.+|...-++++++.+..++
T Consensus 623 ~l~~~is~d~~eS~~~~~~dav~~~~~al~k~~~~~~~~~fnp--~~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~ 700 (1236)
T KOG1839|consen 623 KLVNCISADGRESSKLSLDDAVKYATKALVKLVAVCGPYGFNP--AGFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLG 700 (1236)
T ss_pred HHHHhhccccccccccchHHHHHHHHHHHHHHHhhhcccccCc--cccccCceEecCccccchhhhhhHhHHHHHHHHhc
Confidence 34444444444 34566665555543322222211111 12233367777889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
.+.|+....+..++..++....+.+|+.+-.+.+.+.....+..++..+..+.+....-...| +-++.++..+++.+.
T Consensus 701 ~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~ 778 (1236)
T KOG1839|consen 701 LDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNL 778 (1236)
T ss_pred cccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999997778888889999999999888776655444444433333333222222 555566665555444
Q ss_pred HcCCcchHHHHH-HHHHHHHH---HcCChhHHHHHHHHHHHHHHH--hhcCCccc-------------------------
Q 007930 274 ANGQENEVAAID-VSIGNIYM---SLCRFDEAIFSYQKGLTVFKA--TRGEDHLS------------------------- 322 (584)
Q Consensus 274 ~~~~~~~~~~~~-~~la~~~~---~~g~~~~A~~~~~~al~~~~~--~~~~~~~~------------------------- 322 (584)
..-.......+. ..+..++. ..........-.-++.+...+ ..+...+.
T Consensus 779 r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~ 858 (1236)
T KOG1839|consen 779 RLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNK 858 (1236)
T ss_pred hhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhcccccccc
Confidence 321111111111 11111111 122222222222222211000 00000000
Q ss_pred --HHHHHHHHHHHHHHcccHHHH---HHHHHHHHHHHhcCC-CCC---------------------ChH--HHHHHHHHH
Q 007930 323 --VASIFIRLADLYYRIGKLRES---KSYCENALRVCAKPA-PAT---------------------APE--EIANGLTEI 373 (584)
Q Consensus 323 --~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~~~~-~~~---------------------~~~--~~~~~~~~l 373 (584)
.......+..+....|...-+ ...+..-+....+.. ... ..| ..+.-....
T Consensus 859 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~ 938 (1236)
T KOG1839|consen 859 FTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQ 938 (1236)
T ss_pred ccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhh
Confidence 000101111111122221111 111111111110000 000 001 122333445
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+......|.+.+|.+ .-+++....+..+ .++..+..+..++.++...|++++|+..-.++.-+.+.....+++.....
T Consensus 939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 666667788888888 8888888876666 47788999999999999999999999999999998888877788888899
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.+++...+..++...|...+.++..+..=..++++|..+.+..+++.++...++++.|+.+.+.|......++|+.+-.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+...+..++++....+++..|..
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999998864
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=77.21 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.+++.+|..+...|++++|+..|++++.... .++....+++.+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 4567899999999999999999999987521 12233578899999999999999999999999987 3444
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+....++..+|.++...|++++|..++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555788999999999999999999999999997
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-09 Score=70.46 Aligned_cols=64 Identities=33% Similarity=0.387 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG-RVEDAIEILEYILKV 521 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 521 (584)
+.++..+|.++...|++++|+.+|++++++ +|+...+++++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999 8999999999999999999 799999999999998
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-06 Score=69.44 Aligned_cols=199 Identities=13% Similarity=0.169 Sum_probs=139.2
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
.-.+++++|.++|.++-.++ ....+++.|-..|.++.....+.++..+.+..|...+.
T Consensus 25 gg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN 82 (288)
T ss_pred CCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33457888888887775543 33445666666677776666677777777888777777
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
+|.+. +..+|..+++++++++...+ ....-+.-+..+|.+|..- .++++|+.+|+++-+.+.. .......-.+
T Consensus 83 cykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC 156 (288)
T KOG1586|consen 83 CYKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKC 156 (288)
T ss_pred Hhhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHH
Confidence 77654 99999999999999987765 2233456677899999765 8999999999999998865 2223334466
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+...+..-...++|.+|+..|++.....-++.-.....-..+..-|.+++...+.-.+...+++-.++
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 77778888889999999999998776554432222223334456677777767766665555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-07 Score=74.76 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=97.1
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 373 (584)
..++...+...+++.+... ++.+....+...+|.+++..|++++|...|+.++... .++.....+...+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence 5788888877777766641 2234557888899999999999999999999999863 2344556788899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
+.++...|++++|+..++.. ........+...+|.++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998651 1222335567789999999999999999999874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=92.82 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+...|..++..|++++|+.+|.+++++ .|....++.++|.++..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 456688888999999999999999998 8888999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
...+++++|.++..+|++++|+ ..++.++..+|+....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPGDSRF 106 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHH
Confidence 9999999999999999999999 8899999888776554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-05 Score=72.52 Aligned_cols=225 Identities=17% Similarity=0.212 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH------HHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKG------LTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..|-.-|.+|.+..++++|+++|++. +++.+-.. .......-...|.-+...|+++.|+.+|-++-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 34555677777788888888887753 33332222 2223334445577777888899988888776544321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
........++.+|+..++...... .....|-.++.-|...|+|+.|.++|.++-.
T Consensus 739 -----------------ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 739 -----------------IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred -----------------HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 122334456677766655432221 1123455678899999999999999887533
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH-
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL- 515 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~- 515 (584)
. ..-...|.+.|+++.|.++-+++.. .......|..-+.-+...|++.+|..+|
T Consensus 794 ~----------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 794 F----------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred h----------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 1 2223456778888888776655432 2234445555666666777776666665
Q ss_pred -----HHHHHHHHHH---------hCCCChhH-HHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 516 -----EYILKVREEK---------LGTANPDI-DDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 516 -----~~a~~~~~~~---------~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
.++++++.+. .+..||+. .++...++.-+...|+.++|...+++.
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3455555432 23334443 467788999999999999998666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=69.07 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhhhh
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG-RARNRKGKSLENLLDSNA 566 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~l~~~~~~~~ 566 (584)
.+.++..+|.++...|++++|+.+|++++++ +|+...++.++|.++..+| ++++|+ ..++.++..+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence 3578999999999999999999999999999 8999999999999999999 899999 99999988776
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-06 Score=67.05 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=135.1
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 247 (584)
+.-.+.+++|.+.|.++-.+++ ...++..|-..|.++-+...+.+ +....+.+|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH
Confidence 3344578888888887765543 22333444444444444443333 12223344444
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL-CRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
.+.+|.. ++..+|+..++++++++...|.....+..+..+|.+|..- .++++|+.+|+++-+.+.... .....-.+
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC 156 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKC 156 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHH
Confidence 4555444 4888899999999998888888777788888999999855 999999999999999875432 12333456
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
+...+..-...++|.+|+..|++.....-... --....-..+..-|.++....+.-.+...+++-.++.|...+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~--LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN--LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 77778888889999999999999877653310 011122234455677777777777777777776666666533
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=71.99 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=68.6
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
.+|+++.|+.+++++++.... .+ ....++.+|.+++..|++++|+.++++ .+. .+......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999996321 11 456778899999999999999999999 555 456677888899
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a 518 (584)
.++..+|++++|++.|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-07 Score=81.90 Aligned_cols=123 Identities=17% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
...+.+..+..++..|++++|+..+...+... |+....+...+.++...++.++|.+.+++++...+..
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-- 373 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---------PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-- 373 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--
Confidence 33444455555555555555555555533332 1223344444555555555555555555555544332
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
.....++|.++.+.|++.+|+..++..+. ..+..+..|..|++.|..+|+..+|
T Consensus 374 -----~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 374 -----PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred -----cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 22334455555555555555555554443 2233344555555555555444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00013 Score=71.85 Aligned_cols=339 Identities=11% Similarity=-0.041 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
.....+..-+..+...|...+|+++.-.| .++......+...+.-....++..--..+.+..-.- .
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~----~ 410 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE----L 410 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH----H
Confidence 33445555555556666666666554432 222222233444444444444433222221111000 0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH-SASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
-..........++......++.+|..+..++....+.... ......+...-..|.+....|++++|+++.+.++..
T Consensus 411 ---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 411 ---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred ---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0112234445677788899999999999988776655321 123334555666788889999999999999998775
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH--HHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES--KSYCEN 349 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~ 349 (584)
...... .....++..+|.+..-.|++++|..+..++.++.++.. .......+....+.++..+|+...| ...+..
T Consensus 488 L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 488 LPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred cccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443322 23455678899999999999999999999999877753 1244556666778889999943333 222322
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
.-...... ...+.....+. +.++...-+++.+..-....++...............+..++.++...|++++|..
T Consensus 565 ~~~q~l~q--~~~~~f~~~~r---~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~ 639 (894)
T COG2909 565 IREQHLEQ--KPRHEFLVRIR---AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA 639 (894)
T ss_pred HHHHHhhh--cccchhHHHHH---HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 22221110 11111122233 33333333366666666666666544423333333334589999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
.+.+....+.... .+....+.++.........+|+..+|.....+..
T Consensus 640 ~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 640 QLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 9999988876654 2333334444444555667899999988877743
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=72.80 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999987 6666688999999999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
....++..++.++...|++++|. ..++.++...|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~ 99 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDP 99 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCC
Confidence 66688999999999999999999 77777776554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=70.44 Aligned_cols=101 Identities=30% Similarity=0.305 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|.++..+|++++|+..+++++.- +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 46788999999999999999999999985 4445566789999999999999999999999999875 4
Q ss_pred hh---HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 531 PD---IDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 531 p~---~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
|+ .......++.++...|+.++|....+..+.+.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 55 77777889999999999999996666555433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=82.45 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=94.8
Q ss_pred HHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 451 IVLNQMGLAC-LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 451 ~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...+..+..+ ...|+|++|+..|++.++. .|+.+....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4455566554 5679999999999999998 23344457899999999999999999999999999874 45
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
+|...++++.+|.++..+|++++|+ ..++.++...|++.....+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCHHHHHH
Confidence 7889999999999999999999999 9999999988887765533
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-06 Score=70.32 Aligned_cols=250 Identities=17% Similarity=0.088 Sum_probs=158.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
+-++..|+|..++...++..... ........+.+.|..+|++...+.-...+ .. ....+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~---------~~~e~d~y~~raylAlg~~~~~~~eI~~~--------~~-~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK---------TDVELDVYMYRAYLALGQYQIVISEIKEG--------KA-TPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc---------chhHHHHHHHHHHHHcccccccccccccc--------cC-ChHHHHHH
Confidence 34556788877776554433211 11223556777888888876655443321 11 12223334
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++.....-++.++-+.-..+-+.. ............-|.++...|++++|+........+
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------- 137 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------- 137 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------
Confidence 444444444444433333322221 112333345556678899999999999888773332
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHcCC
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV----GRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
++...--.++.++.+++-|...++++.++..+. ++..||..+... +++..|.-+|++.-+
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~------- 201 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE------- 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------
Confidence 233334567788889999999888888776553 445566666543 345566655555433
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
+.++ ....++.++.++..+|+|++|...++.++.. .+..++++.++-.+-...|...++..-+-.-+.
T Consensus 202 k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 202 KTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 2333 3578899999999999999999999999997 777889999999999999999887765544443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-05 Score=70.23 Aligned_cols=414 Identities=15% Similarity=0.088 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---h
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD---I 147 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~ 147 (584)
.-..+..|..++.... +..|++.....+...+.+. ....+..-...-..+....+-++|+.++.-.-++.. .
T Consensus 100 t~~~yn~aVi~yh~~~-~g~a~~~~~~lv~r~e~le----~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEE-NGSAMQLSSNLVSRTESLE----SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hHHhhhhheeeeeHhh-cchHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456777777888777 7889888877776655443 111222333444555666677777776554333321 0
Q ss_pred -ccC----------Cchhhh----------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 007930 148 -GKG----------SDRALA----------KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206 (584)
Q Consensus 148 -~~~----------~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 206 (584)
..+ ...+.. .......-...+....+..-+..-.+.++.+ ..+...++...
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--------a~~s~~~l~LK 246 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--------AQDSSMALLLK 246 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--------cCCCcHHHHHH
Confidence 000 000000 0001111122223333333333333333222 12345567778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHc--CC----
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASL--EEAADRRLMALVYEAKADYESALEHLVLASM-VMIAN--GQ---- 277 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~--~~---- 277 (584)
+..++..|++.+|.+.+...- +....+....+ .....++++|.+++..|.|.-+..+|.+|++ .+... +-
T Consensus 247 sq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 888999999999998875432 22222211122 2334568999999999999999999999996 33322 11
Q ss_pred -----cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-------------
Q 007930 278 -----ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK------------- 339 (584)
Q Consensus 278 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 339 (584)
......++++.|..|...|+.-.|.++|.++...+. ..+..|..++.++....+
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--------~nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--------RNPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 123467889999999999999999999999999853 345567777766543210
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHhcC----------------CC--------
Q 007930 340 ------------------------------------LRESKSYCENALRVCAKP----------------AP-------- 359 (584)
Q Consensus 340 ------------------------------------~~~A~~~~~~al~~~~~~----------------~~-------- 359 (584)
.+-|.-+++.++-+..+. ..
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 223444555555433110 00
Q ss_pred ---------CC-------ChH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 360 ---------AT-------APE--------EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 360 ---------~~-------~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
++ ..| ....++.+.+.+-...|+.-.|+..-.+.++...- ..++.-+|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~l--------S~~~kfLG 549 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADL--------SKIYKFLG 549 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhh--------hhHHHHHH
Confidence 00 000 12335556677778889999998888887765432 23333344
Q ss_pred -----HHHHHhccHHHHHHHHHHHH------HH------HHH----------cCCCCC--------chHHHHHHHHHHHH
Q 007930 416 -----VMLYVVGRYGEARSSFESAV------VK------LRA----------SGESKS--------AFFGIVLNQMGLAC 460 (584)
Q Consensus 416 -----~~~~~~g~~~~A~~~~~~a~------~~------~~~----------~~~~~~--------~~~~~~~~~l~~~~ 460 (584)
.++..+.+..+|...+.--+ .+ +.. .+.+.+ ......++++|.++
T Consensus 550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 44455677777776654411 00 000 000100 11235688999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
..+|++++|..++..|..+..+. ....+...--.+-..+|+...|...+++.--
T Consensus 630 alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 630 ALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 99999999999999999885321 1122333333344678999999988877643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=70.22 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=67.1
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLD--TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
.+|++++|+.+++++++. .|. ....++.+|.+|.+.|++++|+.++++ ... ++......+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHH
Confidence 368999999999999998 342 556788899999999999999999999 555 5777888889
Q ss_pred HHHHHHHhchHHHHHHHHHHH
Q 007930 540 LAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 540 l~~~~~~~g~~~~A~~~~l~~ 560 (584)
+|.++..+|++++|+ ..++.
T Consensus 64 ~a~~~~~l~~y~eAi-~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAI-KALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHH-HHHHH
T ss_pred HHHHHHHhCCHHHHH-HHHhc
Confidence 999999999999999 55543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=66.32 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 455 QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+|..+...|++++|+..|+++++. +|+...+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8999999999999999999999999999999998
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-06 Score=77.53 Aligned_cols=340 Identities=15% Similarity=0.075 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHH
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL-AKFSGYMQLGDTCSSMGLLDRSVWCYESGLE-IQIEA 191 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~ 191 (584)
...++...+..++..|+|.+|.+.+...--.. ...+...+. .....++++|.+++..|.|.-+..+|.+++. .....
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999876542211 111111111 1112368999999999999999999999996 33222
Q ss_pred hCCC---------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---cHH
Q 007930 192 LGDS---------DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA---DYE 259 (584)
Q Consensus 192 ~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~ 259 (584)
...- .....+++++.|..|...|+.-.|.++|.++...+..++ ..|..++.+..... -.+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhhhhhh
Confidence 1110 123467899999999999999999999999999987765 34777877765421 111
Q ss_pred HHHHHHHHH-H------------HHHHHc-----CCcchHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHH--------
Q 007930 260 SALEHLVLA-S------------MVMIAN-----GQENEVAAIDVSIGNIYMSLCRFDEA-IFSYQKGLTVF-------- 312 (584)
Q Consensus 260 ~A~~~~~~a-~------------~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~-------- 312 (584)
+......+. + -++.+. +....+...-..++.++.+.+-+--- ...+...+...
T Consensus 390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~ 469 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS 469 (696)
T ss_pred hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence 111111100 0 000000 00000011111112222111100000 00000000000
Q ss_pred -------------HHhhcC-------C--------cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChH
Q 007930 313 -------------KATRGE-------D--------HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364 (584)
Q Consensus 313 -------------~~~~~~-------~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 364 (584)
++..|+ . ......++.+++.+-...|+.-.|+....+.+...
T Consensus 470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~---------- 539 (696)
T KOG2471|consen 470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA---------- 539 (696)
T ss_pred CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh----------
Confidence 000000 0 11234456677778888899999988888888764
Q ss_pred HHHHHHHHHHHHH-----HHhcCHHHHHHHHHHHH------H--HHHhCC--------------CC---------cccHH
Q 007930 365 EIANGLTEISAIY-----EALNEHEEALKLLQKAM------K--LLEDTP--------------GY---------HSTIA 408 (584)
Q Consensus 365 ~~~~~~~~la~~~-----~~~g~~~~A~~~~~~a~------~--~~~~~~--------------~~---------~~~~~ 408 (584)
....++..||.+| +.+.+..+|..++.--+ . ...... +. .....
T Consensus 540 ~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~ 619 (696)
T KOG2471|consen 540 DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARG 619 (696)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhH
Confidence 3345555555554 45566777766654310 0 000000 00 01123
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
..++++|.++.-+|++++|..++..+..+...... ..+......+-...|+...|...+++.--
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~------~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVN------VQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhcccc------HHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 46789999999999999999999999987653211 12222223344567999999888776543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=80.47 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc--------cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS--------TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.....-|..|++.|+|..|...|++++........... ....++.+++.++.++++|.+|+....+++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 44456688999999999999999999998875544221 23457889999999999999999999999995
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYI 518 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 518 (584)
.+....+++..|.++...|+++.|+..|++++++ .|....+...|..+-.+..++.+. .+.|..+
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999 888888888888887665554443 4555555
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
+..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-06 Score=78.32 Aligned_cols=132 Identities=17% Similarity=0.081 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
..+++..+..++..|++++|+..++..+...|++ ...+...+.++...++..+|.+.+++++.. .
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-------PYYLELAGDILLEANKAKEAIERLKKALAL--------D 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------C
Confidence 4677788888999999999999998876665544 456667899999999999999999999985 3
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.......++|.++.+.|++++|+..++..+.- +|+.+..|..||..|..+|+..+|...+.+...+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 344678889999999999999999999888876 7888889999999999999888877666555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=70.14 Aligned_cols=96 Identities=28% Similarity=0.368 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+.++++++.. .+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4568899999999999999999999885 2223478899999999999999999999999987 56
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 66688999999999999999999999998875
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-05 Score=66.68 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=185.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAA 283 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 283 (584)
..+|.-....+++++|+..|.+.+...-...+......-.+...++.+|...|++..--+........+.... .+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence 3456667788899999999999886521111111122334578899999999998877777666555444332 233333
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 284 IDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 284 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+...+-..+ .....++.-+..+...++...+.. ........-..+..++++.|+|.+|+......+.-.++ -++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcC
Confidence 333333322 345567777888887777654422 01222334456788899999999999999998888776 345
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.+.....+..-..+|....+..++...+..|.......+-.+...+..-..-|..+....+|.-|..+|-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56677788888899999999999988888877776665555544555555556777788899999999999998765543
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELF--EEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYI 518 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 518 (584)
.........-|..+..+. .+..++-...+ +..++.+ .....++....+..+.. +.+|..|+..|..-
T Consensus 241 ~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 321111111122223332 23333332222 2222211 22334556666666532 34566666666554
Q ss_pred H
Q 007930 519 L 519 (584)
Q Consensus 519 ~ 519 (584)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-07 Score=66.99 Aligned_cols=101 Identities=26% Similarity=0.162 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
+.+.+|.++-..|+.++|+.+|++++.. + ...+....++..+|..+...|++++|+..+++++..+ |+.+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA----G-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence 5678999999999999999999999883 1 1234456789999999999999999999999998761 2222
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
....+...++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3667778899999999999999999988775
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-05 Score=67.52 Aligned_cols=318 Identities=16% Similarity=0.100 Sum_probs=199.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHG--HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 281 (584)
...+.......++++++..+.+.+....... +......-.....+|..+...|+.++-..........+...+ .+..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHH
Confidence 3344455566677888888888776421111 111111234577899999999999887777765544433322 2233
Q ss_pred HHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 282 AAIDVSIGNIYM-SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 282 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
+.+...+-.... .-+..+.-+..+..+++-..+.. .....-..-..+..+|...++|.+|+......+.-.++ -
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK---l 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK---L 161 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---c
Confidence 333333433333 33455667777777777654432 01122334456889999999999999999999888877 3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
++......++..-...|....+..+|...+..|-......+-.+...+.+-..-|.++....+|.-|..||-++.+-+..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 45566677777788899999999999998888877766655555555555556677777889999999999999998877
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELF--EEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILE 516 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 516 (584)
.+++.. -..++..+-.+-...+..++--..+ +.+++. .....++....+..+.+ +.+|+.|+.-|+
T Consensus 242 ~~~~v~--A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 242 LDDDVK--ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred cCCcHH--HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 665422 2334444444445556666544443 333332 33445777888887754 346666666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 517 YILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 517 ~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.-+.- +|-...-+..|-..+.
T Consensus 312 ~eL~~--------D~ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 312 KELAE--------DPIVRSHLQSLYDNLL 332 (411)
T ss_pred HHHhc--------ChHHHHHHHHHHHHHH
Confidence 55543 5655554444444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-07 Score=77.67 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=86.8
Q ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVML-YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+..+..+ ...|+|++|+..|+..+..+.. ......+++.+|.+|+..|++++|+..|+++++. .|++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKS 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence 344555554 5679999999999999986432 3334678999999999999999999999999987 3567
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...++++.+|.++..+|++++|...|+++++.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999987
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-05 Score=79.55 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|+.+..|...-..+...++.++|.+.+++|+....-.. ......+|..+-+....-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 455566666666777889999999999999997652111 11111223333333444466677778888887773
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
+-...+..|..+|...+++++|.++++..++.+.+.. .+|...+..+..+++-+.|...+.+|+.
T Consensus 1528 -------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 -------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------KVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred -------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--------hHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3346788899999999999999999999998876332 4588999999999999999999999987
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.+ ..........|.+-++.|+.+.+...|+..+.. .|.....|.-+...-.+.|+.+....+|+++
T Consensus 1593 ~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6543 345666778899999999999999999998886 6888889999999999999999999999999
Q ss_pred HHHH
Q 007930 351 LRVC 354 (584)
Q Consensus 351 l~~~ 354 (584)
+.+.
T Consensus 1661 i~l~ 1664 (1710)
T KOG1070|consen 1661 IELK 1664 (1710)
T ss_pred HhcC
Confidence 9874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=76.68 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
.++.+.-++..|+|.+|...|..-++. .|+.+..+.++++||.+++.+|++++|...|..+++-+ |.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677888888999999999999999987 46677888999999999999999999999999998853 55889
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
.+++++.||.+..++|+.++|. ..|+.+++.-|......
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999 99999999888776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-07 Score=76.65 Aligned_cols=108 Identities=19% Similarity=0.068 Sum_probs=96.2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG---RVEDAIEILEYILKVR 522 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~ 522 (584)
+|..+.-|..||.+|+.+|++..|...|.+|+++ .|+.++++..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 4556788999999999999999999999999999 8888899999999887654 356899999999998
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.+..+++.||..++..|++.+|. ..++.+++..|....
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDP 262 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCc
Confidence 8999999999999999999999999 999999987665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.7e-06 Score=82.80 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=165.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+|+.+..|...-..+...++.++|.+.+++|+....- ....+...+|..+-++...-|.-+.-.+.|++|.+.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch
Confidence 7888888888888889999999999999999986511 111233445555555555556667777888888877644
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..++..|..+|...+++++|.++++..++.+.+ ...+|...|..++.+.+-+.|...+++|++.
T Consensus 1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 357778999999999999999999999887542 3578889999999999999999999999997
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+ .+..+.....|.+-++.|+.+.+...|+..+.- +|...+.|.-+...-.+.|+.+... ..++
T Consensus 1594 lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR-~lfe 1658 (1710)
T KOG1070|consen 1594 LPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVR-DLFE 1658 (1710)
T ss_pred cch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHH-HHHH
Confidence 321 236678888899999999999999999998886 8888888888888888888888877 6677
Q ss_pred HHHhh
Q 007930 560 NLLDS 564 (584)
Q Consensus 560 ~~~~~ 564 (584)
.++..
T Consensus 1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred HHHhc
Confidence 66643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=67.29 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=87.0
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
+.........+..|.-++..|++++|...|+-..-. .+.....+..||.++..+++|++|+..|..+..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334445566678899999999999999999877653 3344678899999999999999999999999988
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.++.+...+..|.||..+|+.+.|..+|+.++.
T Consensus 101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445556789999999999999999999999988
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-08 Score=64.22 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+.+|..+...|++++|+..|+++++. +|+...+++.+|.++..+|++++|. ..++.+++..|+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCC
Confidence 36899999999999999999999997 8999999999999999999999999 9999999888865
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=66.73 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=168.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007930 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALV 251 (584)
Q Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~ 251 (584)
.+.++|+..|++++++- |+....-..++-.+..+++.+|++++..+.|.+.+.........+... .+.+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHH
Confidence 47899999999999983 333344567888889999999999999999999998766543222111 112222222
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc----cHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL----SVASIF 327 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 327 (584)
-....+.+--.++|+..+..++...+.......-..+|.+|+..|+|.+-...+.+.-.-++...|+++. ....+|
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 2334455555566776666666666666666666789999999999999888888877777665555432 334455
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE-IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
..-..+|..+.+-.+-...|++++.+-..+ .||. ...+...=|..+...|++++|..-|-+|.+.+.+.......
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 555678888888888888999999886442 2333 33344445678889999999999998898887776344445
Q ss_pred HHHHHHHHHHHHHHhc
Q 007930 407 IAGIEAQMGVMLYVVG 422 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g 422 (584)
...-|..++..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5555667777777765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=68.94 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+..-|.-++..|+|++|..-|..|+.++..... .....+|.+.|.++.+++.++.|+.-..+++++ +|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 335578889999999999999999998665432 345678889999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (584)
...++...|.+|.++..+++|++.|++.+++ +|....+...++++--......+
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernE 220 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNE 220 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999998 88887777666666555444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-06 Score=61.70 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
.+..-|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|++-+++++++. ++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence 3455677888999999999999999999 68899999999999999999999999999999997 4555
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 6678899999999999999999999999987763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=62.84 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=112.6
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGL 458 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (584)
..=+++....-..+.+.+.+.. .-...+|..+...|++.+|...|++++.-. .......+..+++
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~ 132 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQ 132 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHH
Confidence 3334444444444444444433 334589999999999999999999998731 1123567889999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
..+..+++..|...+++..+.- + ....++....+|+++...|++.+|...|+.++.. -| ...+..
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~-----p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--------yp-g~~ar~ 197 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYN-----P-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--------YP-GPQARI 197 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcC-----C-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--------CC-CHHHHH
Confidence 9999999999999999888761 1 1233456788999999999999999999999996 33 346677
Q ss_pred HHHHHHHHhchHHHHHHHHHH
Q 007930 539 RLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+..+.++|+.++|...+-+
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHH
Confidence 789999999999999854443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.2e-07 Score=68.71 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.......+..|.-++..|++++|...|+-..-. ++...+.+..||.++..++++++|+..|..+..+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l----- 100 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL----- 100 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 344567788899999999999999999887776 6777788999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
.++++...+..|.++..+|+.+.|. ..++.+++.
T Consensus 101 ---~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~ 134 (165)
T PRK15331 101 ---LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER 134 (165)
T ss_pred ---ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence 5667777999999999999999999 899988874
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-06 Score=68.04 Aligned_cols=205 Identities=12% Similarity=0.045 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
+...+..++..|..|-..|-+.-|.--|.+++.+.|+.. .+++.+|..+...|+|+.|.+.|+..+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--------~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--------HHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 456677888999999999999999999999999876554 56999999999999999999999987764
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+. .+++|... .|..+- ...-++.+|...+.+-.+-..
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhcc
Confidence 7777788899999999999999999887765543 11122221 111111 123356666654443222211
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
.. -..++..+ . ..|+..+ ...++++.....+...-...+..+++.+|..+...|+.++|...|+-++
T Consensus 198 -----~e----~WG~~iV~-~--yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 198 -----KE----QWGWNIVE-F--YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred -----Hh----hhhHHHHH-H--HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 01 11222111 1 1222211 1233343333322211223346788999999999999999999999888
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 265 a 265 (297)
T COG4785 265 A 265 (297)
T ss_pred H
Confidence 6
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-06 Score=78.52 Aligned_cols=119 Identities=21% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.+-.++...++++.|+..+++..+. .+ .+...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3455666678999999999887662 23 34556899999999999999999999977 77778
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+...+..+...++++.|+...++++.+ .|....+|+.|+.+|..+|++++|. ..++
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLN 292 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALN 292 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHh
Confidence 99999999999999999999999999999 8999999999999999999999998 4444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.3e-06 Score=66.65 Aligned_cols=208 Identities=13% Similarity=0.064 Sum_probs=134.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
....+...+..++++|..|-..|- +.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|+..+
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL-~~LAR~DftQaLai---------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGL-RALARNDFSQALAI---------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhH-HHHHhhhhhhhhhc---------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 345666778899999999999998 89999999999987 56678899999999999999999999999999
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
++.+. .. .+..+.|..++.-|++.-|.+-+.+-.+. .+++|... .|..+- ...-+..+|...
T Consensus 127 ELDp~-----y~----Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tn 188 (297)
T COG4785 127 ELDPT-----YN----YAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTN 188 (297)
T ss_pred ccCCc-----ch----HHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHH
Confidence 87532 21 34778899999999999998877666554 23334322 222221 123356666554
Q ss_pred H-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCChhH
Q 007930 223 C-KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG-QENEVAAIDVSIGNIYMSLCRFDE 300 (584)
Q Consensus 223 ~-~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 300 (584)
+ +++........ ....+-+.+| +..+ ...++++..-..... -......+++.+|..+...|+.++
T Consensus 189 L~qR~~~~d~e~W-----G~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 189 LKQRAEKSDKEQW-----GWNIVEFYLG-------KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred HHHHHHhccHhhh-----hHHHHHHHHh-------hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3 33333322211 1111122222 2211 112222221111000 012346778999999999999999
Q ss_pred HHHHHHHHHHH
Q 007930 301 AIFSYQKGLTV 311 (584)
Q Consensus 301 A~~~~~~al~~ 311 (584)
|...|+-++..
T Consensus 256 A~~LfKLaian 266 (297)
T COG4785 256 ATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=81.85 Aligned_cols=148 Identities=10% Similarity=0.026 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC--------HHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR--------INEATELFEEAR 477 (584)
Q Consensus 409 ~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~ 477 (584)
.-++..|.-+...+ +..+|+.+|++++++ .|..+.++..++.++..... ...+....++++
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 33445555555444 478999999999995 55667788877777765432 223333333333
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHH
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKS 557 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (584)
.+ +..+..+.++..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|+.++|. ..
T Consensus 412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~ 475 (517)
T PRK10153 412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DA 475 (517)
T ss_pred hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HH
Confidence 32 224445678889999999999999999999999998 674 789999999999999999999 88
Q ss_pred HHHHHhhhhhhhHHHHHhHhhcCCCC
Q 007930 558 LENLLDSNAYRVKKEVTKRRSGFGFR 583 (584)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (584)
++.++..+|..+. ..-|+.+.|.
T Consensus 476 ~~~A~~L~P~~pt---~~~~~~~~f~ 498 (517)
T PRK10153 476 YSTAFNLRPGENT---LYWIENLVFQ 498 (517)
T ss_pred HHHHHhcCCCCch---HHHHHhcccc
Confidence 8888888887654 3345555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-06 Score=76.67 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=121.0
Q ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHH
Q 007930 412 AQMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---------YRINEATELFEEARGV 479 (584)
Q Consensus 412 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~ 479 (584)
+..|......+ ..+.|..+|.+++.... ..|..+.++..++.+++.. .+..+|.+..++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSD-----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhccc-----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 45565555444 45678888888883211 3556788888888888754 2456788888889988
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
++..+.++..+|.+....|+++.|...|++|+.+ +|+.+.+++..|.+..-.|+.++|. ..++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~ 396 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-ICID 396 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence 8888999999999999999999999999999999 9999999999999999999999999 9999
Q ss_pred HHHhhhhhhhHHHHHhHhh
Q 007930 560 NLLDSNAYRVKKEVTKRRS 578 (584)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (584)
.++..+|-+....+++-|-
T Consensus 397 ~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHhccCchhhHHHHHHHHH
Confidence 9999999998888888775
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-05 Score=64.53 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.-|......|++++|+..|+...... +..|....+...++.++++.+++++|+...++-+...|.+.+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--- 106 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--- 106 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---
Confidence 348888999999999999999999987663 335666789999999999999999999999999999886654
Q ss_pred HHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCcchH--------------HHHHHHHHHHHHHcCChh
Q 007930 239 LEEAADRRLMALVYEAK-----ADYESALEHLVLASMVMIANGQENEV--------------AAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~ 299 (584)
...+++..|.++... .+...+...+...-.+....++.+-. +.--..+|..|.+.|.+.
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 345677777776643 34444444444444444555554322 222356789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.|+..++.+++.+.. .+....++..+..+|..+|-.++|...-
T Consensus 185 AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 185 AAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999887543 4667788889999999999999986553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0009 Score=64.63 Aligned_cols=185 Identities=18% Similarity=0.073 Sum_probs=130.5
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIA---NGLTEISAIYE----ALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
-.||-+.++..+.++.+. . +-..+... -.|+.....+. ...+.+.|.+.+....+.+|+. .
T Consensus 200 F~gdR~~GL~~L~~~~~~-~----~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-------~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-E----NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-------A 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-C----CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-------H
Confidence 468899999999988652 1 11222111 11122111122 2345677888888877777665 5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+...|+++...|+.++|++.|++++..... .......+++.++.++..+.+|++|..++.+..+.. .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSE----WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------K 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------c
Confidence 66778999999999999999999998853222 122345678999999999999999999999988861 3
Q ss_pred CchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRV-------EDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
...+...+..|.|+...|+. ++|.+++.++-.+..+..|...|...-+.......
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~ 398 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKY 398 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHH
Confidence 34555667788999999999 89999999998888887776667655544444433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00037 Score=62.40 Aligned_cols=256 Identities=14% Similarity=0.111 Sum_probs=147.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHh-----ccCCchh
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDI-----GKGSDRA 154 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 154 (584)
.+..|+ ++.|..++.++-.... ..........+..+++.|......+ ++++|..+++++.++.+. ...++..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 457888 9999999999988765 2223444677889999999999999 999999999999999744 2223333
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
...+.++..++.+|...+.++.... ..++++....-++ +....+..--.+....++.+++.+.+.+++....-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~----~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG----NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC----CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 4566789999999999888764443 4444555444333 2233332222333337888888888888877543221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHH--HcCChhHH--HHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE-VAAIDVSIGNIYM--SLCRFDEA--IFSYQKGL 309 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~--~~g~~~~A--~~~~~~al 309 (584)
. ... .+...+-.. .......+...+...+.. ......+ ..... .+-.++. ..++.... ++.....+
T Consensus 156 ~--~~~--~~l~~i~~l--~~~~~~~a~~~ld~~l~~--r~~~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 156 S--NFD--SILHHIKQL--AEKSPELAAFCLDYLLLN--RFKSSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred c--hHH--HHHHHHHHH--HhhCcHHHHHHHHHHHHH--HhCCChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHH
Confidence 1 111 011111111 112334555666554432 2222222 22221 1222222 22222233 44444444
Q ss_pred HHHHHhhcCC-cccH----HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 310 TVFKATRGED-HLSV----ASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 310 ~~~~~~~~~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
+...+..+.. .+.. ...+.+.|...++.++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4333222111 2222 23455668889999999999999998764
|
It is also involved in sporulation []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=61.47 Aligned_cols=66 Identities=33% Similarity=0.368 Sum_probs=57.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
...|++++|+..|++++.. +|+...++..+|.+|...|++++|...+++++.. +|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 5689999999999999999 8999999999999999999999999999999987 77776666655
Q ss_pred HH
Q 007930 541 AE 542 (584)
Q Consensus 541 ~~ 542 (584)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00066 Score=60.27 Aligned_cols=301 Identities=12% Similarity=-0.009 Sum_probs=201.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.-|.+-.--|+-..|...-.++-.+.. .+.+ .-++..-++.-...|+++.|.+-|+-++..-+ .. .
T Consensus 89 StGliAagAGda~lARkmt~~~~~lls----sDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tR-------l 154 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLS----SDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TR-------L 154 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhh----ccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HH-------H
Confidence 345666677888888888777765532 2222 23444456677788999999999988775221 11 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.-+..|-.--...|+.+.|..+-+.+... -+....+....-...+..|+++.|+++.+....... .+.+...
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~ae 226 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAE 226 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHH
Confidence 11223333345679999999999887653 445555555555667789999999999987665422 1111112
Q ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 323 --VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 323 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+..+..-+.... ..+...|.....++.++.. +.+-.-..-+..++..|+..++-..++.+.+..+
T Consensus 227 R~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~p---------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-- 294 (531)
T COG3898 227 RSRAVLLTAKAMSLL-DADPASARDDALEANKLAP---------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-- 294 (531)
T ss_pred HHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCC---------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--
Confidence 2222222222222 3457788888888888753 3445556678899999999999999988877533
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
++ .++.+|....--+.++.-++++-.+.. + .++........+..-+..|++..|..--+.+..+
T Consensus 295 ---HP-------~ia~lY~~ar~gdta~dRlkRa~~L~s-l----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 295 ---HP-------DIALLYVRARSGDTALDRLKRAKKLES-L----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred ---Ch-------HHHHHHHHhcCCCcHHHHHHHHHHHHh-c----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 34 345555555544566666666655422 2 2334677888899999999999999988888877
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDAL-GRVEDAIEILEYILKV 521 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 521 (584)
.|.. .++..|+.+-... |+-.++..++-+++..
T Consensus 359 -------~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -------APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4443 6788889988776 9999999999999874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-06 Score=71.56 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
.++.|.-++..|+|..|...|..-++.+. .....+.++++||.+++.+|+++.|...|..+++- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 56788888999999999999999888543 34456789999999999999999999999999886 366888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
.+++++.||.+...+|+.++|...|+++++- .|....+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~--------YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKR--------YPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 8999999999999999999999999999997 56655444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00069 Score=60.15 Aligned_cols=302 Identities=17% Similarity=0.090 Sum_probs=201.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhh
Q 007930 77 LARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALA 156 (584)
Q Consensus 77 ~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (584)
.|.+....|+ -..|...-.++-.++.+ +. ...++..-+..-.-.|+++.|.+-|+-.+.. |..
T Consensus 90 tGliAagAGd-a~lARkmt~~~~~llss----Dq---epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEt 152 (531)
T COG3898 90 TGLIAAGAGD-ASLARKMTARASKLLSS----DQ---EPLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PET 152 (531)
T ss_pred hhhhhhccCc-hHHHHHHHHHHHhhhhc----cc---hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHH
Confidence 3444445566 66777776666655442 22 2334445677778899999999999987642 222
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 157 KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 157 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
..-.+..|-.--...|..+.|+.+-+.+... -|....+....-......|+++.|+++.+.......-..+.
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 2222333334446789999999999999887 45666666666677789999999999998876654333222
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
.....+..+...+.... ..+...|...-.++.++ .++..-.-..-+..++..|+..++-.+++.+.+.
T Consensus 225 aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----- 292 (531)
T COG3898 225 AERSRAVLLTAKAMSLL-DADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA----- 292 (531)
T ss_pred HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence 22222222222222222 23466666666666553 5666666677889999999999999999988775
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+.||.. +.+|....--+.++.-++++-.+..- .++.......++..-...|++..|..--+.+...
T Consensus 293 -ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 -EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred -CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 124543 44455544455666677776665422 2445678888899999999999999888877776
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVK 437 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 437 (584)
.+.. .++..++.+-... |+-.+....+-+++..
T Consensus 359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5543 4566778887655 9999999999998873
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-05 Score=62.97 Aligned_cols=185 Identities=16% Similarity=0.060 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
+..+++-|......|++++|...|+......+-. +..-.+...++.++.+.+++++|+...++-+.... .+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----TH 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CC
Confidence 5678888889999999999999999876443322 22256677899999999999999999999988654 35
Q ss_pred chHHHHHHHHHHHHHhh-----CCH---HHHHHHHHHHHHHHHHHhCCCCCch--------------HHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQL-----YRI---NEATELFEEARGVLEQECGSCHLDT--------------LGVYSNLAATYDA 504 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~-----g~~---~~A~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~la~~~~~ 504 (584)
+....+++..|.+++.. .+. .+|+..|++.+.. . |+.+-. +.--..+|..|.+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---y--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---Y--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---C--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888887643 233 3444455555444 2 212211 2223456889999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.|.+..|...++++++-+. +.+...+++..+.++|..+|-.++|. ..-..+....|++...
T Consensus 180 r~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~ 240 (254)
T COG4105 180 RGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWY 240 (254)
T ss_pred hcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcch
Confidence 9999999999999998743 35667889999999999999999998 5555555555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-05 Score=59.11 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+..-|..+...|+.+.|++.|.+++.+ -|..+.+|.+.+..+.-+|+.++|+..+++++++. |+..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t 111 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT 111 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence 34555677888899999999999999999 78889999999999999999999999999999983 4444
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.....++..-|.+|..+|+.++|. ..++.+-...+.-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR-~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAAR-ADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHH-HhHHHHHHhCCHH
Confidence 455678889999999999999998 7777665554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=60.88 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...++.-|...+..|+|++|++.|+.....+ |..+....+...|+.+|...|++++|+..+++-+++ -|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678889999999999999999999887762 445666789999999999999999999999999997 466
Q ss_pred ChhHHHHHHHHHHHHHHhch---------------HHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 530 NPDIDDEKERLAELLKETGR---------------ARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~---------------~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
||+...+++..|.++..+.. ..+|. ..++.++..-|++.....
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcCChhHHH
Confidence 88889999999999999887 78888 888999988888776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00045 Score=66.63 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=121.9
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccH---HHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSV---ASIFIRLADLYY----RIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
-.||-+.++..+.++.+. ..+. .+.. ...|+.....+. ...+.+.|.+.+......+++ -
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~---~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~---------s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIR---SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN---------S 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcc---hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC---------c
Confidence 458889999998887652 1111 1111 111222211122 234566777777777776633 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...+...|.++...|+.++|++.+++++...... ......+++.++.++..+.+|++|..++.+..+. +.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 5677888999999999999999999988533322 1222456789999999999999999999998874 34
Q ss_pred chHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 447 AFFGIVLNQMGLACLQLYRI-------NEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
...+...+..|.++...|+. ++|.+++.++-....+..+...|-.
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 44566777889999999999 8888888888888777666555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-06 Score=66.14 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
..+-.-|.-++..|+|++|..-|..|+.+++.... .....+|.+.|.++.+++.++.|+..+.+++++ .+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~p 165 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NP 165 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cc
Confidence 34455677889999999999999999999988744 334567789999999999999999999999996 55
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
.+..++...+.+|..+.++++|++-|++.++. +|....+...++++-
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLP 212 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcC
Confidence 67788899999999999999999999999998 777655555555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-06 Score=79.62 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHH
Q 007930 369 GLTEISAIYEALN---EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY--------GEARSSFESAVVK 437 (584)
Q Consensus 369 ~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~a~~~ 437 (584)
.++..|.-+...+ +...|+.+|++++++.|+. +.++..++.++.....+ ..+....++++.+
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3344444444433 4779999999999998776 55555666666444322 2333333332221
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. ..+..+.++..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|++++|.+.|++
T Consensus 414 ----~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ----P--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ----c--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 11222467888898988999999999999999999 775 67999999999999999999999999
Q ss_pred HHHH
Q 007930 518 ILKV 521 (584)
Q Consensus 518 a~~~ 521 (584)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9998
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00064 Score=60.64 Aligned_cols=207 Identities=32% Similarity=0.399 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.......+..+...+++..+...+....... ..+.....+...+..+...+++..++..+..++......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELE-------LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 3444555555555555665555555555420 012234455555555555555555555555555433222
Q ss_pred cccHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGV-MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.......+. ++...|+++.|...+.+++.. . .. .......+...+..+...+++++|+..+.+++..
T Consensus 129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 129 ----DLAEALLALGALYELGDYEEALELYEKALEL-D---PE-LNELAEALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C---CC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 011112222 555666666666666665331 0 00 0122334444444455556666666666666665
Q ss_pred HhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 483 ECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 483 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
.+. ....+..++..+...+++++|...+..++.. .|........++..+...|+++++. ..+...
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (291)
T COG0457 197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEAL-EALEKA 262 (291)
T ss_pred -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence 333 3455566666666666666666666666655 3333444455555555444455555 444444
Q ss_pred Hhhhh
Q 007930 562 LDSNA 566 (584)
Q Consensus 562 ~~~~~ 566 (584)
+...+
T Consensus 263 ~~~~~ 267 (291)
T COG0457 263 LELDP 267 (291)
T ss_pred HHhCc
Confidence 44333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=76.72 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=99.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVL 453 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (584)
-.++...++++.|+..+++..+..++ +...++.++...++..+|+..+++++.. .+.....+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE----------VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc----------HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 44555668899999999886654322 3345899999999999999999999963 33347888
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
...+..+...++++.|+...+++++. .|.....|+.|+.+|..+|+++.|+..+..+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999999 8999999999999999999999999877644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=67.96 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---YRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+.-|..||.+|..+|++..|...|.+++++ .+.....+..+|.++..+ ....++...+++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 556778999999999999999999999997 233467888888888765 3567899999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|....+++.||..++..|++.+|...++..++.
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999986
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-05 Score=72.24 Aligned_cols=161 Identities=12% Similarity=-0.016 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEALN---EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV---------GRYGEARSSFESAVVK 437 (584)
Q Consensus 370 ~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~ 437 (584)
++..|......+ ..+.|+.+|.+++...+ ..+..+.++..++.++... .+..+|.+..++++++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSD----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhccc----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 345555554444 34677888888883221 1233366666777776554 2345666777777764
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.+..+.++..+|.+....++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|.+.+++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445789999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHH-HHHhchHHHHHHHHH
Q 007930 518 ILKVREEKLGTANPDIDDEKERLAEL-LKETGRARNRKGKSL 558 (584)
Q Consensus 518 a~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~l 558 (584)
++++ +|....+-..--.+ ..--...++|+.-++
T Consensus 398 alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 398 SLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred Hhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 9998 77665544332222 233456777773333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=59.37 Aligned_cols=67 Identities=31% Similarity=0.328 Sum_probs=59.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
..+|...+++++|++++++++.+ +|+....+...|.++..+|++++|...++++++. .|+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--------SPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--------CCCcHHH
Confidence 56788999999999999999999 8889999999999999999999999999999987 5655554
Q ss_pred HHH
Q 007930 537 KER 539 (584)
Q Consensus 537 ~~~ 539 (584)
...
T Consensus 66 ~~~ 68 (73)
T PF13371_consen 66 RAL 68 (73)
T ss_pred HHH
Confidence 443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=61.38 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
...++.-|.-.+..|+|.+|++.|+.....+. ..+....+...++.+|+..+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45566889999999999999999998876432 23445678899999999999999999999999999 688
Q ss_pred CCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGR---------------VEDAIEILEYILKV 521 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~ 521 (584)
||...-+++..|.++..+.. ..+|...|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 88999999999999998876 67788888877776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00019 Score=59.94 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+.+.+..++...|.|.-....+.+.++..+.. . ......+|.+..+.|+.+.|..+|++.-+....+ .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~---~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~ 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ---E---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQG 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc---c---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccch
Confidence 33444455555555555555555555422111 1 2233345555555555555555555544322211 12233
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...+..+.+.++...+++.+|...+.+++.. ++..+.+..+-|.|..-.|+..+|++..+.++++
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445555555555555555555555555 4445555555555555555555555555555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00022 Score=56.21 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=120.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
..+.=+.+....-..+.+++.|... ..+.+|......|++.+|..+|++++. |........+..++
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTvq---------nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA 131 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTVQ---------NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLA 131 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhHH---------HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHH
Confidence 3344455555555555555554433 367899999999999999999999864 34445566788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
+..+..+++..|...+++..+.-. ....+.....+|..+..+|++.+|...|+.++..+.. ...
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~a 195 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQA 195 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHH
Confidence 999999999999999998877621 1234456677899999999999999999999998743 345
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
....+..+..+|+.++|..-+....+.....
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 5667888999999999888777666554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0016 Score=57.96 Aligned_cols=207 Identities=29% Similarity=0.342 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
........+..+...+++..+...+...... ...+.....+..++..+...+++..++..+..++......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 3566778888999999999999999988764 0157778888999999999999999999999998865331
Q ss_pred CChHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISA-IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 361 ~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.......+. ++...|+++.|...+.+++...+. .......+...+..+...++++.|+..+.+++....
T Consensus 129 ------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 129 ------DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred ------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 122233333 899999999999999999553221 122344555666668889999999999999998632
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.. ....+..++..+...+++++|...+..++.. .+.....+..++..+...+.++++...+.+++
T Consensus 199 ~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 199 DD-------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 3567889999999999999999999999998 55556677888888887788999999999999
Q ss_pred HH
Q 007930 520 KV 521 (584)
Q Consensus 520 ~~ 521 (584)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 87
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=60.72 Aligned_cols=241 Identities=15% Similarity=0.074 Sum_probs=160.0
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
.+.++|+..|++.+++- ......-..++-.+..+++.+|+|++-.+.|.+.+...+.....+.. -.+.+.+-..-.
T Consensus 41 ~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiS 116 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYIS 116 (440)
T ss_pred cCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHh
Confidence 47899999999887753 22233445677888999999999999999999999887665433321 122233333223
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----cccHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----HSTIAGI 410 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~ 410 (584)
...+.+--.++|+..++..+.. .+......+-..||.+|+..|+|.+-.+.+.+.-..+...-|. ...+..+
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdA---KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDA---KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh---hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 3445555556666666655442 2222334556679999999999999888888877777665442 2345566
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
|..-..+|-.+.+-.+-...|++++.+-..+. ++...+.+...=|..+.+.|++++|-.-|-+|.+-+.+.+.+.. .
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP--HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR-t 270 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIP--HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR-T 270 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCC--chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch-h
Confidence 66667788888888888899999998754432 33334444444567788899999999998888877665544322 1
Q ss_pred hHHHHHHHHHHHHHcC
Q 007930 491 TLGVYSNLAATYDALG 506 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g 506 (584)
..--|..||..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2223455666666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-06 Score=72.34 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+...|.-|+.+|+|++|+.+|.+++.. .|..+..+.+.+.+|.++.+|..|......|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 345788999999999999999999998 7877788999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+..+|.+.+.+-..+|+..+|+ +..+.+|...|++..
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAK-KDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcccHH
Confidence 8999999999999999999999 999999988887543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-06 Score=76.81 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG---VYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..|.....++++|.+|...|+|++|+..|++++++ +|+... +++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999999 777664 5999999999999999999999999997
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-06 Score=57.56 Aligned_cols=68 Identities=25% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 498 LAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
|..+|...+++++|++++++++.+ +|+....+...|.++..+|++.+|. ..++.+++..|+......+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPDDPDARAL 68 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCCcHHHHHH
Confidence 457899999999999999999999 8999999999999999999999999 9999999998877665533
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0028 Score=56.86 Aligned_cols=253 Identities=14% Similarity=0.066 Sum_probs=147.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH-c---CCc----chH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA-DYESALEHLVLASMVMIA-N---GQE----NEV 281 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~-~---~~~----~~~ 281 (584)
...|+++.|..++.++-..............+..++++|......+ +++.|..+++++.+++.. . ... ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5789999999999999887753332234457888999999999999 999999999999999754 1 112 245
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..++..++.+|...+.++...+ ..++++..+... +..+..+..--.+....++.+.+.+.+.+.+....-.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---- 154 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---- 154 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc----
Confidence 6778889999999888764444 444444444433 3333333222233333788899988888888764310
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHH--HHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEA--RSSFESAVVK 437 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A--~~~~~~a~~~ 437 (584)
... ..........+. ......|...+...+...-....+. ..... -+..++...+ +.... ++..+..+..
T Consensus 155 -e~~-~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r~~~~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 -ESN-FDSILHHIKQLA-EKSPELAAFCLDYLLLNRFKSSEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred -cch-HHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHhCCChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 011 111111111112 2334566677766665443332221 22221 1222222222 22222 4444444443
Q ss_pred HHHc-CCCCCch----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 438 LRAS-GESKSAF----FGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 438 ~~~~-~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.... ..+-... .-..+.+.|...+..++|++|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2222 2221111 123456678889999999999999998774
|
It is also involved in sporulation []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.7e-06 Score=56.88 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=53.3
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 503 DALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
...|++++|+..|++++.. +|++..++..++.++...|++++|. ..++.++..+|+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAE-ELLERLLKQDPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHH-HHHHCCHGGGTTHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCHHH
Confidence 5789999999999999998 8999999999999999999999999 999999988887543
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=51.28 Aligned_cols=41 Identities=46% Similarity=0.732 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.++.+||.+|..+|++++|..++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46889999999999999999999999999999999999985
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=73.37 Aligned_cols=74 Identities=15% Similarity=-0.020 Sum_probs=64.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
...+|+....++++|..++..|+ |++|+..|++|+++ .+.+.....+++++|.+|..+|++++|+..++++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44789999999999999999999 99999999999997 223333335699999999999999999999999998
Q ss_pred H
Q 007930 144 V 144 (584)
Q Consensus 144 ~ 144 (584)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9e-06 Score=70.17 Aligned_cols=105 Identities=23% Similarity=0.243 Sum_probs=91.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
..|.-|+++|+|++|+.+|.+++.. .+..+..+.+.+.+|+++.++..|..-+..|+.+ +....
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~ 165 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYV 165 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHH
Confidence 5688999999999999999999984 4445678889999999999999999999999999 77788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|...+.+-..+|+..+|.+.++.++++ .|++.+....++
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L--------EP~~~ELkK~~a 206 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL--------EPKNIELKKSLA 206 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh--------CcccHHHHHHHH
Confidence 89999999999999999999999999998 677655444333
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0027 Score=53.91 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=153.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 162 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
..++.-....+++++|+..|.+.+......-...-.+.-.+...++.+|...|++..--+......+....... +..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk---~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK---PKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---hhH
Confidence 45666677888999999999888765111000001233457788999999999988766666555554444332 222
Q ss_pred HHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 242 AADRRLMALV-YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 242 a~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
+.+...+..- -.....++.-+..+...++...+....-.....-..+..+++..|.|.+|+......+.-+++.. +.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence 2233333222 22345677777777777766655444444445556788899999999999999999888877764 45
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE-IANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+....++..-..+|....+..++...+..+.......+ -+|. .+..-..-|..++...+|..|..+|-++++-+..
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 66777777778899999999998888887776665432 2222 2333333466677788999999999999887654
Q ss_pred C
Q 007930 400 T 400 (584)
Q Consensus 400 ~ 400 (584)
.
T Consensus 239 l 239 (421)
T COG5159 239 L 239 (421)
T ss_pred c
Confidence 4
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0039 Score=54.45 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=189.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCc-hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD-RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
..+.......++++++..+.+.+.........+ .....-.+...+|..+...|++.+-....+..-.....+. .+.
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kak 85 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAK 85 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHH
Confidence 344555566677888888888776432111111 1111124578899999999999887776666555443321 233
Q ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 199 VAETCRYLAEAH-IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 199 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.+.....+-... ..-+..+.-+.++..+++....... ....-..-..+..+|...++|.+|+......+..+++..+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD 163 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD 163 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444333 3334566777778888777665442 2222333456788999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
......++..-...|+...+..+|...+..|.......+-+ ....+..-..-|.++..-.+|..|..||-++.+-+..
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s- 241 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS- 241 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHccccc-
Confidence 99999999999999999999999999888887765554421 1112222233366667778999999999999998765
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~ 435 (584)
..++.....++-.+-.+-...+..++--..+..=..+. ..+.. ..+...++..+.+ ..+|+.|+.-|..-+
T Consensus 242 --~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~---i~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 242 --LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRD---IDAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred --cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcc---hHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 33333444444444444555566665444443222211 11111 3344455555543 456777777776655
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 315 ~ 315 (411)
T KOG1463|consen 315 A 315 (411)
T ss_pred h
Confidence 4
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00043 Score=60.05 Aligned_cols=163 Identities=13% Similarity=0.006 Sum_probs=98.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
+.+....|++.+|....++.++- .|....++..--.+++..|+.+.-...+++.+... ..+.|-...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-----n~dlp~~sY 176 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-----NADLPCYSY 176 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-----CCCCcHHHH
Confidence 33445567777776666666664 56555566666666677777777666666665543 233344445
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
....++..+...|-+++|.+..++++++.+.. ..+...++.++...|++.++.++..+.-...+. ..-.
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ml 245 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFD-------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWML 245 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcc-------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHH
Confidence 55556666677777777777777777665443 455556667777777777777776665544332 1111
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
...-|...+.++...+.|+.|++.|..
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 222344556666666777777777754
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0065 Score=51.13 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---------hc-cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD---------IG-KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYES 183 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 183 (584)
....|...-.++.++..+++|..-++..-++.. .. .+......-+.....-+.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 344555555666677777777665544322210 00 11111122233344556677777888777766655
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHH
Q 007930 184 GLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALE 263 (584)
Q Consensus 184 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 263 (584)
.....+++ -.........+..++.+++-+. .+.+.+..++.-.|+|.-.+.
T Consensus 148 L~~~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 148 LKTVVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHH
Confidence 54442221 1111122222444555544433 236677788888889988888
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES 343 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 343 (584)
.+.+.+.. +++........+|.+.++.||.+.|..+++.+-+...... +-.....+..+.+.+|.-.+++.+|
T Consensus 199 ~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 199 AYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred HHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHH
Confidence 88877662 4455566678899999999999999999987765544443 1234556777888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
...+.+++....+ .+.+.++.|.|....|+..+|++.++.++++.|..
T Consensus 272 ~r~~~~i~~~D~~---------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 HRFFTEILRMDPR---------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhccccCCC---------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999888776433 35677888999999999999999999888776654
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0024 Score=46.16 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 199 VAETCRYLAEA--HIQAMQFDEAENLCKKILEIHREHGHSASLE----EAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 199 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
++.+|..|+.. ....|-|++|...+.+++++....+.....+ .+.++-.|+..+..+|+|++++...++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44555555444 4567899999999999999988766543222 46778889999999999999999999999988
Q ss_pred HHcCCcc-----hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 273 IANGQEN-----EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 273 ~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
...+... ..+.+.++.+..+...|+.++|+..|+.+-++..+..|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8766522 234455788899999999999999999999987776554
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0027 Score=45.88 Aligned_cols=120 Identities=23% Similarity=0.181 Sum_probs=88.5
Q ss_pred HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCCc-----ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAI--YEALNEHEEALKLLQKAMKLLEDTPGYH-----STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 366 ~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
++.+|..|+.. ....|-|++|...+.++.++....+... -.-+.++..|+..+..+|+|++++..-++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566666544 4456789999999999999988875531 1235677889999999999999999999999988
Q ss_pred HHcCCCCCc---hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 439 RASGESKSA---FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 439 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..-++-+.. .+..+.++.+..+...|+.++|+..|+.+.++..+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 876654332 34556678899999999999999999999999877655
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.5e-05 Score=46.59 Aligned_cols=41 Identities=37% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+.++.++|.+|..+|++++|..++++++.+.++..|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999998885
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=53.00 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=81.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC---C-Cc----------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGES---K-SA----------FFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~-~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
..|......|+.+.++..+++++.+++...-. . .. ....++..++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 34555666778888888888888877532111 1 10 1234566778888899999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
. +|..-.++..+..+|...|+..+|+..|+++...+.+-+|.
T Consensus 91 ~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 91 L--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp H--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred c--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 9 89998999999999999999999999999999999988874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0066 Score=56.38 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
..-...++..+ +++-++...+|+++ +|+-+.+|..|+.-. .....+|..+|+++++..+...+....
T Consensus 173 ~IMq~AWRERn-p~aRIkaA~eALei---------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~- 239 (539)
T PF04184_consen 173 EIMQKAWRERN-PQARIKAAKEALEI---------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQF- 239 (539)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHh---------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhh-
Confidence 33344556666 99999999999997 566777877776532 345689999999999887554332211
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
....|..-+.. .. .+..-...+...+|.|..+.|+.++|++.++..++..+...
T Consensus 240 ------------~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~- 293 (539)
T PF04184_consen 240 ------------LQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD- 293 (539)
T ss_pred ------------hhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-
Confidence 01111111110 00 00111233445566666666666666666666665543211
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
...++.++..++...+.|.++...+.+
T Consensus 294 -----~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 294 -----NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -----hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 123456666666666666666655554
|
The molecular function of this protein is uncertain. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00089 Score=55.41 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC---CCch-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES---KSAF-------FGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++..-|.-++..|+|.+|...|..|+..++.+.-. ..+. ....+.+.++|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999988766211 1111 234678899999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
. +|....+++..|.+....=+..+|...|.+++++ +|..+.+...-
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--------dpslasvVsrE 304 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--------DPSLASVVSRE 304 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------ChhhHHHHHHH
Confidence 8 8999999999999999999999999999999998 88776665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=46.79 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
.++..+|.+|..+|++++|++.|+++++. +|++..++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 47889999999999999999999999998 8999999998875
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.048 Score=60.63 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 383 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
..+-+-.+++++-......+....++.+|...|++....|+++.|..++-.|.+. . .+.+....|..+..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r--~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------R--LPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------c--cchHHHHHHHHHHh
Confidence 4455555566555444444556778999999999999999999999988888763 1 35788899999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhC-C--CCC------chHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHhCCCCh
Q 007930 463 LYRINEATELFEEARGVLEQECG-S--CHL------DTLGVYSNLAATYDALGRV--EDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~-~--~~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.|+-..|+..+++.++....-.. + +.| ....+...++.-....|++ .+-+++|..+.++ +|
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ 1786 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LP 1786 (2382)
T ss_pred hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cc
Confidence 99999999999999976533211 1 001 1122444555555566664 3456778888887 56
Q ss_pred hHHHHHHHHHHHHH
Q 007930 532 DIDDEKERLAELLK 545 (584)
Q Consensus 532 ~~~~~~~~l~~~~~ 545 (584)
+....++.+|..|.
T Consensus 1787 ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1787 EWEDKHYHLGKYYD 1800 (2382)
T ss_pred cccCceeeHHHHHH
Confidence 55555666664433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.013 Score=53.57 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHhcCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR---IGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 358 (584)
..+..++-..|....+|+.-+.+.+..-.+ ...+......+....|.++.+ .|+.++|+..+..++.....
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-- 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-- 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence 445567777788888998887777664433 111123455667788888888 89999999999997655422
Q ss_pred CCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
...+++..+|.+|... ...++|+..|.++.++.++. .+ -.|++.++...|...+...
T Consensus 215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~-----GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YS-----GINAATLLMLAGHDFETSE 280 (374)
T ss_pred ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cc-----hHHHHHHHHHcCCcccchH
Confidence 2346777888887543 24677888888887776433 11 1366777777776444443
Q ss_pred HHHHHH-HH---HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 430 SFESAV-VK---LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 430 ~~~~a~-~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
-.++.. .+ ..+.+........+.+..++.+....|++++|.+.++++..+
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333333 21 212222223333456667788888899999999999999987
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0037 Score=57.91 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=128.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC--------
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT-------- 361 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 361 (584)
.-..+..+...-++...+|+++ +|+.+.+|..|+.-. .....+|.++++++++..+......
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3344567778888888899988 677888887776532 2335778888888887665443111
Q ss_pred --------ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 362 --------APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 362 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+..-...+...+|.+..+.|+.++|++.++..++..+.. ....+..++..++...+.|.++...+.+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 001124456789999999999999999999988765432 2356778999999999999999888777
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHh-hCC---------------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQ-LYR---------------INEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
--++ .-+..+...+.-+.+-.+ .++ -..|.+.+.+|++. +|.++..+..
T Consensus 321 YdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef--------NPHVp~YLLe 385 (539)
T PF04184_consen 321 YDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF--------NPHVPKYLLE 385 (539)
T ss_pred hccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh--------CCCCchhhhc
Confidence 4321 112223333333333222 111 13466778888877 6665543332
Q ss_pred H------HHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 498 L------AATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 498 l------a~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+ -.-+.+.|+ .||+.|---.+..+++
T Consensus 386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR 417 (539)
T ss_pred cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence 2 112344554 6777666666655544
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.018 Score=50.52 Aligned_cols=165 Identities=10% Similarity=-0.071 Sum_probs=128.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (584)
+.+..-.|++.+|....++.++-+|... .++...-..++.+|+.......+++.+.. -+.+.|-...+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence 4456678999999999999998776543 22555566778888888888888765431 1445666677788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
.++..+...|-|++|++..++++++ ++....+....+.++...|++.++.++..+.-...+. .....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHH
Confidence 8899999999999999999999998 7888899999999999999999999998887655433 12223
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
..-|-..+.++...+.++.|++.|..-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3445567888888899999999998744
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.029 Score=52.90 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=101.9
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG-VLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~ 482 (584)
.......+...+.+..+.|+++.|...+.++......... ....+....+.++...|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 4455678889999999999999999999987764221111 1245677788999999999999999998888 3332
Q ss_pred Hh-------------------------CCCCCchHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 483 EC-------------------------GSCHLDTLGVYSNLAATYDAL------GRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 483 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.. .......+.++..+|...... +..+++...|++++++ +|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 21 011233456777778777777 8889999999999998 88
Q ss_pred hHHHHHHHHHHHHHHhchHHH
Q 007930 532 DIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~ 552 (584)
....+++.+|..+...-+.+.
T Consensus 290 ~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 888999999988887654443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.093 Score=58.54 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
..+-+-.+++++-..... .......+.+|...|++....|+++.|..++-+|.+.. ...++...|..+.
T Consensus 1645 ~~epILa~RRs~l~~~~~--~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR--SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLW 1713 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHH
Confidence 444444555555443221 23356788999999999999999999998888776653 2456778999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHc-CCC--------CCchHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHhCCCC
Q 007930 420 VVGRYGEARSSFESAVVKLRAS-GES--------KSAFFGIVLNQMGLACLQLYRI--NEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~-~~~--------~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..|+-..|+..+++.++..... ..+ +......+...++......+++ +.-+++|+.+.++ +
T Consensus 1714 ~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l 1785 (2382)
T KOG0890|consen 1714 QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------L 1785 (2382)
T ss_pred hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------c
Confidence 9999999999999999764432 111 0011122334444444455553 3456777888877 5
Q ss_pred CchHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATY 502 (584)
Q Consensus 489 ~~~~~~~~~la~~~ 502 (584)
|..-..++.+|.-|
T Consensus 1786 ~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1786 PEWEDKHYHLGKYY 1799 (2382)
T ss_pred ccccCceeeHHHHH
Confidence 54445556666433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=56.74 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT----------LGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.++..-|+-++..|+|++|...|..|+...+.+.-.+.|.. ...+.+.+.|+...|++-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777888999999999999999999998887765444432 23578889999999999999999999998
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 521 VREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
. +|.+..+++.-|.+....=+..+|. ..+..+++.+|....
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPSLAS 299 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChhhHH
Confidence 7 9999999999999999999999998 889999988876443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00077 Score=56.94 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=82.2
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-----CCchHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC-----HLDTLGVY 495 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 495 (584)
...+++|++.|.-|+-.....+.. +...+.++..+|++|...|+.+....++++|++.+.+..... .-+...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788999888888776555443 346788999999999999999999999999999888876532 22446789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+|.+..+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999884
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00035 Score=60.52 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+.-+-.-|+-|++..+|..|+..|.+.+... ..++...+..|.+.+-+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 56667778999999999999999999999764 4445555577999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (584)
+|....+++.-|.|++.+.++.+|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999999877644
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=57.77 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
..-|..++.-.+|..|+..|.+++.+ +|..+..+.+.+.++++..+++.+..-..+++++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 34566777778899999999999985 5667788999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
+..++.+|.+......+++|+..+.++..+.+...
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999877643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0084 Score=54.74 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHcCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV---VGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..+..++-..|....+|+.-+.+.+..-.+ +... ......+....|.++.+ .|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~------ 211 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES------ 211 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc------
Confidence 456667777889999998888777654433 2110 11223455677888888 89999999999887553
Q ss_pred CCCchHHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQL---------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
.....+.++..+|.+|-.. ...++|+..|.++.++ .++. ..-.|++.++...|...+...-
T Consensus 212 -~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 212 -DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EPDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred -cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cccc-cchHHHHHHHHHcCCcccchHH
Confidence 1223457888888888643 2356677777777666 3332 3446777788888876555555
Q ss_pred HHHHHHHHHHHhC----CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 515 LEYILKVREEKLG----TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 515 ~~~a~~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.++....+....| .+....-+.+..++++..-.|++++|. ..++.++...|+
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l~~~ 337 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCc
Confidence 5554433333332 223344566778889999999999999 888887766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.042 Score=53.23 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH-----HHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEI-----QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
.|..++......-.++-|...|-++-.. .+++ .....--...+.+-..-|+|++|.+.|-.+-+..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 3777777777666777777666554221 1110 0000111234555566688888888875542211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKG 308 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (584)
.-..++...|+|-...++++.. ....++.....++.++|..+..+..+++|.++|.+.
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1123344555555544444321 011234455667777788777777777777777664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0025 Score=52.21 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHH
Q 007930 263 EHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342 (584)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 342 (584)
+-++.-++..+.......+..++..+|..|...|++++|++.|.++.+.... .......+..+..+....+++..
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444444455556777889999999999999999999999998776322 34567778888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
...++.++-..... +.+..........-|..+...++|.+|...|-.+...+
T Consensus 92 v~~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 92 VEKYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999998876 44444445555666777788899999998887765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=44.08 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++..+|.+|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8999999988875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.078 Score=53.91 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
+|..+|.+....|...+|++.|-++- + ...|.....+..+.|.|++-+.++..+.+...+..
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikad----------D---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----- 1167 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD----------D---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----- 1167 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcC----------C---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-----
Confidence 35666666666666666666554431 1 22344444555566666666666655544333221
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
+-..+...|.+.++..+-.+++. .+..+.+ ...|.-++..|.|+.|.-+|...
T Consensus 1168 ----id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~v----------- 1220 (1666)
T KOG0985|consen 1168 ----IDSELIFAYAKTNRLTELEEFIA-----------GPNVANI-QQVGDRCFEEKMYEAAKLLYSNV----------- 1220 (1666)
T ss_pred ----chHHHHHHHHHhchHHHHHHHhc-----------CCCchhH-HHHhHHHhhhhhhHHHHHHHHHh-----------
Confidence 11223334444444444333321 2222222 34555666666666555444332
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.-+..|+..+..+|+|..|....+++-.. .+|...+......+.+.-|.-+
T Consensus 1221 -----SN~a~La~TLV~LgeyQ~AVD~aRKAns~--------------ktWK~VcfaCvd~~EFrlAQiC---------- 1271 (1666)
T KOG0985|consen 1221 -----SNFAKLASTLVYLGEYQGAVDAARKANST--------------KTWKEVCFACVDKEEFRLAQIC---------- 1271 (1666)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhccch--------------hHHHHHHHHHhchhhhhHHHhc----------
Confidence 22345666666677777777666655322 3444444444444444333211
Q ss_pred CCCC-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 400 TPGY-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 400 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
|- -...+.-+-.+...|...|-+++-+..++.++.+-+. ..-.+..+|.+|.+ -++++-.++++-...
T Consensus 1272 --GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsk-ykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1272 --GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSK-YKPEKMMEHLKLFWS 1340 (1666)
T ss_pred --CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 11 0111233445667777888888888888877765332 12345556655543 345554444432221
Q ss_pred HH--HHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 479 VL--EQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 479 ~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
.. .++.. -.+.+..|..+..+|.+-..|+.|.
T Consensus 1341 RvNipKviR--A~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1341 RVNIPKVIR--AAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hcchHHHHH--HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 10 00000 1122345566666666666666554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.9e-05 Score=60.86 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
-+..-|..++...+|..|+..|.+++.+ +|..+..+.+.+.++.++.+++.+....++++++ .|
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 3444566777788999999999999999 9999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+.+..++.+|........+++|+ ..|..+.+.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI-~~Lqra~sl 107 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAI-KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHH-HHHHHHHHH
Confidence 99999999999999999999999 777776543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00083 Score=53.16 Aligned_cols=100 Identities=24% Similarity=0.277 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR----------INEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
|+.|.+.++..... +|..+..+++-|.++..+.+ +++|+.-|++|+.+ +|+...
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 45556666655543 34456777887777776533 45566666666666 899999
Q ss_pred HHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 494 VYSNLAATYDALGR----VEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 494 ~~~~la~~~~~~g~----~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
+++.+|.+|...+. ..+|..+|++|...+++.... +|.+......|
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~-~P~ne~Y~ksL 120 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE-DPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHH
Confidence 99999999987653 345555555555555443321 56554433333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.05 Score=54.24 Aligned_cols=282 Identities=15% Similarity=0.071 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007930 174 LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQA-----MQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248 (584)
Q Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 248 (584)
...|..+++.+.+. ....+...+|.+|..- .+.+.|+.+++.+.......... ....+.+.+
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~---~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK---GLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh---cCCccccHH
Confidence 45677777776655 3456666777776544 68999999999998721111000 011247788
Q ss_pred HHHHHHhc-----cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 249 ALVYEAKA-----DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC---RFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 249 ~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
|.+|.... ++..|+.++.++... ....+.+.+|.++..-. ++..|.++|..|...
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------- 357 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------- 357 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------
Confidence 88888753 678899999887542 34456678888888655 567899999888764
Q ss_pred ccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 395 (584)
....+...++.+|.. .-+...|..++.++.+.. + ..+...++.++... +.++.+.-.+....+
T Consensus 358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 456677888888864 347889999999998763 1 22333344433322 666666655554443
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVV----GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRIN 467 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 467 (584)
..-+... ..+..+.......... .+...+...+.++... ....+...+|.+|..- .+++
T Consensus 426 ~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 426 LGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred hhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence 3222100 0011111111111111 1344455555554431 1246777888888754 4699
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHHH
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-G--RVEDAIEILEYILKV 521 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~ 521 (584)
.|...|.++... . +...+++|.++..- | ....|..+|.++.+.
T Consensus 493 ~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 999999999876 3 78899999998752 1 267888888888774
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.6e-05 Score=42.35 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|++++++ +|++..++++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.021 Score=46.06 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.++..+...|++++|+..++.++..-. +......+-.+++.+...+|++++|+..+..... +....
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~ 159 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAA 159 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHH
Confidence 344444445555555555544443111 1112233334445555555555554444433221 11222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
......|.++...|+.++|+..|+++++.
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33334455555555555555555555443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0027 Score=53.68 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=81.2
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-----CCCchHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE-----SKSAFFGIVLN 454 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 454 (584)
...+++|++.|.-|+-...-....+...+.++..+|++|...|+.+....++++|++.+..... ........+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3467889999998888776665566678899999999999999988888888888887765421 11223467888
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 455 QMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+|.+..+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999885
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0036 Score=54.58 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
+.+...+..+..-|.-|++..+|..|+..|.+.+.. ..+ ++...+..|.+.+-+....|+|..|+.-..+++.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~--D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCA--DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCC--CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344456777778899999999999999999999874 222 34456889999999999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999998887764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.062 Score=50.68 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHhh------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 448 FFGIVLNQMGLACLQL------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
..+.++..+|...... +..+++...|.++.++ +|....+++.+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 3466777778777777 8899999999999998 788888899888877654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.095 Score=52.57 Aligned_cols=230 Identities=20% Similarity=0.123 Sum_probs=138.1
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 007930 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNI 291 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 291 (584)
..+++.+|.....+.++..|+.. .+...-|.+..++|+.++|..+++.. .. ........+..+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-----~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEAL-YG-----LKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhh-cc-----CCCCchHHHHHHHHH
Confidence 56788999998888888765443 23556778889999999999666532 21 222345567778899
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 007930 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371 (584)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 371 (584)
|..+|++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+.--+..+.. +..+ ...|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~---yyfWs 149 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRA---YYFWS 149 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----Cccc---chHHH
Confidence 99999999999999999887 566 6667777778888887766443333333332 2222 22344
Q ss_pred HHHHHHHHhcCHHHHHH-----HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 372 EISAIYEALNEHEEALK-----LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.+..+.......++... +-++..+..-...|.-...+.+. ..-.++..+|++++|.+.+..-+. ... .
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l----~ 222 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL----T 222 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc----c
Confidence 44444444444333332 12222222222223222223332 234566788999999998854332 111 1
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.............+...+++.+-.+...+.+..
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 112233334456667778888877777777765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0035 Score=51.37 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
...+..++..+|..|...|++++|++.|.++.+.... .-....++..+..+....+++.....++.++.......
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 4567789999999999999999999999998775432 23446678888999999999999999999998888887
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
++..........-|..+...++|.+|...|-.+...
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 776666666777788888899999999998887654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0044 Score=58.28 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
|..+...|+...|+.++..|+.... ...-..+.+++.+....|-.-.|-.++.+++.+ ....+-.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl~ 678 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPLT 678 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCchH
Confidence 4445668999999999999987522 222345778999999999999999999999998 4445567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++.+|+.|..+.+.+.|++.|++|++. +|++..+...|-.+-+
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC 721 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence 889999999999999999999999997 6666666665555544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=52.57 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV---EDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
++.|.+.++..... +|..++.+.+.|.++..+.++ .++.+++++++.-+++.+.- +|+..++++.+|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 56677777777776 888899999999988776444 23444444444444333322 7999999999999
Q ss_pred HHHHhch-----------HHHHHHHHHHHHHhhhhhhh
Q 007930 543 LLKETGR-----------ARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 543 ~~~~~g~-----------~~~A~~~~l~~~~~~~~~~~ 569 (584)
+|..++. +++|. .+++.+.+.+|+..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT-H
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCCcH
Confidence 9998875 44555 67777777777643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00024 Score=39.80 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+++++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 368999999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.7e-05 Score=41.24 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
+|++++++ +|+...++++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.072 Score=50.15 Aligned_cols=413 Identities=14% Similarity=0.054 Sum_probs=205.6
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
..+|..+..+..+.+.+..+ . +++..+.|++.+..+ |....++.......+...+|+.-..+|.+++.-
T Consensus 14 e~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 47888899999998887666 6 899999999988753 334556666677778889999999999998865
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---------HHHhCC
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA---------HIQAMQ 215 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---------~~~~g~ 215 (584)
.-. ..++ -..+..+....|+...+....-++.+......| -++....+|...+.. +..+.+
T Consensus 83 vLn--------lDLW-~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 83 VLN--------LDLW-KLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred Hhh--------HhHH-HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 321 1101 122344445566666666666666666555444 223333333333322 222234
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL 295 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 295 (584)
.+.....|++++..- ..++-.++..-..|++.+....-- + .+--..
T Consensus 153 I~~vRriYqral~tP--------------m~nlEkLW~DY~~fE~~IN~~tar-K-------------------~i~e~s 198 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTP--------------MHNLEKLWKDYEAFEQEINIITAR-K-------------------FIGERS 198 (656)
T ss_pred HHHHHHHHHHHhcCc--------------cccHHHHHHHHHHHHHHHHHHHHH-H-------------------HHHhhC
Confidence 445555666665321 223333333333333333222100 0 011112
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCC----cc------cHHHHHHHHHHHHHHc------ccH--HHHHHHHHHHHHHHhcC
Q 007930 296 CRFDEAIFSYQKGLTVFKATRGED----HL------SVASIFIRLADLYYRI------GKL--RESKSYCENALRVCAKP 357 (584)
Q Consensus 296 g~~~~A~~~~~~al~~~~~~~~~~----~~------~~~~~~~~la~~~~~~------g~~--~~A~~~~~~al~~~~~~ 357 (584)
..|..|...+++...+.+...-.+ .+ .....|.++...-... |.. ..-.-.+++++....-.
T Consensus 199 ~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~ 278 (656)
T KOG1914|consen 199 PEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH 278 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 223333333333333222111000 00 0011111111111000 000 01112234444332110
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc---cHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHE-------EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG---RYGEA 427 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 427 (584)
..-..+....+...+.++...|+.. ++..+|++++...... ....++.++..-...- +++..
T Consensus 279 --peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 279 --PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred --HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhh
Confidence 0001122334444556666666644 5555555555443221 1222333333222222 25555
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcC
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA-TYDALG 506 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g 506 (584)
..++++.+.+... ....++..+-..-.+..-.+.|...|.+|-+. +..+. .++..-|. -|..++
T Consensus 351 ~~~~~~ll~~~~~-------~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~------~r~~h--hVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 351 HEIYNKLLKIEDI-------DLTLVYCQYMNFIRRAEGLKAARKIFKKARED------KRTRH--HVFVAAALMEYYCSK 415 (656)
T ss_pred HHHHHHHHhhhcc-------CCceehhHHHHHHHHhhhHHHHHHHHHHHhhc------cCCcc--hhhHHHHHHHHHhcC
Confidence 5666666654322 12344555555555556677788888877764 11121 22222222 245678
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 507 RVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 507 ~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+.+-|...|+-.+.. +++...........+..+++-..+. ..++.++..
T Consensus 416 D~~~AfrIFeLGLkk--------f~d~p~yv~~YldfL~~lNdd~N~R-~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKK--------FGDSPEYVLKYLDFLSHLNDDNNAR-ALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHhCcchhHH-HHHHHHHhc
Confidence 889999999888876 4555555555667778888888888 777777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=52.61 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....|..+|.+..+.|...+|++.|-++ ++| ..|..........|.|++-+.++.-+-+..++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------dDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--- 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--- 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC---
Confidence 3467789999999999999999998874 233 23777888889999999999988777655322
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
|. +-..|..+|.+.++..+-.+... +++. + -....|.-++..|.|+.|.-.|...
T Consensus 1166 ---~~---id~eLi~AyAkt~rl~elE~fi~----------gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1166 ---PY---IDSELIFAYAKTNRLTELEEFIA----------GPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred ---cc---chHHHHHHHHHhchHHHHHHHhc----------CCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 11 11233445556666555433321 1111 1 1345666666777777666555432
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--HHH---------------hhcCCcccHHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV--FKA---------------TRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~ 336 (584)
.-+..++..+..+|+|..|....++|-.. +++ +.|-+-...+.-+-.+...|..
T Consensus 1221 ---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1221 ---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 22345666666677777776666655322 111 1222222334455667788888
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
.|-|++-+..++.++-+-+. ....+..||.+|.+- ++++-.++++
T Consensus 1292 rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999988888776433 234566677666543 4444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.012 Score=46.96 Aligned_cols=108 Identities=20% Similarity=0.166 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh-------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-------------LAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
+...|......|+.+.++..+++++.+.....-++.+ ...+.+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344555566777788888888888776432221111 112245677888899999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 185 LEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
+.. +|..-.++..+..++...|+..+|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.035 Score=44.80 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChH---HHHHHHHHHHHHHHHH-----------hCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 162 MQLGDTCSSMGLLD---RSVWCYESGLEIQIEA-----------LGDS--DPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 162 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~-----------~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
...|+-|+...+.+ +|-..|+++++....- ...+ ...-..+...++..+...+++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455565554444 6666777766654211 0001 111223455678889999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
++.... +....+.+-..++.+...+|.+++|+..+... .++...+......|.++...|+-++|...|
T Consensus 115 ~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 115 ALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred HHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHHhhhHHHHcCchHHHHHHH
Confidence 885433 22334556788999999999999999888743 234455666678999999999999999999
Q ss_pred HHHHHH
Q 007930 306 QKGLTV 311 (584)
Q Consensus 306 ~~al~~ 311 (584)
+++++.
T Consensus 183 ~kAl~~ 188 (207)
T COG2976 183 EKALES 188 (207)
T ss_pred HHHHHc
Confidence 999987
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.15 Score=51.25 Aligned_cols=192 Identities=16% Similarity=0.106 Sum_probs=117.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
.....++ +.+|+....+.++. +|+...+...-|..+.++|++++|..+++.. ... ...+. .
T Consensus 18 d~ld~~q-fkkal~~~~kllkk---------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~----~~~D~----~ 78 (932)
T KOG2053|consen 18 DLLDSSQ-FKKALAKLGKLLKK---------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL----KGTDD----L 78 (932)
T ss_pred HHhhhHH-HHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC----CCCch----H
Confidence 3456677 88888888887774 4555556667788999999999999665543 221 12222 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
++..+-.+|..++++++|..+|++++.. .|. -+.+..+-.+|.+.+.|.+-.+.--+..+..|+...
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y---- 145 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY---- 145 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc----
Confidence 4777889999999999999999999988 566 677777888888888887655544333333333221
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHH-HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 240 EEAADRRLMALVYEAKADYESALE-----HLVLASMVM-IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~-----~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
..|..+..+.......+.... +-++..+.. ...|.-...+++. ..-.++..+|++++|.+.+..
T Consensus 146 ---yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 146 ---YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ---hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 124444444444444443333 112221111 1122222222222 223456678999999998844
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.11 Score=49.11 Aligned_cols=271 Identities=10% Similarity=0.005 Sum_probs=152.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 121 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
....+...++.+. +...+++........+... ..+.-+..+...|+.+.|+..++.+++... ..-..
T Consensus 237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~ga~-----wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~ 303 (546)
T KOG3783|consen 237 FISFVLGTPNPDG--EECEKALKKYRKRYPKGAL-----WLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKS 303 (546)
T ss_pred HHHHHcCCCCccH--HHHHHHhHHHHHhCCCCcc-----HHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHH
Confidence 3344444555544 3444444444333322222 145567777788888889999988887322 23445
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA--------KADYESALEHLVLASMVM 272 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~ 272 (584)
-+++.+|.++..+.+|..|-..+....+...- ..+..-+..|.++.. .|+-+.|..+++......
T Consensus 304 l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-------S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~ 376 (546)
T KOG3783|consen 304 LMVFERAWLSVGQHQYSRAADSFDLLRDESDW-------SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-------hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence 67889999999999999999998887766432 222222233333322 234455544444444333
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH--HHHHHHHHHHHc--ccHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS--IFIRLADLYYRI--GKLRESKSYCE 348 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~ 348 (584)
...+.....-. -..+++-+. ..... -.+.... .+..++.++..- ...++..
T Consensus 377 ~~a~K~~P~E~-------------------f~~RKverf-~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~---- 431 (546)
T KOG3783|consen 377 ANAGKNLPLEK-------------------FIVRKVERF-VKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE---- 431 (546)
T ss_pred HhccccCchhH-------------------HHHHHHHHH-hcccc-ccccccccchHHHHHHHHhhcccCChhhHH----
Confidence 33221111100 011111111 11100 0000111 123333332211 1122222
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-HHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-YGEA 427 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 427 (584)
+......... -++..+..--+..+|.++...|+...|..+|...++.......+......+++.+|.++..+|. ..++
T Consensus 432 k~~~~~~~~~-~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~ 510 (546)
T KOG3783|consen 432 KMRAELENPK-IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEA 510 (546)
T ss_pred HHHHHHhccC-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHH
Confidence 2222222211 2244556667788999999999999999999998876555545667778899999999999999 9999
Q ss_pred HHHHHHHHHH
Q 007930 428 RSSFESAVVK 437 (584)
Q Consensus 428 ~~~~~~a~~~ 437 (584)
..++.+|-+.
T Consensus 511 ~~~L~kAr~~ 520 (546)
T KOG3783|consen 511 RALLLKAREY 520 (546)
T ss_pred HHHHHHHHhh
Confidence 9999998874
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00052 Score=38.38 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+.+++++|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=39.04 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+++.+|.++..+|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.047 Score=54.42 Aligned_cols=282 Identities=16% Similarity=0.128 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK-----ADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
...|..+++.+-+... ......+|.+|..- .+.+.|+.++..+...+..... .....+.+.+|.
T Consensus 228 ~~~a~~~~~~~a~~g~----------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~-~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT-KGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcc----------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh-hcCCccccHHHH
Confidence 4566777766654322 23366677776654 6899999999988762111111 112335678899
Q ss_pred HHHHcC-----ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 291 IYMSLC-----RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG---KLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 291 ~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+|.... ++..|..+|.++.+. ....+.+.+|.++..-. +...|.++|..|....
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-------- 358 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-------- 358 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--------
Confidence 998743 667788888888765 44567788888887655 5789999999987653
Q ss_pred hHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 007930 363 PEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVK 437 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 437 (584)
...+.+.++.+|..- -+...|..++.++.+... ..+...++.++... +++..+...+......
T Consensus 359 ---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~---------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 359 ---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN---------PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred ---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC---------hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 246778888887653 478899999999877641 11222344443322 6666666555544443
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----CChH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL----GRVE 509 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~ 509 (584)
-.+ .....+..+.......... .+...+...+.++... ....+...||.+|..- .+++
T Consensus 427 g~~----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 427 GYE----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred hhh----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence 211 1111111111111111111 2445556666555443 4456788899988765 4589
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-c--hHHHHHHHHHHHHHhh
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-G--RARNRKGKSLENLLDS 564 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~l~~~~~~ 564 (584)
.|...|.++... + ....+++|.++..- | +...|+ .++..+...
T Consensus 493 ~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~-~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAK-RYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHH-HHHHHHHhc
Confidence 999999999874 3 78899999988742 1 245666 555555443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0062 Score=43.93 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=68.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSA-SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
....|+|.+|.+.+.+.++......... ......++..+|.++...|++++|+..+++++.+.++.++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999887776432 124455688899999999999999999999999999999988887777766
Q ss_pred HHHH
Q 007930 289 GNIY 292 (584)
Q Consensus 289 a~~~ 292 (584)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00063 Score=38.53 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 117 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
++..||.+|...|+|++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998877643
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0083 Score=43.26 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=61.7
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQEN---EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
....|+|.+|++.+.+............ ....+..++|.++...|++++|+..+++++++.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4567999999999999988877666655 5677788999999999999999999999999998865 3333444444
Q ss_pred HHHH
Q 007930 329 RLAD 332 (584)
Q Consensus 329 ~la~ 332 (584)
.+..
T Consensus 86 ~~~~ 89 (94)
T PF12862_consen 86 WLAN 89 (94)
T ss_pred HHHH
Confidence 4433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.16 Score=46.88 Aligned_cols=138 Identities=11% Similarity=-0.002 Sum_probs=82.6
Q ss_pred CcccHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATE--LFEEARGV 479 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~ 479 (584)
+...++..+..-|.-+.+.|. -++|+..++.++... +.+ ..+.+ ..... -...|.+|+. .+-+.+.+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-------~yD-~ec~n-~v~~f-vKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-------NYD-IECEN-IVFLF-VKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-------ccc-HHHHH-HHHHH-HHHHHHHHHhhhhHHHHHHH
Confidence 344556666677888888887 788888888888752 111 11111 11111 1122333332 22233332
Q ss_pred HHHHhC----CCCCchHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 480 LEQECG----SCHLDTLGVYSNLA--ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 480 ~~~~~~----~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
..-+.. +-.....+....|+ ..++..|++.++.-+-.-..++ .| ...++..+|.++....+|++|
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHH
Confidence 211111 12223334444444 4567899999999888888887 77 678999999999999999999
Q ss_pred HHHHHHH
Q 007930 554 KGKSLEN 560 (584)
Q Consensus 554 ~~~~l~~ 560 (584)
. .++..
T Consensus 515 ~-~~l~~ 520 (549)
T PF07079_consen 515 W-EYLQK 520 (549)
T ss_pred H-HHHHh
Confidence 9 55544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.011 Score=52.97 Aligned_cols=136 Identities=12% Similarity=0.098 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
+|..+.....+.+..+.|...|.+|.. .......+|...|.+-+. .++.+.|..+|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 356666777777889999999998853 344456678888888666 56666699999999988 456
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
....+......+...|+.+.|..+|++++..... ......+|......-...|+.+......+++.+..+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6677777778889999999999999999876422 1214567777888888899999999999988887665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=37.54 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
++..||.+|...|++++|+++|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999997766543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=37.06 Aligned_cols=29 Identities=34% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+++.+|.++...|++++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.02 Score=51.38 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ-LYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
+|..+.....+.+..+.|..+|.+|.. .......+|...|.+... .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 455667777888889999999999974 222334678888888666 56666699999999998 5
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+.....+......+...|+.+.|..+|++++... . ........+......-...|+.+... +..+...+.-++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 6666778888889999999999999999998751 1 11113467778888888889887776 555555544444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.031 Score=48.46 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..-+.-....|++.+|...+..++...++. ..+...++.+|...|+.+.|...+...=.-.. ....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~~ 203 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKAA 203 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhHH
Confidence 344556678899999999999999988776 45666899999999999999888765322110 0001
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+...-.++.+.....+... +++.+.. +|+...+.+.+|..+...|+.++|.+.+-..+.. -.+..+
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d 271 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFED 271 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccC
Confidence 111111122333333332222 2222332 7888899999999999999999999887666554 223222
Q ss_pred hhHHHHHHHHHHHHHHhchHHHH
Q 007930 531 PDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
..+...|-.++...|.-+.+
T Consensus 272 ---~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 272 ---GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred ---cHHHHHHHHHHHhcCCCCHH
Confidence 23444555555555544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.33 Score=46.99 Aligned_cols=183 Identities=14% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 205 YLAEAHIQAMQFDEAENLCKKI------LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
.+|.++...|+|.+|.++|.+. ++++.+.. .+..+.-+...|.-++-....++-.........+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlR----------MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLR----------MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 4678888899999999988653 33333222 4455566666666666555555544433333322
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSY------QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
. .-|.++...|+.++|+... +-++++.+++ +......+..++..+.....+.-|-+.|.+.-+
T Consensus 707 k-------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 707 K-------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred H-------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 2 2345666778888877653 2334443332 223334444455555555555555555544322
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007930 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432 (584)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (584)
. ..+..++...+++++|....++--+.. ..++.-.|..+....++++|.+.|.
T Consensus 776 ~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~----------~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 776 L-----------------KSLVQLHVETQRWDEAFALAEKHPEFK----------DDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred H-----------------HHHhhheeecccchHhHhhhhhCcccc----------ccccchHHHHhhhhhhHHHHHHHHH
Confidence 2 123345566677777765544322222 2234455666677777777776666
Q ss_pred HHH
Q 007930 433 SAV 435 (584)
Q Consensus 433 ~a~ 435 (584)
+|-
T Consensus 829 kAG 831 (1081)
T KOG1538|consen 829 KAG 831 (1081)
T ss_pred Hhc
Confidence 543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=36.25 Aligned_cols=29 Identities=38% Similarity=0.645 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++..+|.+|..+|++++|..+|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999999998
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.21 Score=48.26 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=102.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH-----HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI-----DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
..++.++...|++.+|.+.|.+. +......+. .+..+.-+...|..++-....++-.+-..... .
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~-------G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---e 705 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRS-------GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---E 705 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHc-------CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---C
Confidence 35677777788888887777642 111111111 13344445555555544444444333322221 2
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHH------HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYC------ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
|. .-|.++...|+.++|+... +-++++..+.. ....+.+..++..+.....+.-|.+.|.+.-
T Consensus 706 Pk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 706 PK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred cH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 22 1356677778888877643 33444444321 1122344445555555555555555554432
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.. ..+..++...+++.+|....++ .+.....+++..|+.+....++++|.+.|.
T Consensus 775 D~---------------ksiVqlHve~~~W~eAFalAe~-----------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 775 DL---------------KSLVQLHVETQRWDEAFALAEK-----------HPEFKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred cH---------------HHHhhheeecccchHhHhhhhh-----------CccccccccchHHHHhhhhhhHHHHHHHHH
Confidence 21 1345667778888888776654 334445677777888888888888888886
Q ss_pred HHHH
Q 007930 475 EARG 478 (584)
Q Consensus 475 ~a~~ 478 (584)
+|-+
T Consensus 829 kAGr 832 (1081)
T KOG1538|consen 829 KAGR 832 (1081)
T ss_pred Hhcc
Confidence 6543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0033 Score=35.03 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.++..+|.+|...|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999876
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.52 Score=46.15 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh---hhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA---LAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
...+..++......-.++-|...|-+.-... |.... .....--...+.+-..-|+|++|...|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 3455577887777777777777776542211 00000 000001123445555567888887776443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.29 Score=43.04 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
.-...++++.++++.+..... ......+...+|..|...|++++|+.+|+.+...++..+=......++..+..|+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 445668888888888887763 455566788999999999999999999999988888777777888888999999999
Q ss_pred cCChhHHHHHHHHH
Q 007930 295 LCRFDEAIFSYQKG 308 (584)
Q Consensus 295 ~g~~~~A~~~~~~a 308 (584)
.|+.+..+.+.-+.
T Consensus 231 ~~~~~~~l~~~leL 244 (247)
T PF11817_consen 231 LGDVEDYLTTSLEL 244 (247)
T ss_pred hCCHHHHHHHHHHH
Confidence 99998877765543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.13 Score=44.68 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
....+..+......|+ +.+|...+..++.. .++...+...++.+|...|+.+.|...+...-...
T Consensus 134 ~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~---------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----- 198 (304)
T COG3118 134 EEEALAEAKELIEAED-FGEAAPLLKQALQA---------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----- 198 (304)
T ss_pred HHHHHHHhhhhhhccc-hhhHHHHHHHHHHh---------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-----
Confidence 3445667778888999 99999999999986 33346677789999999999999998887632111
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
.......+.... ..+.......+... +++.+.. +|+...+-+.+|..+...|+.++|.+.+-..++..
T Consensus 199 ~~~~~~~l~a~i---~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 199 QDKAAHGLQAQI---ELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred hhhHHHHHHHHH---HHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 011100001111 22222222222222 1222222 68888999999999999999999999887777665
Q ss_pred HHh
Q 007930 231 REH 233 (584)
Q Consensus 231 ~~~ 233 (584)
...
T Consensus 267 ~~~ 269 (304)
T COG3118 267 RGF 269 (304)
T ss_pred ccc
Confidence 443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.024 Score=37.89 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
+...++.|.-++...+ .++|+..+.++++... ..++...++-.+..+|...|+|.+.+.+..+-+++.....+
T Consensus 6 ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4456677888888888 8999999999998733 45678888999999999999999999998888877765443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.48 Score=43.57 Aligned_cols=198 Identities=15% Similarity=0.033 Sum_probs=142.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
|-+-....+..+..+.++....++..|...+.+.+-.+.... .......++..++.++...+.--.+..+.-.++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~--~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGC--NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 333345567777889999999999999999998876655444 445667778888888888888888888877777777
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc-----HHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS-----VASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.+...+...+..-..++..+...|..+.|...+..++....-.++-+... .+.++..-+..+ ...+.+.+.+++
T Consensus 344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 77777777777778899999999999999999999998765544432111 111111111112 556788888888
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE---ALKLLQKAMKL 396 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~ 396 (584)
+++-....+ -+-+..+.++.+.++..|-..|+.++ +...|+++...
T Consensus 423 ~~A~~~f~k---L~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~ 471 (482)
T KOG4322|consen 423 DLAQSIFYK---LGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRY 471 (482)
T ss_pred HHHHHHHHH---ccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 888888876 34556678888899999999998654 44455555443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0037 Score=57.63 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
-+-+.-.+..++++.|+..|.+++++ .+..+..+.+.+.++...+++..|+.-+.+|++. .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 35567778889999999999999995 5556777888889999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
..+|+.-|.+....+++.+|...|+....+ .|+...+...+.++-...
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECNKIV 119 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 788777777777665443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0025 Score=58.69 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDI 533 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~ 533 (584)
-.-+.-.+.-+.++.|+..|.+|+++ +|+.+..+.+.+.++.+.+++..|+.-+.+++++ +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34455667778999999999999999 8988888899999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 534 DDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
..++++-|.....++++.+|. ..++......|+...
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPNDPD 107 (476)
T ss_pred hheeeeccHHHHhHHHHHHHH-HHHHHhhhcCcCcHH
Confidence 999999999999999999999 777777666665443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.27 Score=46.97 Aligned_cols=98 Identities=15% Similarity=-0.016 Sum_probs=78.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
|..+...|+...|+.++..|+.. .|. ....+.+||.+....|-..+|-.++.+++.+ ....+-
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~--------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNL--------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhcc--------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCch
Confidence 44445679999999999999887 222 2235678999999999999999999999998 333456
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
..+.+|+.+..+.+.+.|+ ..++.+++..++.+.-
T Consensus 678 ~~~~~g~~~l~l~~i~~a~-~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGAL-EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHhcchhHHHHhhhHHHH-HHHHHHHhcCCCChhh
Confidence 6888999999999999999 8889898877765443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0048 Score=34.06 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
++++.+|.++...|++++|...|+++++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999987
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0014 Score=57.38 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
.+..|.+++|++.|..++++ +|..+..+...+.++.+++++..|+..+..++.+ +|+.+.-+-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccch
Confidence 34568899999999999999 9999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 540 LAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 540 l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
-+.....+|+|.+|. .+|..+...+-+.....
T Consensus 188 rg~A~rllg~~e~aa-~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAA-HDLALACKLDYDEANSA 219 (377)
T ss_pred hhHHHHHhhchHHHH-HHHHHHHhccccHHHHH
Confidence 999999999999999 88888887655544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.35 Score=38.33 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=98.8
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 332 DLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
.-|+..+.-.++-..|..++++. ..+..++|+..|.... ...++..+.+ ..
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~le---ktg~g~YpvL--A~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLE---KTGYGSYPVL--AR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHH---hcCCCcchHH--HH
Confidence 34555555566666666666554 3355677777665432 2333444533 44
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF--GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
...+.+....|+...|+.+|.++-.-. ..|.. -.+...-+.++...|-|+.-.. ..+.+.++.+|
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 578999999999999999999876521 11111 2334445666777787766443 34444566788
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
....+...||..-.+.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888999999999999999999999998876
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=32.47 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 535 DEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++++.+|.++...|++++|. ..++.+++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcCC
Confidence 46889999999999999999 9999999887753
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.39 Score=44.78 Aligned_cols=158 Identities=16% Similarity=0.044 Sum_probs=114.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC--------------------CCchhHHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG--------------------SGQELELVMSLHMLAAI 124 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~~~~l~~~ 124 (584)
..+|-.++.+++++.++..+|+ .+.|.++.++|+-.+++... ...+.....+++.....
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4688899999999999999999 99999999999987774321 11234456777788888
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
..+.|-+..|.++.+-.+.+.+ ..+|.. +++.+-....+.++|+--+.+++.......+ ..........+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp----~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~---~~~~~lPn~a~ 182 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDP----DEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYR---NWLSLLPNFAF 182 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCC----CCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh---hhhhhCccHHH
Confidence 8999999999999999888753 224432 3566666667778888777777765542100 00001234556
Q ss_pred HHHHHHHHhCCH---------------HHHHHHHHHHHHHHHHh
Q 007930 205 YLAEAHIQAMQF---------------DEAENLCKKILEIHREH 233 (584)
Q Consensus 205 ~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 233 (584)
..+.++...++- ++|...+.+|+...|..
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 677788888887 89999999999988754
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.24 E-value=1 Score=41.94 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH--HHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNE-HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS--SFESAVV 436 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~ 436 (584)
..+....+.-+..-|.-++..|. -++|+..++.+++..+... .+. +... .+-...|.+|+. .+.+.+.
T Consensus 372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec~-n~v~-~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------ECE-NIVF-LFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HHH-HHHH-HHHHHHHHHHHhhhhHHHHHH
Confidence 44556677778888888999987 7889999988887654331 111 1111 111112333322 2223333
Q ss_pred H---HHHcCCCC-CchHHHHHHHH--HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 437 K---LRASGESK-SAFFGIVLNQM--GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 437 ~---~~~~~~~~-~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+ ..+.|-.. ........+.+ |..++.+|+|.++.-+-.=..++ .| ...++..+|.+.....+|++
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHH
Confidence 2 22222211 11122334444 45567899999999888877777 77 56899999999999999999
Q ss_pred HHHHHHH
Q 007930 511 AIEILEY 517 (584)
Q Consensus 511 A~~~~~~ 517 (584)
|..++..
T Consensus 514 A~~~l~~ 520 (549)
T PF07079_consen 514 AWEYLQK 520 (549)
T ss_pred HHHHHHh
Confidence 9998875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=32.79 Aligned_cols=36 Identities=33% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
+++..||.+-...++|++|+.-|++++++.++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999999999998887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=40.94 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=118.3
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
..+++..+...+.++-.. ........++.+|.. ..+..+|..+|..+.+. .....
T Consensus 53 ~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~a 111 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAEA 111 (292)
T ss_pred ccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHHH
Confidence 455666677666665542 112556666776654 34578888888854433 23457
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-------RYGEARSSFESAVVKL 438 (584)
Q Consensus 370 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~a~~~~ 438 (584)
.+.+|.+|.. ..+..+|..+|+++...-.. .. ......++.+|..-. +...|...|.++....
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 7789998887 44899999999998775322 11 233556777776542 2336777887777642
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--------
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG-------- 506 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------- 506 (584)
...+...+|.+|.. ..++.+|..+|+++.+. .. ....+.++ ++...|
T Consensus 186 ----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 186 ----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred ----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 35678888988865 34899999999999986 22 67888888 666666
Q ss_pred -------ChHHHHHHHHHHHH
Q 007930 507 -------RVEDAIEILEYILK 520 (584)
Q Consensus 507 -------~~~~A~~~~~~a~~ 520 (584)
+...|..++..+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred cccccCCCHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.2 Score=40.85 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=97.9
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
+....++.+|...-+..+.-........-......+|+.+..+|...|+...-...+...+... .++.+....+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHH
Confidence 3346889999888777665432222222223344678888888988898776666665555443 33445556667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.|-..|...+.|+.|.....++. +|... .+...++.++.+|.+..-+++|..|.+++.+|+..
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 78888999999999888776653 22222 33467788899999999999999999999988774
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=3.7 Score=46.36 Aligned_cols=426 Identities=10% Similarity=0.011 Sum_probs=220.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.++.++-...++.+...+-.-+..+............. ..-..++.++...+++.++..+-..+..+...+.. ++..
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~L 870 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREA-FDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPEL 870 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHh-cCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--Chhh
Confidence 34444445555555555444444444333211111111 12346777788888888777777777666655532 2332
Q ss_pred HHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 200 AET--CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 200 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
... -..++.++.-.++|.+...+-.-+..+............+..-..++.++....++.++-.+-.-+..+......
T Consensus 871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~ 950 (2710)
T PRK14707 871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD 950 (2710)
T ss_pred hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc
Confidence 222 234566677777777766666666666555542222222333445667777777776654444444444444444
Q ss_pred cchHHHHH--HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAID--VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.....+ ..+++++..++++.+.-.+-.-+..+...+..+........-..+++++....++.++-.+-.-+..+..
T Consensus 951 d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~ 1030 (2710)
T PRK14707 951 DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAA 1030 (2710)
T ss_pred ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 44443332 4577788888888887776666666655443111111222233456666666666554444444444443
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS-TIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
... .+........-..++.++....+|.+.-.+-.-+..+......+.. ..+..-..++.++...-++.+.-.+-+.+
T Consensus 1031 rLa-~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1031 RLS-NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred Hhc-cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 321 1100011122234566666666665544443333333332211110 01112235677777777888877888888
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+.+...++....+........++.+.-...++.....+=.-+..+..++.....-..+..-..++..+..+.++.+.-.+
T Consensus 1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707 1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence 88887776554444344444555555555555443333333333333333211111122234567777777777777777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
-+-++.+........+|-..-....|+.+.....+
T Consensus 1190 ~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR 1224 (2710)
T PRK14707 1190 RSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR 1224 (2710)
T ss_pred HHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH
Confidence 77777777776666666554444444444443333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0043 Score=54.43 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
+.-.+..|.+++|++.|..++.+ ++..+..+...+.++..+++...|+.-+..++++ +++.+..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 33445678899999999999985 5667889999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+-..+.....+|++++|..+++.++++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999987
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=34.54 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
...-|.-++...+.++|+..++++++... +.++...++..+..+|...|+|.+++.+..+-+++..+..++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44456667788999999999999998843 356778889999999999999999999998888887766543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.077 Score=32.91 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
+.++.+|..+.++|+|++|..+.+.++++ .|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHHHH
Confidence 46789999999999999999999999999 8888776654433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.2 Score=39.49 Aligned_cols=103 Identities=18% Similarity=0.077 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
....+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++.+.+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------- 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------- 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------
Confidence 4456666777777888999999888877766 8888899999999999999999999999997664
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
.|..+.+.-.++.++..+|+.+ ...+-..+++..++..
T Consensus 74 -~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 74 -APGFPYAKALLALCLYALGDPS--WRRYADEVLESGADPD 111 (160)
T ss_pred -CCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcCCChH
Confidence 6777777777888888888754 2233344554444333
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2 Score=41.87 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
-.++.+-|.-.++..+|..+++.|...+.....- ..+...+.....++.||....+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3456677888899999999999999988754322 123345788899999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+|...-....+-.+....|.-++|+....+.......
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 6666667777777888889999999998888776544
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.2 Score=38.71 Aligned_cols=137 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
..-++-++-+.+.++..+..+.......++.++|..|.+.++.+.+.+.+.+.++..-..+ -..+...+...+|.+|.
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhc
Confidence 3445556666666665555555667888999999999999999999999988877654432 13445556667777777
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+.-.++.++.....++. |.++...-..-...|...+...++.+|-.++...+..+...
T Consensus 167 d~~vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 167 DRKVVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred cHHHHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 665556655555554443 44444444444455666777788899988888777665443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.5 Score=40.92 Aligned_cols=151 Identities=16% Similarity=0.036 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC----C---------C---------CcccHHHHHHHHHHHHHHh
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT----P---------G---------YHSTIAGIEAQMGVMLYVV 421 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~---------~---------~~~~~~~~~~~l~~~~~~~ 421 (584)
|..+.++..++.++..+|+...|.+++++|+-..+.. . | .+.....+++.....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 5567899999999999999999999999998665421 1 1 1223445666777888899
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
|-+..|.++.+-.+.+ .+..+| .-++..+-....+.++++--+..++.......+. .....+...+.++.+
T Consensus 117 G~~rTAlE~~KlLlsL----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSL----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA 187 (360)
T ss_pred CcHHHHHHHHHHHHhc----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence 9999999999888775 222222 2345555556667788877777777655421100 000123466788888
Q ss_pred HHHcCCh---------------HHHHHHHHHHHHHHH
Q 007930 502 YDALGRV---------------EDAIEILEYILKVRE 523 (584)
Q Consensus 502 ~~~~g~~---------------~~A~~~~~~a~~~~~ 523 (584)
+...++. ++|...+.+|+..+.
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 8889888 899999999987643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.3 Score=41.26 Aligned_cols=413 Identities=12% Similarity=-0.019 Sum_probs=216.5
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHH
Q 007930 82 ISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGY 161 (584)
Q Consensus 82 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 161 (584)
...++ ..+.+..++.+...+-. .-|..-..|...|..-.+.|..+.+.+.|++++.-.+. .... + .
T Consensus 52 i~~~~-~~~~~~~~r~~y~~fL~-----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~-----Svdl--W-~ 117 (577)
T KOG1258|consen 52 IQEND-SIEDVDALREVYDIFLS-----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL-----SVDL--W-L 117 (577)
T ss_pred HhccC-chhHHHHHHHHHHHHHh-----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-----HHHH--H-H
Confidence 44444 44555555555554331 13455666778888899999999999999999987631 1111 1 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 162 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
..++.+-...|+.+.-...|++|.... |.+ -.....|...-..-..++++..-...|++.+++-......
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~v----G~d-F~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~----- 187 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYV----GLD-FLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR----- 187 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhc----ccc-hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH-----
Confidence 222333335566666666677776653 222 1222334444444466778888888888887753222110
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC------CcchHHHHHH-HHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANG------QENEVAAIDV-SIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
++..-.-+... +...-+-..++.+++..... ........+. .+-.+-...+.++++...+.+...+
T Consensus 188 ---~f~~f~~~l~~-~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~--- 260 (577)
T KOG1258|consen 188 ---HFDRFKQLLNQ-NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI--- 260 (577)
T ss_pred ---HHHHHHHHHhc-CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH---
Confidence 11000000000 00000111111111100000 0000000000 0000000111112222211111111
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
.=.++...-...+.+..++..+...-... .+........|......-...|+++...-.|++++
T Consensus 261 ---------------~~~~~~~s~~~~~kr~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 261 ---------------HEKVYQKSEEEEEKRWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL 324 (577)
T ss_pred ---------------HHHHHHhhHhHHHHHHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH
Confidence 11223333344455555555554332221 11223335667777777888999999999999988
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
--+... ...|...+......|+.+-|...+..+.++... ....+...-+......|++..|...++
T Consensus 325 i~cA~Y-------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-------~~~~i~L~~a~f~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 325 IPCALY-------DEFWIKYARWMESSGDVSLANNVLARACKIHVK-------KTPIIHLLEARFEESNGNFDDAKVILQ 390 (577)
T ss_pred hHHhhh-------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-------CCcHHHHHHHHHHHhhccHHHHHHHHH
Confidence 766544 456667777778889999998888888877432 233455556677778899999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHh-chHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAELLKET-GRARN 552 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 552 (584)
...+- .|....+-..-.....+.|+.+.+.. +....... .-|..++. ....+...+...... ++.+.
T Consensus 391 ~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 391 RIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 98876 57777777777777888899888875 22222211 12222333 233444555554444 44455
Q ss_pred HHHHHHHHHHhhhhh
Q 007930 553 RKGKSLENLLDSNAY 567 (584)
Q Consensus 553 A~~~~l~~~~~~~~~ 567 (584)
|. ..+..+++..|.
T Consensus 460 a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 460 AR-IILLEANDILPD 473 (577)
T ss_pred HH-HHHHHhhhcCCc
Confidence 55 666666554443
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.9 Score=41.48 Aligned_cols=177 Identities=15% Similarity=0.014 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHHhh
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF-------DEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 316 (584)
....+|..++..++|+-|...|+.+..-+.........+.++...|.+....+.. ++...+++.++..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4778999999999999999999988776654444555666777777777776644 477788888888877732
Q ss_pred cC---CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHH--HHhcCHHHHHHH
Q 007930 317 GE---DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC--AKPAPATAPEEIANGLTEISAIY--EALNEHEEALKL 389 (584)
Q Consensus 317 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~ 389 (584)
.+ .......+....+.++...|.+.+|...+-+..... ... ..-..+..+..+|.++ ....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l----~~~~~alllE~~a~~~~~~~~~-------- 357 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL----RPFGSALLLEQAAYCYASLRSN-------- 357 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHhhcccccC--------
Confidence 11 123556677778888888999888877766665542 110 0001233444444444 1100
Q ss_pred HHHHHHHHHhCCC-C-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 390 LQKAMKLLEDTPG-Y-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 390 ~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
....+ . ....+.-+..-|.-|.+.|+...|..+|.+++..+..
T Consensus 358 --------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 358 --------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred --------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00000 0 1122333345577889999999999999999998764
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.39 Score=35.04 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=64.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL----GRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.-++..|++-+|++..+..+... .++......+..-|.++..+ .+.+-=..++.-+++-+.+...- .|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 3567788999999999999998872 11222224556667776544 34443333444444433333222 78
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
..+..++.||.-+....-|+++..+.-+.+--
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88899999998887777888887555444433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.5 Score=38.68 Aligned_cols=186 Identities=13% Similarity=0.059 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC---C-------HHHHHHHHHHHHHHHHhc--------------c
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA---S-------LEEAADRRLMALVYEAKA--------------D 257 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~a~~~~~l~~~~~~~g--------------~ 257 (584)
+.+.+..+++..|+..+|+..+++=+....+..+.. . ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345667889999999999999998888776654330 1 122333444555444332 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcch----------------------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 258 YESALEHLVLASMVMIANGQENE----------------------VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 258 ~~~A~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
|..|-.+...-...+......|. ....+................++.+.+|++.++..
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 23333333322222222211111 00000000000111223446688888888888765
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
.. ......+...+|..|+..|++++|..+++.+...+++ ..-......++..+..++...|+.+..+.+.-+
T Consensus 172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~---egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR---EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 42 3455667778999999999999999999999888766 223344567788888999999998887765544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.97 Score=37.31 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
.-++|...|-++- +....+.++..+.||..|. ..+.++|+.++.+++++. .+++.-+++.+..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHH
Confidence 3455555554432 3335567888999998776 668999999999999984 333355678899999999
Q ss_pred HHhchHHHHH
Q 007930 545 KETGRARNRK 554 (584)
Q Consensus 545 ~~~g~~~~A~ 554 (584)
..+|+++.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999997
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.048 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.++..||.+-...++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.4 Score=38.25 Aligned_cols=135 Identities=18% Similarity=0.180 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007930 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALV 251 (584)
Q Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~ 251 (584)
..-++-++-+.+.++-.+...| .....+++.++|..|.+.++.+.+.+++.+.++..-..+ -..+...+-..+|.+
T Consensus 89 kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~ 164 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLI 164 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHh
Confidence 3445556666666655544322 346788999999999999999999999999988776665 334444455667777
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
|..+.-.++.++. +-.++++.++....-..-...|...+...+|.+|-..+...+..+.
T Consensus 165 y~d~~vV~e~lE~---~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 165 YGDRKVVEESLEV---ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hccHHHHHHHHHH---HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7665555554444 4456667777666555556667777788888888888888777653
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.5 Score=38.93 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHH
Q 007930 262 LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341 (584)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 341 (584)
++-+++.++-..+.........++.+.|..|.+.|+-+.|++.+.+..+..-..+ ...+.......+|..|....-..
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~lV~ 161 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDLVT 161 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHHHH
Confidence 3334444444444434567788999999999999999999999988776644433 23455566667777776544333
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 342 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+..+++-.+.++ |.++...-..-..-|.......++.+|-.+|-.++..+...
T Consensus 162 ---~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 162 ---ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred ---HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 344444445444 44544444444455666677788999999888877665443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.37 Score=35.17 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=61.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL----CRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
.+.-++..|++-+|++..+..+. ..++.......+..-|.++..+ .+.+-=..++.-+++-+.+...- .|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~---~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS---RHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH---HccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH
Confidence 35667889999999999997655 3344444446666777777644 34433334444444443332211 5666
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
+..++.+|.-+.....|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777777665555666666666666544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=36.86 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+..+++.++. +|+...+.+.+|..+...|++++|++.+-+++..
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456677776 8899999999999999999999999998887764
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=6.7 Score=44.54 Aligned_cols=429 Identities=11% Similarity=0.027 Sum_probs=213.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.++++.-...++.+...+-.-+..+............. ..-..++.++-.+.++.+...+-.-+..+...+.. ++..
T Consensus 710 ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a-~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~L 786 (2710)
T PRK14707 710 DVANALNALSKWPRTPVCAAVASALAARVVAEPRLRKA-FDAQQVATALNALSKWPDNQACAAAANTLAERQLR--EPDV 786 (2710)
T ss_pred HHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhh-cCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--Ccch
Confidence 34444444555555444444444333322211111110 11234455555555555443333333333333211 1211
Q ss_pred HH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 200 AE--TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 200 ~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.. --..++.++--..++.+...+-.-+..+............+..-..++.++...+++..+..+-.-+..+......
T Consensus 787 r~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~ 866 (2710)
T PRK14707 787 RDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD 866 (2710)
T ss_pred hhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence 11 1233455555555665555554444444443332111111222345667777777777666666555555555444
Q ss_pred cchHHHHH--HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAID--VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.....+ ..++.++..++++.+...+-.-+..+...+..+........-..+++++-.+.++.++-.+-.-+..+..
T Consensus 867 e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~ 946 (2710)
T PRK14707 867 EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAE 946 (2710)
T ss_pred ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44443332 4567778888888887777777777766654222222223334566666666666554444444444433
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS-TIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
... .+........-..++.++...++|.+.-.+-.-+..+......+.. .....-..++.++....+|.++-.+-+-+
T Consensus 947 rLa-~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA 1025 (2710)
T PRK14707 947 RLS-DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATV 1025 (2710)
T ss_pred Hhc-cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHH
Confidence 321 1100111222234566677777776655555544444433311110 00111235677777777877766666666
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
..+...+..+.......--..++.++-...++.+.-.+-.-+..+...+.....-.....-..++.++..+-++.+.-.+
T Consensus 1026 ~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~C 1105 (2710)
T PRK14707 1026 EALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVC 1105 (2710)
T ss_pred HHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHH
Confidence 66655543221111122233556666666777665555554554444433311111112234667777777888888888
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (584)
-..++.+...+....++-..-....++.++..+.+|-.
T Consensus 1106 r~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707 1106 AAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred HHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence 88888887777665566555555566666666665543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.9 Score=38.18 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=112.9
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 254 AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 254 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
..++|++|++.+.... ..+.+.|++..|.+...-.++.+.+.. .+.......++..+
T Consensus 2 ~~kky~eAidLL~~Ga--------------------~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA--------------------LILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHHH--------------------HHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH--------------------HHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 3567777777665543 345555566666655555555554432 22222233455555
Q ss_pred HHHcccHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007930 334 YYRIGKLR-ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA 412 (584)
Q Consensus 334 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (584)
....+.-+ +-..+.+++++..+. +..+......+..+|..+.+.|++.+|..+|-.+-.-. ...+.
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~----------~~~~~ 125 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS----------AFAYV 125 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH----------HHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh----------HHHHH
Confidence 55443322 355566777776622 33444556788889999999998888877764321110 01110
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-------
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG------- 485 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------- 485 (584)
.+-..+...|...+. .........-|...++...|...+....+...+...
T Consensus 126 ~ll~~~~~~~~~~e~----------------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~ 183 (260)
T PF04190_consen 126 MLLEEWSTKGYPSEA----------------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDI 183 (260)
T ss_dssp HHHHHHHHHTSS--H----------------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEE
T ss_pred HHHHHHHHhcCCcch----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhcccc
Confidence 111112222222222 122222233455678999998888777766433200
Q ss_pred ---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 486 ---SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 486 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+..|. ......|-.+. ..+ +...|....+.++..+.. +|.....+..+|.+|+....
T Consensus 184 ~~~~~~Pl-lnF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 184 EYPPSYPL-LNFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp EEESS-HH-HHHHHHHHHHH-HHT-----HHHHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---S
T ss_pred CCCCCCch-HHHHHHHHHHH-hcC----cHHHHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCCC
Confidence 11121 12222222222 223 345677766666665543 67888899999999998653
|
; PDB: 3LKU_E 2WPV_G. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.5 Score=38.55 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=113.0
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
...+++..+...+.++-... .......++.+|... .+..+|..+|+.+.+. + ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----g----~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----G----LAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----c----cHHH
Confidence 34567778888877776521 125666677777653 3578888888844322 1 1345
Q ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHH
Q 007930 411 EAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-------RINEATELFEEARGV 479 (584)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~a~~~ 479 (584)
.+.+|.+|.. ..+..+|..+|+++... .+..-..+...+|..|..-. +...|...|.++-..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 6678988887 45899999999999884 11111344777887777642 233677777777765
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
....+...+|.+|.. ..++++|..+|.++.+. -+ ..+.+.++ ++...|
T Consensus 185 ----------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~---------g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 ----------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ---------GD-GAACYNLG-LMYLNG 236 (292)
T ss_pred ----------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------CC-HHHHHHHH-HHHhcC
Confidence 255788999988865 34889999999999985 22 67788888 666555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.2 Score=36.83 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 253 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
+.+-.-++|...|-++ .....-..+...+.+|..|. ..+.++++.++.+++++... +....+.++..|+.
T Consensus 117 Wsr~~d~~A~~~fL~~-----E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas 186 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQL-----EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLAS 186 (203)
T ss_pred hhccCcHHHHHHHHHH-----cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHH
Confidence 3343445666665543 12223355777888888777 67889999999999998533 33566889999999
Q ss_pred HHHHcccHHHHH
Q 007930 333 LYYRIGKLRESK 344 (584)
Q Consensus 333 ~~~~~g~~~~A~ 344 (584)
++..+|+++.|-
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999999885
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.8 Score=39.43 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADY-------ESALEHLVLASMVMI 273 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~ 273 (584)
.....||+.++..++|+-|...|+.+.+-+.... .....+.+....|.+....+.. +....+++.|...+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 4567799999999999999999999887665433 2334455566666666666533 366677777777666
Q ss_pred Hc-----CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc---HHHHHHHHHHHH--HHcccHHHH
Q 007930 274 AN-----GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS---VASIFIRLADLY--YRIGKLRES 343 (584)
Q Consensus 274 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 343 (584)
.. ........+....+.++...|.+.+|...+-+.....-. +... .+..+..+|.++ ........
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~- 361 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSP- 361 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCc-
Confidence 52 222355566677778888889988888777666554210 1122 445555555555 11000000
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+......+.-+..-|.-|...|+...|..+|.+++..+...
T Consensus 362 ---------------~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 362 ---------------GLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 000112334444555788999999999999999999988643
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.23 Score=43.81 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
...+.+|-.+|.+.++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|. ..++..++..|+.+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCchhH
Confidence 356678888999999999999999999998 8888888999999999999999999 9999999999988888
Q ss_pred HHHhH
Q 007930 572 EVTKR 576 (584)
Q Consensus 572 ~~~~~ 576 (584)
+.++.
T Consensus 252 ~~ik~ 256 (269)
T PRK10941 252 EMIRA 256 (269)
T ss_pred HHHHH
Confidence 75543
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.9 Score=37.24 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007930 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254 (584)
Q Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 254 (584)
++-++-+++.++-.++..| .....+++...|..|.+.|+-+.|.+.+.+..+..-..+ ...+.......+|..|.
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~- 155 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYL- 155 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhc-
Confidence 3445556666666555444 346788999999999999999999999999887766655 34445555566666665
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
+.+-.-+.+++|-.++++.++....-..-..-|...+...+|.+|-..|-.++..+.
T Consensus 156 --D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 156 --DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444555556667677788888776666666677777888889999988888877653
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.6 Score=36.68 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI-QAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
+..++.+....|+|++++.+.++++... .....+-...+..+|- ..|....+...+..........+. .
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---E 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---h
Confidence 5678899999999999999999998872 1122233333444442 223334444444333333222211 0
Q ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH-----cCCcchHHHHHHHHHHHHHHc-----C-----ChhHHHH
Q 007930 240 EEAADRRLMALVYEAKADY-ESALEHLVLASMVMIA-----NGQENEVAAIDVSIGNIYMSL-----C-----RFDEAIF 303 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 303 (584)
. . ...+-...... ++-...+...+.++.. ..+....+..+-..|..|... | -.++|..
T Consensus 74 ~----~--~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 K----Q--VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 0 0 11111111111 1112223333333322 112222333333455555422 1 2368999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHh
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYY-RIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 355 (584)
.|++|+++.....++.+|.......+.+..|+ ..|+.++|+...++++....
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999998777778888888787877765 48999999999888877653
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.65 Score=41.01 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....+.++-.+|...++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|...++..++.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4567778888999999999999999999999 8888888899999999999999999999999987
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.38 Score=29.86 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
..++.+|..+.+.|+|++|..+.+.++++ .|+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 46788999999999999999999999999 7776555443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=3.9 Score=37.65 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=98.1
Q ss_pred HcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHH
Q 007930 83 SSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYM 162 (584)
Q Consensus 83 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 162 (584)
.+.+ +.+|..+-+..+.-..-.....-+.-.+.+|+.+..+|-..|+...-...+..-+....-..+. .......+
T Consensus 138 d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~---e~qavLiN 213 (493)
T KOG2581|consen 138 DQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE---EGQAVLIN 213 (493)
T ss_pred hhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc---hhHHHHHH
Confidence 3455 8888888777665422211122234457788888999999999877777777666655322112 22223466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
.+-..|...+.|+.|.....+..--. ...+...+..++.+|.+..-+++|..|.+++-+++...|..
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77788888999999887766553110 11134678889999999999999999999999999988763
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.1 Score=36.20 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
+..+|.+....|+|++.+.++++++..... ....-.+.++.+|. ..|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--------Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE--------LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 467889999999999999999999988322 12233334444442 2344444555544433333222 1111
Q ss_pred cHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHHhh-----C-----CHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKLRASGE---SKSAFFGIVLNQMGLACLQL-----Y-----RINEATE 471 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~~ 471 (584)
. ...+-....+ -++=...+..++.+....-. .........+...|..|.-. | -.++|..
T Consensus 75 ~-------~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 75 Q-------VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 1 1111111111 12233445555555544211 11122222333345554422 2 2478999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATY-DALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
.|++|+++......+.+|-......+.+..| ..+|+.++|....+++++-....++
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888998888888887766 4589999999999999887655443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=5.6 Score=39.08 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..+.+.|...++..+ |..++++|...+..+..-. .+...+.....++.||..+.+.+.|.+++++|-+.. +
T Consensus 355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R 425 (872)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence 356778888889888 9999999999998765432 344567888899999999999999999999998764 3
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 188 (584)
..+.. ...+-.+....|.-++|+..........
T Consensus 426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 33332 3344556667788899998887776654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.36 E-value=1 Score=35.69 Aligned_cols=87 Identities=17% Similarity=0.030 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
+...+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------- 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------- 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------
Confidence 3455566677777888888888777655443 3445677778899999999999999999997665
Q ss_pred CCCchHHHHHHHHHHHHHcCChH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
.+..+.+--.++.|+..+|+..
T Consensus 74 -~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 -APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -CCCChHHHHHHHHHHHHcCChH
Confidence 6777777888999999998863
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.3 Score=39.09 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+|..|...|+++.|++.|-++-+.+.. .......+.++-.+-...|+|.....+..++............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 56889999999999999999999998777544 4667888889999999999999888888887665211100000
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
...+.+...-|.+....++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001123334455555666777777776543
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.88 Score=41.77 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=74.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC---Cc---h----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCH---LD---T----LGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~---~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
=|..++++++|..|..-|..+++++.+...... +. . ..+...|..||.++++.+-|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 355677888899999999999988876543222 11 1 124567899999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+|.+..-+..-|.+...+.+|.+|..
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999973
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.12 Score=42.89 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.....++.+.|.+.|.+++++ -|+....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345678999999999999999 8899999999999999999999999999999998
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.14 E-value=4.5 Score=37.34 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
.+.-+.+|++|++. ++.....+..+-.......+.++..+-+++++.. +|.....|...-....
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--------~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--------NPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCChHHHHHHHHHHH
Confidence 34556777888774 2233444555555556667888888888888887 6665555544333322
Q ss_pred ---HcCChHHHHHHHHHHHHHHHHHhCCC----------ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 504 ---ALGRVEDAIEILEYILKVREEKLGTA----------NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 504 ---~~g~~~~A~~~~~~a~~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
..-.+......|.+++.......... .........++.....+.|-.+.|. ..++.+++.+
T Consensus 111 ~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av-a~~Qa~lE~n 184 (321)
T PF08424_consen 111 SNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV-ALWQALLEFN 184 (321)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH-HHHHHHHHHH
Confidence 23467899999999998877765533 2345567788889999999999999 7888877654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.07 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++..+|.++..+|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999886
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.1 Score=43.15 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=83.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
....++++++....... ++.|..+ ......++..+...|..+.|+.....- ...-
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~D~-----------------~~rF 325 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIP-------KDQGQSIARFLEKKGYPELALQFVTDP-----------------DHRF 325 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H-----------------HHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcCCh-----------------HHHh
Confidence 34567777766655311 1111111 112556777788888888888765421 1122
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.+..+.|+++.|.+..++ ......|..||.....+|+++-|.++|+++-+.
T Consensus 326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------- 376 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------- 376 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence 345677888877765433 334558889999999999999999998876433
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
..|..+|...|+.+.-.++...+ ... ++. +..-.+++..|+.++.+..+.++
T Consensus 377 -~~L~lLy~~~g~~~~L~kl~~~a----~~~-~~~-------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 -SGLLLLYSSTGDREKLSKLAKIA----EER-GDI-------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHCT-HHHHHHHHHHH----HHT-T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -cccHHHHHHhCCHHHHHHHHHHH----HHc-cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556677777764433333332 222 110 11223445566666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.17 Score=44.00 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
+.-....|+.++|..+|+.|+.+ .|...+++..+|......++.-+|-.+|-+|+.+ +|.+.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nseA 186 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSEA 186 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchHH
Confidence 33445679999999999999999 8888899999999999999999999999999998 7888888
Q ss_pred HHHHHHHH
Q 007930 537 KERLAELL 544 (584)
Q Consensus 537 ~~~l~~~~ 544 (584)
+.+-++..
T Consensus 187 LvnR~RT~ 194 (472)
T KOG3824|consen 187 LVNRARTT 194 (472)
T ss_pred Hhhhhccc
Confidence 77665543
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.5 Score=40.30 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.....-.++..+|..|...|+++.|++.|-++.+.+.. .......+.++-.+-...|+|..-..+..++......
T Consensus 145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 34455678889999999999999999999998887655 3456777788888888899998888888777665210
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
. ..............-|.+....++|..|..++-.+.
T Consensus 220 ~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 N-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred h-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 000001112344445555666678888888876543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.94 Score=39.43 Aligned_cols=79 Identities=27% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+...+..|...|.+.+|+++.++++.+ +|-....+..|-.++..+|+--.|.+.|++.-...+.-+|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45556678888999999999999999999 8888899999999999999999999999999999988888655
Q ss_pred hhHHHHH
Q 007930 531 PDIDDEK 537 (584)
Q Consensus 531 p~~~~~~ 537 (584)
.+..+-+
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.3 Score=37.56 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578888999999999999999999999998 88888999999999999999999999999999987777775
Q ss_pred CCh
Q 007930 529 ANP 531 (584)
Q Consensus 529 ~~p 531 (584)
+.+
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.15 Score=27.43 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.++..+|.++...|++++|+..+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999886
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=93.77 E-value=6.6 Score=43.80 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHH---HHHHHHHH------
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF---SYQKGLTV------ 311 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~------ 311 (584)
.++....+|..+...|.+.+|+..|..|+..++..+|.-..+.++-.++.+..-.+....-.. ........
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~ 320 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS 320 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence 456678899999999999999999999999999999999999998888877664433221110 00000000
Q ss_pred H--HHhh--cCCcccHH----------HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 312 F--KATR--GEDHLSVA----------SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 312 ~--~~~~--~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
. .+.. ....|... .....+... -...+++++.+|.++.....+. ....-..++...++.++
T Consensus 321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~--i~~~~~~~l~~Y~~~~~~~~~~---~p~lv~~E~~lr~~~~l 395 (1185)
T PF08626_consen 321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNL--IPDLYEKALSLYSRSTNDTSEY---VPQLVYSEACLRFARFL 395 (1185)
T ss_pred cCcccCCccCCCCCCccccCCCccccchhhccCHhh--hhHHHHHHHHHHHHhhcccccc---CcchHHHHHHHHHHHHH
Confidence 0 0000 00001110 001111111 1234678888888887554331 11223456777778887
Q ss_pred HHhc--------------------CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 378 EALN--------------------EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 378 ~~~g--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
.... .-.++.+++.+++....... ...+...++..+|.+|...|-..++.-+++.++..
T Consensus 396 ~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l-~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 396 VAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL-SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7777 67788888888887654332 34455778889999999999888887777777765
Q ss_pred H
Q 007930 438 L 438 (584)
Q Consensus 438 ~ 438 (584)
+
T Consensus 475 ~ 475 (1185)
T PF08626_consen 475 L 475 (1185)
T ss_pred h
Confidence 4
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.75 E-value=5.6 Score=36.72 Aligned_cols=147 Identities=8% Similarity=0.004 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHH
Q 007930 277 QENEVAAIDVSIGNIYMSLCR------------FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESK 344 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 344 (584)
.+|....++..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 466666666666555443322 23455566666665 5666666666666777777778888
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----------cccHHHHHHH
Q 007930 345 SYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----------HSTIAGIEAQ 413 (584)
Q Consensus 345 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~ 413 (584)
.-+++++..... .+.+...|...-......-.+......|.+++......... ......++..
T Consensus 86 ~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 888888876422 23333333333333333446788888999988877654332 2344566778
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+.....+.|..+.|+..++..+++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHH
Confidence 888899999999999999999886
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.63 E-value=1 Score=34.97 Aligned_cols=85 Identities=19% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+..+...-...++.+++...+...--+ .|.....-..-|.++...|++.+|+..++...+- .
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~ 74 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------A 74 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------C
Confidence 34444444555588999998888776666 8888888889999999999999999999988763 3
Q ss_pred hhHHHHHHHHHHHHHHhchHH
Q 007930 531 PDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+..+.+.-.++.++..+|+.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 344555566777777777653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=7.2 Score=37.59 Aligned_cols=227 Identities=13% Similarity=-0.043 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.|.-+......+.++...|+.+.|+..++.+++..- .......++.+|.++..+.+|..|-..+....+..+
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-- 334 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-- 334 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--
Confidence 444455567778888888888888998888877211 234566788899999999999999998888776641
Q ss_pred CCCCChHHHHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHHHhCCCCcccH----------------------
Q 007930 358 APATAPEEIANGLTEISAIYE--------ALNEHEEALKLLQKAMKLLEDTPGYHSTI---------------------- 407 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------- 407 (584)
...+..-+..|.++. ..|+-+.|..+++.........+...+..
T Consensus 335 ------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 335 ------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred ------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 111222222233332 23466666666666555544421111100
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+.-+..++.++..-.. -+..-..++........-++......-+..+|.++...|+...|..+|+..++. ......+
T Consensus 409 a~P~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d 485 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTED 485 (546)
T ss_pred cchHHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccc
Confidence 0011122222211111 111111122221221111123334556777899999999999999999999876 2222334
Q ss_pred CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGR-VEDAIEILEYILKV 521 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~ 521 (584)
..-.+.+++.+|.+|..+|. ..++..++.+|.+-
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 55667899999999999999 99999999999875
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.33 E-value=8.6 Score=37.60 Aligned_cols=408 Identities=13% Similarity=0.033 Sum_probs=221.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
..|-.-..+..-|..-++.|. .+.++..|++++..+.. + .......++.+--..|+.+.-...|++|....
T Consensus 74 kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~------S--vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v 144 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPL------S--VDLWLSYLAFLKNNNGDPETLRDLFERAKSYV 144 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhh------H--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 445555556677788888898 89999999999986441 1 11122233444445677777777888888776
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA-ETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
....-... .|-..-..-..++++..-...|++.++. |... .-++..=.-+... +...-+...+
T Consensus 145 G~dF~S~~------lWdkyie~en~qks~k~v~~iyeRilei---------P~~~~~~~f~~f~~~l~~-~~~~~l~~~d 208 (577)
T KOG1258|consen 145 GLDFLSDP------LWDKYIEFENGQKSWKRVANIYERILEI---------PLHQLNRHFDRFKQLLNQ-NEEKILLSID 208 (577)
T ss_pred ccchhccH------HHHHHHHHHhccccHHHHHHHHHHHHhh---------hhhHhHHHHHHHHHHHhc-CChhhhcCHH
Confidence 33221111 1222223336677788888888888776 2221 1111111111111 1111111122
Q ss_pred HHHHHHHHhCC----CCCHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 225 KILEIHREHGH----SASLEEAADR-RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 225 ~al~~~~~~~~----~~~~~~a~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
++.++...... .........+ ..+-.+-...+.++++...+.+. ....=.++...-...
T Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------------~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 209 ELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------------VSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------------HHHHHHHHHhhHhHH
Confidence 22221111100 0000000000 00000000011112221111111 111112333333444
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+.+-.++..+...-....+..+.....|......-...|+++...-.+++++--+. .....|...+.....
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA---------~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA---------LYDEFWIKYARWMES 343 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh---------hhHHHHHHHHHHHHH
Confidence 44555555544322222223445566777777888889999999999999987662 346788888888888
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.|+.+-|...+..+.++.... . ..+...-+.+-...|++..|...+++..+-. +....+-......
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~---~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKK---T---PIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINW 409 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCC---C---cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhH
Confidence 899999988888887776443 1 2334455677788899999999999988742 3334444445556
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDT-LGVYSNLAAT-YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
...+|+.+.+..+ ....... ..+..++.. ...+...++. +.-.++.+.|...+.+++++ .|.+...+
T Consensus 410 e~r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~ 478 (577)
T KOG1258|consen 410 ERRKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLY 478 (577)
T ss_pred HHHhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHH
Confidence 6778888888752 2222211 112223332 2334445543 34568889999999999988 77777777
Q ss_pred HHHHHHHHHhc
Q 007930 538 ERLAELLKETG 548 (584)
Q Consensus 538 ~~l~~~~~~~g 548 (584)
..+..+...++
T Consensus 479 ~~~~~~~~~~~ 489 (577)
T KOG1258|consen 479 LELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhCC
Confidence 77777666655
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.14 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.86 E-value=5.1 Score=38.71 Aligned_cols=26 Identities=19% Similarity=0.021 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
..|..||.....+|+++-|.++|+++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 35666666666666666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.3 Score=37.02 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch---------hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR---------ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
.-|..++++++|..|.--|..+++++.+..-... ....-.+.-.+..||..+++.+-|+....+.+.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 4466777888999999999999888764321111 1111234567899999999999999999999888
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
+|....-+...|.++..+.+|.+|-..+--+.-++.-.
T Consensus 258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888999999999999999988776665544433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.2 Score=32.61 Aligned_cols=133 Identities=17% Similarity=0.094 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
..+..+-+.++ .++|+.-|...-+- .....-..+....+.+....|+...|+..|.++-...+. +....
T Consensus 63 laAL~lA~~~k-~d~Alaaf~~lekt-------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~r 131 (221)
T COG4649 63 LAALKLAQENK-TDDALAAFTDLEKT-------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGR 131 (221)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhh
Confidence 34444555666 67777766654431 112223456678899999999999999999987644211 11110
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILE 228 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (584)
. .+...-+..+...|-|++-.... +.+-++.+|....+.-.||..-++.|++..|.+.|.+...
T Consensus 132 d--~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 D--LARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred H--HHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 23556677788888887655433 3334566888888999999999999999999999998766
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.76 E-value=8.4 Score=35.93 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=138.6
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
-.......+..+.++....++..|...+.+..-.+.+ +........++..++.++.+.+..-.+..+.-.++....+
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 3455667777899999999999999999998877655 4555667778888888888888877888777777766655
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc-----hHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA-----FFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
. ..+...+..-..++..+...|..++|...+..++......|.-... ..+.++..-+..+ ...+.+.+..+++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 3344445555688899999999999999999999876554332111 0111111111112 4567888888999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED---AIEILEYILK 520 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~ 520 (584)
+|-..+.+..- +....++.+..+..|...|+.++ +...|+++..
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888877754 66788899999999999998754 5555555554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.1 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+...
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 3445566665 788999999999999999999999999988887765543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.19 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.42 E-value=11 Score=36.43 Aligned_cols=325 Identities=14% Similarity=0.087 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.+|+.+-.-+..+ .+++....|++.+.. -|....+|...........+|+....+|.++|.-.-...
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~--------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD---- 87 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV--------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD---- 87 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc--------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh----
Confidence 4577777777666 899999999998877 577788888888888999999999999999987543321
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHH---------HcCChhHHHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMI-ANGQENEVAAIDVSIGNIYM---------SLCRFDEAIFSYQKG 308 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a 308 (584)
.- -..+..+....|+...+.+...+|..... +.+-+.....+|...+..+. ...+.+.-.+.|+++
T Consensus 88 --LW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 88 --LW--KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred --HH--HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 11 12234444455665555555555544332 33444444444444444332 222445555666666
Q ss_pred HHHHHHhhcCCcccHHHHHH-----------HHH--HHHHHcccHHHHHHHHHHHHHHHhcCC------CCC-Ch--HHH
Q 007930 309 LTVFKATRGEDHLSVASIFI-----------RLA--DLYYRIGKLRESKSYCENALRVCAKPA------PAT-AP--EEI 366 (584)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~-----------~la--~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~-~~--~~~ 366 (584)
+.. .-......|. ..| .+--....|..|...+++...+.+... +.. .. ...
T Consensus 164 l~t-------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q 236 (656)
T KOG1914|consen 164 LVT-------PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ 236 (656)
T ss_pred hcC-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence 542 0001111111 111 112233456667777766655543211 000 01 111
Q ss_pred HHHHHHHHHHHHHhc------CH--HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH-------HHHHHHH
Q 007930 367 ANGLTEISAIYEALN------EH--EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY-------GEARSSF 431 (584)
Q Consensus 367 ~~~~~~la~~~~~~g------~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~ 431 (584)
...|.++...-...+ .. ..-.-.+++++....-.+.-+...+..+...+.++...|+. +++..+|
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 223333322211111 11 11223455555555444333444445555666666666664 4556666
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV 508 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 508 (584)
+++++.... .....++.++..-...- +++.-..++++.+.+. +.+..-++..+-..-.+..-.
T Consensus 317 Er~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-------~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 317 ERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-------DIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred HHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-------ccCCceehhHHHHHHHHhhhH
Confidence 666654221 12233444443332222 2555666666666653 333334566666666666777
Q ss_pred HHHHHHHHHHHHH
Q 007930 509 EDAIEILEYILKV 521 (584)
Q Consensus 509 ~~A~~~~~~a~~~ 521 (584)
+.|...|.+|-+.
T Consensus 383 kaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 383 KAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888888764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.33 E-value=5.9 Score=40.30 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 347 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
|.-|+.+++.. +.+......+....|.-++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 44445555442 55566778888999999999999999999999887654
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.19 E-value=8 Score=34.33 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=85.3
Q ss_pred hcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 007930 127 SLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206 (584)
Q Consensus 127 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 206 (584)
++++|++|++++...... +.+.|++..|.+...-.++...+.. .+........+
T Consensus 2 ~~kky~eAidLL~~Ga~~-----------------------ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl 55 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI-----------------------LLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARL 55 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH-----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH-----------------------HHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHH
Confidence 456777777776665433 3444455555544444444443321 11112223344
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------HHHHHH
Q 007930 207 AEAHIQAMQF-DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA-----------SMVMIA 274 (584)
Q Consensus 207 a~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a-----------~~~~~~ 274 (584)
..+....+.- .+-.++.+++++.. +.. .........+..+|..+...|++.+|..+|-.+ +.....
T Consensus 56 ~~l~~~~~~~~p~r~~fi~~ai~WS-~~~-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~ 133 (260)
T PF04190_consen 56 IELISLFPPEEPERKKFIKAAIKWS-KFG-SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST 133 (260)
T ss_dssp HHHHHHS-TT-TTHHHHHHHHHHHH-HTS-S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHH-ccC-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 5444444322 23566777777777 332 244455678999999999999999999988422 111122
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (584)
.+...+...........|...++...|...+..-.+..
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444443334444455678899999998887776653
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.04 E-value=3.7 Score=30.56 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH-------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+..+|...++.+++-.++-+|++|+.+.++....+. ........+||..+..+|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 355677778888888888888888888776632111 123456679999999999999999999887766544
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.99 E-value=16 Score=37.38 Aligned_cols=437 Identities=11% Similarity=0.001 Sum_probs=203.1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 144 (584)
.++........+-..++..|+ +++-...-.++.++++ ..|....-|. ....++ ..++-.++...|++++.-
T Consensus 108 i~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~p------l~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~ekal~d 179 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIAP------LPPHLWLEWL-KDELSMTQSEERKEVEELFEKALGD 179 (881)
T ss_pred ccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhcC------CChHHHHHHH-HHHHhhccCcchhHHHHHHHHHhcc
Confidence 344445556777777888888 6655444444444322 2222222222 122222 236778888888888754
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
... .......+......+..+...++++.-...|.+++...-.... ........+..+...|...-..++-+.++.
T Consensus 180 y~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 180 YNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred ccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 311 1111111112233334456667888999999999887543322 223456677777777777666677777777
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHH--H-HHHHhccHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCChhH
Q 007930 225 KILEIHREHGHSASLEEAADRRLMA--L-VYEAKADYESALEHLVLASMVMIANG-QENEVAAIDVSIGNIYMSLCRFDE 300 (584)
Q Consensus 225 ~al~~~~~~~~~~~~~~a~~~~~l~--~-~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 300 (584)
..+...- +......-+.... . ......+++.|...+.+.+....... ..+.....+..+-......|+...
T Consensus 256 ~el~~~~-----D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 256 RELKQPL-----DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHhccc-----hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7665431 1111111122222 1 11223445555544443332222111 122333344455555566677666
Q ss_pred HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY-RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 301 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
-...+++++.- .+.....+...+...- .++-.+.+...+.+++..+ +.....+ ..+.+.+.
T Consensus 331 i~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c---------p~tgdL~-~rallAle 392 (881)
T KOG0128|consen 331 IQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC---------PWTGDLW-KRALLALE 392 (881)
T ss_pred HHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcCC---------chHHHHH-HHHHHHHH
Confidence 66666665543 1222333333332211 1111222222222222221 1111111 11111111
Q ss_pred hcC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 007930 380 LNE--HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457 (584)
Q Consensus 380 ~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (584)
.++ ...-...+.+++...-.. ......+.....-.....+++.-.+.|+.|...+....+.........+...|
T Consensus 393 R~re~~~vI~~~l~~~ls~~~~l----~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA 468 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMTVEL----HNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWA 468 (881)
T ss_pred hcCcchhhHHHHHHHHHHHHHHH----HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 111 111112222222210000 00000000000001112244445555666666555443322222345566666
Q ss_pred HHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHH
Q 007930 458 LACLQ-LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDD 535 (584)
Q Consensus 458 ~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~ 535 (584)
.+... +++.+.+..++...+.. .....+..|.....+-...|+...+..++++|+.- ..+|+ ...
T Consensus 469 ~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~------~~~~~~~~e 535 (881)
T KOG0128|consen 469 QVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ------VVDPEDALE 535 (881)
T ss_pred HHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc------CcCchhHHH
Confidence 66554 46777777666655543 23344446666777777789999999988888764 23443 445
Q ss_pred HHHHHHHHHHHhchHHHHH
Q 007930 536 EKERLAELLKETGRARNRK 554 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~ 554 (584)
++..+-......|.++...
T Consensus 536 v~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHHHHHHhccccHHHHh
Confidence 6666666666667776665
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.6 Score=31.40 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 450 GIVLNQMGLACLQLYR---INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
..+.++++.++....+ ..+.+.+++..++. .......+..+.|+..+.+.++|+.++.+....++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~----- 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET----- 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----
Confidence 4677888888887654 45566666665541 112234568899999999999999999999999997
Q ss_pred CCCChhHHHHH
Q 007930 527 GTANPDIDDEK 537 (584)
Q Consensus 527 ~~~~p~~~~~~ 537 (584)
.|++.++.
T Consensus 101 ---e~~n~Qa~ 108 (149)
T KOG3364|consen 101 ---EPNNRQAL 108 (149)
T ss_pred ---CCCcHHHH
Confidence 66665554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.5 Score=32.18 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
.....++++.++....+.++- ++.+.+++.++...|| ...+..+.|+.-+.++|+|+.+. .++..+++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv----~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDV----QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHH----HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCCCcH
Confidence 346788999999887665432 3444444444432344 44678899999999999999999 99999998887765
Q ss_pred HH
Q 007930 570 KK 571 (584)
Q Consensus 570 ~~ 571 (584)
..
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 44
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.82 E-value=26 Score=37.55 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=66.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
++..... |++|+..|++....+. ...+-.++.+.+|.....+-.-..--+.|.+|+..+....+.......
T Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 554 (932)
T PRK13184 484 AFLAEKL-YDQALIFYRRIRESFP------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE-- 554 (932)
T ss_pred HHHhhHH-HHHHHHHHHHHhhcCC------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH--
Confidence 3334444 5666655555544332 122345677777877766543333335666666666555444333222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAET 202 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (584)
|...|.+|..+|+|++-++.+.-+++.+.. +|.....
T Consensus 555 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 591 (932)
T PRK13184 555 -YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRL 591 (932)
T ss_pred -HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHH
Confidence 888899999999999999999999988643 5665543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.71 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.+.||.+|...|+.+.|. ..++.++...+.....
T Consensus 2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~~~~~q~~ 35 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAR-ELLEEVIEEGDEAQRQ 35 (44)
T ss_pred chHHHHHHHHcCChHHHH-HHHHHHHHcCCHHHHH
Confidence 367999999999999999 8888888654444333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=10 Score=35.41 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQ-----ENEVAAIDVSIGNIYMSLCR---FDEAIFSYQKGLTVFK 313 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 313 (584)
+..++..|.+......|++|+..+-.|-+.+...+. ....+..-..+.+||+.+.+ ..+|..-+..+-+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 444666677777778888888777766554433221 22333444556677776654 4566666655555555
Q ss_pred HhhcCC-----------cccH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 314 ATRGED-----------HLSV---ASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 314 ~~~~~~-----------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..+|++ .|.. ...+..-|.+.+.+|+-++|.++++.+.....+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 444433 3433 344556689999999999999999999887655
|
|
| >KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.56 E-value=13 Score=33.61 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=72.8
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 330 (584)
+..+.++.++|++++++..........+..+..+...+|.++...|+..++.+.+...-+......+-. +.....++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHH
Confidence 334556899999999999888887777778888889999999999999999999988877766654332 3233444455
Q ss_pred H-HHHHHcccHHHHHHHHHHHHH
Q 007930 331 A-DLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 331 a-~~~~~~g~~~~A~~~~~~al~ 352 (584)
+ ..|...|++.......-.-+.
T Consensus 163 ssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Confidence 4 445567777765444444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.46 E-value=16 Score=34.51 Aligned_cols=215 Identities=12% Similarity=0.050 Sum_probs=121.1
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....+|+.........++-+.|+...++++..... ....++.+|....+-+....+|+++.+....
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------------hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 4556667777777777888888888877777655421 3445666666666666666666665543321
Q ss_pred CC---------C--Ccc-cHHH-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 400 TP---------G--YHS-TIAG-----------IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 400 ~~---------~--~~~-~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
.+ + ..+ .... ++...-..-.+..-.+.|...|-++-+ .+-..+.. .+++.+
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk----~~~~~h~v--yi~~A~ 439 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK----EGIVGHHV--YIYCAF 439 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc----cCCCCcce--eeeHHH
Confidence 10 0 001 0000 111111111222234444455544433 22111111 112221
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
.-+...|++.-|...|+-.+.. .++........-..+...++-+.|..+|++++...++ ......
T Consensus 440 -~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~i 504 (660)
T COG5107 440 -IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRI 504 (660)
T ss_pred -HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHH
Confidence 2345679999999999988887 6666555555666677889999999999999886433 234556
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+..+...-..-|+...++ ..-+..-+.-|+.
T Consensus 505 y~kmi~YEs~~G~lN~v~-sLe~rf~e~~pQe 535 (660)
T COG5107 505 YDKMIEYESMVGSLNNVY-SLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHHhhcchHHHH-hHHHHHHHHcCcH
Confidence 666666666777777776 3333333444443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.5 Score=39.46 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=54.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.....++.+.|.+.|.+++.+ -|+....|+++|....+.|+++.|. ..++..++.+|+....
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccc
Confidence 445678999999999999998 8999999999999999999999999 8888888888776543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.33 E-value=4.5 Score=31.59 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
....+..+...-...++++++...+...--+.|+.. .+-..-|.++...|++.+|+..++...+ .
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~-------e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~ 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK-------ELDMFDGWLLIARGNYDEAARILRELLS--------S 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc-------ccchhHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence 445555566666668899999888876655555542 2333568899999999999999998776 2
Q ss_pred CchHHHHHHHHHHHHHhhCCH
Q 007930 446 SAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~ 466 (584)
.+..+..--.++.|+..+|+.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 222344445566666666664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.99 Score=26.70 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
+.||.+|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999986
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=90.12 E-value=12 Score=32.61 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
+..+|.+....++|++.+.+..++++..... .....-.+.+..+|-. .|....+...+.. ++......+...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~------eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~ 76 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSE------ELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNED 76 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCc------cCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchH
Confidence 3457788888999999999999988752110 0112233344444432 3555555555544 222211112111
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC---CchHHHHHHHHHHHHHhh-----CC-----HHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK---SAFFGIVLNQMGLACLQL-----YR-----INEATEL 472 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-----g~-----~~~A~~~ 472 (584)
.. .+..-|. ..=-++-..++...+.+.....-+. +......+...|..|.-. |+ .++|...
T Consensus 77 ~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 77 HV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 00 1111111 1112334456666777665442211 122222333345444422 22 4689999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 007930 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYD-ALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|++|.++......+.+|-......+.+..|+ -+++.++|....+++++-.-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999887778888887777777766554 569999999888888775433
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.8 Score=28.32 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELEL 114 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 114 (584)
.+..+...|..+-..|+ +++|+.+|+++++.+.++....++...
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 35567788888889999 999999999999998887654444333
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=2.7 Score=40.08 Aligned_cols=86 Identities=22% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 464 YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE---DAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 464 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
+....|+..|.+++.. .|.....+.+.+.++++.+-.. .|+.-...++.+ +|....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 4566788888888877 7777788888888888765444 455555556665 89999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 541 AELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++++..++++.+|. .+...+....|
T Consensus 452 a~aL~el~r~~eal-~~~~alq~~~P 476 (758)
T KOG1310|consen 452 ARALNELTRYLEAL-SCHWALQMSFP 476 (758)
T ss_pred HHHHHHHhhHHHhh-hhHHHHhhcCc
Confidence 99999999999999 77777766666
|
|
| >PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [] | Back alignment and domain information |
|---|
Probab=89.79 E-value=15 Score=35.82 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMS--LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
+-++-..+.......++.+||.+-.. ...-..++.+|.+++...+..++ .....-|..+|..+++.+++.+|+..
T Consensus 264 Lw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~ 340 (618)
T PF05053_consen 264 LWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRS 340 (618)
T ss_dssp HHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHH
Confidence 33334444555566666666666542 33456789999999999888874 33455677889999999999999999
Q ss_pred HHHHHHHHhcC
Q 007930 347 CENALRVCAKP 357 (584)
Q Consensus 347 ~~~al~~~~~~ 357 (584)
+-++-......
T Consensus 341 Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 341 WAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHc
Confidence 99998887663
|
; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.65 E-value=4.9 Score=37.85 Aligned_cols=76 Identities=12% Similarity=-0.013 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
-++..+.+++..+|+|..|++.++..---...++....+-...+++.+|.+|+..++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778899999999999988765421111122233455677899999999999999999999999987655443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.3 Score=38.79 Aligned_cols=71 Identities=20% Similarity=0.085 Sum_probs=58.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
.+.-..+.|+.++|..+|+-++.+ .|....++..+|......++.-+|-.+|-+|+.+ .|...+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 344456789999999999999996 4456789999999999999999999999999998 777666
Q ss_pred HHHHHHH
Q 007930 494 VYSNLAA 500 (584)
Q Consensus 494 ~~~~la~ 500 (584)
++.+.++
T Consensus 186 ALvnR~R 192 (472)
T KOG3824|consen 186 ALVNRAR 192 (472)
T ss_pred HHhhhhc
Confidence 6666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.34 E-value=12 Score=33.21 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
.++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-+......+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 56788899999999999999999999988 8888899999999999999999999999999886544443
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.9 Score=42.52 Aligned_cols=75 Identities=17% Similarity=0.061 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
++..|.+++...|+|..|++.++..---....+....+-...+++.+|.+|..+++|.+|++.|..++-...+.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888999999999998765432222223333455667899999999999999999999999988765544
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=88.28 E-value=8.9 Score=28.66 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD-------TLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+..+|....+.+++-.++-.|++|+.+.++.......+ ......+||..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999999988874322222 12357899999999999999999999887765555
Q ss_pred hC
Q 007930 526 LG 527 (584)
Q Consensus 526 ~~ 527 (584)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.22 E-value=41 Score=36.17 Aligned_cols=107 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 121 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
...++.....|+.|+..|++...-++ |.... .++.+.+|.....+-.-..--+.|.+|+..+....+ .+...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKEG---YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Ccccc---hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 45566677788888888888665542 22211 145777777776554333333667777777766633 45555
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
--|...|.+|...|++++-++++.-+++.++..+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 66777888999999999999999999999887664
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=88.12 E-value=10 Score=29.13 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 007930 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM 417 (584)
Q Consensus 338 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 417 (584)
+.-..-...+++++........-.+.+....+|...+.... .+.+.|...... +-....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 45556677888888887553212234445555555554322 666777654432 2233347788899999
Q ss_pred HHHhccHHHHHHHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAV 435 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~ 435 (584)
+...|++++|.+.|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998864
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=87.81 E-value=18 Score=31.59 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIH-REHGHSASLEEAADRRLMALVYEA-KADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
+..+|.+..+.++|++.+.+.+++.+.. +.... ..-.+.+..+|.. .|....+...+......-...+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 3457788888999999999999988752 21111 1114444544443 25555555555431111001111111
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc---ccHHHHHHHHHHHHHHc-----cc-----HHHHHHHH
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH---LSVASIFIRLADLYYRI-----GK-----LRESKSYC 347 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 347 (584)
. .+..-|. ..=-++-...+..++.+.....-+.. ...+..+-..|..|... |+ .+.|...|
T Consensus 78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 1111111 11123445566677777655443321 12223333445555432 21 45889999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 397 (584)
++|+++..... .+.+|.......+.+..|+ -+++.++|....++++.-.
T Consensus 152 ~~A~e~a~~~L-~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAEL-PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987643 4445555555555555554 5689999988877776654
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.70 E-value=20 Score=32.09 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....+...||.+|-..++|..|-..+.-. .........+.......+..+|.+|...++..+|..+..++.-......+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45678889999999999999988766432 11111111123334566888999999999999999999988655554444
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
+......-.-.|+++-..++|-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556777777788877776666543
|
|
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.8 Score=37.90 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.-+...|+-...++++++|...|..|..+..+++|..|-++..+++..|..++..++.+...
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999999999999999999999999999999999999999988775
|
|
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=87.11 E-value=5.6 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 119 (584)
+..+...|...=..|+ +++|+.+|.++++.+.......+++..-..+.
T Consensus 6 a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r 53 (77)
T cd02683 6 AKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLR 53 (77)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4557778888888899 99999999999999888665555554444433
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.10 E-value=32 Score=33.77 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=93.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHHHHHHhc
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSG---------------QELELVMSLHMLAAIYCSL 128 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~ 128 (584)
..++|-.++.++.++.+...+|+ .+-|.+..++++=.+++..... .+.....+++..-....+.
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD-~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGD-REMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999 8999999999998877764311 1122334444445556678
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
|-+..|.+++.-.+.+.+ ..+|... .+.+-....+..+|.=-++.++..-.. .++ ..-|.... -..+|.
T Consensus 356 GC~rTA~E~cKlllsLdp----~eDPl~~---l~~ID~~ALrareYqwiI~~~~~~e~~-n~l--~~~PN~~y-S~AlA~ 424 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDP----SEDPLGI---LYLIDIYALRAREYQWIIELSNEPENM-NKL--SQLPNFGY-SLALAR 424 (665)
T ss_pred CChHHHHHHHHHHhhcCC----cCCchhH---HHHHHHHHHHHHhHHHHHHHHHHHHhh-ccH--hhcCCchH-HHHHHH
Confidence 999999999988887752 2244321 222333333444554444444433211 000 00122221 123445
Q ss_pred HHHHhCC---HHHHHHHHHHHHHHHH
Q 007930 209 AHIQAMQ---FDEAENLCKKILEIHR 231 (584)
Q Consensus 209 ~~~~~g~---~~~A~~~~~~al~~~~ 231 (584)
.|..... -..|...+.+|+.+.|
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5555444 4567788888887765
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=15 Score=29.88 Aligned_cols=148 Identities=10% Similarity=0.136 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-
Q 007930 222 LCKKILEIHREHGHSASLEEAADRRLMALVYE-----AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL- 295 (584)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~- 295 (584)
.|+.+.+++..+-+.+ ..+...+.+|..+. ..++...|++.+..+-. .....+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence 3444444444443221 12334555555444 34678888888887643 33445556667666532
Q ss_pred ----CC--hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH------------------------HcccHHHHHH
Q 007930 296 ----CR--FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY------------------------RIGKLRESKS 345 (584)
Q Consensus 296 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~ 345 (584)
++ ..+|++++.++-++ ....+.+.|...|. ...+.+.|..
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 23 66788888887654 22223333333333 2345566666
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhC
Q 007930 346 YCENALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 346 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.-++-++. ...+..++.+.|..- .+.++|..+-.+|.++..+.
T Consensus 190 fa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 190 FAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 666665542 245566666666532 35778888888888877654
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=87.03 E-value=7.4 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+...|.-+-..|++++|+.+|+++++++.+...
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677899999999999999999888765
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=86.88 E-value=15 Score=29.83 Aligned_cols=174 Identities=12% Similarity=0.026 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHH-----HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYM-----SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI- 337 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 337 (584)
.|+.|..++...-+....+...+.+|..++ ..++...|++.+..+-+. ..+.+...+|.+++.-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 455555555565566666667777776665 345677888888877653 3445566667666542
Q ss_pred ----c--cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 338 ----G--KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 338 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
+ +..+|++++.++-++.. ..+...|...|..- .+++ ....+.. +.++
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~~-----------~~aCf~LS~m~~~g--~~k~-------~t~ap~~-g~p~------ 172 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLED-----------GEACFLLSTMYMGG--KEKF-------KTNAPGE-GKPL------ 172 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCCC-----------chHHHHHHHHHhcc--chhh-------cccCCCC-CCCc------
Confidence 2 36788888888876631 34555555555432 1221 1111111 2232
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhC
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..+..+.-..+.++|.++--+|.++ . ...+..++.+.|..- .+-++|..+-.+|.++.+++..
T Consensus 173 -~~~~~~~~~kDMdka~qfa~kACel-------~---~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 173 -DRAELGSLSKDMDKALQFAIKACEL-------D---IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred -chhhhhhhhHhHHHHHHHHHHHHhc-------C---ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 2344555667888999888888775 2 245666777776542 4688999999999999877654
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=86.36 E-value=5.6 Score=26.48 Aligned_cols=45 Identities=22% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 116 (584)
+-.+...|...-..|+ +++|+.+|.+++..+........++..-.
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~ 49 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQ 49 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 3456778888888999 99999999999998776654333344333
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.85 E-value=3.4 Score=37.44 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
.-+...|+-.+.++++++|...|..|..+....+|..+.....+++..|..++..+++...+-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4477889999999999999999999999999999999999999999999999998887765543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.83 E-value=38 Score=33.33 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHHHHHhh----cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC------------
Q 007930 296 CRFDEAIFSYQKGLTVFKATR----GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP------------ 359 (584)
Q Consensus 296 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------ 359 (584)
.-|++|...|.-+.....-.. -..+|.....+..++.++..+|+.+.|....++++-......-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 345566666655554422100 0126788899999999999999999999999998866544310
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 360 ---ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 360 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
...+.....++...-..+...|.+..|.++++-.+.+.+.. ++. .+.+.+-...++..+|+=-+..++..-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e--DPl---~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE--DPL---GILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC--Cch---hHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 01112233344445566678899999999999888876552 111 2222333333455566555555554422
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYR---INEATELFEEARGVLE 481 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 481 (584)
. ..+. ..|..+ .-..++..|..... -+.|...+.+|+.++.
T Consensus 407 ~-n~l~--~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 407 M-NKLS--QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred h-ccHh--hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 1 1110 011111 12235556665554 5778888888888743
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.74 E-value=26 Score=31.43 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.....+...+|.+|...++|..|...+.-.-.-- .....+.......+..+|++|...++..+|..+..++--+....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~t-g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDT-GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccc-chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 3456778889999999999999887764321110 00000122345678899999999999999999998876553322
Q ss_pred CCCChh-HHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 527 GTANPD-IDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 527 ~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.++. ......-.|+++...+++-+|.+.+.+...
T Consensus 178 --~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 --SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 233334458888888999998866665443
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.53 E-value=0.72 Score=42.92 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 474 EEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 474 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
-+++-+.+++.++.||+........|-+|..+|+++.-+++++-|+.+.++.+.|-.|.+...+...++++...
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 35677778889999999877677789999999999999999999999999999999999999999998887654
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.25 E-value=11 Score=35.16 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS---CHLDTLGVYSNLAATYDALGR---VEDAIEILEYILKVRE 523 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 523 (584)
+..++..|.+.+....|++|+.++-.|-+.+..-... .-.+.+..-..+.+||+.+.+ ..+|..-+..+-.-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 3445566777777788888887777766655332110 112334445566788887765 3466666666666555
Q ss_pred HHhC-----------CCChhHH---HHHHHHHHHHHHhchHHHHHHHHHHHHHh-hhhhhhHHHHHhHhhcCCC
Q 007930 524 EKLG-----------TANPDID---DEKERLAELLKETGRARNRKGKSLENLLD-SNAYRVKKEVTKRRSGFGF 582 (584)
Q Consensus 524 ~~~~-----------~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 582 (584)
..+| +..|+.+ ..+..-|.+.+.+|+.++|+ .+++.+.. ...-.++.+.+...-++||
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAy-e~le~a~~~l~elki~d~~lsllv~mGf 315 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAY-EALESAHAKLLELKINDETLSLLVGMGF 315 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHeeccchHHHHHHHcCC
Confidence 5444 4445543 33445588999999999999 77776553 2222333334444444554
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=84.87 E-value=4.6 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILE--YILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~ 521 (584)
+.++.+|-.+..+|++++|+..|. -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457889999999999999999944 65554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.72 E-value=19 Score=35.36 Aligned_cols=98 Identities=19% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHHhCCCChhHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY-ILKVREEKLGTANPDID 534 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~p~~~ 534 (584)
+...+...+....+.-.+..++.. ++....+..+|+......|....+...+.+ +... .|.+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 666677778888888888888887 888889999999998888887777766665 4444 45555
Q ss_pred HHHHHH------HHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 535 DEKERL------AELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 535 ~~~~~l------~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.....+ +.....+|+..++. ..++.+.+..|+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~d~~p~~~~ 177 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAE-LALERAVDLLPKYPR 177 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhhhhhhh
Confidence 555444 88888888888887 777777777666543
|
|
| >KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.54 E-value=31 Score=31.31 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-........-.+. +-..++.+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~-Vh~~fY~l 162 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN-VHSSFYSL 162 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh-hhhhHHHH
Confidence 345568999999999998877665 4445666777889999999999999999999988877776554332 33445555
Q ss_pred HHH-HHhhCCHHHHHHHH
Q 007930 457 GLA-CLQLYRINEATELF 473 (584)
Q Consensus 457 ~~~-~~~~g~~~~A~~~~ 473 (584)
+.- |...|++.......
T Consensus 163 ssqYyk~~~d~a~yYr~~ 180 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHA 180 (380)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 544 44557776544433
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=84.34 E-value=17 Score=27.97 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=53.8
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
+.-..-..++++++........-.+....+..+...+. . ..++...|...... -. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~--~~~~~~if~~l~~~---~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----L--SSDPREIFKFLYSK---GI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----T--BSHHHHHHHHHHHH---TT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----H--ccCHHHHHHHHHHc---Cc---cHHHHHHHHHHHH
Confidence 45555667888888887543322222222233333332 2 22777777766543 12 2345778888899
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al 227 (584)
.+...|++.+|.++|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=84.23 E-value=9.7 Score=25.92 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSL 118 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 118 (584)
+..++..|...-..|+ +++|+.+|.++++.+-......+++.....+
T Consensus 6 A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~ 52 (75)
T cd02678 6 AIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESI 52 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4456777877888898 9999999999999988765444444443333
|
This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.99 E-value=5.9 Score=37.38 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=65.5
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|+.-.|-.-...++... +..+......+.+....|.|+.|...+..+-.+. + ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHHH
Confidence 3456555555555555421 1122333445677778888888877776655442 1 1123444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+....+|++++|...-+-.+.- .-++.+...--+-.-..+|-++++. .+.+.++..+|+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 5566677777666554443321 2233333333344445566667776 666666655544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.92 E-value=19 Score=31.93 Aligned_cols=73 Identities=18% Similarity=0.063 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.+...+..|...|.+.+|+.+.++++.. ++.....+..+-.++...|+--.|+..|++.-+..+...|-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 4456678899999999999999999985 45556778888899999999999999999998888777775433
Q ss_pred c
Q 007930 490 D 490 (584)
Q Consensus 490 ~ 490 (584)
+
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 3
|
|
| >smart00745 MIT Microtubule Interacting and Trafficking molecule domain | Back alignment and domain information |
|---|
Probab=82.99 E-value=12 Score=25.50 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELV 115 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 115 (584)
+..+...|...-..|+ +++|+.+|.++++.+.......+++...
T Consensus 8 A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~ 51 (77)
T smart00745 8 AKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRR 51 (77)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 3456677777878898 9999999999999988766444444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=82.67 E-value=3.3 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
..+|+.+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46889999999999999999999875
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=82.48 E-value=12 Score=24.91 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEK 537 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~ 537 (584)
...|.-+-..|++++|+.+|.++++.+...+. ..+|.....+
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l 51 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQAL 51 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34455556789999999999999998877655 2244444443
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.15 E-value=47 Score=31.59 Aligned_cols=67 Identities=12% Similarity=-0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 007930 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 187 (584)
.-....+...+..++|..|...+...... ..+... .........|..++..-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455677788899999999999987764 111111 11122334455666778889999988887665
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.47 E-value=4 Score=36.90 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=88.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC-----------CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGES-----------KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
..+.-..+.+++..|..-+.+++......... ....-.....+++.+-...+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 34556778888888888888887765421100 01112234556777778888888888776666663
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
.+....+++..+..+....++++|++.++.+... .|+.......+..+-....++.+-
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~~~~ 362 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQYNRK 362 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHHHHH
Confidence 6677789999999999999999999999999887 777777766666665555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=81.44 E-value=3.8 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 322 SVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
....+|..+-..|.+.|+.++|.+.+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3456888999999999999999999876
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.25 E-value=17 Score=31.98 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
......++=..+...++++.|..+.++.+.+ +|..+.-+...|.+|.++|.+.-|++.++..++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 4556667777888899999999999999998 7887777889999999999999999999998876
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.20 E-value=10 Score=36.41 Aligned_cols=84 Identities=14% Similarity=-0.045 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---YRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
+....|+..|.+++.. .+.....+.+.+.++++. |+.-.|+.-...|+++ +|....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 3455667777777663 334456777788888775 4555666666777777 88899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
++++..++++.+|+.+...+...
T Consensus 452 a~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhc
Confidence 99999999999999887766554
|
|
| >cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.08 E-value=15 Score=25.04 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 119 (584)
+-.++..|...-..|+ +++|+.+|.++++.+-.......++..-..+.
T Consensus 6 Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr 53 (75)
T cd02684 6 AIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALR 53 (75)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3456777777778888 99999999999999887665555555544443
|
This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=80.79 E-value=5.5 Score=35.94 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
|..+|.+|..+ .|.....+..||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999999 8999999999999999999999999999999865 3555 6788888888887
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.50 E-value=15 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHH
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMS 117 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 117 (584)
..+...|...-..|+ +++|+.+|..|++.+.......+++..-..
T Consensus 7 ~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~ 51 (75)
T cd02656 7 KELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKL 51 (75)
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 345667777777888 999999999999998876644444443333
|
The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear. |
| >PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=80.36 E-value=28 Score=27.74 Aligned_cols=132 Identities=15% Similarity=0.032 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
++-+-|...++..+... +......+.......-...|.+.+|..++.+.++. .+..+...+|..++.|
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHH
Confidence 45555666666644421 11111223333344455678999999999999886 2355677788889988
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 502 YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 502 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.....+-..-...-++..+......++..|..+.+-..-+..-.+.|...+|. +.++.++..+-
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Snn 202 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASNN 202 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhcc
Confidence 88776655444444555555555566777777776666676677888888998 99999886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 584 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 7e-09 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 3e-08 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 3e-04 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 6e-08 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 1e-04 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 6e-08 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 1e-04 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-04 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 9e-39
Identities = 70/430 (16%), Positives = 132/430 (30%), Gaps = 42/430 (9%)
Query: 107 GSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGD 166
G G + L + C G V E +++ +G + L+ Y QLG+
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAI--YSQLGN 55
Query: 167 TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226
+ +++ + L + +GD A+ L FDEA C++
Sbjct: 56 AYFYLHDYAKALEYHHHDLTLA-RTIGD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Query: 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286
L+I RE EA + VY AK +
Sbjct: 114 LDISRELNDKVG--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--------- 162
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
A+ Y++ L++ A D + F L + +Y +G R++
Sbjct: 163 -----------LQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406
E L + + A + + Y L E E A + +K + L +
Sbjct: 210 HEQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAV 265
Query: 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466
A +G ++ Y +A + + + G +G A L
Sbjct: 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTALGNH 323
Query: 467 NEATELFEEARGVLEQ-----ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521
++A E+ + + + L+ + L +Y + ++ L
Sbjct: 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
Query: 522 REEKLGTANP 531
KLG +
Sbjct: 384 VRPKLGRRHS 393
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-29
Identities = 64/341 (18%), Positives = 113/341 (33%), Gaps = 38/341 (11%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV-V 145
+ KAL+Y G +L + L LG F+EA+ +R +++
Sbjct: 62 DYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118
Query: 146 DIGKGSDRALAKFSGYMQLGDTCSSMG--------------------LLDRSVWCYESGL 185
++ A A LG+ + G L +V YE L
Sbjct: 119 ELNDKVGEARA----LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174
Query: 186 EIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADR 245
+ ALGD L H F +A ++ L I +E G A+ E
Sbjct: 175 SLV-TALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERRAY 230
Query: 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305
+ Y ++E+A E+ ++ A S+GN Y L +++AI +
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290
Query: 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL----RVCAKPAPAT 361
K L + + D + L + Y +G ++ + E L V K T
Sbjct: 291 LKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348
Query: 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402
A +++ + Y N + ++ + G
Sbjct: 349 ARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLG 389
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 4e-37
Identities = 59/394 (14%), Positives = 128/394 (32%), Gaps = 51/394 (12%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146
+ + + ++ SGS + + L + C+ G V + +I+
Sbjct: 23 SGGGGTNSH---DGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ--- 76
Query: 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206
G R L+ Y QLG+ +G ++++ ++ L + +++ D A++ L
Sbjct: 77 AGTEDLRTLSAI--YSQLGNAYFYLGDYNKAMQYHKHDLTLA-KSMND-RLGEAKSSGNL 132
Query: 207 AEAHIQAMQFDEAENLCKKILEIHRE----HGHSASLEEAADRRLMALVYEAKADYESAL 262
+FDEA C++ L + R+ +L + VY AK +
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN------LGNVYHAKGKHLGQR 186
Query: 263 EHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322
V A A+ YQ+ L + + D +
Sbjct: 187 NPGKFGDDVKEA-----------------------LTRAVEFYQENLKLMRDL--GDRGA 221
Query: 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382
L + YY +G + + + + LR+ + A + + + L +
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA---ERRANSNLGNSHIFLGQ 278
Query: 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442
E+A + ++ + L + G A +G ++ + A + + G
Sbjct: 279 FEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337
Query: 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
+ +G A + A + E+
Sbjct: 338 DRIGE--ARACWSLGNAHSAIGGHERALKYAEQH 369
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 54/355 (15%), Positives = 113/355 (31%), Gaps = 37/355 (10%)
Query: 60 IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119
S + L ++GD + + + + + + L
Sbjct: 37 QGSGSDGGSSMCLELALEGERLCNAGDCR-AGVAFF---QAAIQAGTEDLRTL--SAIYS 90
Query: 120 MLAAIYCSLGRFEEAVPVLERSIEVV-DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
L Y LG + +A+ + + + + A + LG+T MG D +
Sbjct: 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS----SGNLGNTLKVMGRFDEAA 146
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAH-----------------IQAMQFDEAEN 221
C E L + LGD L + A
Sbjct: 147 ICCERHLTLA-RQLGDR-LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204
Query: 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281
++ L++ R+ G + + + Y D+++A+EH + G
Sbjct: 205 FYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262
Query: 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341
+ ++GN ++ L +F++A Y++ L + + A L + Y + +
Sbjct: 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN 320
Query: 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ Y L + + A + + A+ HE ALK ++ ++L
Sbjct: 321 TAIEYHNRHLAIAQE---LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 29/294 (9%)
Query: 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307
+ S + + + G + + +Q
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
+ ED ++++I+ +L + Y+ +G ++ Y ++ L + A
Sbjct: 74 AIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS---MNDRLGEA 126
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427
+ + + +EA ++ + L G + +G + + G++
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHLGQ 185
Query: 428 RSSFESAVVKLRASGESKSAF---------------FGIVLNQMGLACLQLYRINEATEL 472
R+ + A + + G +G L A E
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245
Query: 473 FEEARGVLE--QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
+E L +E G SNL ++ LG+ EDA E + L + E
Sbjct: 246 HQER---LRIAREFGD-RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 59/354 (16%), Positives = 119/354 (33%), Gaps = 61/354 (17%)
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE-HGHSASL 239
+ + G P T L + +++ A LCK+ LE + GH
Sbjct: 8 SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH---- 63
Query: 240 EEAADRRLMALVYEAKADYESALEHL-VLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298
+H V + + +Y ++
Sbjct: 64 -----------------------DHPDVATML---NI------------LALVYRDQNKY 85
Query: 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358
+A L + + T G+DH +VA+ LA LY + GK +E++ C+ AL + K
Sbjct: 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVM 417
P+ +A L ++ + + ++EE Q+A+++ + G +A + +
Sbjct: 146 GKDHPD-VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 204
Query: 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFG-------IVLNQMGLACLQLYRINEAT 470
G++ +A + ++ + + FG + + + T
Sbjct: 205 YLKQGKFKQAETLYKEILTRAH------EREFGSVDDENKPIWMHAEEREECKGKQKDGT 258
Query: 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
E + C NL A Y G+ E A + E ++ R++
Sbjct: 259 SFGEYG--GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 52/324 (16%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD-RALAKFSGYMQLGDTCSSMGLLD 175
+LH L Y S GR+E AVP+ ++++E ++ G D +A + L
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA--TMLNILALVYRDQNKYK 86
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE-HG 234
+ L I+ + LG P VA T LA + + ++ EAE LCK+ LEI + G
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 235 HSASLEEAADRRLMALVYEAKADYESALEHL-VLASMVMIANGQENEVAAIDVSIGNIYM 293
+H V + N + +
Sbjct: 147 K---------------------------DHPDVAKQL---NN------------LALLCQ 164
Query: 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353
+ +++E + YQ+ L +++ G D +VA LA Y + GK +++++ + L
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224
Query: 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA--MKLLEDTPGYHSTIAGIE 411
+ + +E E + ++ + K + T+
Sbjct: 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD---SPTVTTTL 281
Query: 412 AQMGVMLYVVGRYGEARSSFESAV 435
+G + G++ A + E+A+
Sbjct: 282 KNLGALYRRQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 15/254 (5%)
Query: 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363
++ G + + L Y G+ + C+ AL K + P
Sbjct: 7 HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP 66
Query: 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVG 422
+ +A L ++ +Y N++++A LL A+ + E T G H +A + V+ G
Sbjct: 67 D-VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125
Query: 423 RYGEARSSFESAV-VKLRASGES-----KSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
+Y EA + A+ ++ + G+ K LN + L C + E ++ A
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQ------LNNLALLCQNQGKYEEVEYYYQRA 179
Query: 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL-KVREEKLGTANPDIDD 535
+ + + G + +NLA+ Y G+ + A + + IL + E + G+ + +
Sbjct: 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239
Query: 536 EKERLAELLKETGR 549
E + G+
Sbjct: 240 IWMHAEEREECKGK 253
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 16/177 (9%)
Query: 380 LNEHEEALKLLQKAMKLLEDTPGY-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VK 437
++ H L GY + + GRY A + A+
Sbjct: 1 MHHHHHHSSG---RENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57
Query: 438 LRASGES-----KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492
+ SG LN + L + +A L +A + E+ G H
Sbjct: 58 EKTSGHDHPDVATM------LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111
Query: 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
+NLA Y G+ ++A + + L++RE+ LG +PD+ + LA L + G+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSI-EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL 174
+ + LA+ Y G+F++A + + + + GS K +M + G
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI-WMHAEEREECKGKQ 254
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232
E +A P V T + L + + +F+ AE L + + ++
Sbjct: 255 KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 61/361 (16%), Positives = 113/361 (31%), Gaps = 37/361 (10%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLD 175
+ L + C G V E +++ +G + L+ Y QLG+ +
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAI--YSQLGNAYFYLHDYA 60
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235
+++ + L + +GD A+ L FDEA C++ L+I RE
Sbjct: 61 KALEYHHHDLTLA-RTIGD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN- 117
Query: 236 SASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL 295
+ EA + VY AK
Sbjct: 118 -DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------------------ 158
Query: 296 CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355
A+ Y++ L++ A D + F L + +Y +G R++ E L +
Sbjct: 159 --LQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214
Query: 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415
+ A + + Y L E E A + +K + L + A +G
Sbjct: 215 EFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLG 270
Query: 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475
++ Y +A + + + G +G A L ++A E+
Sbjct: 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEK 328
Query: 476 A 476
Sbjct: 329 H 329
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 48/305 (15%), Positives = 97/305 (31%), Gaps = 34/305 (11%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEV-VDIGKGSDRALAKFSGYMQLGDTCSSMGLLD 175
L Y L + +A+ + + IG A A LG+T +G D
Sbjct: 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA----SGNLGNTLKVLGNFD 100
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAH--------------------IQAMQ 215
++ C + L+I L D A L +
Sbjct: 101 EAIVCCQRHLDIS-RELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158
Query: 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275
A +L ++ L + G A+ + + + ++ A+ ++
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216
Query: 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335
G + ++GN Y+ L F+ A Y+K L + + +D A L + Y
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYT 274
Query: 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395
+ ++ Y L + + + Y AL H++A+ +K ++
Sbjct: 275 LLQDYEKAIDYHLKHLAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331
Query: 396 LLEDT 400
+ +
Sbjct: 332 ISREV 336
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 26/301 (8%)
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+ L D + + A V + ++AI +GN Y L + +
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAA--VQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC----AK 356
A+ + LT+ + D L A L + +G E+ C+ L + K
Sbjct: 62 ALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 357 PAPATA-------------PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403
A A + N + A+ L ++ + L+ G
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GD 178
Query: 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463
+ +G Y++G + +A + E ++ + G+ + + +G A + L
Sbjct: 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGNAYIFL 236
Query: 464 YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523
A+E +++ + Q +L TY L E AI+ L + +
Sbjct: 237 GEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294
Query: 524 E 524
E
Sbjct: 295 E 295
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 34/289 (11%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV-V 145
+ KAL+Y G +L + L LG F+EA+ +R +++
Sbjct: 58 DYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114
Query: 146 DIGKGSDRALAKFSGYMQLGDTCSSMG--------------------LLDRSVWCYESGL 185
++ A A LG+ + G L +V YE L
Sbjct: 115 ELNDKVGEARA----LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170
Query: 186 EIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADR 245
+ ALGD L H F +A ++ L I +E G A+ E
Sbjct: 171 SLV-TALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERRAY 226
Query: 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305
+ Y ++E+A E+ ++ A S+GN Y L +++AI +
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286
Query: 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354
K L + + +D + L + Y +G ++ + E L +
Sbjct: 287 LKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 7/160 (4%)
Query: 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG 425
L + + + A+++ + T++ I +Q+G + + Y
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYLHDYA 60
Query: 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485
+A + R G+ +G L +EA + + +E
Sbjct: 61 KALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELN 117
Query: 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525
+ NL Y A G+ + + +
Sbjct: 118 D-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVV-DIGKGSDRALAKFSGYMQLGDTCSSMGLL 174
+ L Y LG FE A ++++ + + + A + LG+T + +
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS----CYSLGNTYTLLQDY 279
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234
++++ + L I E L D C L A+ D+A + +K LEI RE G
Sbjct: 280 EKAIDYHLKHLAIAQE-LKDR-IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 52/313 (16%), Positives = 106/313 (33%), Gaps = 49/313 (15%)
Query: 215 QFDEAENLCKKILEIHRE-HGHSASLEEAADRRLMALVYEAKADYESALEHL-VLASMVM 272
A LCK+ LE + GH +H V +
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGH---------------------------DHPDVATML-- 46
Query: 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332
+ +Y ++ EA L + + T G+DH +VA+ LA
Sbjct: 47 -NI------------LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93
Query: 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392
LY + GK +E++ C+ AL + K P+ +A L ++ + + + EE ++
Sbjct: 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRR 152
Query: 393 AMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR-ASGESKSAFFG 450
A+++ G +A + + G+Y +A + ++ + + S +
Sbjct: 153 ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK 212
Query: 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510
+ + ++ E + C +L A Y G++E
Sbjct: 213 PIWMHAEEREESKDKRRDSAPYGEYG--SWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270
Query: 511 AIEILEYILKVRE 523
A + + + R+
Sbjct: 271 AHTLEDCASRNRK 283
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 55/324 (16%), Positives = 107/324 (33%), Gaps = 54/324 (16%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD-RALAKFSGYMQLGDTCSSMGLLD 175
S H L AVP+ ++++E ++ G D +A + L
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVA--TMLNILALVYRDQNKYK 60
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235
+ L I+ + LG P VA T LA + + ++ EAE LCK+ LEI
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------ 114
Query: 236 SASLEEAADRRLMALVYEAKADYESAL--EHL-VLASMVMIANGQENEVAAIDVSIGNIY 292
E L H V + N + +
Sbjct: 115 ----------------------REKVLGKFHPDVAKQL---NN------------LALLC 137
Query: 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352
+ + +E + Y++ L ++ G D +VA LA Y + GK +++++ + L
Sbjct: 138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197
Query: 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA--MKLLEDTPGYHSTIAGI 410
+ + + E+ ++ ++ + K + T+
Sbjct: 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD---SPTVNTT 254
Query: 411 EAQMGVMLYVVGRYGEARSSFESA 434
+G + G+ A + + A
Sbjct: 255 LRSLGALYRRQGKLEAAHTLEDCA 278
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 21/273 (7%)
Query: 90 KALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149
A+ +A + E+ SG ++ L++LA +Y +++EA +L ++ + +
Sbjct: 19 SAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL 77
Query: 150 GSD-RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
G D A+A + L G + + LEI+ + LG P VA+ LA
Sbjct: 78 GKDHPAVA--ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135
Query: 209 AHIQAMQFDEAENLCKKILEIHR-----EHGHSA-SLEEAADRRLMALVYEAKADYESAL 262
+ +E E ++ LEI+ + + A + +A Y + Y+ A
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN------LASCYLKQGKYQDAE 189
Query: 263 EHL--VLASMVMIANGQEN-EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319
+L G N + I + S + ++ + G + D
Sbjct: 190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS--WYKACKVD 247
Query: 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALR 352
+V + L LY R GKL + + + A R
Sbjct: 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 45/263 (17%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
+ L A+ ++ L + T G DH VA++ LA +Y K +E+
Sbjct: 8 HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTI 407
+AL + K P +A L ++ +Y +++EA L ++A+++ E G +H +
Sbjct: 68 DALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
Query: 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRIN 467
A LN + L C +
Sbjct: 127 A------------------------------------------KQLNNLALLCQNQGKAE 144
Query: 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL-KVREEKL 526
E + A + G + +NLA+ Y G+ +DA + + IL + E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 527 GTANPDIDDEKERLAELLKETGR 549
G+ N D E + +
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDK 227
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 24/97 (24%), Positives = 40/97 (41%)
Query: 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512
+ L A L ++A LE+ G H D + + LA Y + ++A
Sbjct: 4 SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63
Query: 513 EILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
+L L +RE+ LG +P + LA L + G+
Sbjct: 64 HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 4/117 (3%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSI-EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL 174
+ + LA+ Y G++++A + + + + GS K +M + S
Sbjct: 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI-WMHAEEREESKDKR 228
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231
S E +A P V T R L + + + + A L +
Sbjct: 229 RDSAPYGE--YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 9e-29
Identities = 50/349 (14%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLV-LA 268
I+ +AE L ++ + ++ L LM ++ DY +
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYS--LMCFRHQLMLDYLEPGKTYGNRP 79
Query: 269 SMVMIANGQENEVAAID--------VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320
++ + E + G + EAI Y++ D
Sbjct: 80 TVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDD 137
Query: 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL 380
+ A ++A+ YY + + S + AL + + L I+ Y+
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS--IRTIQSLFVIAGNYDDF 195
Query: 381 NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440
+++AL L+ A++L D IA + G A F+ A +
Sbjct: 196 KHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA---AKV 251
Query: 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500
S E VL + + + +A + EE + + + +
Sbjct: 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311
Query: 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
++ D + E ++ L + I+ A + + +
Sbjct: 312 ETVDERKIHDLLSYFE------KKNL---HAYIEACARSAAAVFESSCH 351
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 41/321 (12%), Positives = 101/321 (31%), Gaps = 15/321 (4%)
Query: 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALE 263
+ + + + + + + I L + + + +Y A+
Sbjct: 63 QLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIG 122
Query: 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323
+ A + + E A + Y + + +++ + L +++ +
Sbjct: 123 YYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRT 181
Query: 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383
+A Y ++ + E AL + IA L I+ Y+ +
Sbjct: 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQNDRFIAISLLNIANSYDRSGDD 238
Query: 384 EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443
+ A++ QKA K+ + + + + L G+ +A E + + A
Sbjct: 239 QMAVEHFQKAAKVSREK--VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296
Query: 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503
+ L + + +I++ FE+ H + AA ++
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---------HAYIEACARSAAAVFE 347
Query: 504 ALGRVEDAIEILEYILKVREE 524
+ E A +LK +E+
Sbjct: 348 SSCHFEQAAAFYRKVLKAQED 368
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 52/355 (14%), Positives = 117/355 (32%), Gaps = 22/355 (6%)
Query: 86 DNPNKALDYAIRASKSFERFSGSGQELELVMSL----HMLAAIYCSLGRFEEAVPVLERS 141
+ A + ++ Q+L + SL H L Y G+ P +
Sbjct: 26 FSVPDAEILKAEVEQDIQQMEED-QDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84
Query: 142 IEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAE 201
+E ++ + L K+ G ++ Y + + + D D AE
Sbjct: 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSD-DIEKAE 142
Query: 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESA 261
+AEA+ Q + + L+I++ H S+ ++A Y+ Y+ A
Sbjct: 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKA 201
Query: 262 LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL 321
L HL A + + + +A ++I N Y A+ +QK V + +
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL- 260
Query: 322 SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE-ISAIYEAL 380
+ L+ + G+ +++ + E L ++ + + +A+
Sbjct: 261 --PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI---------TARSHKFYKELFLFLQAV 309
Query: 381 NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ + + + E H+ I + + +A + + +
Sbjct: 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 39/257 (15%), Positives = 93/257 (36%), Gaps = 18/257 (7%)
Query: 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIY 125
D+ + F K+A E + ++ + ++A ++ + + SL ++A Y
Sbjct: 136 DDIEKAEFHFKVA-EAYYHMKQTHVSMYHILQALDIYQNHPL--YSIRTIQSLFVIAGNY 192
Query: 126 CSLGRFEEAVPVLERSIEVV-DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184
+++A+P LE ++E+ DI A++ + + ++ G +V ++
Sbjct: 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAIS----LLNIANSYDRSGDDQMAVEHFQKA 248
Query: 185 LEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAAD 244
++ E + + + L+ +A Q +A ++ L+ H E
Sbjct: 249 AKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFS 304
+ + + L + + A S ++ S C F++A
Sbjct: 306 LQAVYKETVDERKIHDLLSYF-------EKKNLHAYIEACARSAAAVFESSCHFEQAAAF 358
Query: 305 YQKGLTVFKATRGEDHL 321
Y+K L + + L
Sbjct: 359 YRKVLKAQEDILKGECL 375
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-26
Identities = 71/432 (16%), Positives = 143/432 (33%), Gaps = 79/432 (18%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
L +L++I+ R + + +I+ A A Y LG+ G L
Sbjct: 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----NPLLAEA----YSNLGNVYKERGQLQE 85
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
++ Y L + P + LA A + A + A L+ + +
Sbjct: 86 AIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL--- 134
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296
R + + +A E A + A I VA ++G ++ +
Sbjct: 135 -----YCVRSDLGNLLKALGRLEEAKACYLKA----IETQPNFAVAWS--NLGCVFNAQG 183
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
AI ++K +T+ + +I L ++ + + AL +
Sbjct: 184 EIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--S 233
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416
P A ++ +Y + A+ ++A++L P + +
Sbjct: 234 PNHAVV-------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC-------NLAN 279
Query: 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
L G EA + +A+ +L + LN + + I EA L+ +A
Sbjct: 280 ALKEKGSVAEAEDCYNTAL-RLCPT-------HADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536
LE + +SNLA+ G++++A+ + +++ +P D
Sbjct: 332 ---LE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADA 375
Query: 537 KERLAELLKETG 548
+ LKE
Sbjct: 376 YSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 7e-23
Identities = 72/429 (16%), Positives = 137/429 (31%), Gaps = 79/429 (18%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
LA G FE A + + D + L LDRS
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWR-----QEPDNTGV----LLLLSSIHFQCRRLDRSAHF 55
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
++ +P +AE L + + Q EA + L + +
Sbjct: 56 STLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF------- 100
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+A A D E A++ V A + ++ + +GN+ +L R +E
Sbjct: 101 -IDGYINLAAALVAAGDMEGAVQAYVSA----LQ--YNPDLYCVRSDLGNLLKALGRLEE 153
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360
A Y K + E + A + L ++ G++ + + E A+ + P
Sbjct: 154 AKACYLKAI--------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFL 203
Query: 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420
A + N + + + A+ +A+ L + H + + Y
Sbjct: 204 DAYINLGN-------VLKEARIFDRAVAAYLRALSLSPNHAVVHG-------NLACVYYE 249
Query: 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480
G A ++ A ++L+ F + A + + EA + + A L
Sbjct: 250 QGLIDLAIDTYRRA-IELQPH-------FPDAYCNLANALKEKGSVAEAEDCYNTA---L 298
Query: 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540
+NLA G +E+A+ + L+V P+ L
Sbjct: 299 R-----LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNL 345
Query: 541 AELLKETGR 549
A +L++ G+
Sbjct: 346 ASVLQQQGK 354
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 8e-22
Identities = 58/397 (14%), Positives = 123/397 (30%), Gaps = 84/397 (21%)
Query: 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219
G M+L G + + +P L+ H Q + D +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRS 52
Query: 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279
+ ++ + A + VY+ + + A+EH
Sbjct: 53 AHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHY-------------R 91
Query: 280 EVAAID-------VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332
+ +++ ++ + A+ +Y L + + + + L +
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGN 143
Query: 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392
L +G+L E+K+ A+ +P A A + ++ A E A+ +K
Sbjct: 144 LLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGC-------VFNAQGEIWLAIHHFEK 194
Query: 393 AMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452
A+ L + + +G +L + A +++ A + L + +V
Sbjct: 195 AVTLDPNFLDAYI-------NLGNVLKEARIFDRAVAAYLRA-LSLSPN-------HAVV 239
Query: 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512
+ + I+ A + + A +E Y NLA G V +A
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRA---IE-----LQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 513 EILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
+ L++ P D LA + +E G
Sbjct: 292 DCYNTALRL--------CPTHADSLNNLANIKREQGN 320
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 42/317 (13%), Positives = 110/317 (34%), Gaps = 14/317 (4%)
Query: 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270
++ M+ +E L +LEI ++ L E + + +Y SA++ A
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131
Query: 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330
+I E A + Y + + ++ ++ ++K ++ +
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLF 190
Query: 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL 390
A + + + ++ S+ + A + P+ + L I + +++E+A+
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247
Query: 391 QKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450
++A+ + E++ ++ + + Y +G+ +A + + +G+
Sbjct: 248 KRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306
Query: 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510
L + L+ I + E + D ++A Y +
Sbjct: 307 EFLKSLYLSGPDEEAIQGFFDFLESKML---------YADLEDFAIDVAKYYHERKNFQK 357
Query: 511 AIEILEYILKVREEKLG 527
A + +VR+ G
Sbjct: 358 ASAYFLKVEQVRQLIQG 374
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 16/316 (5%)
Query: 210 HIQAMQFDEAENLCKKILEIHR---EHGHSASLEEAADRRLMALVYEAKADYESALEHLV 266
+I+ +AE L ++I + E + R ++ + + +E
Sbjct: 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81
Query: 267 LASMVMIANGQENEVAAIDVS------IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320
S +++ ++ + G + + AI ++K + +D
Sbjct: 82 RLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDR 139
Query: 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL 380
+ A F ++++ YY + + S Y A + + + + + + L
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE--HEAYNIRLLQCHSLFATNFLDL 197
Query: 381 NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440
++E+A+ QKA + E + +G+ +Y +A F+ A+
Sbjct: 198 KQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256
Query: 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500
S S + +L +I++A E + ++ +L +L
Sbjct: 257 SNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314
Query: 501 TYDALGRVEDAIEILE 516
+ ++ + LE
Sbjct: 315 SGPDEEAIQGFFDFLE 330
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 5e-21
Identities = 32/310 (10%), Positives = 82/310 (26%), Gaps = 59/310 (19%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146
A+ + +A +E ++ Y + + ++
Sbjct: 118 EYLSAIKFFKKAESKLIFV---KDRIEKAEFFFKMSESYYYMKQTYFSMD---------- 164
Query: 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206
EI E + R+ +
Sbjct: 165 ---------------------------------YARQAYEIYKE-HEAYNIRLLQCHSLF 190
Query: 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLV 266
A + Q+++A + +K + + L +++ YE A+ +
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL--MGRTLYNIGLCKNSQSQYEDAIPYFK 248
Query: 267 LASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326
A V + + I I+ L + D+A + KG+ + +LS
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308
Query: 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386
L ++ + E+ + ++ + +++ Y ++A
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFLESKM----------LYADLEDFAIDVAKYYHERKNFQKA 358
Query: 387 LKLLQKAMKL 396
K ++
Sbjct: 359 SAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-20
Identities = 31/263 (11%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 60 IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119
D + F K++ ++DYA +A + ++ + L+
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEA--YNIRLLQCHS 188
Query: 120 MLAAIYCSLGRFEEAVPVLERSIEVV-DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
+ A + L ++E+A+ +++ + + +G +S + ++
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT----LYNIGLCKNSQSQYEDAI 244
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238
++ + + E+ + P + + + + H + + D+A K + ++ G
Sbjct: 245 PYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV-- 300
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298
++ + +Y + D E+ + + ++ + + Y F
Sbjct: 301 -IYLSEFEFLKSLYLSGPDEEAIQGFF----DFLESKMLYADLEDFAIDVAKYYHERKNF 355
Query: 299 DEAIFSYQKGLTVFKATRGEDHL 321
+A + K V + +G L
Sbjct: 356 QKASAYFLKVEQVRQLIQGGVSL 378
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 13/155 (8%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146
A+ Y ++ F S L + ++ I+ LG+ ++A + +
Sbjct: 239 QYEDAIPYF---KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295
Query: 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206
G L++F L + + ES + + + +
Sbjct: 296 K-AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY---------ADLEDFAIDV 345
Query: 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEE 241
A+ + + F +A K+ ++ + SL E
Sbjct: 346 AKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYE 380
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 1e-22
Identities = 49/317 (15%), Positives = 90/317 (28%), Gaps = 13/317 (4%)
Query: 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYE 259
AE A+ I DEAE L K LE + ++ V K +
Sbjct: 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELT 70
Query: 260 SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319
+L + + + + + I + A + +K + E
Sbjct: 71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130
Query: 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379
+ A L + +L E+++ + + V + P++ L + A
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS----YQPQQQLQCLAMLIQCSLA 186
Query: 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439
+ + A L + LL + + I+ + + G A +
Sbjct: 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246
Query: 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499
A+ F + A + L A + EE D L
Sbjct: 247 ANNH----FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLN 300
Query: 500 ATYDALGRVEDAIEILE 516
Y GR DA +L
Sbjct: 301 QLYWQAGRKSDAQRVLL 317
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 1e-19
Identities = 45/334 (13%), Positives = 104/334 (31%), Gaps = 19/334 (5%)
Query: 86 DNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145
NP++A A A G +++ +L + G ++ +++ +
Sbjct: 28 GNPDEAERLAKLA----LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ---QTE 80
Query: 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205
+ + D +Q + + G L + E ++ E + P R
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140
Query: 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHL 265
A+ + DEAE + +E+ + L+ A ++ A+ D ++A L
Sbjct: 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA---MLIQCSLARGDLDNARSQL 197
Query: 266 VLASMVMIANGQENE-VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324
++ ++ ++ + + A L ++ +
Sbjct: 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA----ANWLRHTAKPEFANNHFLQ 253
Query: 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
+ +A +G+ ++ E + L + +Y
Sbjct: 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL---NQLYWQAGRKS 310
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418
+A ++L A+KL T G+ S M L
Sbjct: 311 DAQRVLLDALKLANRT-GFISHFVIEGEAMAQQL 343
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 6e-18
Identities = 49/334 (14%), Positives = 103/334 (30%), Gaps = 21/334 (6%)
Query: 109 GQELELVMSLHML-------AAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGY 161
G E++ + M A + + G +EA + + ++E + G R +A
Sbjct: 1 GHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----T 56
Query: 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAEN 221
LG+ G L RS+ + ++ + D + +E A
Sbjct: 57 SVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWE 114
Query: 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281
+K ++ E R+ A + A A + A + ++++ Q +
Sbjct: 115 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQ 173
Query: 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341
+ ++ D A + + +++ + G
Sbjct: 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWISNANKVRVIYWQMTGDKA 232
Query: 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401
+ N LR AKP A I+ L E E A +L++ +
Sbjct: 233 AA----ANWLRHTAKPEFANNHFLQGQWRN-IARAQILLGEFEPAEIVLEELNENARSL- 286
Query: 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
S + + + + GR +A+ A+
Sbjct: 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 9e-07
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 5/140 (3%)
Query: 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469
A + G EA + A L + + +G + +
Sbjct: 16 FNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529
L ++ + Q L + A G ++ A E E ++ E+
Sbjct: 73 LALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130
Query: 530 NPDIDDEKERLAELLKETGR 549
P + A+LL R
Sbjct: 131 LPMHEFLVRIRAQLLWAWAR 150
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-21
Identities = 36/251 (14%), Positives = 72/251 (28%), Gaps = 53/251 (21%)
Query: 90 KALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV-VDIG 148
+A DYA+ ++ + ML +Y + RF+EA + + G
Sbjct: 4 EAHDYALAERQAQAL---LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60
Query: 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208
+ A Q+G G D + C+ E+ + +L + + +A
Sbjct: 61 DHTAEHRA----LHQVGMVERMAGNWDAARRCFLEEREL-LASLPEDPLAASANAYEVAT 115
Query: 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268
+ A +K L ++ D+ +A +
Sbjct: 116 VALHFGDLAGARQEYEKSLVYAQQAD---------DQVAIACAFR--------------- 151
Query: 269 SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328
+G++ EA + + +F ED +V +
Sbjct: 152 ------------------GLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMT 191
Query: 329 RLADLYYRIGK 339
RL L +
Sbjct: 192 RLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-20
Identities = 26/206 (12%), Positives = 64/206 (31%), Gaps = 14/206 (6%)
Query: 252 YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311
+EA + + + +G +Y + RFDEA S+Q
Sbjct: 3 FEAHDYALAERQ-------AQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55
Query: 312 FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371
+ + DH + ++ + G ++ + A P +
Sbjct: 56 AQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE--DPLAASANAY 111
Query: 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSF 431
E++ + + A + +K++ + IA +G + EA+ +
Sbjct: 112 EVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
Query: 432 ESAVVKLRASGESKSAFFGIVLNQMG 457
A +S++ ++ ++
Sbjct: 171 LRARDIFAELEDSEAV--NELMTRLN 194
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 6e-20
Identities = 24/208 (11%), Positives = 60/208 (28%), Gaps = 9/208 (4%)
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
EA + + L +Y + + E+++ + + K
Sbjct: 4 EAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK--- 58
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419
+ L ++ + + A + + +LL P + ++ +
Sbjct: 59 SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118
Query: 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479
G AR +E ++V + + + + +G Q + EA + + AR
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAI--ACAFRGLGDLAQQEKNLLEAQQHWLRAR-D 175
Query: 480 LEQECGSCHLDTLGVYSNLAATYDALGR 507
+ E + + L
Sbjct: 176 IFAELED-SEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444
EA + + +T +G +G + + R+ EAR+SF++ + + SG+
Sbjct: 4 EAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504
+ L+Q+G+ + A F E R L L +A
Sbjct: 63 TAE--HRALHQVGMVERMAGNWDAARRCFLEER-ELLASLPEDPLAASANAYEVATVALH 119
Query: 505 LGRVEDAIEILEYILKVREE---KLGTAN 530
G + A + E L ++ ++ A
Sbjct: 120 FGDLAGARQEYEKSLVYAQQADDQVAIAC 148
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 3e-20
Identities = 58/456 (12%), Positives = 135/456 (29%), Gaps = 89/456 (19%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSIEV--------VDIGKGS--------DRALAKFSGY 161
++ +Y +L F+ A + ++ V + D L
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST 262
Query: 162 MQLGDTCSSMGLLDRSVWCYESGLEIQ----IEALGDSDPRVAETCRYLAEAHIQAMQFD 217
D L + E++ + + + ++ A+ +F
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322
Query: 218 EAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277
+ + KILEI + L +
Sbjct: 323 DVLAITTKILEIDPYN--------LDVYPLHLASLHESGEKNKLYLIS------------ 362
Query: 278 ENEVAAID-------VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330
N++ +++G Y+ + + EA + K++ + A +I
Sbjct: 363 -NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS------KSSTMDPQFGPA--WIGF 413
Query: 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL 390
A + G+ ++ S A R+ + + L A + L
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARL--FQ-------GTHLPYLFLGMQHMQLGNILLANEYL 464
Query: 391 QKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450
Q + L + P + ++GV+ + A + F++A++ ++ + ++ +
Sbjct: 465 QSSYALFQYDPLLLN-------ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517
Query: 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510
+G A +L + A + + +L + V++ +A Y
Sbjct: 518 T-WANLGHAYRKLKMYDAAIDALNQGL-LLSTNDAN-------VHTAIALVYLHKKIPGL 568
Query: 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546
AI L L + +P+ + L L+E
Sbjct: 569 AITHLHESLAI--------SPNEIMASDLLKRALEE 596
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 4e-19
Identities = 58/425 (13%), Positives = 130/425 (30%), Gaps = 52/425 (12%)
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
++LA + G+ E A+ L ++ E++ + + MG L
Sbjct: 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM--QFDEAENLCKKILEIHREHGHS 236
+ + + E ++ Q + A+ +K LE ++
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN--- 171
Query: 237 ASLEEAADRRLMALV-YEAKADYESALEHLVLASMVMIANGQENEVAAID--VSIGNIYM 293
E +A + ++A++ L A I +N+ + + + +
Sbjct: 172 ---PEFTSGLAIASYRLDNWPPSQNAIDPLRQA----IRLNPDNQYLKVLLALKLHKMRE 224
Query: 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353
E ++ L E V + A Y R + ++ + AL
Sbjct: 225 EGEEEGEGEKLVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 354 CAKPAPATAPEEIAN-----GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
P A +I ++ + + L+L+ A+ L+ + +
Sbjct: 277 --IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334
Query: 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRIN 467
+ + + + + +Y EA F+ K E ++ + G L Q+ +
Sbjct: 335 RVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCED 389
Query: 468 EATELFEEA-------------RGVLEQ---ECGSCHLDTLGVYSNLAATYDALGRVEDA 511
+A F E + L++ S + LA + +++ A
Sbjct: 390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449
Query: 512 IEILE 516
E E
Sbjct: 450 DEDSE 454
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-16
Identities = 54/358 (15%), Positives = 104/358 (29%), Gaps = 35/358 (9%)
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE-H 233
+ S+ +E + + E A C LA Q + A +K E+ ++ H
Sbjct: 28 ENSLDDFEDKVFYRTEFQNREFK--ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH 85
Query: 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM--IANGQENEVAAIDVSIGNI 291
A + A VY ++ V ++ E +D G
Sbjct: 86 ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145
Query: 292 YMSLC--RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
+ + + A ++K L K E +A RL + + +
Sbjct: 146 RLKCGGNQNERAKVCFEKALEK-KPKNPEFTSGLAIASYRLDNW----PPSQNAIDPLRQ 200
Query: 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409
A+R+ P +A L ++ E E E KL+++A++
Sbjct: 201 AIRL--NPDNQYLKVLLALKLHKM---REEGEEEGEGEKLVEEALEKAPGVTDVLR---- 251
Query: 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF--GIVLNQMGLACL-----Q 462
+A + A L + G +
Sbjct: 252 ---SAAKFYRRKDEPDKAIELLKKA---LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305
Query: 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520
+Y + EL A L++ + + V S LA+ + + E+A +
Sbjct: 306 MYGKRKLLELIGHAVAHLKK-ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 42/310 (13%), Positives = 104/310 (33%), Gaps = 30/310 (9%)
Query: 258 YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317
E++L+ A + + + + + A+ +K + +
Sbjct: 27 GENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA 86
Query: 318 -EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE-IANGLTEISA 375
+ + + A +YY +G+L + + Y + VC K + E + +
Sbjct: 87 DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146
Query: 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ N++E A +KA++ P + S + + Y + + ++++ +
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTS-------GLAIASYRLDNWPPSQNAIDPLR 199
Query: 436 VKLRASGESKSAFF--GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493
+R + +++ + L++M + E +L EEA LE+
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMRE---EGEEEGEGEKLVEEA---LEK-----APGVTD 248
Query: 494 VYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553
V + A Y + AIE+L+ L+ P+ ++ +
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 554 KGKSLENLLD 563
++
Sbjct: 301 LRENGMYGKR 310
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 44/314 (14%), Positives = 95/314 (30%), Gaps = 48/314 (15%)
Query: 121 LAAIYCSLGRF---EEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRS 177
LA L + + A+ L ++I + D K ++L
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE----H 233
E LE P V + R A+ + + + D+A L KK LE H
Sbjct: 233 EKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM---IANGQENEVAAIDVSIGN 290
A ++M L LE + A + + +
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI--LAS 342
Query: 291 IYMSLCRFDEAIFSYQKGLT--VFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
++ +++EA + +QK + + + HL + Y++ ++ +
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF------QLYQMKCEDKAIHHFI 396
Query: 349 NALRVCAKPAPA----TAPEEIANGLTEISA-----------IYEALNEHEEALKLLQKA 393
+++ K ++IA + + E + ++A + ++
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 394 MKLLEDTPGYHSTI 407
++ P S
Sbjct: 457 LESGSLIPSASSWN 470
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 6e-19
Identities = 66/475 (13%), Positives = 137/475 (28%), Gaps = 104/475 (21%)
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
++A Y S G E+ + +++E+ D + A ++ S+G ++
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIK-----PDHSKA----LLRRASANESLGNFTDAM 113
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC-KKILEIHREHGHSA 237
+ + GD D E +E + + ++ + A
Sbjct: 114 FDLS-----VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168
Query: 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV----------- 286
S D L ++Y++A L A + + E + A D+
Sbjct: 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228
Query: 287 -------------------SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327
G + +A Q+ + + + +
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---------PNSY 279
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
I LA +E + + A+ + P E +Y L +++ A
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDL--NP-------EYPPTYYHRGQMYFILQDYKNAK 330
Query: 388 KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447
+ QKA L + + Q+ +LY G++ E+ + F +K
Sbjct: 331 EDFQKAQSLNPENVYPYI-------QLACLLYKQGKFTESEAFFNETKLK-----FPTLP 378
Query: 448 FFGIVLNQMGLACLQLYRINEATELFEEA-------------RGVLEQECGSCHLDTLGV 494
V + A + ++ A G L L
Sbjct: 379 ---EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG-----KATILAR 430
Query: 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
S+ T + AI++L ++ +P + K LA+L + +
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEK 477
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 6e-18
Identities = 52/422 (12%), Positives = 126/422 (29%), Gaps = 64/422 (15%)
Query: 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188
G P + + + + A+ G+ + + ++ Y+ +E+
Sbjct: 1 GSHMNGEPDIAQLKGL-SPSQRQAYAVQ----LKNRGNHFFTAKNFNEAIKYYQYAIEL- 54
Query: 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248
DP ++ +I ++ K LEI +H +A RR
Sbjct: 55 -------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRR-- 99
Query: 249 ALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKG 308
A E+ ++ A+ L S++ + + + ++ +E + +
Sbjct: 100 ASANESLGNFTDAMFDL---SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156
Query: 309 LTVFKATRGEDHLSVASIFIRLA-DLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
+ + L + + +AL+ + +A
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVA 214
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427
N L + ++ + + L L E+ G+ ++ +A
Sbjct: 215 NDL-----LTKSTDMYHSLLSANTVDDPLRENAALALC-------YTGIFHFLKNNLLDA 262
Query: 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487
+ + + + L + S + L E + F++A ++
Sbjct: 263 QVLLQES-INLHPTPNS--------YIFLALTLADKENSQEFFKFFQKA---VDL----- 305
Query: 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547
+ + Y + Y L ++A E + + NP+ +LA LL +
Sbjct: 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQ 357
Query: 548 GR 549
G+
Sbjct: 358 GK 359
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 5e-16
Identities = 53/420 (12%), Positives = 112/420 (26%), Gaps = 78/420 (18%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
+ + F EA+ + +IE + + Y + S G L++ +
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIE-----LDPNEPVF----YSNISACYISTGDLEKVIEF 81
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
LEI P ++ A A+ F +A + G S
Sbjct: 82 TTKALEI--------KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133
Query: 241 EAADRRLMAL-----------------------VYEAKADYESALEHLVLASMVMIANGQ 277
+ A+ + ++S LE + +
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193
Query: 278 ENEVAAIDV----SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333
A+ + ++ ++ Y L+ + A
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIF 252
Query: 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393
++ L +++ + ++ + P N ++ +E K QKA
Sbjct: 253 HFLKNNLLDAQVLLQESINL--HPT--------PNSYIFLALTLADKENSQEFFKFFQKA 302
Query: 394 MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVL 453
+ L + P + G M +++ Y A+ F+ A L
Sbjct: 303 VDLNPEYPPTYY-------HRGQMYFILQDYKNAKEDFQKA-QSLNPE-------NVYPY 347
Query: 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
Q+ + + E+ F E + V + A G + AI+
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETK--------LKFPTLPEVPTFFAEILTDRGDFDTAIK 399
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 6e-16
Identities = 58/448 (12%), Positives = 120/448 (26%), Gaps = 90/448 (20%)
Query: 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG 129
G F L ++++ N + A A + + G + + S
Sbjct: 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK-------STD 223
Query: 130 RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189
+ + + + ALA G L + + + +
Sbjct: 224 MYHSLLSANTVDDPL-----RENAALA----LCYTGIFHFLKNNLLDAQVLLQESINL-- 272
Query: 190 EALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMA 249
P + +LA E +K ++++ E+ R
Sbjct: 273 ------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHR--G 317
Query: 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309
+Y DY++A E A + EN I + + +F E+ + +
Sbjct: 318 QMYFILQDYKNAKEDFQKA----QSLNPENVYPYI--QLACLLYKQGKFTESEAFFNETK 371
Query: 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369
F ++ + A++ G + + A R+ + I
Sbjct: 372 LKFP--------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPL 421
Query: 370 LTEISAI---------YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420
+ + + + + A+KLL KA +L + +A ++ QM
Sbjct: 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM------ 475
Query: 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480
+ EA FE + + R E + +I +
Sbjct: 476 -EKIDEAIELFEDSAILARTMDE---KLQATTFAEAA-------KIQKRLRADPII---- 520
Query: 481 EQECGSCHLDTLGVYSNLAATYDALGRV 508
A Y A G +
Sbjct: 521 -----------SAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 53/445 (11%), Positives = 110/445 (24%), Gaps = 106/445 (23%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVD-----IGKGSDRALAKFS----------GYMQLG 165
A+ SLG F +A+ L D I +R L K + +
Sbjct: 99 RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158
Query: 166 DTCSSMGLLDRSVWCYESGLEIQ-----------IEALGD---SDPRVAETCRYLAEAHI 211
S L ++S LE+ L D + +A +
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL 218
Query: 212 QAMQ--FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLAS 269
+ + + + + + K + A L
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRENAALALCY--------TGIFHFLKNNLLDAQVLL---- 266
Query: 270 MVMIANGQENEVAAID------VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323
E + + + E +QK + + +
Sbjct: 267 ---------QESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEY 309
Query: 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383
+ +Y+ + + +K + A + P ++A + +
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLAC-------LLYKQGKF 360
Query: 384 EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL----- 438
E+ + P + +L G + A ++ A +L
Sbjct: 361 TESEAFFNETKLKFPTLPEVPT-------FFAEILTDRGDFDTAIKQYDIAK-RLEEVQE 412
Query: 439 -----RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ--ECGSCHLDT 491
K+ +Q L + N A +L +A E
Sbjct: 413 KIHVGIGPLIGKATILARQSSQ-DPTQLDEEKFNAAIKLLTKA---CELDPRSEQA---- 464
Query: 492 LGVYSNLAATYDALGRVEDAIEILE 516
LA + ++++AIE+ E
Sbjct: 465 ---KIGLAQLKLQMEKIDEAIELFE 486
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 49/363 (13%), Positives = 99/363 (27%), Gaps = 70/363 (19%)
Query: 180 CYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG----- 234
Y E I D + LAE H F L ++E H
Sbjct: 2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV 61
Query: 235 HSASLEEAADRRLMALVYEAKADYESALE--------HLVLASMVMIANGQENEVA---- 282
H +L E E ++ + + G +NE A
Sbjct: 62 HIGTLVELNKAN------ELFYLSHKLVDLYPSNPVSWFAVG-CYYLMVGHKNEHARRYL 114
Query: 283 --AIDV---------SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLA 331
A + + G+ + D+A+ +Y + K + +
Sbjct: 115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-----GC---HLPMLYIG 166
Query: 332 DLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391
Y + ++ + AL + + + E+ + E + A K
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFV---------MHEVGVVAFQNGEWKTAEKWFL 217
Query: 392 KAMKLLEDTPGYHSTIAGIEA--QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449
A++ ++ + +G + + +Y EA A L ++ S +
Sbjct: 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA---LVLIPQNASTY- 273
Query: 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509
+ +G + A + F A G L ++ + L +
Sbjct: 274 ----SAIGYIHSLMGNFENAVDYFHTALG-LRRDDTFS-------VTMLGHCIEMYIGDS 321
Query: 510 DAI 512
+A
Sbjct: 322 EAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRS 177
+H + + G ++ A ++E + LG C + +
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237
+ + L + P+ A T + H F+ A + L + R+ S
Sbjct: 256 LDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Query: 238 SLEEAADRRLMALVYEAKADYESAL 262
+ ++ E A
Sbjct: 308 T--------MLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 25/214 (11%), Positives = 54/214 (25%), Gaps = 46/214 (21%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
+ ++A+ + + + KG + +G +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ---LMKGCHLP------MLYIGLEYGLTNNSKLAERF 181
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
+ L I P + Q ++ AE LE + G+ +++
Sbjct: 182 FSQALSIA--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 241 EAADRRL-MALVY-------EAKADYESALE-----HLVLASMVMIANGQENEVAAID-- 285
+ + V EA + AL +++ I + N A+D
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293
Query: 286 --------------VSIGNIYMSLCRFDEAIFSY 305
+G+ EA
Sbjct: 294 HTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-17
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 4/155 (2%)
Query: 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA 256
L H F +A ++ L I +E G A+ E + Y
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLG 63
Query: 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316
++E+A E+ ++ A S+GN Y L +++AI + K L + +
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL- 122
Query: 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL 351
+D + L + Y +G ++ + E L
Sbjct: 123 -KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-17
Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307
+ + ++ A+ ++ G + ++GN Y+ L F+ A Y+K
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
L + + +D A L + Y + ++ Y L + +
Sbjct: 75 TLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGEG 129
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
+ Y AL H++A+ +K +++ +
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-16
Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 6/159 (3%)
Query: 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335
G ++GN + L F +A+ ++++ L + K D + + L + Y
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYI 60
Query: 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395
+G+ + Y + L + + A + Y L ++E+A+ K +
Sbjct: 61 FLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117
Query: 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
+ ++ +G +G + +A E
Sbjct: 118 IAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-15
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 6/166 (3%)
Query: 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLA 207
G GS A + + LG+T +G +V +E L I E GD L
Sbjct: 1 GPGSRAAQGRA--FGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGD-KAAERIAYSNLG 56
Query: 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVL 267
A+I +F+ A KK L + R+ A EA + Y DYE A+++ +
Sbjct: 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLK 114
Query: 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313
+ S+GN Y +L D+A+ +K L + +
Sbjct: 115 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 5/159 (3%)
Query: 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG 425
+ + L +A+ ++ + + ++ G + + +G +G +
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFE 66
Query: 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485
A ++ ++ R + +G L +A + + + QE
Sbjct: 67 TASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELK 123
Query: 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
+ +L Y ALG + A+ E L++ E
Sbjct: 124 D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-09
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV- 145
N A+ + + F G + ++ L Y LG FE A ++++ +
Sbjct: 24 NFRDAVIAHEQRLLIAKEF---GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80
Query: 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205
+ + A + LG+T + + ++++ + L I + L D C
Sbjct: 81 QLKDRAVEAQS----CYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELKDR-IGEGRACWS 134
Query: 206 LAEAHIQAMQFDEAENLCKKILEIHREHG 234
L A+ D+A + +K LEI RE G
Sbjct: 135 LGNAYTALGNHDQAMHFAEKHLEISREVG 163
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLAC 460
PG + +G Y++G + +A + E ++ + G+ + I + +G A
Sbjct: 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAY 59
Query: 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520
+ L A+E +++ + Q +L TY L E AI+ L
Sbjct: 60 IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117
Query: 521 VREE 524
+ +E
Sbjct: 118 IAQE 121
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-17
Identities = 44/352 (12%), Positives = 109/352 (30%), Gaps = 53/352 (15%)
Query: 87 NPNKALDYAIRAS--KSFERFSGSGQELELVMSL--------HMLAAIYCSLGRFEEAVP 136
+P+ + Y RA+ + + + +L V+ L + G+ +EA
Sbjct: 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115
Query: 137 VLERSIEV------VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190
++ ++ + + G ++ + LE+
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--- 172
Query: 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL 250
AE AE I+ + +A + K ++ ++ EA + +
Sbjct: 173 -----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKI--ST 219
Query: 251 VYEAKADYESALEHLVLA-------SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF 303
+Y D+E +L + Q ++ + + + R+ +A
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL-IESAEELIRDGRYTDATS 278
Query: 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363
Y+ + T R+ + + K E+ C L++ +P
Sbjct: 279 KYESVM----KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EP------ 326
Query: 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415
+ N L + + Y ++EA++ + A + E+ + + +
Sbjct: 327 -DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 5e-17
Identities = 66/435 (15%), Positives = 146/435 (33%), Gaps = 68/435 (15%)
Query: 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI 211
+++A +++LG + G L ++ + + ++ DP A +
Sbjct: 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFL 71
Query: 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA--- 268
+ A K++++ + A +R + + + A +
Sbjct: 72 AMGKSKAALPDLTKVIQLKMDF------TAARLQR--GHLLLKQGKLDEAEDDFKKVLKS 123
Query: 269 ------SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322
+ +++ S + AI K L V
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD------- 176
Query: 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382
A + A+ + + G+ R++ S + A ++ K A +IS +Y L +
Sbjct: 177 -AELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEA-------FYKISTLYYQLGD 226
Query: 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEA-----QMGVMLYVVGRYGEARSSFESAVVK 437
HE +L +++ +KL +D + ++ + L GRY +A S +ES +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-- 284
Query: 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497
+ S + + ++ + + EA + E L+ E + + +
Sbjct: 285 --KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV---LQMEPDNVN-----ALKD 334
Query: 498 LAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKS 557
A Y ++AI+ E + E + I + E+ LLK++ + K
Sbjct: 335 RAEAYLIEEMYDEAIQDYETAQEHNEN-----DQQIREGLEKAQRLLKQSQKRDYYKILG 389
Query: 558 LENLLDS----NAYR 568
++ AYR
Sbjct: 390 VKRNAKKQEIIKAYR 404
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 46/383 (12%), Positives = 107/383 (27%), Gaps = 73/383 (19%)
Query: 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294
+ S+ + + A AL A + G + A ++++
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----VD-GDPDNYIAY-YRRATVFLA 72
Query: 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354
+ + A+ K + + + A ++ L + GKL E++ + L+
Sbjct: 73 MGKSKAALPDLT------KVIQLKMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 355 AKPAPATAPEEIANGLTEISA------IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
+ E+ ++ A+ L K +++ A
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184
Query: 409 GI--------EAQ-------------------MGVMLYVVGRYGEARSSFESAVVKLRAS 441
+A + + Y +G + + S L+
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC---LKLD 241
Query: 442 GESKSAF--FGIVLN-----QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494
+ K F + V + ++ R +AT +E ++ E S T+
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTE-PSIAEYTVRS 297
Query: 495 YSNLAATYDALGRVEDAIEILEYILKVREE------KLGTANPDIDDEKE------RLAE 542
+ + + +AI + +L++ + A + E E
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357
Query: 543 LLKETGRARNRKGKSLENLLDSN 565
+ + R K+ L S
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQ 380
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 40/234 (17%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
G + + +++ +K + L G+L ++ S
Sbjct: 10 GVDLGTENLYFQSMADVEK-------------------HLELGKKLLAAGQLADALSQFH 50
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
A+ A + ++ A+ + + AL L K ++L D
Sbjct: 51 AAVDGDPDNYIA---------YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL--- 98
Query: 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468
Q G +L G+ EA F+ + + E K A ++ +
Sbjct: 99 ----QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154
Query: 469 ATELFEEARGVLEQ--ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520
+ + A L++ E + + A + G AI L+ K
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAE---LRELRAECFIKEGEPRKAISDLKAASK 205
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 61/445 (13%), Positives = 134/445 (30%), Gaps = 69/445 (15%)
Query: 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMG 172
+ ++L + ++++A+ ++E+ + + Y L S+G
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVF----YSNLSACYVSVG 53
Query: 173 LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232
L + V LE+ P ++ A A+ +F +A +
Sbjct: 54 DLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN--G 103
Query: 233 HGHSASLEEAADRRL----MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288
+ AS+E +R L M+ + E D ++A S ++ + V+
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163
Query: 289 GNIYMSLCRFDEAIFSYQKGL----TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESK 344
+ + + + +Y + + S S E
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 345 SYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH 404
++ K A + E N+ A + ++KA++L Y
Sbjct: 224 DKNNEDEKL--KEKLAISLEHTGI-------FKFLKNDPLGAHEDIKKAIELFPRVNSYI 274
Query: 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY 464
M +++ E + F+ A +KL ++ V G L
Sbjct: 275 --------YMALIMADRNDSTEYYNYFDKA-LKLDSN-------NSSVYYHRGQMNFILQ 318
Query: 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
++A + F++A E + + Y LA + +D + +
Sbjct: 319 NYDQAGKDFDKA---KE-----LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--- 367
Query: 525 KLGTANPDIDDEKERLAELLKETGR 549
P+ + AE+L +
Sbjct: 368 -----FPEAPEVPNFFAEILTDKND 387
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 52/399 (13%), Positives = 114/399 (28%), Gaps = 56/399 (14%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L+A Y S+G ++ V + +++E+ +K ++ +G +++
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALEL-------KPDYSK--VLLRRASANEGLGKFADAMFD 95
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
+ GD + E + E E + E
Sbjct: 96 LS-----VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+ + V + + L A E + ++ S +D+
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFA---NYDESNEADKELMNGLSNLYKRSPESYDK 207
Query: 301 AIFSYQKGLTVFKA------TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354
A S+ K +F+ + +A + + + A+ +
Sbjct: 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL- 266
Query: 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414
P N ++ I N+ E KA+KL S + +
Sbjct: 267 -FPR--------VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYHR 310
Query: 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474
G M +++ Y +A F+ A +L Q+ + + ++ LF
Sbjct: 311 GQMNFILQNYDQAGKDFDKA-KELDPE-------NIFPYIQLACLAYRENKFDDCETLFS 362
Query: 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
EA+ + V + A + A++
Sbjct: 363 EAK--------RKFPEAPEVPNFFAEILTDKNDFDKALK 393
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 51/433 (11%), Positives = 112/433 (25%), Gaps = 75/433 (17%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIG-KGSDRALAKFSGYMQLGDTCSSMGLLDRSVW 179
A+ LG+F +A+ L D + L + + G +D +
Sbjct: 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138
Query: 180 CYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239
+ D + + + + + E +E + S
Sbjct: 139 TPTELSTQPAKERKDKQENLPSVTSM--ASFFGIFKPELTFANYDESNEADKELMNGLS- 195
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-VSIGNIYMSLCRF 298
+R +A + A + + E AI G
Sbjct: 196 --NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253
Query: 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358
A +K + +F + +I +A + E +Y + AL++
Sbjct: 254 LGAHEDIKKAIELFPR---------VNSYIYMALIMADRNDSTEYYNYFDKALKL--DS- 301
Query: 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418
++ + L +++A K KA +L + + Q+ +
Sbjct: 302 ------NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI-------QLACLA 348
Query: 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA-- 476
Y ++ + + F A K V N ++A + ++ A
Sbjct: 349 YRENKFDDCETLFSEAK--------RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 477 -----------RG-VLEQECGSCHLDTLG---------------------VYSNLAATYD 503
++ + T+ LA
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 504 ALGRVEDAIEILE 516
+++AI + E
Sbjct: 461 QQEDIDEAITLFE 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 48/309 (15%)
Query: 131 FEEAVPVLERSIEVVD--IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188
F +A + E ++ + A++ G + + +E+
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAIS----LEHTGIFKFLKNDPLGAHEDIKKAIEL- 266
Query: 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248
PR + Y+A E N K L++ + R
Sbjct: 267 -------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS------SVYYHR-- 310
Query: 249 ALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKG 308
+ +Y+ A + A EN I + + +FD+ + +
Sbjct: 311 GQMNFILQNYDQAGKDFDKA----KELDPENIFPYI--QLACLAYRENKFDDCETLFSEA 364
Query: 309 LTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368
F + A++ ++ + A+ + + IA
Sbjct: 365 KRKFP--------EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAP 414
Query: 369 GLTEISAIY--EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE 426
+ + + + + EA LL+KA KL + +A ++ Q E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ-------EDIDE 467
Query: 427 ARSSFESAV 435
A + FE +
Sbjct: 468 AITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 44/339 (12%)
Query: 61 DESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQEL--ELVMSL 118
DES+ + +L L L + + S D +++ A R + + ++L +L +SL
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
A ++++IE+ + + Y+ + +
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP----------RVNSYIYMALIMADRNDSTEYY 290
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238
++ L++ D + + + + +D+A K E+ E+
Sbjct: 291 NYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN----- 337
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298
+ A + + ++ A E I F
Sbjct: 338 -IFPYIQL--ACLAYRENKFDDCETLFSEA----KRKFPEAPEVPNF--FAEILTDKNDF 388
Query: 299 DEAIFSYQKGLTVF-KATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357
D+A+ Y + + K ++ L + E+ + E A ++ P
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DP 446
Query: 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
A +A + + +EA+ L +++ L
Sbjct: 447 RSEQAKIGLAQ-------MKLQQEDIDEAITLFEESADL 478
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 42/351 (11%), Positives = 109/351 (31%), Gaps = 51/351 (14%)
Query: 87 NPNKALDYAIRAS--KSFERFSGSGQELELVMSL--------HMLAAIYCSLGRFEEAVP 136
+P+ + Y RA+ + + + +L V++L + G+ +EA
Sbjct: 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 92
Query: 137 VLERSIEV------VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190
++ ++ + + ++ + LE+
Sbjct: 93 DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--- 149
Query: 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL 250
AE AE I+ + +A + K ++ ++ EA ++
Sbjct: 150 -----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEA--FYKIST 196
Query: 251 VYEAKADYESALEHLVLA------SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFS 304
+Y D+E +L + A+ ++ + + + R+ +A
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256
Query: 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364
Y+ + R+ + + K E+ C L++ +P
Sbjct: 257 YESVMKT----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EP------- 303
Query: 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415
+ N L + + Y ++EA++ + A + E+ + + +
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 58/412 (14%), Positives = 127/412 (30%), Gaps = 77/412 (18%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+++LG + G L ++ + + ++ DP A + + A
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 57
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA---------SMV 271
K++ + A +R + + + A +
Sbjct: 58 PDLTKVIAL------KMDFTAARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109
Query: 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLA 331
+ + + S + AI K L V A + A
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-----CVWD---AELRELRA 161
Query: 332 DLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391
+ + + G+ R++ S + A ++ K A +IS +Y L +HE +L ++
Sbjct: 162 ECFIKEGEPRKAISDLKAASKL--KSDNTEA-------FYKISTLYYQLGDHELSLSEVR 212
Query: 392 KAMKLLEDTPGYHSTIA--------GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443
+ +KL D + A + L GRY +A S +ES ++
Sbjct: 213 ECLKL--D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPS 266
Query: 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT--LGVYSNLAAT 501
++ + + EA + E L+ ++ + + A
Sbjct: 267 VAEYTV-RSKERICHCFSKDEKPVEAIRICSEV---LQ-------MEPDNVNALKDRAEA 315
Query: 502 YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553
Y ++AI+ E + N + +E L + + +++ R
Sbjct: 316 YLIEEMYDEAIQDYEAAQEH--------NENDQQIREGLEKAQRLLKQSQKR 359
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 55/369 (14%), Positives = 110/369 (29%), Gaps = 69/369 (18%)
Query: 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYE 259
E L + + A Q +A + ++ ++ A V+ A +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN--------YIAYYRRATVFLAMGKSK 54
Query: 260 SALEHLVLASMVMIANGQENEVAAID-------VSIGNIYMSLCRFDEAIFSYQKGL--- 309
+AL L +V A+ + G++ + + DEA ++K L
Sbjct: 55 AALPDL-------------TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 310 ---TVFKATRGE-DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE 365
K + A + + ++ + L VC A
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL----- 156
Query: 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG 425
+ + E +A+ L+ A KL D ++ + Y +G +
Sbjct: 157 ----RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-------YKISTLYYQLGDHE 205
Query: 426 EARSSFESAVVKL-----RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480
+ S +KL R K L + ++ R +AT +E +
Sbjct: 206 LSLSEVREC-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---M 261
Query: 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540
+ E S T+ + + + +AI I +L++ PD + +
Sbjct: 262 KTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDR 312
Query: 541 AELLKETGR 549
AE
Sbjct: 313 AEAYLIEEM 321
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 52/325 (16%), Positives = 107/325 (32%), Gaps = 46/325 (14%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
A ++ ++G+ + A+P L + I + A +Q G G LD +
Sbjct: 43 RATVFLAMGKSKAALPDLTKVIA---LKMDFTAA------RLQRGHLLLKQGKLDEAEDD 93
Query: 181 YESGLEIQ------IEALGD-SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233
++ L+ EA + R A + A KILE+
Sbjct: 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---- 149
Query: 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM 293
E R L A + + + A+ L AS + + + A I +Y
Sbjct: 150 --CVWDAEL--RELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAF-YKISTLYY 199
Query: 294 SLCRFDEAIFSYQKGLTV----FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
L + ++ ++ L + + + + I A+ R G+ ++ S E+
Sbjct: 200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259
Query: 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409
++ +P + E I + + EA+++ + +++ D
Sbjct: 260 VMKT--EP---SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD--- 311
Query: 410 IEAQMGVMLYVVGRYGEARSSFESA 434
+ Y EA +E+A
Sbjct: 312 ----RAEAYLIEEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 55/403 (13%), Positives = 117/403 (29%), Gaps = 60/403 (14%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
L + G+ +A+ +++ D +A Y + +MG
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVD-----GDPDNYIA----YYRRATVFLAMGKSKA 55
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI------- 229
++ + + ++ + DEAE+ KK+L+
Sbjct: 56 ALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
Query: 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289
+E R AL ADY +A+ L + +
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI----LEVCVWDAELRE--LRA 161
Query: 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
++ +AI + A++ + + A F +++ LYY++G S S
Sbjct: 162 ECFIKEGEPRKAISDLK------AASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRE 213
Query: 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNE---HEEALKLLQKAMKLLEDTPGYHST 406
L++ A + L ++ E L + +A + MK P
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEY 270
Query: 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466
+ ++ + EA +++ L A L
Sbjct: 271 TVRSKERICHCFSKDEKPVEAIRICSEV-LQMEPD-------NVNALKDRAEAYLIEEMY 322
Query: 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509
+EA + +E A+ + + + L L + +
Sbjct: 323 DEAIQDYEAAQ--------EHNENDQQIREGLEKAQRLLKQSQ 357
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 54/490 (11%), Positives = 117/490 (23%), Gaps = 87/490 (17%)
Query: 87 NPNKALDYAIRASKSFERFSGSGQELEL----VMSLHMLAAIYCSLGRFEEAVPVLERSI 142
+AL+ R Q L V+++ +L + +PVL ++
Sbjct: 80 GGKQALETVQRLLPVLC------QAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133
Query: 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAET 202
+ ++ +A ++ + + + P
Sbjct: 134 GLT-----PEQVVA----IASHDGGKQALETVQALLPVLCQAHGL--------TPEQVVA 176
Query: 203 CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESAL 262
+ + + + +A + L
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQALETVQRLL 228
Query: 263 EHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322
L A + VA S G +L + + +
Sbjct: 229 PVLCQA----HGLTPQQVVAIA--SNGGGKQALETVQRLLPVLCQAHGL-------TPQQ 275
Query: 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382
V +I + + ++ A + P A + +AL
Sbjct: 276 VVAIASN-SGGKQALETVQRLLPVLCQAHGL--TPQQVVA-------IASNGGGKQALET 325
Query: 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442
+ L +L +A L TP IA + A +
Sbjct: 326 VQRLLPVLCQAHGL---TPQQVVAIAS----HDGGKQALETVQRLLPVLCQA---HGLTP 375
Query: 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502
E A + G L + + +A G+ + + ++
Sbjct: 376 EQVVA-----IASNGGGKQALETVQRLLPVLCQAHGL--------TPEQVVAIASHDGGK 422
Query: 503 DALGRVEDAIEILEYILKVREEK------LGTANPDIDDEKERLAELLKETGRARNRKGK 556
AL V+ + +L + ++ G P ++ +L+ N
Sbjct: 423 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482
Query: 557 SLENLLDSNA 566
+L L A
Sbjct: 483 ALACLGGRPA 492
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 10/227 (4%)
Query: 211 IQAMQFDEAENLCKKILEIHR--EHGHSASLEEAADR-RLMALVYEAKADYESALEHLVL 267
I A + EA K + + + AA A+ ++ E A + +
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327
+ N A G + L R EA+ +K ++ + A
Sbjct: 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY--VENGTPDTAAMAL 119
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
R L L ++ + A V + A + + S + + +EA
Sbjct: 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVRQQKFDEAA 175
Query: 388 KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
LQK + ++ Y + ++ Y A+ +
Sbjct: 176 ASLQKEKSMYKEMENYPT-CYKKCIAQVLVQLHRADYVAAQKCVRES 221
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 1e-12
Identities = 23/229 (10%), Positives = 63/229 (27%), Gaps = 12/229 (5%)
Query: 84 SGDNPNKALDYAIRASKSFER--FSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERS 141
+ ++A ++ +A K + A + + + E+A +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 142 IEV-VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200
E + A A + Q G + + +V E + +E P A
Sbjct: 63 AEAHANNRSLFHAAKA----FEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTA 115
Query: 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYES 260
A ++ + +A +L ++ + A + + + ++
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ--AAELIGKASRLLVRQQKFDE 173
Query: 261 ALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309
A L + ++ + + + A ++
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 8e-10
Identities = 38/294 (12%), Positives = 79/294 (26%), Gaps = 69/294 (23%)
Query: 293 MSLCRFDEAIFSYQKGLTVFKAT---RGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
++ + EA K K + D+ S AS + + A + +L ++K
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409
A + A + + + L EA++ ++KA + + G T A
Sbjct: 62 EAEAHAN---NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-GTPDTAAM 117
Query: 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469
+ G L +A ++ A + A
Sbjct: 118 ALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAA--------------------- 155
Query: 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE----- 524
+ + + ++A L+ + +E
Sbjct: 156 -----------------------ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 525 -------KLGT---ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568
D ++ + E G + + +LE+LL AY
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQ--AYD 244
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-13
Identities = 30/220 (13%), Positives = 63/220 (28%), Gaps = 6/220 (2%)
Query: 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK 255
D + + + ++ E N L+ H + + +A K
Sbjct: 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW--QYYVAAYVLKK 128
Query: 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315
DYE + L + + I+ +I NIY + I +++ L +A
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISA 375
+ + A Y + ES A+ + + + I +
Sbjct: 189 HDNEEF-DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQLYYQRGE 244
Query: 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415
L E ++ K D H+ + ++
Sbjct: 245 CLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKIS 284
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 7/194 (3%)
Query: 100 KSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159
++ + + + + +AA +E + L++ +
Sbjct: 100 NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN---QQLTGIDVYQNLY 156
Query: 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219
+ + + G L + + +E L+ Q+EAL D++ + A+A +++E+
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215
Query: 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEA-KADYESALEHLVLASMVMIANGQE 278
K +EI A + + + + + AS
Sbjct: 216 LYQVNKAIEISCRINSMALIGQLY--YQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273
Query: 279 NEVAAIDVSIGNIY 292
A+ I +
Sbjct: 274 AYKEALVNKISRLE 287
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 22/151 (14%), Positives = 39/151 (25%), Gaps = 5/151 (3%)
Query: 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385
+A + + L I N I+ IY ++
Sbjct: 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA---IANIYAENGYLKK 173
Query: 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445
+ L ++ +K LE + LY+ RY E+ A+
Sbjct: 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233
Query: 446 SAFFGIVLNQMGLACLQLYRINEATELFEEA 476
G + Q G +L E +
Sbjct: 234 --LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 35/299 (11%), Positives = 72/299 (24%), Gaps = 51/299 (17%)
Query: 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312
EA + ++ I Y L ++D A + F
Sbjct: 21 EAIEVFNKLEA-------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIET---YF 64
Query: 313 KATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372
S F + + G+ + + A+ + +
Sbjct: 65 SKVNATKAKSAD--FEYYGKILMKKGQDSLAIQQYQAAVDR--DT-------TRLDMYGQ 113
Query: 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432
I + + A++ ++K ++ P ++G Y Y +A SSF
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFY-------ELGQAYYYNKEYVKADSSFV 166
Query: 433 SAVVKLRASGESKSAFF--GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490
L + + A +E+ V +
Sbjct: 167 KV---LELKPNIYIGYLWRARANAAQD----PDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219
Query: 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
+ +A Y A + IL + +P + L L+
Sbjct: 220 LIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 29/264 (10%), Positives = 65/264 (24%), Gaps = 47/264 (17%)
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
+ A Y L +++ A +E V+ K + G G ++
Sbjct: 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD------FEYYGKILMKKGQDSLAI 94
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238
Y++ ++ D + + F A +K +
Sbjct: 95 QQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD----- 141
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIGNI 291
+ Y +Y A +V + +
Sbjct: 142 ---PKVFYELGQAYYYNKEYVKADSSF-------------VKVLELKPNIYIGYLWRARA 185
Query: 292 YMSL---CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
+ + A Y+K + V + + +A Y ++ + +
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
Query: 349 NALRVCAKPAPATAPEEIANGLTE 372
N L + P A + + L
Sbjct: 246 NILAL--DPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 28/285 (9%), Positives = 68/285 (23%), Gaps = 54/285 (18%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ D ++ + A + + ++D A+
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 221 ---NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277
+ + +AD + K A++
Sbjct: 58 KDIETYFSKVNATKAK--------SADFEYYGKILMKKGQDSLAIQQY------------ 97
Query: 278 ENEVAAID-------VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330
D IG+ + + F AI +K + +F L
Sbjct: 98 -QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--------PKVFYEL 148
Query: 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL 390
YY + ++ S L + KP A + + A
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQ----DPDTKQGLAKPYY 202
Query: 391 QKAMKLL-EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
+K +++ Y + + + +A +++++
Sbjct: 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 34/284 (11%), Positives = 72/284 (25%), Gaps = 50/284 (17%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
A + EA+ V + K + Y + + D +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEA-----KKYNSPYI----YNRRAVCYYELAKYDLAQKD 59
Query: 181 YESGLE-IQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239
E+ + + Y + ++ Q A + ++
Sbjct: 60 IETYFSKVNA------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR------ 107
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIGNIY 292
+ + K ++ A++++ + +G Y
Sbjct: 108 --LDMYGQIGSYFYNKGNFPLAIQYM-------------EKQIRPTTTDPKVFYELGQAY 152
Query: 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352
+ +A S+ K L K +L A K +K Y E +
Sbjct: 153 YYNKEYVKADSSFVKVLE-LKPNIYIGYLWRARANAAQDPD----TKQGLAKPYYEKLIE 207
Query: 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
VCA E+ I+ Y + +A + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
+ L Y + +A + +E + + Y+ ++ +
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLE-----LKPNIYIG----YLWRARANAAQDPDTK 194
Query: 177 ---SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
+ YE +E+ + E Y+A + +A+ K IL +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 50/370 (13%), Positives = 97/370 (26%), Gaps = 84/370 (22%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L EA E + +R A + LG T + ++
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQ-----AAPEREEA----WRSLGLTQAENEKDGLAIIA 77
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
+ DP+ LA +H + A + L
Sbjct: 78 LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS----------- 118
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+ YE + A + + ++E + + + E
Sbjct: 119 --------------QPQYEQLGSVNLQADVDIDDLNVQSE--------DFFFAAPNEYRE 156
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360
L + D A + L LY + + A+ + +P A
Sbjct: 157 CRTLLHAALEM----NPND----AQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDA 206
Query: 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVML 418
N L A N +EAL +A+ + PGY + M V
Sbjct: 207 QL----WNKL---GATLANGNRPQEALDAYNRALDI---NPGY------VRVMYNMAVSY 250
Query: 419 YVVGRYGEARSSFESAVVKLR-----ASGESKSAFFGIVLNQMGLACLQLYRINEATELF 473
+ +Y A A + ++ +GE+ + + + + R + +
Sbjct: 251 SNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309
Query: 474 EEARGVLEQE 483
+ +E
Sbjct: 310 AQNVEPFAKE 319
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 49/237 (20%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
G + AI + + H + LA + + +
Sbjct: 62 GLTQAENEKDGLAIIALNHARML-DPKDIAVHAA-------LAVSHTNEHNANAALASLR 113
Query: 349 NALRVCAKPAPATAPEEIANGLTEISA--------IYEALNEHEEALKLLQKAMKLLEDT 400
L +P +I + A NE+ E LL A+++
Sbjct: 114 AWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM---N 168
Query: 401 PGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGL 458
P + +GV+ + Y A ++ AV E + + N++G
Sbjct: 169 PNDA------QLHASLGVLYNLSNNYDSAAANLRRAV-------ELRPDDA-QLWNKLGA 214
Query: 459 ACLQLYRINEATELFEEARGVLEQECGSCHL--DTLGVYSNLAATYDALGRVEDAIE 513
R EA + + A L+ + + V N+A +Y + + + A +
Sbjct: 215 TLANGNRPQEALDAYNRA---LD-------INPGYVRVMYNMAVSYSNMSQYDLAAK 261
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 41/234 (17%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
G + L EA +++ + + L K +
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAA-----PER---EEAWRSLGLTQAENEKDGLAIIAL 78
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407
+A + P +A T + AL L+ + S
Sbjct: 79 NHARML--DPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQLGSVN 129
Query: 408 AGIEAQ--------MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459
+ Y E R+ +A+ E + +G+
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL-------EMNPNDAQ-LHASLGVL 181
Query: 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
+ A A +E D +++ L AT R ++A++
Sbjct: 182 YNLSNNYDSAAANLRRA---VEL-----RPDDAQLWNKLGATLANGNRPQEALD 227
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 23/200 (11%), Positives = 51/200 (25%), Gaps = 31/200 (15%)
Query: 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKL 389
++ L E+ E + P E + + A+
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQA--AP-------EREEAWRSLGLTQAENEKDGLAIIA 77
Query: 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK-------LRASG 442
L A L H+ + V A +S + ++ +
Sbjct: 78 LNHARMLDPKDIAVHAA-------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502
++ + + E L A LE + ++++L Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA---LEMNP-----NDAQLHASLGVLY 182
Query: 503 DALGRVEDAIEILEYILKVR 522
+ + A L +++R
Sbjct: 183 NLSNNYDSAAANLRRAVELR 202
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 31/204 (15%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLD 175
+++ + + + E +L ++E+ + A + LG + D
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEM-----NPNDAQL----HASLGVLYNLSNNYD 189
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235
+ +E+ P A+ L + EA + + L+I+ +
Sbjct: 190 SAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-- 239
Query: 236 SASLEEAADRRLMALVYEAKADYESALEHLVLA------SMVMIANGQENEVAAIDVSIG 289
MA+ Y + Y+ A + LV A ++
Sbjct: 240 ----VRV--MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293
Query: 290 NIYMSLCRFDEAIFSYQKGLTVFK 313
+ + R D +Y + + F
Sbjct: 294 MLLNVMNRPDLVELTYAQNVEPFA 317
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 9e-13
Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 14/232 (6%)
Query: 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSAS--LEEAADR-RLMALVYEAKADYESALE 263
++ AE + S S EEAAD A +Y + + A +
Sbjct: 4 PVELLK-----RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGD 58
Query: 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323
+ A+ G E+E V + S A+ S + + +F T
Sbjct: 59 SFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--THRGQFRRG 116
Query: 324 ASIFIRLADLYY-RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382
A+ L ++ + ++ E A A+ + + + + +
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKCADLKALDGQ 173
Query: 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
+ EA + K +K ++ + G+ A + +
Sbjct: 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 9/199 (4%)
Query: 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL-MALVYEAKADY 258
A+ C A + + + A + K + ++ G + +EA + + +++ +
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG---NEDEAGNTYVEAYKCFKSGGNS 93
Query: 259 ESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRG 317
+A++ L A + GQ A +G I + L + +AI Y+ +
Sbjct: 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-- 151
Query: 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377
+ FI+ ADL G+ E+ ++ + + + +
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQ 209
Query: 378 EALNEHEEALKLLQKAMKL 396
A + A + LQ+
Sbjct: 210 LAATDAVAAARTLQEGQSE 228
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 6e-07
Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 10/213 (4%)
Query: 105 FSGSGQELELVMSLHMLAA-IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163
+ E L + AA IY A ++ + G++ Y++
Sbjct: 26 SGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADY-QKKAGNEDEAGNT--YVE 82
Query: 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQ-FDEAENL 222
S G +V E+ ++I R A L E + + +A +
Sbjct: 83 AYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 223 CKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN-EV 281
+ E + + A + A + Y A + + N +
Sbjct: 141 YELAGEWYAQDQSVALSNKC--FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198
Query: 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314
+ G ++ A + Q+G +
Sbjct: 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 47/209 (22%)
Query: 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
+ +F + A + ++ A +Y +L + A K A +E
Sbjct: 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK---AGNEDEAG 77
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427
N E +++ A+ L+ A+++ G A + ++G +L
Sbjct: 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELGEILE-------- 128
Query: 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487
L+ +A + +E A Q+
Sbjct: 129 ---------------------------------NDLHDYAKAIDCYELAGEWYAQDQSVA 155
Query: 488 HLDTLGVYSNLAATYDALGRVEDAIEILE 516
+ + A G+ +A +I
Sbjct: 156 LSN--KCFIKCADLKALDGQYIEASDIYS 182
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 63/337 (18%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
G AV + E +++ + A + LG T + ++
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQ-----QDPKHMEA----WQYLGTTQAENEQELLAISA 120
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
LE+ P LA + +A + + L + H +
Sbjct: 121 LRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172
Query: 241 E---------AADRRLMALVY-----EAKADYESALEHLVLASMVMIANGQENEVAAIDV 286
E + R L +L+ E K + +A+ L + + Q
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR---LDPTSIDPDVQCG------- 222
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
+G ++ +D+A+ + L+V R D ++ +L + E+ +
Sbjct: 223 -LGVLFNLSGEYDKAVDCFTAALSV----RPND----YLLWNKLGATLANGNQSEEAVAA 273
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406
AL + +P + N + L H EA++ +A+ + + G
Sbjct: 274 YRRALEL--QPGYIRS---RYN----LGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324
Query: 407 IAGIEAQ----MGVMLYVVGRYGEARSSFESAVVKLR 439
+ + + L ++G+ ++ + L
Sbjct: 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 59/343 (17%), Positives = 110/343 (32%), Gaps = 52/343 (15%)
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQF-DEAENLCKKILEIHREH---GHS 236
+S +E ++ + E + AEAH + D K + E+ H
Sbjct: 6 AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296
EE R + A +E+A++ + A +G
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ------------DPKHMEAW-QYLGTTQAENE 112
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+ AI + ++ L + K ++ LA + R++ + LR
Sbjct: 113 QELLAISALRRCLEL-KPDNQTALMA-------LAVSFTNESLQRQACEILRDWLRYTPA 164
Query: 357 PAPATAPEEIANGLTEISAIYEALN------EHEEALKLLQKAMKLLEDTPGYHSTIAGI 410
A P E G + L E +L A++L P +
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---DPTSID--PDV 219
Query: 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEAT 470
+ +GV+ + G Y +A F +A+ +R + ++ N++G + EA
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAAL-SVRPN-------DYLLWNKLGATLANGNQSEEAV 271
Query: 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
+ A LE + NL + LG +A+E
Sbjct: 272 AAYRRA---LE-----LQPGYIRSRYNLGISCINLGAHREAVE 306
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 57/334 (17%), Positives = 105/334 (31%), Gaps = 62/334 (18%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ G G L +V +E+ ++ DP+ E +YL + Q A
Sbjct: 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAI 118
Query: 221 NLCKKILEIHREHG--HSASLEEAADRRLMALVY-------EAKADYESALE----HLVL 267
+ ++ LE+ ++ A +A+ + +A L + L
Sbjct: 119 SALRRCLELKPDNQTALMA----------LAVSFTNESLQRQACEILRDWLRYTPAYAHL 168
Query: 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327
+ G I +S F E + A R + +
Sbjct: 169 VTPAEEGAGGAG--LGPSKRILGSLLSDSLFLEVKELFL------AAVRLDPTSIDPDVQ 220
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
L L+ G+ ++ AL V +P N L A N+ EEA+
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKL---GATLANGNQSEEAV 271
Query: 388 KLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFESAVV---KLRASG 442
++A++L PGY ++ +G+ +G + EA F A+ K R
Sbjct: 272 AAYRRALEL---QPGYI------RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Query: 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
A + + + LA L + +
Sbjct: 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 44/308 (14%)
Query: 214 MQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273
M+F+ A++ + ++ + A LEE A R A + + D +
Sbjct: 1 MEFERAKSAIESDVDFWDKLQ--AELEEMAKRDAEAHPWLSDYD-DLTSATYDKGYQFEE 57
Query: 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333
N + + G + A+ ++ + H + L
Sbjct: 58 ENPLRDHPQPFE--EGLRRLQEGDLPNAVLLFEAAVQQD-----PKH---MEAWQYLGTT 107
Query: 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393
+ + S L KP TA +A T + +A ++L+
Sbjct: 108 QAENEQELLAISALRRCLE--LKPDNQTALMALAVSFTN-------ESLQRQACEILRDW 158
Query: 394 MKL--------LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445
++ G G ++ L + E + F +A +R S
Sbjct: 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA---VRLDPTSI 215
Query: 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505
V +G+ ++A + F A L + +++ L AT
Sbjct: 216 DP---DVQCGLGVLFNLSGEYDKAVDCFTAA---LSVR-----PNDYLLWNKLGATLANG 264
Query: 506 GRVEDAIE 513
+ E+A+
Sbjct: 265 NQSEEAVA 272
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 45/279 (16%)
Query: 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF-DEAIFSYQKGLTV 311
AK+ ES ++ + + E+ + + L + D +Y KG
Sbjct: 5 RAKSAIESDVDF---------WDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ- 54
Query: 312 FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371
F+ E+ L + G L + E A++ P +
Sbjct: 55 FEE---ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DP-------KHMEAWQ 102
Query: 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSF 431
+ + A+ L++ ++L D + V +A
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPDNQTALMA-------LAVSFTNESLQRQACEIL 155
Query: 432 ESAV--------VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483
+ + A + A G +G + L E ELF A + +
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAA---VRLD 211
Query: 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522
S D V L ++ G + A++ L VR
Sbjct: 212 PTSIDPD---VQCGLGVLFNLSGEYDKAVDCFTAALSVR 247
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 42/225 (18%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
GN + +FDEAI Y K + K D + A Y G+ + S
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-----DI----TYLNNRAAAEYEKGEYETAISTLN 62
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
+A+ + I+ + + L L+K ++ + + H T
Sbjct: 63 DAVEQ--GREMRADYKVISK-------SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111
Query: 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468
+L + + E+ + G
Sbjct: 112 ------ADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDWPN 157
Query: 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
A + + E +++ + YSN AA L +AI
Sbjct: 158 AVKAYTEM---IKR-----APEDARGYSNRAAALAKLMSFPEAIA 194
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 45/227 (19%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
++ AI + + G + + + ++ + RIG +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQ-----GREM---RADYKVISKSFARIGNAYHKLGDLK 96
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
+ K + E I L E+ LK + + P A
Sbjct: 97 KTIEYYQK-----SLTEHRTAD-----ILTKLRNAEKELKKAEAEAYV---NPEK----A 139
Query: 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468
G + + A ++ ++ + E + + A +L E
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEM---IKRAPEDARGY-----SNRAAALAKLMSFPE 191
Query: 469 ATELFEEARGVLEQECGSCHLD--TLGVYSNLAATYDALGRVEDAIE 513
A +A +E D + Y A A+ A+E
Sbjct: 192 AIADCNKA---IE-------KDPNFVRAYIRKATAQIAVKEYASALE 228
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 34/276 (12%), Positives = 76/276 (27%), Gaps = 50/276 (18%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
+ +F+EA+ ++ E + K + G + ++
Sbjct: 11 EGNKFYKARQFDEAIEHYNKAWE---LHK-------DITYLNNRAAAEYEKGEYETAIST 60
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
+E + + ++++ + KK +E +++
Sbjct: 61 LNDAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS------- 105
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
R A + + E L+ E A G Y + +
Sbjct: 106 LTEHRT--ADILTKLRNAEKELKKAEAE----AYVNPEKAEEARL--EGKEYFTKSDWPN 157
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360
A+ +Y + + ED A + A ++ E+ + C A+ P
Sbjct: 158 AVKAYTEMIKR----APED----ARGYSNRAAALAKLMSFPEAIADCNKAIEK--DP--- 204
Query: 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ A+ E+ AL+ L A
Sbjct: 205 ----NFVRAYIRKATAQIAVKEYASALETLDAARTK 236
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 35/276 (12%), Positives = 70/276 (25%), Gaps = 52/276 (18%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQ--IEALGDSDPRVAETCRYLAEAHIQAMQFDE 218
G+ D ++ Y E+ I L A A + +++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLN-----------NRAAAEYEKGEYET 56
Query: 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278
A + +E RE AD ++++ + + L L I Q+
Sbjct: 57 AISTLNDAVEQGREM--------RADYKVISKSFARIGNAYHKLGDLKKT----IEYYQK 104
Query: 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG 338
+ +I L ++ + + V A Y+
Sbjct: 105 SLTEH---RTADILTKLRNAEKELKKAEAEAYVNP--------EKAEEARLEGKEYFTKS 153
Query: 339 KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398
+ ++ P A A L EA+ KA++
Sbjct: 154 DWPNAVKAYTEMIKR--APEDARGYSNRAA-------ALAKLMSFPEAIADCNKAIEKDP 204
Query: 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
+ + V Y A + ++A
Sbjct: 205 NFVRAYIR-------KATAQIAVKEYASALETLDAA 233
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 4e-07
Identities = 44/280 (15%), Positives = 86/280 (30%), Gaps = 48/280 (17%)
Query: 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA 256
+A+ + +A QFDEA K E+H++ + R A K
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-------TYLNNR--AAAEYEKG 52
Query: 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316
+YE+A+ L A + G+E I + + + +K + +
Sbjct: 53 EYETAISTLNDA----VEQGREMRADYK--VISKSFARIGNAYHKLGDLKKTIEYY---- 102
Query: 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376
+ L+ R AD+ ++ + E V P A
Sbjct: 103 -QKSLT----EHRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGK-------E 148
Query: 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436
Y ++ A+K + +K + +S L + + EA + A +
Sbjct: 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYS-------NRAAALAKLMSFPEAIADCNKA-I 200
Query: 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
+ + F + A + + A E + A
Sbjct: 201 EKDPN-------FVRAYIRKATAQIAVKEYASALETLDAA 233
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 37/259 (14%), Positives = 74/259 (28%), Gaps = 62/259 (23%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
AA G +E A+ L ++E G + Y + + + +G +
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQ-----GREMRAD----YKVISKSFARIGNAYHKLGD 94
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
+ +E + R A+ + ++ + ++ E
Sbjct: 95 LKKTIEY--------YQKSLTEHR-TADILTKLRNAEKELKKAEAEAYVNPEK------A 139
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIGNIYM 293
E A RL Y K+D+ +A++ E+ +
Sbjct: 140 EEA--RLEGKEYFTKSDWPNAVKAY-------------TEMIKRAPEDARGYSNRAAALA 184
Query: 294 SLCRFDEAIFSYQKGLTV----FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349
L F EAI K + +A +IR A + + + +
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVRA------------YIRKATAQIAVKEYASALETLDA 232
Query: 350 ALRVCAKPAPATAPEEIAN 368
A A+ ++ EI
Sbjct: 233 ARTKDAEVNNGSSAREIDQ 251
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/200 (10%), Positives = 56/200 (28%), Gaps = 50/200 (25%)
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
+++ + +G + L+++IE K + D + + ++ +
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIE----------YYQKSLTEHRTADILTKLRNAEKEL 125
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH--GHS 236
E+ + +P AE R + + + A ++++ E G+S
Sbjct: 126 KKAEAEAYV--------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIG 289
A + A+ N+ D +
Sbjct: 178 N----------RAAALAKLMSFPEAIADC-------------NKAIEKDPNFVRAYIRKA 214
Query: 290 NIYMSLCRFDEAIFSYQKGL 309
+++ + A+ +
Sbjct: 215 TAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 31/148 (20%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLD 175
++ H A I L E+ + E V ++A G +
Sbjct: 106 LTEHRTADILTKLRNAEKELKKAEAEAYV-----NPEKAEE----ARLEGKEYFTKSDWP 156
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235
+V Y ++ P A A A + M F EA C K +E
Sbjct: 157 NAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----- 203
Query: 236 SASLEEAADRRLMALVYEAKADYESALE 263
+ A R+ A A +Y SALE
Sbjct: 204 -PNFVRAYIRK--ATAQIAVKEYASALE 228
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-10
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 32/191 (16%)
Query: 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418
P + P A+ L ++ I EEA++L +KA+++ + HS + +L
Sbjct: 2 PGSCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-------NLASVL 53
Query: 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478
G+ EA ++ A +++ + F + MG ++ + A + + A
Sbjct: 54 QQQGKLQEALMHYKEA-IRISPT-------FADAYSNMGNTLKEMQDVQGALQCYTRAI- 104
Query: 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538
+ +SNLA+ + G + +AI LK+ PD D
Sbjct: 105 -------QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYC 149
Query: 539 RLAELLKETGR 549
LA L+
Sbjct: 150 NLAHCLQIVCD 160
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 37/249 (14%), Positives = 79/249 (31%), Gaps = 33/249 (13%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
SL+ LA I G EEAV + +++EV + A A L G L
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEV-----FPEFAAAHS----NLASVLQQQGKLQE 61
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
++ Y+ + I P A+ + + A + ++I+
Sbjct: 62 ALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF--- 110
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296
A +A +++ + A+ A + + A ++ + +C
Sbjct: 111 -----ADAHSNLASIHKDSGNIPEAIASYRTA-----LKLKPDFPDAY-CNLAHCLQIVC 159
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+ + +K +++ ++ L + LY R++ + L +
Sbjct: 160 DWTDYDERMKKLVSIVADQLEKNRLPSVHPH--HSMLYPLSHGFRKAIAERHGNLCLDKI 217
Query: 357 PAPATAPEE 365
P E
Sbjct: 218 NVLHKPPYE 226
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 4e-06
Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 23/182 (12%)
Query: 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307
+A + + + E A+ A V E AA ++ ++ + EA+ Y++
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
+ + A + + + + ++ + A+++ PA A A
Sbjct: 69 AIRISPTF--------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADA----- 113
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427
+ +++I++ EA+ + A+KL D P + +A + R +
Sbjct: 114 --HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
Query: 428 RS 429
S
Sbjct: 172 VS 173
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 37/232 (15%)
Query: 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254
S P A++ LA + +EA L +K LE+ E + S +A V +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS--------NLASVLQQ 55
Query: 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314
+ + AL H A A ++GN + A+ Y + + +
Sbjct: 56 QGKLQEALMHY------KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NP 108
Query: 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEIS 374
+ H + LA ++ G + E+ + AL++ KP A +A+ L +
Sbjct: 109 AFADAHSN-------LASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159
Query: 375 AIYEALNEHEEALKL-------------LQKAMKLLEDTPGYHSTIAGIEAQ 413
+ ++ + + L + G+ IA
Sbjct: 160 DWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGN 211
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 3e-10
Identities = 39/402 (9%), Positives = 94/402 (23%), Gaps = 71/402 (17%)
Query: 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL 174
V+++ +L + +PVL ++ + + +A ++ +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLT-----PAQVVA----IASHDGGKQALETV 479
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234
+ + + + + + + +
Sbjct: 480 QQLLPVLCQAHGLTPDQ--------VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ- 530
Query: 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294
A ++ + V A L +V IA+ G +
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHG-LTPDQVVAIAS------------NGGGKQA 577
Query: 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354
L + + + +++ + L V
Sbjct: 578 LETVQRLLPVLCQAH---------------GLTQVQVVAIASNIGGKQALETVQRLLPVL 622
Query: 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414
+ A P + + +AL + L +L +A L TP IA
Sbjct: 623 CQ-AHGLTPAQ-VVAIASHDGGKQALETVQRLLPVLCQAHGL---TPDQVVAIAS----N 673
Query: 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474
G + A + + L + +
Sbjct: 674 GGGKQALETVQRLLPVLCQAH-------GLTQEQV-VAIASNNGGKQALETVQRLLPVLC 725
Query: 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILE 516
+A G+ D + ++ AL V+ + +L
Sbjct: 726 QAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVLC 759
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 9e-10
Identities = 44/421 (10%), Positives = 100/421 (23%), Gaps = 76/421 (18%)
Query: 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL 174
V+++ +L + +PVL ++ + + +A ++ +
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGL-----TPAQVVA----IASHDGGKQALETM 242
Query: 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234
R + + P + + + +
Sbjct: 243 QRLLPVLCQAHGL--------PPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ- 293
Query: 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294
+A + L L A + ++V AI S +
Sbjct: 294 -------VVAIASHGGGKQALETVQRLLPVLCQAHGL-----TPDQVVAI-ASHDGGKQA 340
Query: 295 LCRFDEAIFSYQK---------------GLTVFKATRGEDHLSVASIFIRL----ADLYY 335
L + + G + L V L
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 400
Query: 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395
G + ++ + L V + A P++ + +AL + L +L +
Sbjct: 401 SNGGKQALETV-QRLLPVLCQ-AHGLTPDQ-VVAIASHDGGKQALETVQRLLPVLCQTHG 457
Query: 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQ 455
L TP I A + + A + + +
Sbjct: 458 L---TPAQVVAI----ASHDGGKQALETVQQLLPVLCQAH--------GLTPDQVVAIAS 502
Query: 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515
L + + +A G+ D + ++ AL V+ + +L
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVL 554
Query: 516 E 516
Sbjct: 555 C 555
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 39/390 (10%), Positives = 89/390 (22%), Gaps = 71/390 (18%)
Query: 127 SLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186
+L + +PVL ++ + D+ +A ++ + R +
Sbjct: 407 ALETVQRLLPVLCQAHGL-----TPDQVVA----IASHDGGKQALETVQRLLPVLCQTHG 457
Query: 187 IQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRR 246
+ P + + + + + A ++
Sbjct: 458 L--------TPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ-VVAIASNIGGKQ 508
Query: 247 LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306
+A V A ++V AI S G +L +
Sbjct: 509 ALATVQRLLPVLCQAHGL------------TPDQVVAI-ASNGGGKQALETVQRLLPVLC 555
Query: 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366
+ + S + ++ A + A
Sbjct: 556 QAHG-LTPDQVVAIAS-------NGGGKQALETVQRLLPVLCQAHGL--TQVQVVA---- 601
Query: 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE 426
+ +AL + L +L +A TP IA +
Sbjct: 602 ---IASNIGGKQALETVQRLLPVLCQA---HGLTPAQVVAIA----SHDGGKQALETVQR 651
Query: 427 ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486
A + + G L + + +A G+
Sbjct: 652 LLPVLCQAH-------GLTPDQV-VAIASNGGGKQALETVQRLLPVLCQAHGL------- 696
Query: 487 CHLDTLGVYSNLAATYDALGRVEDAIEILE 516
+ + ++ AL V+ + +L
Sbjct: 697 -TQEQVVAIASNNGGKQALETVQRLLPVLC 725
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 45/326 (13%), Positives = 81/326 (24%), Gaps = 62/326 (19%)
Query: 200 AETCRYLAEAHIQAMQ-----FDEAENLCKKILEIHREHGH----SASLEEAADRRLMAL 250
A AHI A+ + I+ E H + + R L AL
Sbjct: 80 ALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEAL 139
Query: 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLT 310
+ +A L+ + + G + A+ A+ LT
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVH-----------ASRNALTGAPLNLT 188
Query: 311 VFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGL 370
V +I + ++ A + PA A +
Sbjct: 189 P---------AQVVAIASNNG-GKQALETVQRLLPVLCQAHGL--TPAQVVA-------I 229
Query: 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430
+AL + L +L +A L P IA +
Sbjct: 230 ASHDGGKQALETMQRLLPVLCQAHGL---PPDQVVAIA----SNIGGKQALETVQRLLPV 282
Query: 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490
A L + + G L + + +A G+ D
Sbjct: 283 LCQAH-GLTPD-------QVVAIASHGGGKQALETVQRLLPVLCQAHGL--------TPD 326
Query: 491 TLGVYSNLAATYDALGRVEDAIEILE 516
+ ++ AL V+ + +L
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLC 352
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 32/245 (13%), Positives = 68/245 (27%), Gaps = 51/245 (20%)
Query: 241 EAADRRL-MALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIGNIY 292
EA D + + L Y + + E A L + ID ++ ++
Sbjct: 35 EARDAYIQLGLGYLQRGNTEQAKVPL-------------RKALEIDPSSADAHAALAVVF 81
Query: 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352
+ A Y+K L + + Y + E+ A +
Sbjct: 82 QTEMEPKLADEEYRKALA-SDSRNARVLNN-------YGGFLYEQKRYEEAYQRLLEASQ 133
Query: 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA 412
P + E + + + + +A + +K+++L + P
Sbjct: 134 DTLYPERSRVFENLGL-------VSLQMKKPAQAKEYFEKSLRLNRNQPSVAL------- 179
Query: 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472
+M +LY Y AR ++ + S L + A
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARS--------LLLGIRLAKVFEDRDTAASY 231
Query: 473 FEEAR 477
+ +
Sbjct: 232 GLQLK 236
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 42/199 (21%)
Query: 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383
+I+L Y + G ++K AL P+ A A +A +++ E
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAV-------VFQTEMEP 87
Query: 384 EEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFESAVVKLRAS 441
+ A + +KA+ G LY RY EA A + +
Sbjct: 88 KLADEEYRKALAS---DSRNA------RVLNNYGGFLYEQKRYEEAYQRLLEA---SQDT 135
Query: 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL----DTLGVYSN 497
+ + V +GL LQ+ + +A E FE++ L + V
Sbjct: 136 LYPERS---RVFENLGLVSLQMKKPAQAKEYFEKS------------LRLNRNQPSVALE 180
Query: 498 LAATYDALGRVEDAIEILE 516
+A A + +
Sbjct: 181 MADLLYKEREYVPARQYYD 199
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 41/238 (17%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
Y+QLG G +++ LEI DP A+ LA M+ A+
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLAD 91
Query: 221 NLCKKILEIHREHG--HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278
+K L + + + YE A + L+ A +
Sbjct: 92 EEYRKALASDSRNARVLNN----------YGGFLYEQKRYEEAYQRLLEA----SQDTLY 137
Query: 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG 338
E + + ++G + + + + +A ++K L + L +ADL Y+
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LNRNQPSVALE-------MADLLYKER 189
Query: 339 KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ ++ Y + + A + G+ + + + + A + +L
Sbjct: 190 EYVPARQYYDLFAQG----GGQNA-RSLLLGIR----LAKVFEDRDTAASYGLQLKRL 238
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 24/154 (15%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
R+EEA L + + +R+ + LG M ++
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV----FENLGLVSLQMKKPAQAKEY 163
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS---- 236
+E L + + +A+ + ++ A + ++ S
Sbjct: 164 FEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215
Query: 237 ASLEEAADRRLMALVYEAKA-----DYESALEHL 265
L + + R A Y + E
Sbjct: 216 IRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 4e-10
Identities = 21/186 (11%), Positives = 56/186 (30%), Gaps = 26/186 (13%)
Query: 253 EAKADYESALE---HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309
+A + + + + + + + Y +D+A Y++ L
Sbjct: 22 QAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81
Query: 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369
+ + A++ G+ +++ E L++ + A + N
Sbjct: 82 --------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGN- 130
Query: 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429
Y + ++ L+ K + + G+ RY +AR+
Sbjct: 131 -----YYYLTAEQEKKKLETDYKKLSSPTKMQYAR-------YRDGLSKLFTTRYEKARN 178
Query: 430 SFESAV 435
S + +
Sbjct: 179 SLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 30/223 (13%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSI-------EVVDIGKGSDRALAKFSGYMQLGDTCSS 170
+ + G+ +AV ++I E+ + +L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 171 MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230
D++ Y+ L+ P + AE + Q +A + +KIL++
Sbjct: 67 NRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 231 REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290
++ AA+ L Y + LE +++ + + A G
Sbjct: 119 ADN-------LAANIFLGNYYYLTAEQEKKKLETDYKK----LSSPTKMQYARY--RDGL 165
Query: 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333
+ R+++A S QK + F +T E ++ I ++
Sbjct: 166 SKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILRIEKEV 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 8e-09
Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 39/232 (16%)
Query: 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPA-------TAPEEIANGLTEISAIYEA 379
++ G+ ++ SY + + E + TE++ Y+
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439
+++A ++ ++ + M G+ +A +E +
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLE-------ACAEMQVCRGQEKDALRMYEKIL---- 115
Query: 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499
+ ++ + L + + E + S
Sbjct: 116 ---QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL--------SSPTKMQYARYRDG 164
Query: 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK--ERLAELLKETGR 549
+ R E A L+ ++ P + +K +++ + KE R
Sbjct: 165 LSKLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDKILRIEKEVNR 208
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 47/379 (12%), Positives = 113/379 (29%), Gaps = 64/379 (16%)
Query: 213 AMQFDEAENLCKKILEI-------HREHGHSASLEEAADRRLMALVYEAKADYESALEHL 265
AM+F+ A+ + E E + E + + V ++ Y E+
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 266 VLAS-------MVMIANGQENE-VAAIDVSI-------------GNIYMSLCRFDEAIFS 304
+ + G + ++ +I G AI +
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121
Query: 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364
Q+ L + + + ++ LA Y +++ +N ++ P +
Sbjct: 122 LQRCLEL-QPNNLKALMA-------LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVK 171
Query: 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY 424
+ ++ + + + ++ ++ +GV+ ++ G +
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--PDLQTGLGVLFHLSGEF 229
Query: 425 GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484
A +F +A+ + + + N++G R EA E + A LE
Sbjct: 230 NRAIDAFNAAL-------TVRPEDY-SLWNRLGATLANGDRSEEAVEAYTRA---LE--- 275
Query: 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544
+ NL + LG +A+ L + ++++ +
Sbjct: 276 --IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--------QRKSRNQQQVPHPAI 325
Query: 545 KETGRARNRKGKSLENLLD 563
A R SL + +
Sbjct: 326 SGNIWAALRIALSLMDQPE 344
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 44/285 (15%), Positives = 85/285 (29%), Gaps = 54/285 (18%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
G + +E +I + A A + LG T + ++
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAIL-----QDPGDAEA----WQFLGITQAENENEQAAIVA 121
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI-------HREH 233
+ LE+ P + LA ++ +A K ++ +
Sbjct: 122 LQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK 173
Query: 234 GHSASLEEAADRRLMA--LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNI 291
S L + + ++ K Y A ++ + Q +G +
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH---QNGDMIDPDLQTG--------LGVL 222
Query: 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL 351
+ F+ AI ++ LTV R ED S++ RL + E+ AL
Sbjct: 223 FHLSGEFNRAIDAFNAALTV----RPED----YSLWNRLGATLANGDRSEEAVEAYTRAL 274
Query: 352 RVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ +P + N + L + EA+ A+ L
Sbjct: 275 EI--QPGFIRS---RYN----LGISCINLGAYREAVSNFLTALSL 310
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 53/345 (15%), Positives = 106/345 (30%), Gaps = 75/345 (21%)
Query: 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFD 217
+ G + G G L ++ E+ + DP AE ++L +
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQ 116
Query: 218 EAENLCKKILEIHREHG--HSASLEEAADRRLMALVY-------EAKADYESALEHLVLA 268
A ++ LE+ + A +A+ Y +A ++ ++
Sbjct: 117 AAIVALQRCLELQPNNLKALMA----------LAVSYTNTSHQQDACEALKNWIKQ---- 162
Query: 269 SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV----FKATRGEDHLSVA 324
+ + R ++ V +A +
Sbjct: 163 --------NPKYKYLVK-NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213
Query: 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
+ L L++ G+ + AL V +P + N L A + E
Sbjct: 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSL----WNRL---GATLANGDRSE 264
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFESAV------- 435
EA++ +A+++ PG+ I ++ +G+ +G Y EA S+F +A+
Sbjct: 265 EAVEAYTRALEI---QPGF------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315
Query: 436 ----VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
V A + A I L+ M L ++ A
Sbjct: 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 6e-10
Identities = 38/264 (14%), Positives = 81/264 (30%), Gaps = 55/264 (20%)
Query: 253 EAKADYESALEHLVLASMVMIANGQENEVAAID-VSIGNIYMSLCRFDEAIFSYQKGLTV 311
+ + + + + +A++ +++A ++ K +
Sbjct: 3 SSHHHHHHSSG----------LVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52
Query: 312 FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371
K + A +I A+L + +L + ++ + AL + + ATA N
Sbjct: 53 NK-----ED---AIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN--- 99
Query: 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARS 429
+Y ++EA + +KA++ + +G +L + + A
Sbjct: 100 ----VYVVKEMYKEAKDMFEKALRA---GMENG------DLFYMLGTVLVKLEQPKLALP 146
Query: 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489
+ AV E Q G+ ++EA F E
Sbjct: 147 YLQRAV-------ELNENDT-EARFQFGMCLANEGMLDEALSQFAAV---TE-----QDP 190
Query: 490 DTLGVYSNLAATYDALGRVEDAIE 513
+ N TY E A+E
Sbjct: 191 GHADAFYNAGVTYAYKENREKALE 214
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 49/262 (18%)
Query: 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274
+ L + + G + +A + A+E
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDY----EKAAEAFTKAIE----------- 51
Query: 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
+ E A ++ N+ S+ + A+ Y K L + A+ + ++Y
Sbjct: 52 --ENKEDAIPYINFANLLSSVNELERALAFYDKALEL-----DSSA---ATAYYGAGNVY 101
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
+E+K E ALR + + L + + AL LQ+A+
Sbjct: 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGT-------VLVKLEQPKLALPYLQRAV 152
Query: 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLN 454
+L E+ Q G+ L G EA S F + E
Sbjct: 153 ELNENDTEARF-------QFGMCLANEGMLDEALSQFAAVT-------EQDPGHA-DAFY 197
Query: 455 QMGLACLQLYRINEATELFEEA 476
G+ +A E+ ++A
Sbjct: 198 NAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 42/306 (13%), Positives = 84/306 (27%), Gaps = 93/306 (30%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
G +E+A ++IE + A+ Y+ + SS+ L+R++
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEE-----NKEDAIP----YINFANLLSSVNELERALAF 79
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
Y+ LE+ D A ++ + EA+++ +K L
Sbjct: 80 YDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----------- 120
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+ L G + + L +
Sbjct: 121 --------------GMENGDLFYML-----------------------GTVLVKLEQPKL 143
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360
A+ Q+ + + E+ + G L E+ S P A
Sbjct: 144 ALPYLQRAVELN-----END---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHA 193
Query: 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVML 418
A Y E+AL++L KA+ + P + A ++
Sbjct: 194 DAFYNAGV-------TYAYKENREKALEMLDKAIDI---QPDHM------LALHAKKLLG 237
Query: 419 YVVGRY 424
+ +
Sbjct: 238 HHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 36/275 (13%), Positives = 78/275 (28%), Gaps = 68/275 (24%)
Query: 174 LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM----QFDEAENLCKKILEI 229
+ S + + PR + + +++A K +E
Sbjct: 1 MGSSHHHHH-------HSS-GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52
Query: 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID---- 285
++E A A + + + E AL ++ +D
Sbjct: 53 NKED--------AIPYINFANLLSSVNELERALAFY-------------DKALELDSSAA 91
Query: 286 ---VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342
GN+Y+ + EA ++K L G ++ +F L + ++ + +
Sbjct: 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMEN---GDLFYMLGTVLVKLEQPKL 143
Query: 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402
+ Y + A+ + A + +EAL + PG
Sbjct: 144 ALPYLQRAVEL--NENDTEARFQFGM-------CLANEGMLDEALSQFAAVTEQ---DPG 191
Query: 403 YHSTIAGIEA--QMGVMLYVVGRYGEARSSFESAV 435
+ +A GV +A + A+
Sbjct: 192 HA------DAFYNAGVTYAYKENREKALEMLDKAI 220
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 33/305 (10%)
Query: 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274
+ ++ +++L + + L+ A EA+ A++
Sbjct: 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------- 132
Query: 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
E E+ +G +Y A + LT K +LS+ ++
Sbjct: 133 ---EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD 189
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE-ISAIYEALNEHEEALKLLQKA 393
+ +S + A+++ + + N + ++AL +A
Sbjct: 190 EHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247
Query: 394 MKLLEDTPGYHSTIAGIEA--QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451
K+ + + YGEA F A L + +
Sbjct: 248 EKVDRKASSNP------DLHLNRATLHKYEESYGEALEGFSQA-AALDPA-------WPE 293
Query: 452 VLNQMGLACLQLYRINEATELFEEARGV-LEQECGSCHLDTLGVYSNLAATYDALGRVED 510
+ L R+ E + + L+ GS LG + + ++
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTL 353
Query: 511 AIEIL 515
++ L
Sbjct: 354 ELKPL 358
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 43/284 (15%)
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK-LRESKSYCENALRVCA 355
++ + ++ V A GK L + Y A + +
Sbjct: 83 EMEKTLQQMEE---------------VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLS 127
Query: 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415
K A PE + ++ +Y + A A+ ++ +
Sbjct: 128 K-AVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ--------NLS 177
Query: 416 VMLYVVGRY--GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEAT-EL 472
++L + E +V + + + + G +G A L LY ++
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSLYFNTGQNPKI 236
Query: 473 FEEARGVLEQ--ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530
++A Q + ++ N A + +A+E + +
Sbjct: 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------D 288
Query: 531 PDIDDEKERLAELLKETGR---ARNRKGKSLENLLDSNAYRVKK 571
P + ++R +LL+ R KGK+ L S ++
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRP 332
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 33/274 (12%), Positives = 69/274 (25%), Gaps = 46/274 (16%)
Query: 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMG-LLDRSVWCYESGLEI 187
E+ + +E + A A M G + + +++
Sbjct: 82 EEMEKTLQQMEEVLGSA-----QVEAQA----LMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 188 QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247
+P + E L E + + A L + +L +
Sbjct: 133 --------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQ 184
Query: 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS--------LCRFD 299
E ++ LA + + + +GN Y+S
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLA----VQMDVLDGRSWY--ILGNAYLSLYFNTGQNPKISQ 238
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
+A+ +Y + S + + A L+ E+ A + PA
Sbjct: 239 QALSAYAQAE-----KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAW 291
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393
+ + E L+ L+ K
Sbjct: 292 PEPQQREQQ-------LLEFLSRLTSLLESKGKT 318
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 42/232 (18%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
+G +L R+D A+ +++ L LA ++G + +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKEN-----PQD---PEALYWLARTQLKLGLVNPALENG 62
Query: 348 ENALRVCAKPAPATAPEEIANGLTEI----SAIYEALNEHEEALKLLQKAMKLLEDTPGY 403
+ + P ++ + E+AL +L+ A ++ P Y
Sbjct: 63 KTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRY 117
Query: 404 HSTIAGIEA--QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL 461
Q G++ ++G +A +S + A + L + E + + + L
Sbjct: 118 A------PLHLQRGLVYALLGERDKAEASLKQA-LALEDTPE--------IRSALAELYL 162
Query: 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
+ R++EA + +A LEQ L + A+ G+ E+A
Sbjct: 163 SMGRLDEALAQYAKA---LEQAP-----KDLDLRVRYASALLLKGKAEEAAR 206
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 38/226 (16%)
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
+RL Y +G+ + + E AL+ P A +A L AL
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLAR-------TQLKLGLVNPAL 59
Query: 388 KLLQKAMKLLEDTPGYHS----TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443
+ + + G + + Q G +A S + A
Sbjct: 60 ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE-------R 112
Query: 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503
+ + Q GL L ++A ++A L E DT + S LA Y
Sbjct: 113 VNPRYAP-LHLQRGLVYALLGERDKAEASLKQA---LALE------DTPEIRSALAELYL 162
Query: 504 ALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
++GR+++A+ L+ P D + R A L G+
Sbjct: 163 SMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK 200
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-06
Identities = 40/249 (16%), Positives = 74/249 (29%), Gaps = 57/249 (22%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
++LG ++G D ++ +E L+ +P+ E +LA ++ + A
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPAL 59
Query: 221 NLCKKILEI--------------HREHGHSASLEEAADRRLMALVYEAKADYESALEHLV 266
K ++ + A E L +A + + A
Sbjct: 60 ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL----EQALSVLKDAERV-- 113
Query: 267 LASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326
+ G +Y L D+A S + +A ED I
Sbjct: 114 ----------NPRYAPLH-LQRGLVYALLGERDKAEASLK------QALALEDT---PEI 153
Query: 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386
LA+LY +G+L E+ + AL P ++ + EEA
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDL----RVRY---ASALLLKGKAEEA 204
Query: 387 LKLLQKAMK 395
+
Sbjct: 205 ARAAALEHH 213
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 30/193 (15%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL----ADLYYRIGKLRES 343
+ + L + A+ + + + ++ ++ ++ L D G L ++
Sbjct: 45 LARTQLKLGLVNPALENGKTLVAR-TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103
Query: 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403
S ++A RV P A + +Y L E ++A L++A+ L EDTP
Sbjct: 104 LSVLKDAERV--NPRYAPLHLQRGL-------VYALLGERDKAEASLKQALAL-EDTPEI 153
Query: 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463
S + + +GR EA + + A+ E + + A L
Sbjct: 154 RS-------ALAELYLSMGRLDEALAQYAKAL-------EQAPKDLD-LRVRYASALLLK 198
Query: 464 YRINEATELFEEA 476
+ EA
Sbjct: 199 GKAEEAARAAALE 211
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 17/121 (14%)
Query: 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMG 172
+ ++ MLA +G ++R + + A +LG +
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHPEA----VARLGRVRWTQQ 71
Query: 173 LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232
+ + + P +L A A Q + A + ++ E
Sbjct: 72 RHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 233 H 233
Sbjct: 124 E 124
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 31/171 (18%)
Query: 382 EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441
+ L L+ A++ + +G + + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWL-------MLADAELGMGDTTAGEMAVQRG---LALH 53
Query: 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501
A + ++G R EA L ++A + G+ L
Sbjct: 54 PGHPEA-----VARLGRVRWTQQRHAEAAVLLQQAS--------DAAPEHPGIALWLGHA 100
Query: 502 YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552
+ G+ E A + P+ +L + R
Sbjct: 101 LEDAGQAEAAAAAYTRAHQ--------LLPEEPYITAQLLNWRRRLCDWRA 143
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 32/204 (15%)
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+ + + ++ LAD +G + + L +
Sbjct: 4 DGPRELLQLRAAVRHRPQD--------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--H 53
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416
P A + + + H EA LLQ+A + PG +G
Sbjct: 54 PGHPEA-------VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA-------LWLGH 99
Query: 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
L G+ A +++ A +L + Q+ +L L +
Sbjct: 100 ALEDAGQAEAAAAAYTRA-HQLLPE-------EPYITAQLLNWRRRLCDWRALDVLSAQV 151
Query: 477 RGVLEQECGSCHLDTLGVYSNLAA 500
R + Q G+ AA
Sbjct: 152 RAAVAQGVGAVEPFAFLSEDASAA 175
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 25/140 (17%)
Query: 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188
+ L ++ +A ++ L D MG + GL +
Sbjct: 3 ADGPRELLQLRAAVRHR-----PQDFVA----WLMLADAELGMGDTTAGEMAVQRGLAL- 52
Query: 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248
P E L + EA L ++ + EH +
Sbjct: 53 -------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH--------PGIALWL 97
Query: 249 ALVYEAKADYESALEHLVLA 268
E E+A A
Sbjct: 98 GHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 22/210 (10%), Positives = 50/210 (23%), Gaps = 37/210 (17%)
Query: 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397
A+R +P A ++ + + +Q+ + L
Sbjct: 3 ADGPRELLQLRAAVRH--RPQDFVA-------WLMLADAELGMGDTTAGEMAVQRGLALH 53
Query: 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457
P + + + R+ EA + A + +G
Sbjct: 54 PGHPEAVARLGRVRWTQ-------QRHAEAAVLLQQA-SDAAPE-------HPGIALWLG 98
Query: 458 LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517
A + A + A + ++ + L L +
Sbjct: 99 HALEDAGQAEAAAAAYTRA---HQLLPEEPYI-----TAQLLNWRRRLCDWRALDVLSAQ 150
Query: 518 ILKVREEKLGTANP-----DIDDEKERLAE 542
+ + +G P + E+LA
Sbjct: 151 VRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231
R + + + P+ LA+A + E ++ L +H
Sbjct: 3 ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP 54
Query: 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNI 291
H + V + + A L A E+ I + +G+
Sbjct: 55 GH--------PEAVARLGRVRWTQQRHAEAAVLLQQA----SDAAPEH--PGIALWLGHA 100
Query: 292 YMSLCRFDEAIFSYQKGL 309
+ + A +Y +
Sbjct: 101 LEDAGQAEAAAAAYTRAH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 17/127 (13%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
+ + + + Q+GL A RL + + + E+ +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGL----ALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQ 81
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
A P + + E + E A +A +LL + P + +
Sbjct: 82 QASDA--APEHPGIALWLGH-------ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
Query: 409 GIEAQMG 415
++
Sbjct: 133 NWRRRLC 139
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 69/242 (28%)
Query: 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYE 253
+ +V+ LA +++ + +A + L+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------------ 37
Query: 254 AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313
E A IY L D+A S+++ L+ K
Sbjct: 38 -DPKNELAWLVR-----------------------AEIYQYLKVNDKAQESFRQALS-IK 72
Query: 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373
E + + L R+ + ES +Y + AL P P A
Sbjct: 73 PDSAEINNNYGWF------LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI----- 121
Query: 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433
+ A L++++ P + ++ + G+ G+A F+
Sbjct: 122 --CSAKQGQFGLAEAYLKRSLAA---QPQFPPAF----KELARTKMLAGQLGDADYYFKK 172
Query: 434 AV 435
Sbjct: 173 YQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 34/193 (17%)
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVM 417
A +++N T+++ Y ++ +A ++ A L+ P A +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDA---LKSDPKNE------LAWLVRAEI 51
Query: 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA-CLQLYRINEATELFEEA 476
+ +A+ SF A + ++ + N G C +L R E+ F++A
Sbjct: 52 YQYLKVNDKAQESFRQA-LSIKPD-------SAEINNNYGWFLCGRLNRPAESMAYFDKA 103
Query: 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536
N G+ A L+ L A P
Sbjct: 104 LADPTYP------TPYIANLNKGICSAKQGQFGLAEAYLKRSLA--------AQPQFPPA 149
Query: 537 KERLAELLKETGR 549
+ LA G+
Sbjct: 150 FKELARTKMLAGQ 162
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 43/248 (17%)
Query: 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336
+ N+V+ I + YM + +A S + L L A++Y
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALK-SDPKNELAWLV-------RAEIYQY 54
Query: 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ +++ AL + KP A EI N + LN E++ KA+
Sbjct: 55 LKVNDKAQESFRQALSI--KPDSA----EINNNYG--WFLCGRLNRPAESMAYFDKALAD 106
Query: 397 LEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLN 454
P + A G+ G++G A + + + + + F
Sbjct: 107 P-TYPTPY------IANLNKGICSAKQGQFGLAEAYLKRS-LAAQPQ-------FPPAFK 151
Query: 455 QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514
++ + ++ +A F++ + +E +L + + +A
Sbjct: 152 ELARTKMLAGQLGDADYYFKKYQSRVEVL----------QADDLLLGWKIAKALGNAQAA 201
Query: 515 LEYILKVR 522
EY +++
Sbjct: 202 YEYEAQLQ 209
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 34/282 (12%), Positives = 68/282 (24%), Gaps = 83/282 (29%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
LA Y + +A +E +++ LA ++ + + + D++
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKS-----DPKNELA----WLVRAEIYQYLKVNDKAQES 64
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM-QFDEAENLCKKILEIHREHGHSASL 239
+ L I P AE + + E+ K
Sbjct: 65 FRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDK-------------- 102
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299
AL A + G +F
Sbjct: 103 ---------ALADPTYPTPYIANLNK-----------------------GICSAKQGQFG 130
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
A ++ L + LA G+L ++ Y +
Sbjct: 131 LAEAYLKRSLA-AQPQFPPAFKE-------LARTKMLAGQLGDADYYFKKYQSR----VE 178
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401
+++ G I +AL + A + +L + P
Sbjct: 179 VLQADDLLLGW----KIAKALGNAQAAYE---YEAQLQANFP 213
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 5e-08
Identities = 82/551 (14%), Positives = 165/551 (29%), Gaps = 148/551 (26%)
Query: 130 RFEEAVPVLE----RSIEVVDIGKGSDRALAK--FSGYMQLGDTCSSMGLLDRSVWCYES 183
++++ + V E + + D+ L+K + D S R W S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWTLLS 73
Query: 184 -GLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242
E+ + + + ++L I+ Q + I + R + + +
Sbjct: 74 KQEEMVQKFVEEVL---RINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 243 ADRRLMALVYEAKADYESALEHL-----------------VLASMVMIANGQENEVAAID 285
RL + AL L +A V ++ + ++
Sbjct: 130 NVSRL-----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--- 181
Query: 286 VSIGNIY---MSLCRFDEAIFSYQKGLTV---FKATRGEDHLSVASIFIRLADLYYRIGK 339
I+ + C E + + L T DH S +I +R+ + + +
Sbjct: 182 ---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRR 236
Query: 340 LRESKSYCENALRV----------------CAKPAPATAPEEIANGLTEISAIYEALNEH 383
L +SK Y EN L V C K T +++ + L+ + + +L+ H
Sbjct: 237 LLKSKPY-ENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 384 ------EEALKLLQKAMKL-LEDTP-----GYHSTIAGIEAQMGVMLYVVGRY------- 424
+E LL K + +D P ++ I + L +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 425 --------------GEARSSFES-AV----VKLRAS------GESKSAFFGIVLNQMGLA 459
E R F+ +V + + + +V+N++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 460 CL-------QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512
L I ++ E + LE E + H + Y N+ T+D+ + +
Sbjct: 415 SLVEKQPKESTISIPS---IYLELKVKLENE-YALHRSIVDHY-NIPKTFDSDDLIPPYL 469
Query: 513 E--ILEYI---LKVREEKLGTANPDIDDEKERLAEL----------LKETGRARNRKGKS 557
+ +I LK N + + + ++ A N G
Sbjct: 470 DQYFYSHIGHHLK---------NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 558 LENLLDSNAYR 568
L L Y+
Sbjct: 521 LNTLQQLKFYK 531
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 128 LGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187
LG +AVP E++I +G D A Y+ LG T ++G ++ +G++
Sbjct: 3 LGLEAQAVPYYEKAIASGL--QGKDLAEC----YLGLGSTFRTLGEYRKAEAVLANGVKQ 56
Query: 188 QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242
P + A ++++ L KI+ + S ++A
Sbjct: 57 --------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+A+ Y+K + G +A ++ L + +G+ R++++ N ++
Sbjct: 5 LEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QF 57
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405
P + + L +E+ ++LL K + D S
Sbjct: 58 P-------NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439
L +A+ +KA+ G +G +G Y +A + + V +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLG----LGSTFRTLGEYRKAEAVLANGVKQFP 58
Query: 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476
+ + L R + EL +
Sbjct: 59 NHQA--------LRVFYAMVLYNLGRYEQGVELLLKI 87
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479
V+G +A +E A+ ASG +G L +A +
Sbjct: 2 VLGLEAQAVPYYEKAI----ASGLQGKDLAE-CYLGLGSTFRTLGEYRKAEAVLANG--- 53
Query: 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519
++Q + + A LGR E +E+L I+
Sbjct: 54 VKQ-----FPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397
G ++ Y E A+ +++A + + + L E+ +A +L +K
Sbjct: 4 GLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57
Query: 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437
+ ++LY +GRY + + +
Sbjct: 58 PNHQALR-------VFYAMVLYNLGRYEQGVELLLKIIAE 90
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 171 MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230
+GL ++V YE + G +AE L ++ +AE + ++
Sbjct: 3 LGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57
Query: 231 REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290
H A R A+V YE +E L+ IA ++E
Sbjct: 58 PNH--------QALRVFYAMVLYNLGRYEQGVELLLKI----IAETSDDE---------- 95
Query: 291 IYMSLCRFDEAIFSYQKGLT-VFKA 314
++ + +AI Y L +KA
Sbjct: 96 ---TIQSYKQAILFYADKLDETWKA 117
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522
L +A +E+A G D Y L +T+ LG A +L +K
Sbjct: 3 LGLEAQAVPYYEKA-----IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-- 55
Query: 523 EEKLGTANPDIDDEKERLAELLKETGR 549
P+ + A +L GR
Sbjct: 56 ------QFPNHQALRVFYAMVLYNLGR 76
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-07
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
GN FD A+ Y K E + + A +Y+ G + + CE
Sbjct: 11 GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
A+ V +IA I Y ++++A+ K++
Sbjct: 63 KAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 36/191 (18%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
G + R+ +A+ ++ + + L Y + G +
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADA-----FD---VDVALHLGIAYVKTGAVDRGTELL 65
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407
E +L P + Y + +++ A+ LL K + P
Sbjct: 66 ERSLAD--APDNVKVATVLGL-------TYVQVQKYDLAVPLLIKVAEA---NPINF--- 110
Query: 408 AGIEAQ--MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465
+ +GV L +GR+ EA SF+ A + LR + G V + + Q+ R
Sbjct: 111 ---NVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPN-------EGKVHRAIAFSYEQMGR 159
Query: 466 INEATELFEEA 476
EA F++A
Sbjct: 160 HEEALPHFKKA 170
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 49/198 (24%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
+ GR+ +AV +LE+ + + + LG G +DR
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDA-----DAFDVDV----ALHLGIAYVKTGAVDRGTEL 64
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH--GHSAS 238
E L P + L ++Q ++D A L K+ E + +
Sbjct: 65 LERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR- 115
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID-------VSIGNI 291
+ + + ++ A++ + +I
Sbjct: 116 ---------LGVALDNLGRFDEAIDSF-------------KIALGLRPNEGKVHRAIAFS 153
Query: 292 YMSLCRFDEAIFSYQKGL 309
Y + R +EA+ ++K
Sbjct: 154 YEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 8e-05
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 24/148 (16%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
+G Y+ D ++ L D+ + L Y ++ K +
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLA-DAP----DN---VKVATVLGLTYVQVQKYDLAVPLL 99
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407
P + + L +EA+ + A+ L + H
Sbjct: 100 IKVAEA--NPINFNVRFRLGV-------ALDNLGRFDEAIDSFKIALGLRPNEGKVHR-- 148
Query: 408 AGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ +GR+ EA F+ A
Sbjct: 149 -----AIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 39/250 (15%), Positives = 70/250 (28%), Gaps = 76/250 (30%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
Y G + + G ++V E + D + +L A+++ D
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGT 62
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280
L ++ L D L
Sbjct: 63 ELLERSLAD-------------------------APDNVKVATVL--------------- 82
Query: 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340
G Y+ + ++D A+ K + ++ RL +G+
Sbjct: 83 --------GLTYVQVQKYDLAVPLLIKVAE-ANP----IN---FNVRFRLGVALDNLGRF 126
Query: 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400
E+ + AL + +P IA YE + HEEAL +KA +L
Sbjct: 127 DEAIDSFKIALGL--RPNEGKVHRAIAF-------SYEQMGRHEEALPHFKKANEL---D 174
Query: 401 PGYHSTIAGI 410
G +A +
Sbjct: 175 EGASVELALV 184
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 22/159 (13%)
Query: 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327
++ M+ E+ + + ++G ++D+A +Q + DH A F
Sbjct: 5 GTLAMLRGLSEDTLEQL-YALGFNQYQAGKWDDAQKIFQALCML-------DHYD-ARYF 55
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
+ L +G ++ + P A + L + + A
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAE-------CHLQLGDLDGAE 106
Query: 388 KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE 426
A L P + + + A+ G ML V +
Sbjct: 107 SGFYSARALAAAQPAHEA----LAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 21/141 (14%)
Query: 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472
+G Y G++ +A+ F++ F G +G L +A +
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALC---MLDHYDARYFLG-----LGACRQSLGLYEQALQS 74
Query: 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532
+ ++ + A + LG ++ A L A P
Sbjct: 75 YSYGA--------LMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR-----ALAAAQPA 121
Query: 533 IDDEKERLAELLKETGRARNR 553
+ R +L+ ++R
Sbjct: 122 HEALAARAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
L+ L G++++A + + + D A++ ++ LG S+GL ++
Sbjct: 20 QLYALGFNQYQAGKWDDAQKIFQALCML-------DHYDARY--FLGLGACRQSLGLYEQ 70
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
++ Y G + D + AE H+Q D AE+ +
Sbjct: 71 ALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122
Query: 237 ASLEEAADRRLMAL 250
+L A L A+
Sbjct: 123 EALAARAGAMLEAV 136
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 46/323 (14%), Positives = 98/323 (30%), Gaps = 67/323 (20%)
Query: 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSV 178
+LA + E + +E+ + + +RA + G S+GL +
Sbjct: 9 EVLAVPLQPTLQQEVILARMEQILASRALTD-DERAQL----LYERGVLYDSLGLRALAR 63
Query: 179 WCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238
+ L I P + E YL QA FD A +LE+ +
Sbjct: 64 NDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----- 110
Query: 239 LEEAADRRLMALVY-----EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM 293
A R +AL Y A+ D + + + + +
Sbjct: 111 -NYAHLNRGIALYYGGRDKLAQDDLLAFYQ-------------DDPNDPFRSLWLYLAEQ 156
Query: 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353
L +A ++ K+ + + ++ + L ++ + K+ +
Sbjct: 157 KLDE-KQAKEVLKQHFE--KSDKEQWGWNIVEFY--LGNIS-EQTLMERLKADATDNT-- 208
Query: 354 CAKPAPATAPEEIANGLTE----ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409
+A L+E + Y +L + + A L + A+ H
Sbjct: 209 -----------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR---- 253
Query: 410 IEAQMGVMLYVVGRYGEARSSFE 432
+ L ++G+ + + +
Sbjct: 254 ---YALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 31/141 (21%)
Query: 379 ALNEHEEAL----KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434
+ E L ++L ++ + GV+ +G AR+ F A
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLLY-------ERGVLYDSLGLRALARNDFSQA 69
Query: 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL--DTL 492
+ + V N +G+ Q + A E F+ LE L
Sbjct: 70 L-------AIRPDMPE-VFNYLGIYLTQAGNFDAAYEAFDSV---LE-------LDPTYN 111
Query: 493 GVYSNLAATYDALGRVEDAIE 513
+ N GR + A +
Sbjct: 112 YAHLNRGIALYYGGRDKLAQD 132
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 32/276 (11%), Positives = 68/276 (24%), Gaps = 40/276 (14%)
Query: 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297
S ++A+ + E L + + ++E A + G +Y SL
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQI--LASRALTDDERAQLLYERGVLYDSLGL 58
Query: 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357
A + + L + D +F L + G + ++ L + P
Sbjct: 59 RALARNDFSQALA-IRP----DM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DP 108
Query: 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM 417
A + A L + + P + E ++
Sbjct: 109 TYNYAHLNRGI-------ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-- 159
Query: 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477
+A+ + K L + + + +
Sbjct: 160 ------EKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNIS----EQTLMERLKADATDNT 208
Query: 478 GVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513
+ E L Y +LG ++ A
Sbjct: 209 SLAEHLS--------ETNFYLGKYYLSLGDLDSATA 236
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
GN F++A Y K + E S + + A +Y+ K E +CE
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAI--------ELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
A+ V + IA ++ ++ N+ A++ +++
Sbjct: 67 KAVEV--GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 2/122 (1%)
Query: 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353
S + E + ++ L + + +L V + +++ + E+ Y +
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380
Query: 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEA 412
K + + + E ++ KA +L T G H +EA
Sbjct: 381 YMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439
Query: 413 QM 414
Sbjct: 440 MR 441
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 5e-05
Identities = 16/148 (10%), Positives = 41/148 (27%), Gaps = 2/148 (1%)
Query: 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD 257
+ ++ + + E LC++ LE +L + + V
Sbjct: 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA 366
Query: 258 YESALEHL--VLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315
YE A + ++ + + + ++ + G + K + T
Sbjct: 367 YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426
Query: 316 RGEDHLSVASIFIRLADLYYRIGKLRES 343
G H + + R++
Sbjct: 427 HGPSHPITKDLEAMRMQTEMELRMFRQN 454
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L EA E + K +R A + LG T + ++
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQ-----KEPEREEA----WRSLGLTQAENEKDGLAIIA 73
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235
+ DP+ LA +H + A + L ++
Sbjct: 74 LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 16/112 (14%)
Query: 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472
+ G+ + + EA +FE+ K E +GL + + A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREE--------AWRSLGLTQAENEKDGLAIIA 73
Query: 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524
AR + V++ LA ++ A+ L L + +
Sbjct: 74 LNHAR--------MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 13/115 (11%), Positives = 39/115 (33%), Gaps = 1/115 (0%)
Query: 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352
E + + + + ++ + + + + + + Y + ++
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368
Query: 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407
+K P + +A+ ++ +Y L K L+KA+ ++E G
Sbjct: 369 PYSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 3/155 (1%)
Query: 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
C++ V + Q EA+ D A E +C+
Sbjct: 267 CTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAK-HYKSPSELLEICELSQ 325
Query: 228 EIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN--EVAAID 285
E +++ V D+E AL++ + VA++
Sbjct: 326 EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385
Query: 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320
+ +G +YM L + +K + + + G+DH
Sbjct: 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 15/111 (13%), Positives = 35/111 (31%)
Query: 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAEN 221
++ + E E DS+ + + ++ A
Sbjct: 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALK 361
Query: 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272
+KI++ + +H SL A+ + +Y + + + L A +M
Sbjct: 362 YGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 29/168 (17%)
Query: 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ + + AL + + +G M ++ EA +F ++
Sbjct: 15 LAADKKDWKGALDAFSA---VQDPHSRICFN-------IGCMYTILKNMTEAEKAFTRSI 64
Query: 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL--------EQECGSC 487
++ + Q G+ Q + + A + +EA L +
Sbjct: 65 --------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116
Query: 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD 535
L V N+A Y + A E L ++ E + ID
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP---RHSKIDK 161
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 49/240 (20%)
Query: 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKL 389
A+ + + + + T A+ IY + AL+
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS-------IYFYDQNPDAALRT 123
Query: 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449
L + L A +L + R AR + ++
Sbjct: 124 LHQGDSL------------ECMAMTVQILLKLDRLDLARKELKKM---QDQDEDA----- 163
Query: 450 GIVLNQMGLACLQLY----RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505
L Q+ A + L ++ +A +F+E TL + + AA + A
Sbjct: 164 --TLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHMAQ 213
Query: 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565
GR E A +L+ L + + L L + G+ + L L D++
Sbjct: 214 GRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKL 389
A +Y G++ E++ + + ++AIY+ + ++A L
Sbjct: 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------IMGLAAIYQIKEQFQQAADL 92
Query: 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
A L ++ G + +A+ FE +
Sbjct: 93 YAVAFALGKNDYTPVF-------HTGQCQLRLKAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 27/153 (17%)
Query: 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA--QMGVMLYVVGRYGEA 427
+TE +I A+ + + L+ + +D ++ Y GR EA
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDM---------MDDIYSYAYDFYNKGRIEEA 55
Query: 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487
F + + + + +A +L+ A +
Sbjct: 56 EVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA--------FAL 99
Query: 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520
+ + L A E E +++
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 18/145 (12%)
Query: 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327
A++ I ++ + I S + + R +EA ++ D +
Sbjct: 23 ATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYN-VDYI 73
Query: 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387
+ LA +Y + +++ A T L +A
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQ-------CQLRLKAPLKAK 124
Query: 388 KLLQKAMKLLEDTPGYHSTIAGIEA 412
+ + ++ D + ++A
Sbjct: 125 ECFELVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 8e-04
Identities = 11/116 (9%), Positives = 30/116 (25%), Gaps = 17/116 (14%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRS 177
++ A + + GR EEA D + M L ++
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYNVDY--IMGLAAIYQIKEQFQQA 89
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233
Y + + + ++ +A+ + +++ +
Sbjct: 90 ADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 16/146 (10%), Positives = 47/146 (32%), Gaps = 5/146 (3%)
Query: 180 CYESGLEIQIEALGDSDPRVAETCRYL---AEAHIQAMQFDEAENLCKKILEIHREHGHS 236
C+ + + + D +V + + E ++++ +C+ I+ + E
Sbjct: 264 CFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPD 323
Query: 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN--EVAAIDVSIGNIYMS 294
++ + E AL + + + +G + +
Sbjct: 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383
Query: 295 LCRFDEAIFSYQKGLTVFKATRGEDH 320
F +A+ + + + + T G +H
Sbjct: 384 QGMFPQAMKNLRLAFDIMRVTHGREH 409
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
L+ LA G +E+A V + + D ++F ++ LG +MG D
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHYDSRF--FLGLGACRQAMGQYDL 73
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236
++ Y G + D + AE +Q + EAE+ E+
Sbjct: 74 AIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
Query: 237 ASLEEAADRRLMALVYEAKADYE 259
L L A+ + + +E
Sbjct: 126 XELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 24/139 (17%)
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+ + D L LA Y+ G ++ + +
Sbjct: 2 PLGSGGGTIAMLNEI-----SSDTLEQ---LYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416
+ + A +A+ +++ A+ + P +
Sbjct: 54 DSRF---------FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF-------HAAE 97
Query: 417 MLYVVGRYGEARSSFESAV 435
L G EA S A
Sbjct: 98 CLLQXGELAEAESGLFLAQ 116
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 24/133 (18%)
Query: 132 EEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191
+ LE + +G+D L +F+ LG T + D ++ + L+
Sbjct: 2 QAITERLEAMLA-----QGTDNMLLRFT----LGKTYAEHEQFDAALPHLRAALDF---- 48
Query: 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALV 251
DP + ++L + A + L + G ++E V
Sbjct: 49 ----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQ-------V 97
Query: 252 YEAKADYESALEH 264
+ + E ALEH
Sbjct: 98 FLRRLAREDALEH 110
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.8 bits (97), Expect = 2e-04
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ--MGVMLYVVGRYGEARSSFES 433
Y +++EA++ QKA++L P EA +G Y G Y EA ++
Sbjct: 10 AYYKQGDYDEAIEYYQKALEL---DPRSA------EAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493
A+ E +G A + +EA E +++A LE +
Sbjct: 61 AL-------ELDPRSA-EAWYNLGNAYYKQGDYDEAIEYYQKA---LE-----LDPRSAE 104
Query: 494 VYSNLAATYDALGRVEDAIE 513
+ NL Y G ++AIE
Sbjct: 105 AWYNLGNAYYKQGDYDEAIE 124
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.4 bits (96), Expect = 2e-04
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
+GN Y +DEAI YQK L + A + L + YY+ G E+ Y
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407
+ AL + P A A + N Y +++EA++ QKA++L P
Sbjct: 59 QKALEL--DPRSAEAWYNLGN-------AYYKQGDYDEAIEYYQKALEL---DPRSA--- 103
Query: 408 AGIEAQ--MGVMLYVVGRYGEARSSFESA 434
EA +G Y G Y EA ++ A
Sbjct: 104 ---EAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 584 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 100.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.98 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.98 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.98 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.95 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.93 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.91 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.89 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.84 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.82 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.78 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.76 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.72 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.52 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.51 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.5 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.44 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.44 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.41 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.36 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.29 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.16 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.87 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.83 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.77 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.57 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.5 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.5 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.39 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.36 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.32 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.27 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.26 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.25 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.15 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.92 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.22 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.15 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.88 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.73 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.3 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.23 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.11 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.95 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.88 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.86 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.86 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.47 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.38 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.94 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.84 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.52 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.15 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.63 | |
| 3re2_A | 472 | Predicted protein; menin, multiple endocrine neopl | 89.37 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 89.31 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.24 | |
| 3u84_A | 550 | Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik | 87.35 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.3 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 86.11 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 85.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.74 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.42 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 85.09 | |
| 4gq4_A | 489 | Menin; tumor suppressor, nucleus, transcription-tr | 84.75 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 81.21 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 80.54 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=317.28 Aligned_cols=385 Identities=18% Similarity=0.207 Sum_probs=345.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+|..++..|+ +++|+..++++++. +|+...++..+|.++...|++++|+.++++++... +..+
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~- 67 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA- 67 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence 46888999999 99999999999886 34456778899999999999999999999999764 2222
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
.++..+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|+++++..|...
T Consensus 68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 135 (388)
T 1w3b_A 68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY- 135 (388)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence 45999999999999999999999999998 788889999999999999999999999999998765432
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
.++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 45889999999999999999999998875 5667789999999999999999999999999998
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.|....++..+|.++...|++++|+..+++++.+.. ....++..+|.++...|++++|+..|+++++
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 688889999999999999999999999999999853 2367889999999999999999999999998
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
..+.. ..++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|++++|+.++++
T Consensus 266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75543 567889999999999999999999999986 233467899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+++. .|+...++..+|.++...|++++|+.+|++++++ +|+...++.++|.++..+|+
T Consensus 331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 9987 7888899999999999999999999999999997 89999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=305.81 Aligned_cols=372 Identities=18% Similarity=0.215 Sum_probs=335.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.+|..++..|++++|+..++++++.. +++. .++..+|.++...|++++|+.++++++.. +|..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 46888999999999999999998774 3333 34788999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..++..+|.++...|++++|+..|++++++.|.. ..++..+|.++...|++++|+..|++++.. .|
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 132 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence 9999999999999999999999999999875433 345899999999999999999999998875 56
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 200 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---- 200 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----
Confidence 66778899999999999999999999999987 688889999999999999999999999999999852
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
....++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..|++++++
T Consensus 201 -----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 266 (388)
T 1w3b_A 201 -----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-- 266 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 346789999999999999999999999999986654 677889999999999999999999999984
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++
T Consensus 267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++ +|+...++..+|.++...|++++|. ..++.++..+|+....
T Consensus 333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADA 375 (388)
T ss_dssp TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHH
T ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHH
Confidence 87 7889999999999999999999999 8999999888875543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=302.63 Aligned_cols=433 Identities=12% Similarity=0.077 Sum_probs=346.1
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
.....+..++..+...|+ +++|+..+++++... |+. ..+..+|.+|...|++++|+..|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~---------p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT---------GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY---- 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH---------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG----
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC---------CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc----
Confidence 456778899999999999 999999999998641 221 45678999999999999999999988643
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--------HHhCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI--------EALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (584)
+.++ .++..++.+|...|++++|+..|++...... .......+....++..+|.+|...|++++|+
T Consensus 147 --~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 147 --NRSS----ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp --GTCH----HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --ccch----hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 1122 4588999999999999999999986322100 0000012456889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC---------------------------------------------------------------C
Q 007930 221 NLCKKILEIHREHGHS---------------------------------------------------------------A 237 (584)
Q Consensus 221 ~~~~~al~~~~~~~~~---------------------------------------------------------------~ 237 (584)
..|+++++..+..... .
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 9999998765431100 0
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
.+....++..++.++...|++++|+..|++++.. .+....++..++.++...|++++|+..+++++..
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 368 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------ 368 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Confidence 0122455667777777778888888777776643 2333445667777777888888888888777755
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.|....++..+|.+|...|++++|+.+|++++++.. ....++..++.++...|++++|++.|++++...
T Consensus 369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP---------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 567788999999999999999999999999998742 235788999999999999999999999998775
Q ss_pred HhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
+.. ..++..+|.+|...|++++|+.+|+++++. .+....++..+|.++...|++++|+.+|++++
T Consensus 438 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 438 QGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp TTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 543 457788999999999999999999999875 22235789999999999999999999999999
Q ss_pred HHHHHHhCCCCCch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 478 GVLEQECGSCHLDT-LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 478 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+...... .+|+. ..++..+|.++...|++++|+..|++++++ .|+...++..++.+|...|++++|. .
T Consensus 503 ~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~ 571 (597)
T 2xpi_A 503 LLVKKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI-T 571 (597)
T ss_dssp HHHHHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred Hhhhccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH-H
Confidence 9865432 25553 789999999999999999999999999998 7888899999999999999999999 9
Q ss_pred HHHHHHhhhhhhhHH
Q 007930 557 SLENLLDSNAYRVKK 571 (584)
Q Consensus 557 ~l~~~~~~~~~~~~~ 571 (584)
.++.+++.+|+....
T Consensus 572 ~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 572 HLHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCChHH
Confidence 999999988876553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=280.67 Aligned_cols=402 Identities=12% Similarity=0.089 Sum_probs=338.1
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
.+..++.+|..++..|+ +++|+..|++++.. . |+ ..++..+|.++...|++++|+..++++++..
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~------~---p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALEL------K---ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHH------C---CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhc------C---cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence 46789999999999999 99999999999986 2 22 6788899999999999999999999999874
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-----------------------h--------------
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA-----------------------L-------------- 192 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------- 192 (584)
+... .++..+|.++...|++++|+..|++++...... +
T Consensus 70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3333 458899999999999999999999987652100 0
Q ss_pred ----------C------------------------CCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHhC-
Q 007930 193 ----------G------------------------DSDPRVAETCRYLAEAHIQ---AMQFDEAENLCKKILEIHREHG- 234 (584)
Q Consensus 193 ----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~- 234 (584)
. -..|.....+..+|.++.. .|++++|+..++++++..+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0 0002336777888888876 8999999999999999543332
Q ss_pred -CCCC----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 235 -HSAS----LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 235 -~~~~----~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
.+.. +..+.++..+|.++...|++++|+..+++++.. .+. ..++..+|.++...|++++|+..+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2222 556778999999999999999999999998875 344 8889999999999999999999999998
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 007930 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKL 389 (584)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 389 (584)
.. .|....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.+
T Consensus 298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 86 5667788999999999999999999999999987533 246889999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh---hCCH
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ---LYRI 466 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~ 466 (584)
++++++..+.. ..++..+|.++...|++++|+.++++++.......... ....++..+|.++.. .|++
T Consensus 361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence 99999886554 35778999999999999999999999999765432211 113488999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
++|+.++++++.. .|....++..+|.++...|++++|..+|++++++ +|+...++..+
T Consensus 432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence 9999999999998 7888899999999999999999999999999998 78877777655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=291.04 Aligned_cols=369 Identities=16% Similarity=0.099 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC-----------------------------chhhhHHHHHHH
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS-----------------------------DRALAKFSGYMQ 163 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------~~~~~~~~~~~~ 163 (584)
....+++.+|.+|...|++++|+..|+++++..+..... ..+......+..
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 357889999999999999999999999998864221000 000000012333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAA 243 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 243 (584)
++..|...|++++|+..|++++.. +....++..++.++...|++++|+.+|+++++..+....
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 340 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD-------- 340 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT--------
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH--------
Confidence 366677888999999999888765 455778999999999999999999999999987665443
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
++..++.++...|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|+++++. .|..
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 406 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQF 406 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCC
Confidence 3888999999999999999999988753 4556778899999999999999999999999987 6777
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
..++..++.++...|++++|+.+|++++..... ...++..++.++...|++++|+++|+++++..+..
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 474 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD--- 474 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 889999999999999999999999999987432 25688899999999999999999999999875443
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
..++..+|.++...|++++|+.+|+++++.....+.. +.....++..+|.++...|++++|+..++++++.
T Consensus 475 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 545 (597)
T 2xpi_A 475 ----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---- 545 (597)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 5678899999999999999999999999987664432 2223688999999999999999999999999998
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.|....++..+|.+|...|++++|..+|++++++ +|+...++..++.+|.
T Consensus 546 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 ----STNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595 (597)
T ss_dssp ----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred ----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence 7888899999999999999999999999999998 8999999999998874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=281.60 Aligned_cols=425 Identities=15% Similarity=0.121 Sum_probs=327.6
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+..++.+|..++..|+ +++|+..|++++.. +|....++..+|.+|...|++++|+..|+++++..
T Consensus 23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIEL---------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhh---------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 357789999999999999 99999999999986 34457889999999999999999999999999874
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILE 228 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (584)
+..+ .++..+|.++...|++++|+..|+ ++.. .|.....+ ...+...+...+|+..+++++.
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~--------~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSL--------NGDFDGAS---IEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhc--------CCCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 458899999999999999999995 6655 23322221 2234445556778888888876
Q ss_pred HHHHhCCCCCHH-----------------------------HHHHHHHH--------HHHHHHhccHHHHHHHHHHHHHH
Q 007930 229 IHREHGHSASLE-----------------------------EAADRRLM--------ALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 229 ~~~~~~~~~~~~-----------------------------~a~~~~~l--------~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
..+.......+. .......+ +......|++++|+..+++++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 543322111110 00112222 22333345777777777766543
Q ss_pred HHHcCCcc----hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 272 MIANGQEN----EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 272 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.++.+ ..+.++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.++
T Consensus 232 ---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 232 ---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 22222 23667899999999999999999999999997 566 889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (584)
++++..... ...++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 300 ~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 300 QKAVDLNPE---------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence 999988532 36789999999999999999999999999986654 35778999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc--
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-- 505 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 505 (584)
+.++++++.. .+....++..+|.++...|++++|+.+|+++++....... .......+..+|.++...
T Consensus 364 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 364 EAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence 9999999986 2233568899999999999999999999999998644322 223334577889999999
Q ss_pred --------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 506 --------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 506 --------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
|++++|+.+|++++++ +|+...++..+|.++..+|++++|. ..++.++...|.....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILARTMDEK 498 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--CHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCcHHH
Confidence 9999999999999998 8888999999999999999999999 8999998877764443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=284.42 Aligned_cols=397 Identities=16% Similarity=0.103 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
..+.++..+|..++..|++++|+..|++++... ++ + .++..+|.++...|++++|+..++++++.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-P----VFYSNLSACYVSVGDLKKVVEMSTKALEL----- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-H----HHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence 357788999999999999999999999999874 21 2 45899999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC------------------------------------
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS------------------------------------ 236 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------------ 236 (584)
+|....++..+|.++...|++++|+..|++++...+.....
T Consensus 69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 78888999999999999999999999999998765311000
Q ss_pred -----------------------------------CCHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHc---
Q 007930 237 -----------------------------------ASLEEAADRRLMALVYEA---KADYESALEHLVLASMVMIAN--- 275 (584)
Q Consensus 237 -----------------------------------~~~~~a~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~--- 275 (584)
..+.....+..+|.++.. .|++++|+..+++++......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 001125567778888776 899999999999998743221
Q ss_pred -CC----cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 276 -GQ----ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 276 -~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
++ .+....++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 2667889999999999999999999999999987 566 899999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+..... ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+
T Consensus 297 ~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 297 LKLDSN---------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTTCTT---------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhcCcC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 887432 24688999999999999999999999999875543 35778999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH---cCC
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA---LGR 507 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 507 (584)
+++++... +....++..+|.++...|++++|+.++++++....... .......++..+|.++.. .|+
T Consensus 361 ~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 361 FSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999852 22346889999999999999999999999999732211 111124589999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+++|+.++++++.+ +|....++..+|.++...|++++|. ..++.+++..|+....
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccccHHH
Confidence 99999999999998 7888899999999999999999999 8999999888876554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.58 Aligned_cols=413 Identities=14% Similarity=0.047 Sum_probs=298.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 163 (584)
.++ .+.++..+++.+....+.. +++..+..++.||.++..+|++++|+++|++|+++.+...+.......+.++.+
T Consensus 24 l~~-~~~~l~~~e~~~~~~~~~~---~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n 99 (472)
T 4g1t_A 24 LME-GENSLDDFEDKVFYRTEFQ---NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN 99 (472)
T ss_dssp TTT-TCCCHHHHHHHHHHHTTSC---C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 345 5667777777665543332 344457788999999999999999999999999998765443322222356899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM--QFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
+|.+|..+|++++|+.++++++.+.+...+..++..+.++..+|.++...| ++++|+.+|++++++.|...
T Consensus 100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------- 172 (472)
T 4g1t_A 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------- 172 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-------
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-------
Confidence 999999999999999999999999988776666777888888888877654 79999999999999876433
Q ss_pred HHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----HcCChhHHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYE---AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM----SLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 242 a~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~ 314 (584)
.++..++.++. ..++.++|++.+++++.+ .|....++..+|..+. ..|++++|+.++++++..
T Consensus 173 -~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--- 242 (472)
T 4g1t_A 173 -EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--- 242 (472)
T ss_dssp -HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---
T ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---
Confidence 33566666644 456778899999999875 4555566666766554 457889999999999987
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh--------------
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-------------- 380 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 380 (584)
.|....++..+|.+|...|++++|+..++++++..+ ....++..+|.+|...
T Consensus 243 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 243 -----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP---------NNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp -----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------TCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred -----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---------ChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 788889999999999999999999999999999853 3467888888887653
Q ss_pred -----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 007930 381 -----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQ 455 (584)
Q Consensus 381 -----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (584)
+.+++|+..+++++...+.. ..++..+|.++...|++++|+.+|++++.+. ..+.....++..
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~ 376 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLR 376 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHHHHH
Confidence 34567777888877776554 3356689999999999999999999998741 112223345666
Q ss_pred HHHHH-HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007930 456 MGLAC-LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID 534 (584)
Q Consensus 456 l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~ 534 (584)
+|.+. ...|++++|+.+|++++++ .|....... ....+...+++++.. +|.++
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~ 430 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADS 430 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCH
Confidence 66554 5779999999999999998 565433221 223455667777776 88899
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 535 DEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.++.+||.+|..+|++++|+ .+++.+++.++..+.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~-~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQAD-EDSERGLESGSLIPS 465 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCc
Confidence 99999999999999999999 999999988776655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=273.72 Aligned_cols=399 Identities=15% Similarity=0.050 Sum_probs=288.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
..+++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.++++++.
T Consensus 44 ~~~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 44 FQNREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp SCC---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33555667788899999999999 99999999999999888765555677888999999999999999999999999999
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HhCCHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSM--GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI---QAMQFDE 218 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~ 218 (584)
+.+...+..++... .++..+|.++... ++|++|+.+|++++++ +|....++..++.++. ..++.++
T Consensus 123 i~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 123 VCEKFSSPYRIESP-ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHSCCSSCCCCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HhHhcccccchhhH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 98876655443222 4577777766654 5799999999999998 6777777777777754 4577789
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYE----AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
|++.+++++++.+... .++..+|..+. ..|++++|+.++++++.. .+....++..+|.+|..
T Consensus 194 al~~~~~al~l~p~~~--------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQ--------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRR 259 (472)
T ss_dssp THHHHHHHHHHCSSCH--------HHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcch--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHH
Confidence 9999999998754322 33555555444 457888999999998774 66777889999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-------------------ccHHHHHHHHHHHHHHHh
Q 007930 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-------------------GKLRESKSYCENALRVCA 355 (584)
Q Consensus 295 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~ 355 (584)
.|++++|+..++++++. .|....++..+|.+|... +.+++|+..+++++.+..
T Consensus 260 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 99999999999999998 788889999999988654 346778888888887743
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH-HHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM-LYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a 434 (584)
. ...++..+|.++...|++++|+.+|++++.+.+. ......++..+|.+ +...|++++|+.+|+++
T Consensus 332 ~---------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 332 N---------LFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp T---------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred c---------hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 3467889999999999999999999999875321 22223445566654 45789999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+.+. +.... ..+....+...+++++.. +|..+.++..||.+|...|++++|+++
T Consensus 399 l~i~--------~~~~~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 399 VKIN--------QKSRE----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHSC--------CCCHH----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HhcC--------cccHH----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9851 11111 112234455667777777 788889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
|++|+++ .|..+.+...+|
T Consensus 453 y~kALe~--------~~~~p~a~~~~G 471 (472)
T 4g1t_A 453 SERGLES--------GSLIPSASSWNG 471 (472)
T ss_dssp ---------------------------
T ss_pred HHHHHhc--------CCCCCcHhhcCC
Confidence 9999998 555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.59 Aligned_cols=396 Identities=16% Similarity=0.125 Sum_probs=296.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
.-..+|..+..++.+|..++..|+ +++|+..|++++.. .|....++..+|.++...|++++|+..|++++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDG---------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344677788888889999999998 89999999988875 33346778888999999999999999999888
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHhCCHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA---ETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A 219 (584)
+.. +... .++..+|.++...|++++|+..|++++.. .|... .++..++.++..
T Consensus 88 ~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~------- 143 (450)
T 2y4t_A 88 QLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDEM------- 143 (450)
T ss_dssp HHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHH-------
T ss_pred hcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHH-------
Confidence 774 2222 44788888888899999999888888876 45444 555555444211
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
..+..+|.++...|++++|+..+++++.. .+....++..+|.++...|+++
T Consensus 144 -----------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 144 -----------------------QRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp -----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCGG
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHCCCHH
Confidence 12556677788888888888888887764 4455677888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH---------H
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG---------L 370 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~ 370 (584)
+|+..|+++++. .|....++..+|.++...|++++|+.++++++..... ....... .
T Consensus 195 ~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 195 KAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp GGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHH
Confidence 999999998887 5666788889999999999999999999998876422 1222111 2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..+|.++...|++++|+.+|++++.+.+. .......++..+|.++...|++++|+.++++++.+ .+...
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~ 329 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNV 329 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccH
Confidence 44599999999999999999999987543 23333567889999999999999999999999986 23346
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH------------HHHcC-----ChHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT------------YDALG-----RVEDAIE 513 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~~A~~ 513 (584)
.++..+|.++...|++++|+.+|++++++ .|+...++..++.+ |..+| +.+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 88999999999999999999999999998 78888899999955 44455 5667788
Q ss_pred HHHH-HHHHHHHHhCCCC--hhHHHHHHHHHHHHHHhchHHHHH
Q 007930 514 ILEY-ILKVREEKLGTAN--PDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 514 ~~~~-a~~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.|++ ++........... .........++.+|..+|+.+++.
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8886 5554111110000 113446677788888888777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=261.30 Aligned_cols=385 Identities=17% Similarity=0.115 Sum_probs=303.8
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|....++..+|..+...|++++|+..|++++... +..+ .++..+|.++...|++++|+..|+++++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 89 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIQL--- 89 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 56778899999999999999999999999999763 2222 45889999999999999999999999998
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
+|....++..+|.++...|++++|+..|+++++..+.. .....++..++.++.
T Consensus 90 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~----------------- 142 (450)
T 2y4t_A 90 -----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-----NEEKEAQSQLIKSDE----------------- 142 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-----HHHHHHHHHHHHHHH-----------------
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHHH-----------------
Confidence 67778899999999999999999999999998754321 111123444443321
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
...+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++
T Consensus 143 -----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 143 -----------MQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 223456788889999999999999999987 6778889999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc-----HHHHHHHHHHHHHHhccHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST-----IAGIEAQMGVMLYVVGRYG 425 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 425 (584)
+..... ...++..+|.++...|++++|+.++++++...+........ .......+|.++...|+++
T Consensus 204 ~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 204 SKLKND---------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHCS---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 998633 36789999999999999999999999999875543110000 0011234499999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|+.+|++++.+. +..+.....++..+|.++...|++++|+.++++++++ .|....++..+|.++...
T Consensus 275 ~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 275 DATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHh
Confidence 9999999999852 2222223568899999999999999999999999998 788889999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH------------HHhc-----hHHHHHHHHHHHHHhhhhhh
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL------------KETG-----RARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~------------~~~g-----~~~~A~~~~l~~~~~~~~~~ 568 (584)
|++++|+.+|++++++ +|+...++..++.+. ..+| +.+++...+.+.++..+|+.
T Consensus 343 ~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999997 788888999999554 4444 34455634444466655553
Q ss_pred h------------HHHHHhHhhcCCC
Q 007930 569 V------------KKEVTKRRSGFGF 582 (584)
Q Consensus 569 ~------------~~~~~~~~~~~~~ 582 (584)
. ...+.++|..||+
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 2 2246667777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=251.21 Aligned_cols=344 Identities=17% Similarity=0.172 Sum_probs=301.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+.++..+|.++...|++++|+.+|++++... +.++.....++..+|.++...|++++|+.++++++.+....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence 46677899999999999999999999999873 34444444679999999999999999999999999998765
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc----------------
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD---------------- 257 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~---------------- 257 (584)
.+.+....++..+|.++...|++++|+.++++++++.+... +....+.++..+|.++...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 44577889999999999999999999999999999999887 446677889999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 258 ----YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 258 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999987753 345667799999999
Q ss_pred HHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007930 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ 413 (584)
Q Consensus 334 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (584)
+...|++++|+.++++++.+... ..++.....++..+|.++...|++++|+.++++++.+.+.. +.......++..
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 312 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWS 312 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHh---CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 99999999999999999999876 34566778899999999999999999999999999999887 556667888999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
+|.++...|++++|+.++++++++....+. .+....++..+|.++...|+...+...+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 999999999999999999999999888753 34567889999999999998754443333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=253.55 Aligned_cols=343 Identities=16% Similarity=0.142 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP-RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
..+..+|.++...|++++|+.+|++++.. .+.++ ....++..+|.++...|++++|+.++++++.+.+... +
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence 45788999999999999999999999998 22233 3468999999999999999999999999999988776 4
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------------------
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-------------------- 297 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 297 (584)
.+..+.++..+|.++...|++++|+.++++++.+....++......++..+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 567788899999999999999999999999999999888888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+... ..++.....++..+|.++
T Consensus 163 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHH
Confidence 9999999999999987764 45777889999999999999999999999999999877 345667788999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (584)
...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+....+. .+....++..+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 314 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLG 314 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999886 556667888999999999999999999999999999887653 345678899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 458 LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.++...|++++|+.++++++++...... .+....++..+|.++...|+...+...+.+.
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 9999999999999999999999877644 5577889999999999999885544443333
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=262.85 Aligned_cols=391 Identities=13% Similarity=0.076 Sum_probs=304.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..+|.++...|+ +++|+..+++++.. +|....++..+|.++...|++++|+..|+ ++...
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEI---------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred hCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 367788999999999999999 99999999999986 34457789999999999999999999995 66554
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----------------------------C
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDS-----------------------------D 196 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------------~ 196 (584)
+.. ... ....+...+...+|+..+++++.......... +
T Consensus 123 ~~~-----~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 123 GDF-----DGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred CCC-----ChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 221 111 11123334445677777777755421111111 1
Q ss_pred hHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 197 PRVAETCRYLA--------EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 197 ~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
+........++ ......|++++|+..++++++..+.... .....+.++..+|.++...|++++|+..++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11111222222 2233445788888888888876554321 11234667999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 348 (584)
+.. .+. ..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..++
T Consensus 270 ~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 270 INL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 875 444 788999999999999999999999999988 67788899999999999999999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEAR 428 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 428 (584)
+++..... ...++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+
T Consensus 335 ~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 335 KAQSLNPE---------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-------PEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHHHCTT---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------THHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHH
Confidence 99998533 24678999999999999999999999999986554 457788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 429 SSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
.+|++++........... ....+..+|.++... |++++|+.+|+++++. +|....++..+
T Consensus 399 ~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l 468 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGL 468 (537)
T ss_dssp HHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 999999998766543221 234467788999999 9999999999999998 88888999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.+|...|++++|+.+|++++++
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999998
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-31 Score=247.22 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..++++++..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----- 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Confidence 45889999999999999999999999998 67778999999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHH------------HHHHHHcCChhHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN---EVAAIDVSI------------GNIYMSLCRFDEAIF 303 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~ 303 (584)
..++..+|.++...|++++|+..+++++.. .+ ....++..+ |.++...|++++|+.
T Consensus 71 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 71 ---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 256899999999999999999999998763 44 555555555 799999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
.++++++. .|....++..+|.++...|++++|+..+++++..... ...++..+|.++...|++
T Consensus 142 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 142 FLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD---------NTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCH
Confidence 99999987 6777889999999999999999999999999987422 357899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 007930 384 EEALKLLQKAMKLLEDTPGYHST-----IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGL 458 (584)
Q Consensus 384 ~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (584)
++|+..++++++..+........ .......+|.++...|++++|+..+++++... +........++..+|.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHH
Confidence 99999999999876554110000 01123356899999999999999999999862 2222333466788999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
++...|++++|+.+++++++. +|....++..+|.++...|++++|..+|++++++ +|+...+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~ 344 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIRE 344 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHH
Confidence 999999999999999999998 7888899999999999999999999999999998 888889999
Q ss_pred HHHHHHHHhchHH
Q 007930 539 RLAELLKETGRAR 551 (584)
Q Consensus 539 ~l~~~~~~~g~~~ 551 (584)
.++.++..+++.+
T Consensus 345 ~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 345 GLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999988776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-30 Score=240.68 Aligned_cols=336 Identities=16% Similarity=0.090 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
+..+..+|.+++..|++++|+..|++++... +..+ .++..+|.++...|++++|+..++++++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999874 2333 45899999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HhCCCC----CHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR---EHGHSA----SLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
.|....++..+|.++...|++++|+..++++++..+ ...... .......+..+|.++...|++++|+..+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 677779999999999999999999999999998755 322110 000011233448999999999999999999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
++.. .+....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8875 4555688999999999999999999999999987 6778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIAN---------GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++++.... .+.... ....+|.++...|++++|+..+++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999988533 222211 23456899999999999999999999876542 333445677899999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.+++++++. .+....++..+|.++...|++++|+.+|++++++ .|+...++..+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 9999999999999999986 2334678999999999999999999999999998 78888888888
Q ss_pred HHHHHHcC
Q 007930 499 AATYDALG 506 (584)
Q Consensus 499 a~~~~~~g 506 (584)
+.++...+
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-29 Score=239.90 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=279.7
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
+..+..+..+|..+...|++++|+.+|+++++.. +.++.....++..+|.++...|++++|+.++++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4456777889999999999999999999999873 44444444679999999999999999999999999998775
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc--------------
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD-------------- 257 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~-------------- 257 (584)
.+++....++..+|.++...|++++|+.++++++++.+... +.+..+.++..+|.++...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 44678889999999999999999999999999999988876 456778889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 258 ---YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 258 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
+++|+.++++++.+....++.+....++..+|.++...|++++|+.++++++++..... +......++..+|.++
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999987743 3455677999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
...|++++|+.++++++.+... ..+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVE---LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 9999999999999999999876 34556678899999999999999999999999999998887 5566677889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
|.++...|++++|..++++++++.+.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999997544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-28 Score=230.11 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...+...|..+...|++++|+.+|+++++.. +.++.....++..+|.++...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4567788999999999999999999999873 34444444679999999999999999999999999998776 3
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc-----------------
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD----------------- 257 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~----------------- 257 (584)
+.+....++..+|.++...|++++|+..+++++++.+... +....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 4567789999999999999999999999999999998876 446667889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 258 ---YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 258 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
+++|+.++++++......++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999987753 3456677999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
...|++++|+.++++++.+... ..++.....++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 9999999999999999999876 34566778899999999999999999999999999998876 5566677888999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
|.++...|++++|..++++++.+.+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999976543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-29 Score=238.21 Aligned_cols=313 Identities=16% Similarity=0.187 Sum_probs=278.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.+.....+..+|..+...|++++|+.+|+++++..+. +....+.++..+|.++...|++++|+.++++++.+....
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3567778889999999999999999999999997332 334456789999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------------
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK---------------- 339 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 339 (584)
++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 88999999999999999999999999999999999987764 457788999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 340 -LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 340 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++|+.++++++.+... ..+++....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++
T Consensus 198 ~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 99999999999998876 34557778899999999999999999999999999999886 55566677899999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.++++++.+....+. ......++..+|.++...|++++|+.++++++.+...... .+....++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHH
Confidence 9999999999999999999887643 3445788999999999999999999999999999877643 45667899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
|.+|...|++++|..+|++++++.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=234.65 Aligned_cols=396 Identities=13% Similarity=0.097 Sum_probs=324.3
Q ss_pred CCcHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh----cCChhhHHHHHH
Q 007930 68 PDLGPFLLKLARETIS----SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCS----LGRFEEAVPVLE 139 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 139 (584)
+..+..++.+|..+.. .++ +++|+.+|+++.+. . ...+++.||.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4567889999999988 788 99999999999863 1 25688899999999 999999999999
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSS----MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ--- 212 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 212 (584)
++.+. .++ .+++.+|.+|.. .+++++|+.+|+++.+. ....++..+|.+|..
T Consensus 104 ~a~~~-------~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALK-------GLP----QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHT-------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHC-------CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 99753 122 347889999998 89999999999998764 246788999999998
Q ss_pred -hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 213 -AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA----KADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 213 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
.+++++|+.+|+++.+. . ...++..+|.+|.. .+++++|+.+|+++... ....++..
T Consensus 163 ~~~d~~~A~~~~~~a~~~----~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQ----G------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 88999999999999864 1 13568999999998 89999999999998752 23567889
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCC
Q 007930 288 IGNIYMS----LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 288 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++.+..
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----- 289 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----- 289 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----
Confidence 9999997 89999999999998764 235688899999998 899999999999997541
Q ss_pred CCChHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc---cHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEAL-----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG---RYGEARSSF 431 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 431 (584)
...++..+|.+|... +++++|+.+|+++.+. +. ..++..+|.+|...| ++++|+.+|
T Consensus 290 ------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 290 ------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp ------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 246888999999998 8999999999999864 11 457789999999866 899999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH---
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA--- 504 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 504 (584)
+++++. . ...+++.+|.+|.. .+++++|+.+|+++++. ....++.+||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence 999873 1 25789999999999 89999999999999875 236799999999999
Q ss_pred -cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 505 -LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 505 -~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
.+++++|..+|+++++.. ++.|....+..+++.++... .+.|. ...+..++..++.....
T Consensus 415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~~~~~~~ 475 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYAPEAWAR 475 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHHHHHHHH
Confidence 899999999999999972 11266888999999887653 34444 33444454445444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-28 Score=224.92 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
....+...|..+...|++++|+.+++++++..+. +....+.++..+|.++...|++++|+.++++++......++.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 3456778899999999999999999999997322 334456789999999999999999999999999999988888
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-------------------
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK------------------- 339 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 339 (584)
+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|+
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 89999999999999999999999999999999987754 345667899999999999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 340 -LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 340 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++|+.++++++.+.+. ..+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++
T Consensus 158 ~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Confidence 99999999999998776 34567778899999999999999999999999999998886 55666677899999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.++++++.+....+. +.....++..+|.++...|++++|+.++++++.+...... .+....++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 9999999999999999998877543 3456788999999999999999999999999999877644 45667799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|.+|...|++++|..++++++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-29 Score=230.76 Aligned_cols=301 Identities=15% Similarity=0.156 Sum_probs=260.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 276 (584)
+.....+..+|..+...|++++|+..++++++..+..... +..++.++...|++++|+..+++++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC--------LPVHIGTLVELNKANELFYLSHKLVDL----- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT--------HHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh--------HHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence 3345677889999999999999999999999887665533 778889999999999999999998874
Q ss_pred CcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.+....++..+|.++...| ++++|+.+++++++. .|....++..+|.++...|++++|+.++++++....
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 4556678899999999999 999999999999987 577788899999999999999999999999999864
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
. ....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++
T Consensus 157 ~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 157 G---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp T---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 23567779999999999999999999999876554 5788899999999999999999999999
Q ss_pred HHHHHcCCCCC-chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 436 VKLRASGESKS-AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
......+.... +....++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence 98766543322 334578999999999999999999999999998 777788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHhchHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELL-KETGRAR 551 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (584)
|++++++ +|+...++..++.++ ...|+.+
T Consensus 293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 9999997 788899999999998 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-26 Score=223.99 Aligned_cols=353 Identities=14% Similarity=0.065 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 007930 114 LVMSLHMLAAIYCS----LGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSS----MGLLDRSVWCYESGL 185 (584)
Q Consensus 114 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 185 (584)
.+.+++.+|.+|.. .+++++|+.+|+++.+. .++ .+++.+|.+|.. .+++++|+.+|+++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GYT----PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 36788899999999 89999999999999864 122 458899999999 999999999999997
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH----hcc
Q 007930 186 EIQIEALGDSDPRVAETCRYLAEAHIQ----AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA----KAD 257 (584)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~ 257 (584)
+. ....+++.||.+|.. .+++++|+.+|+++.+.. ...++..+|.+|.. .++
T Consensus 107 ~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 107 LK----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCC
Confidence 64 245778899999998 899999999999997641 13568999999998 889
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 258 YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS----LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 258 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+++|+.+|+++... ....++..+|.+|.. .+++++|+.+|+++.+. ....++..+|.+
T Consensus 167 ~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~ 228 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence 99999999998752 236788999999998 89999999999999864 235688999999
Q ss_pred HHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 334 YYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 334 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
|.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+|+++.+. +.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~-- 290 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG-----------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN-- 290 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC--
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC--
Confidence 997 899999999999998642 24688899999998 89999999999998753 11
Q ss_pred cHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVV-----GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEAR 477 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~ 477 (584)
..++..+|.+|... +++++|+.+|+++.+. . ...+++.+|.++...| ++++|+.+|++++
T Consensus 291 --~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 291 --SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp --HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 45777899999998 9999999999999873 1 2468899999999866 8999999999998
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hch
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGR 549 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 549 (584)
+. ....+++.||.+|.. .+++++|+.+|+++++. ....++.+||.+|.. .++
T Consensus 359 ~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 359 AK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCC
Confidence 75 346799999999999 89999999999999884 236789999999999 899
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007930 550 ARNRKGKSLENLLDSNA 566 (584)
Q Consensus 550 ~~~A~~~~l~~~~~~~~ 566 (584)
+++|. ..++.+++.++
T Consensus 419 ~~~A~-~~~~~A~~~~~ 434 (490)
T 2xm6_A 419 YVQAW-AWFDTASTNDM 434 (490)
T ss_dssp HHHHH-HHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHCCC
Confidence 99999 88888888773
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-26 Score=217.71 Aligned_cols=353 Identities=13% Similarity=0.080 Sum_probs=278.8
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HHHHHHhcCChhhHH-----------H
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHM-LAAIYCSLGRFEEAV-----------P 136 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~-----------~ 136 (584)
+.+...+......+..++ +++|....+++.+.+..+. .+++....+.. ........++++.+. .
T Consensus 10 ~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQME---EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 456677788888889999 9999999999988776543 22333322222 223333445555555 5
Q ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCH
Q 007930 137 VLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQF 216 (584)
Q Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 216 (584)
.+++.-.... ..........++..|.++...|++++|+.+|++++.+.... ++.+..+.++..+|.++...|++
T Consensus 86 ~~~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 86 LLLEIDKKQA----RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCC----CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 5555332211 11222222346679999999999999999999999886553 34556889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 007930 217 DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296 (584)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 296 (584)
++|+.++++++++.+...+ .....+.++..+|.++...|++++|+.++++++.+....++.+..+.++.++|.+|..+|
T Consensus 160 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999988763 256778899999999999999999999999999999999888999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
++++|+.++++++++.+... +.+....++.++|.++...|++++|+.++++++.+.... .+ +.....+..+|.+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GD-VIYLSEFEFLKSL 312 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CC-HHHHHHHHHHHHH
Confidence 99999999999999987764 227789999999999999999999999999999998663 22 2333347789999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+...|++ ..+++++...... +..+....++..+|.+|...|++++|..++++++.+.+.+..
T Consensus 313 ~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 313 YLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999995 4455555555555 556666788889999999999999999999999998776644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-26 Score=215.38 Aligned_cols=349 Identities=11% Similarity=-0.008 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHH--HHHHHhcCChHHHH-----------HHH
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQL--GDTCSSMGLLDRSV-----------WCY 181 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~~~ 181 (584)
.....+-...+...+++++|...++++.+............. ++.+ .......++++.+. ..+
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~----y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHL----YYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHH----HHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHH----HHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 334444456677899999999999999877655432222221 2221 22223334444444 444
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHH
Q 007930 182 ESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESA 261 (584)
Q Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A 261 (584)
++.-...... +.......++.+|.++...|++++|+.++++++++..... +....+.++..+|.+|...|++++|
T Consensus 88 ~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 88 LEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4432221110 0011223556699999999999999999999999877655 4566788999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH
Q 007930 262 LEHLVLASMVMIANGQ-ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 262 ~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 340 (584)
+.++.+++.+....++ .+..+.++.++|.++...|++++|+.++++++++.++.. +.+..+.++.++|.+|..+|++
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCH
Confidence 9999999999998877 778899999999999999999999999999999988763 4567788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
++|+.++++++++.+.. .+.+....++.++|.++...|++++|+.++++++.+.+.. ++...... +..+|.++..
T Consensus 241 ~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~-~~~l~~~~~~ 315 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEES---NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSE-FEFLKSLYLS 315 (383)
T ss_dssp HHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHhC
Confidence 99999999999998763 2335668999999999999999999999999999998876 33333333 5679999999
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.|++ ..+++++..++... ..+....++..+|.+|...|++++|..++++++++.+++..
T Consensus 316 ~~~~----~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 316 GPDE----EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp SCCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred CCcH----HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9995 44555555555442 34556788999999999999999999999999999766544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=234.51 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=248.3
Q ss_pred HHHhcCChHHHHH-HHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007930 167 TCSSMGLLDRSVW-CYESGLEIQIEALGDSDPR-VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAAD 244 (584)
Q Consensus 167 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 244 (584)
++...|+|++|+. .|++++.+. +++|. ....++.+|.++...|++++|+..++++++..+.. ..+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH--------MEA 100 (368)
T ss_dssp ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--------HHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHH
Confidence 5667799999999 999888662 22222 35678899999999999999999999999864432 356
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
+..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+..+++++... |...
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~ 166 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--------PAYA 166 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTG
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcH
Confidence 899999999999999999999999875 45567789999999999999999999999999862 2222
Q ss_pred HHH----------------HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 325 SIF----------------IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 325 ~~~----------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
..+ ..++.++ ..|++++|+.++++++...... ....++..+|.++...|++++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-------IDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-------CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-------ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 222 2466666 8999999999999999985331 036788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++
T Consensus 239 ~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 239 CFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 999999986554 568889999999999999999999999986 23346889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 469 ATELFEEARGVLEQECGS---CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
|+.+|++++.+.....++ .++....++..+|.++..+|++++|..+++++++.+.+.++.
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 999999999985433111 123447899999999999999999999999999998877664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=229.07 Aligned_cols=313 Identities=15% Similarity=0.109 Sum_probs=243.4
Q ss_pred HHHHhCCHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 209 AHIQAMQFDEAEN-LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 209 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
++...|++++|+. .+++++.+.+.... ..+..++.+|.++...|++++|+..+++++.. .|....++..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPL----RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY 103 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTT----TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcc----cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 5667799999999 99988876544321 11234789999999999999999999999873 5667788999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC-----
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA----- 362 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 362 (584)
+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...........
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999998 6778889999999999999999999999999987543210000
Q ss_pred --hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 363 --PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 363 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
.......+..++.++ ..|++++|+.++++++...+... ...++..+|.++...|++++|+.+|++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 246 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--- 246 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 000011222566666 89999999999999999866521 2577889999999999999999999999986
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.+....++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.
T Consensus 247 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 247 -----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334678999999999999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHhC---CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 521 VREEKLG---TANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 521 ~~~~~~~---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+.....+ ..++....++..++.++..+|++++|. ...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 357 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDL 357 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHH
Confidence 8543311 122344889999999999999999998 4444333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=222.92 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=255.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
+..+|..+...|++++|+..+++++.. +|....++..++.++...|++++|+..++++++..+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 90 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP------ 90 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH------
Confidence 778899999999999999999999987 677778888899999999999999999999998755433
Q ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 241 EAADRRLMALVYEAKA-DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
.++..+|.++...| ++++|+.++++++.. .+....++..+|.++...|++++|+..++++++.
T Consensus 91 --~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 154 (330)
T 3hym_B 91 --VSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------- 154 (330)
T ss_dssp --HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 45899999999999 999999999998763 5556678999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.++++++...+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE---------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 5666677888999999999999999999999987532 3678999999999999999999999999999876
Q ss_pred CCCCc--ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 400 TPGYH--STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 400 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
..... +....++..+|.++...|++++|+.++++++++. +....++..+|.++...|++++|+.+|++++
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 53321 3335678899999999999999999999999862 2335789999999999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHH-HHcCChH
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATY-DALGRVE 509 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 509 (584)
++ .|+...++..++.++ ...|+.+
T Consensus 298 ~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 298 GL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred cc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 98 888889999999998 4555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=216.13 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++++ .|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 45889999999999999999999999875 5566889999999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA-PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
...++..+|.++...|++++|+.++++++++.+....... .......+..+|.++...|++++|+.++++++...+...
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 8899999999999999999999999999997543100000 001234455679999999999999999999999865521
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
...++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++++++
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 1567889999999999999999999999986 2334678999999999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHHHHhchHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD----IDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|....++..+|.+|...|++++|+.+|++++++.....++.++. ...++..++.++..+|+.+.+.
T Consensus 277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 888899999999999999999999999999999976554433322 3678999999999999999887
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-24 Score=204.98 Aligned_cols=347 Identities=14% Similarity=0.087 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--HHHHhcCChhhHH---------HHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLA--AIYCSLGRFEEAV---------PVLE 139 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~---------~~~~ 139 (584)
+..++..-...+..++ +++|....+++...+..+.. +.... .++.+- ......+.+..+. ..++
T Consensus 12 v~~~l~~wy~~i~~~~-~~~A~~l~~~i~~~~~~~~~---~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 12 VGVKINEWYKMIRQFS-VPDAEILKAEVEQDIQQMEE---DQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHGGGBCC---CHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhcc---cHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 3334444444567888 99999999998887665531 22222 222222 2222234444443 4444
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (584)
+.- ......+.......++..|..+...|++++|+..|++++.+.... .+.+..+.++..+|.++...|++++|
T Consensus 87 ~i~----~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 87 TIE----TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp HHH----GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHh----ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 322 111122222333457889999999999999999999999886553 34567889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
+.++++++++.+...+ .....+.++..+|.++...|++++|++++++++.+....++....+.++.++|.+|...|+++
T Consensus 161 ~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 161 MYHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999987653 234678899999999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+|+.++++++++.+... ++....++..+|.++...|++++|+.++++++++.... + + +.....+..++.++..
T Consensus 240 ~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~-~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--S-H-KFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--C-C-SCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--C-C-HHHHHHHHHHHHHHhC
Confidence 99999999999987764 56669999999999999999999999999999997663 1 1 2233456788888888
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
.++. ..+.+++...... +..+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus 313 ~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 313 TVDE----RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp SCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcH----HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 8883 3334444444443 4455567788899999999999999999999999976553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=215.79 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....++.+|..+...|++++|+.+|++++... +... .++..+|.++...|++++|+..|++++++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDA----EAWQFLGITQAENENEQAAIVALQRCLEL------ 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 34567899999999999999999999999875 2232 45899999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL--EEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
+|....++..+|.++...|++++|+..+++++++.+........ ..+..+..+|.++...|++++|+.++++++..
T Consensus 129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999998876643111 12344567799999999999999999999875
Q ss_pred HHHcCCcch--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 272 MIANGQENE--VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 272 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.+. ...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+|++
T Consensus 207 ------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 207 ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp ------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333 5678899999999999999999999999998 677888999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----cccHHHHHHHHHHHHHHhccH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----HSTIAGIEAQMGVMLYVVGRY 424 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 424 (584)
++++.. ....++..+|.++...|++++|+.+|++++++.++..+. ......++..++.++...|+.
T Consensus 273 al~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 273 ALEIQP---------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHCT---------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHhcCC---------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999853 236789999999999999999999999999999886442 112356788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLR 439 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~ 439 (584)
+.+.....+.+..++
T Consensus 344 ~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 344 ELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHTTCCGGGT
T ss_pred HHHHHHHHhhHHHHH
Confidence 999888877665443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-24 Score=204.75 Aligned_cols=339 Identities=13% Similarity=0.100 Sum_probs=256.9
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HHHhCCHHHHH---------HHHHHHHHHHHHhCCC
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA--HIQAMQFDEAE---------NLCKKILEIHREHGHS 236 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~~ 236 (584)
+...+++++|...++++....... ..+.... .++.+-.. ....+.+..+. ..+++.-......
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--- 95 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--- 95 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---
Confidence 477899999999999886654332 1233332 33333221 12222322222 3333321111111
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
+.......++..|..+...|++++|+.++++++.+....++.+..+.++..+|.+|...|++++|+.+++++++++....
T Consensus 96 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 12233446788999999999999999999999998888888889999999999999999999999999999999987653
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+. .+..+.++.++|.++...|++++|+.++++++++.++ ..+....+.++.++|.+|..+|++++|+.++++++.+
T Consensus 176 ~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 176 LY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Cc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21 3467889999999999999999999999999999876 3455677889999999999999999999999999998
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.... +.+ ....++..+|.++...|++++|+.++++++.+....++. .....+..++.++...++. ..+.++
T Consensus 252 ~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~ly~~~~~~----~~~~~a 322 (378)
T 3q15_A 252 SREK-VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK---FYKELFLFLQAVYKETVDE----RKIHDL 322 (378)
T ss_dssp HHHH-CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS---CHHHHHHHHHHHHSSSCCH----HHHHHH
T ss_pred HHhh-CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcH----HHHHHH
Confidence 8765 333 337889999999999999999999999999987665432 2344567888888888883 333344
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+..+++.. ..+.....+..+|.+|...|++++|..+|++++++.+++..
T Consensus 323 l~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 323 LSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44433322 25567788899999999999999999999999999776544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=198.09 Aligned_cols=285 Identities=18% Similarity=0.167 Sum_probs=231.9
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007930 60 IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLE 139 (584)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 139 (584)
....+.++|..+..+..+|..++..|+ +++|+.++++++++.+... +...+....++..+|.++...|++++|+.+++
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566889999999999999999999 9999999999999988775 23457788999999999999999999999999
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (584)
+++.+.....+.+.+.. ..++..+|.++...|++++|+.++++++++.....+.+++....++..+|.++...|++++|
T Consensus 94 ~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876544443332 36799999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---C------cchHHHHHHHHHH
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG---Q------ENEVAAIDVSIGN 290 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~------~~~~~~~~~~la~ 290 (584)
+.++++++++.......+.+....++..+|.++...|++++|+.++++++....... . .......+..++.
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence 999999999988876666788888999999999999999999999999988754321 1 1123344455566
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.+...+.+.++...+.++... .+....++..+|.+|...|++++|+.++++++++.+
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 666777788888888877765 688899999999999999999999999999999864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=204.91 Aligned_cols=269 Identities=16% Similarity=0.089 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..++.+|..+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+++++++. .|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence 44789999999999999999999998874 4556778899999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH-------------H-HH-HHHHhcCHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE-------------I-SA-IYEALNEHEEAL 387 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~ 387 (584)
...++..+|.++...|++++|+.++++++...... ...+.. + +. ++...|++++|+
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 78899999999999999999999999999875432 112222 2 44 588899999999
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHH
Q 007930 388 KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
.+++++++..+.. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999886554 577889999999999999999999999986 2334678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh------------HHH
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD------------IDD 535 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~------------~~~ 535 (584)
+|+.+++++++. .|....++..+|.++...|++++|+.++++++.+ +|. ...
T Consensus 224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--------QVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccccccccchhhcCHH
Confidence 999999999998 7888899999999999999999999999999998 455 789
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++..++.++..+|++++|. ..++.++...+
T Consensus 288 ~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~ 317 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVE-LTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHTTCCSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHHhcc
Confidence 9999999999999999999 66665555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-24 Score=196.96 Aligned_cols=280 Identities=20% Similarity=0.176 Sum_probs=230.4
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+.++|....++..+|.++...|++++|+.++++++++.....+...+..+.++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999888776667888899999999999999999999999999998
Q ss_pred HHHc--CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 272 MIAN--GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 272 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.... ++.+....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8776 67788899999999999999999999999999999998887777888999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC----C----CcccHHHHHHHHHHHHHHh
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP----G----YHSTIAGIEAQMGVMLYVV 421 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~----~~~~~~~~~~~l~~~~~~~ 421 (584)
++.+..... +.+.+....++..+|.++...|++++|+.+++++++..+... . ........+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999977642 455677889999999999999999999999999998865420 0 1111233344455556666
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
+.+.+|...+.++.. ..+....++..+|.++...|++++|+.+|++++++.
T Consensus 258 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 258 TSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777777777777766 356678899999999999999999999999999983
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=205.69 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.....++.+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..+++++..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 84 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER--------EEAWRSLGLTQAENEKDGLAIIALNHARML------ 84 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 345678899999999999999999999999875432 356889999999999999999999999875
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH--------------HH-HHHHcccHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL--------------AD-LYYRIGKLRE 342 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~ 342 (584)
.+....++..+|.++...|++++|+..++++++. .|.....+..+ +. ++...|++++
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--------QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------STTTTTC--------------------CCTTSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 4555778999999999999999999999999886 23333333333 55 5888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
|+.+++++++.... ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|
T Consensus 157 A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 157 CRTLLHAALEMNPN---------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcC
Confidence 99999999988532 36789999999999999999999999999886544 567889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc------------
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD------------ 490 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------ 490 (584)
++++|+.+++++++. .+....++..+|.++...|++++|+.++++++.+ .|.
T Consensus 221 ~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 221 RPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--------QVGGTTPTGEASREA 284 (327)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HTTSCC-----CCTH
T ss_pred CHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccccccccchhhc
Confidence 999999999999985 2334678999999999999999999999999998 444
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..+|.++..+|++++|...++++++.+...++.
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 78899999999999999999999999999987776553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-23 Score=194.11 Aligned_cols=312 Identities=17% Similarity=0.094 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
...++..+|.++...|++++|+..+++++...+.. +....+.++..+|.++...|++++|+..+++++.+....++.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45677888999999999999999999999865321 233456678999999999999999999999999998888877
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
.....++..+|.++...|++++|+.++++++.+.....+..++....++.++|.++...|++++|..++++++.+....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY- 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-
Confidence 7778889999999999999999999999999998877654456788899999999999999999999999999997653
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+ ++....++..+|.++...|++++|..++++++.+.+.. +.. .........++.++...|++++|..++++++..
T Consensus 169 -~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 169 -Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp -C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred -C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 1 22356788999999999999999999999999887654 222 111222224556688999999999999988752
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. ..........+..+|.++...|++++|...+++++........ .+....++..+|.++...|++++|...+++
T Consensus 245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 1111222346788999999999999999999999998766422 234456889999999999999999999999
Q ss_pred HHHHHHH
Q 007930 518 ILKVREE 524 (584)
Q Consensus 518 a~~~~~~ 524 (584)
++.+...
T Consensus 319 al~~~~~ 325 (373)
T 1hz4_A 319 ALKLANR 325 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=185.82 Aligned_cols=235 Identities=17% Similarity=0.144 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
..+..+..+|.++...|++++|+.+|+++++. . ....++..+|.++...|++++|+.++++++.+.+..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 71 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-- 71 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 34678899999999999999999999999998 3 556789999999999999999999999999998663
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
..+.+....++..+|.++...|++++|+.++++++.+.+. +.++...|++++|+..+++++.
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~--- 133 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAY--- 133 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHH---
Confidence 3345555889999999999999999999999999987432 4578888999999999999988
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
..+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35667889999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
++ +|+...++..+|.++..+|++++|. ..++.++...
T Consensus 201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~ 237 (258)
T 3uq3_A 201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 237 (258)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhC
Confidence 98 7888999999999999999999999 8899988877
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-22 Score=191.72 Aligned_cols=314 Identities=12% Similarity=0.005 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
....++..+|.++...|++++|+.++++++...+ ...+.....++..+|.++...|++++|+..+++++.+.+..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-
Confidence 3467788899999999999999999999998652 22233334568899999999999999999999999997763
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
.+......++..+|.++...|++++|+.++++++++.+......++..+.++..+|.++...|++++|..++++++...
T Consensus 87 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 87 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2223456678899999999999999999999999999887765456677889999999999999999999999999876
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHH--HHHHHHHHHHcccHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI--FIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
...+... ...++..+|.++...|++++|..++++++.+..... .+..... ...++.++...|++++|..+++++
T Consensus 166 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 166 SSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6554433 567889999999999999999999999998854421 1211122 224556688999999999999998
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+.... +.. ......+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...
T Consensus 242 ~~~~~----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 242 AKPEF----ANN-HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp CCCCC----TTC-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCC----Ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 75431 111 1223357889999999999999999999999998875 44445556888999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 007930 431 FESAVVKLRASG 442 (584)
Q Consensus 431 ~~~a~~~~~~~~ 442 (584)
+++++.+....+
T Consensus 316 l~~al~~~~~~g 327 (373)
T 1hz4_A 316 LLDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHhcccc
Confidence 999999876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-22 Score=198.53 Aligned_cols=429 Identities=12% Similarity=-0.003 Sum_probs=304.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..++.. ...|+ +++|...|++++.. .|.....+..++..+...|++++|+..|++++...
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~---------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQ---------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 467888888888884 67888 99999999999985 45567788899999999999999999999999764
Q ss_pred HhccCCchhhhHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---------hCC
Q 007930 146 DIGKGSDRALAKFSGYMQLGD-TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ---------AMQ 215 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~ 215 (584)
+ +. ..+..++. .....|++++|.+.+.++.+......|. ++....+|...+..... .|+
T Consensus 77 -----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 77 -----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM-EIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp -----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred -----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 2 11 22555553 4456788888877443333333222332 33445666666666554 789
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHHHHHcCC-----
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALV-------------YEAKADYESALEHLVLASMVMIANGQ----- 277 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~-------------~~~~g~~~~A~~~~~~a~~~~~~~~~----- 277 (584)
+++|..+|+++++. |.. . ....+...... ....+++..|...+............
T Consensus 146 ~~~a~~~y~~al~~-P~~----~--~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN-PMI----N--IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp HHHHHHHHHHHTTS-CCT----T--HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHHHHHHHhc-hhh----h--HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99999999999972 211 1 11122222111 12346677777776654333222221
Q ss_pred cch-------HHHHHHHHHHHHHHc----CCh----hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH------
Q 007930 278 ENE-------VAAIDVSIGNIYMSL----CRF----DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR------ 336 (584)
Q Consensus 278 ~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------ 336 (584)
.+. ....+.......... ++. .+++..|++++.. .|....++..+|.++..
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhh
Confidence 111 123333332222221 232 3778899999987 57888999999999986
Q ss_pred -cccHH-------HHHHHHHHHHH-HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH
Q 007930 337 -IGKLR-------ESKSYCENALR-VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407 (584)
Q Consensus 337 -~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 407 (584)
.|+++ +|+..|++++. +. |.....+..++.++...|++++|...|++++++.+.. .
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~---------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~ 355 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLL---------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID------P 355 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC------H
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC------c
Confidence 79987 89999999886 43 2346789999999999999999999999999863321 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA-CLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
..++..++.++...|++++|...|+++++. ++.....+...+.+ +...|++++|..+|+++++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------- 420 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------- 420 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-------
Confidence 347888999999999999999999999873 12122344444444 34689999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.|+...++..++.++...|+.++|..+|++++.. .+.+|+ ....+..........|+.+.+. ...+.++...
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~~~~~ 493 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAF 493 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence 6777889999999999999999999999999985 223453 3457777788888999999998 7777777776
Q ss_pred hhh
Q 007930 566 AYR 568 (584)
Q Consensus 566 ~~~ 568 (584)
|+.
T Consensus 494 p~~ 496 (530)
T 2ooe_A 494 REE 496 (530)
T ss_dssp HHH
T ss_pred chh
Confidence 643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=198.66 Aligned_cols=255 Identities=9% Similarity=-0.021 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhh
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-FDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 316 (584)
.+....++..+|.++...|++++|+..+++++.+ .|....++.++|.++..+|+ +++|+..|++++.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----
Confidence 3445567899999999999999999999999986 77888999999999999997 99999999999998
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
.|....+++++|.++..+|++++|+.+|++++++..+ ...+|.++|.++...|++++|+.+|++++++
T Consensus 162 ---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 162 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999998633 4689999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHH-hccHHHH-----HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC--CHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYV-VGRYGEA-----RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY--RINE 468 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~ 468 (584)
.+.. ..+++++|.++.. .|.+++| +.+|++++.+ .|....+|+++|.++...| ++++
T Consensus 230 ~P~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 230 DVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp CTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred CCCC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHH
Confidence 8776 7788999999999 5555888 5889999986 3445689999999999988 6899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHHHHhCCCChhHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG--------R-VEDAIEILEYI-LKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~p~~~~~~~ 538 (584)
|++.++++ +. .|+...++..+|.+|..+| + +++|+.+|+++ +++ +|.....|.
T Consensus 295 a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~ 357 (382)
T 2h6f_A 295 LLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR 357 (382)
T ss_dssp HHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred HHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence 98888776 43 7788899999999999985 2 58899999888 776 899999999
Q ss_pred HHHHHHHHh
Q 007930 539 RLAELLKET 547 (584)
Q Consensus 539 ~l~~~~~~~ 547 (584)
.++..+..+
T Consensus 358 ~~~~~l~~~ 366 (382)
T 2h6f_A 358 YIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-23 Score=184.73 Aligned_cols=254 Identities=14% Similarity=0.134 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+..+..+|.++...|++++|+.++++++... ....++..+|.++...|++++|+.++++++++..... ++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~ 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-AD 74 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cc
Confidence 346679999999999999999999999998762 3356889999999999999999999999999865432 12
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....++..+|.++...|++++|+.++++++.+... +.++...|++++|+..+++++...+.
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------ADILTKLRNAEKELKKAEAEAYVNPE 137 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------hHHHHHHhHHHHHHHHHHHHHHcCcc
Confidence 2334789999999999999999999999999997422 35677889999999999999886554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 138 ~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 K-------AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp H-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 678889999999999999999999999986 2334678999999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
.|....++..+|.++...|++++|..+|++++++..+... .|....++..++.+
T Consensus 203 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 --------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 7888899999999999999999999999999999654432 37777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=196.78 Aligned_cols=245 Identities=9% Similarity=0.018 Sum_probs=217.9
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK-LRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 355 (584)
..+....++..+|.++...|++++|+..+++++.+ +|....+++++|.++..+|+ +++|+.+|++++.+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 36678889999999999999999999999999998 79999999999999999997 9999999999999863
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
+ ...+|+++|.++..+|++++|+..|++++++.+.. ..++.++|.++..+|++++|+.+|++++
T Consensus 164 ~---------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 164 K---------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp T---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3 47899999999999999999999999999998776 7889999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHh-hCCHHHH-----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--C
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQ-LYRINEA-----TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG--R 507 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 507 (584)
++ .+....+|+++|.++.. .|.+++| +.+|++++.+ +|+...++.++|.++...| +
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence 96 44567899999999999 5665888 5999999999 8999999999999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc--------h-HHHHHHHHHHHH-HhhhhhhhHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG--------R-ARNRKGKSLENL-LDSNAYRVKK 571 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~l~~~-~~~~~~~~~~ 571 (584)
+++|++.++++ +. +|+...++..+|.+|..+| + +++|+ ..++.+ ++.+|.+...
T Consensus 292 ~~~a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 292 YPNLLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTIRKEY 355 (382)
T ss_dssp CHHHHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGGGHHH
T ss_pred hHHHHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCchhHHH
Confidence 88998888765 43 7888999999999999985 3 58888 888888 8888876553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=191.73 Aligned_cols=263 Identities=13% Similarity=0.039 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
..+..+|.++...|++++|+..++++++..|.... ++..+|.++...|++++|+..+++++.. ..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence 46778999999999999999999999988765543 3899999999999999999999998762 233444
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------ 138 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------ 138 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------
Confidence 5778999999999999999999999999998 67778899999999999999999999999998773
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR---YGEARSSFESAVVK 437 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~ 437 (584)
+....++..+|......+++++|+.+++++++..+.. ...+..+|.++...|+ +++|+..+++++++
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 ---TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2336788999945555669999999999999987665 5678889999999999 99999999999998
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.....+........++..+|.++...|++++|+.+|++++++ +|+...++..++.+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence 755433212234578999999999999999999999999999 8888888888877765543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=188.06 Aligned_cols=269 Identities=16% Similarity=0.138 Sum_probs=223.0
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 247 (584)
....|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.++++++++.....+.+.+..+.++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45679999999999999999999988888999999999999999999999999999999999988765677888999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIAN--GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
+|.++...|++++|+.++.+++...... .+++....++.++|.++...|++++|+.++++++++.....+++.+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999987765 44678899999999999999999999999999999998888777888999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
++..+|.++...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999986542222233344556667777776655554443 35555555555545667
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
....++..+|.+|...|++++|+.++++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=191.09 Aligned_cols=251 Identities=15% Similarity=0.113 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++... .+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV------NA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc------Cc
Confidence 45678999999999999999999999987 56677789999999999999999999999999832 22
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
......++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+|++++..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 33346789999999999999999999999999987655 467889999999999999999999999884
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR---VEDAIEILEYIL 519 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~ 519 (584)
.+....++..+|......+++++|+.+|++++++ .|....++..+|.++...|+ +++|+..|++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 3445688999995555566999999999999998 78888999999999999999 999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++.....++..+....++..+|.++...|++++|. ..++.++..+|+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccHHHH
Confidence 98654332222335689999999999999999999 9999999988876553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=203.33 Aligned_cols=373 Identities=14% Similarity=0.107 Sum_probs=262.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHhccCC
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRF---EEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 151 (584)
..+|..++..|+ +++|+.+|+++.+. + ...+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL------G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH------T-----CCTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 467889999999 99999999999764 1 234667899999999999 9999999999854
Q ss_pred chhhhHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMG-----LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
++ .+++.+|.++...+ ++++|+.+|+++++. + + ..+++.||.+|...+...++...++..
T Consensus 68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g--~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----G--E---GNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----T--C---SSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 11 34788999777666 889999999999874 1 2 238889999999888776665555554
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---ChhHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC---RFDEAIF 303 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 303 (584)
....+... ..+++.+|.+|...+.++++............. .++. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443322 235889999999999766666553333222111 2222 8899999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-H-
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI----GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI-Y- 377 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 377 (584)
+|+++.+. .+..+..++++|.+|... +++++|+.+|+++. .. ...+++++|.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence 99999886 566777779999999765 79999999999987 22 25788999998 4
Q ss_pred -HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 378 -EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-----RYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 378 -~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
...+++++|+.+|+++.+. + ...+++++|.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 5688999999999998853 2 1567789999998 66 9999999999987 1 1 257
Q ss_pred HHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 007930 452 VLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 452 ~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 523 (584)
+++++|.+|.. ..++++|+.+|+++.+. ....+.++||.+|.. ..++.+|..+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 89999999887 34999999999999864 234688999999985 46899999999999874
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHh--chHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAELLKET--GRARNRK 554 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~ 554 (584)
.++ .+...++.+...+ ++..+|.
T Consensus 388 -----g~~---~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 388 -----DTP---EANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp -----CCH---HHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----CCH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 233 3445555554333 3444554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=179.77 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------ 70 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP------ 70 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 457789999999999999999999999987 789999999999999999999999999999999853
Q ss_pred ChHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEAL-----------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
....++..+|.++... |++++|+..+++++++.|+. ..++..+|.++...|++++|+..
T Consensus 71 ---~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 71 ---RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp ---TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence 3467899999999999 99999999999999997765 67888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
|++++++. ....++..+|.++...|++++|+..|++++++ +|+...++..+|.++...|++++
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence 99999972 23678999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007930 511 AIEILEYILK 520 (584)
Q Consensus 511 A~~~~~~a~~ 520 (584)
|+..|+++-.
T Consensus 204 A~~~~~~~~~ 213 (217)
T 2pl2_A 204 AARAAALEHH 213 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=178.97 Aligned_cols=199 Identities=20% Similarity=0.170 Sum_probs=168.6
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
|..+.++..+|.++...|++++|+..|+++++... ....++..+|.++...|++++|+..+++++++.|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34456889999999999999999999999998753 346889999999999999999999999999997766
Q ss_pred CCCcccHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVV-----------GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
..++..+|.++... |++++|+..|++++++ .|....++..+|.++...|++++|
T Consensus 73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence 67888999999999 9999999999999996 344568899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+..|++++++ . +...++..+|.++...|++++|+..|++++++ +|+...++.++|.++..+|+
T Consensus 138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence 9999999999 6 77889999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007930 550 ARNRKGKSLENL 561 (584)
Q Consensus 550 ~~~A~~~~l~~~ 561 (584)
+++|+ ..++.+
T Consensus 201 ~~~A~-~~~~~~ 211 (217)
T 2pl2_A 201 AEEAA-RAAALE 211 (217)
T ss_dssp ------------
T ss_pred HHHHH-HHHHHH
Confidence 99999 555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=181.38 Aligned_cols=268 Identities=19% Similarity=0.160 Sum_probs=219.6
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
....|++++|+.+|++++++.....+.+++.. ..++..+|.++...|++++|+.++++++.+.....+.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 45689999999999999999987765554433 36799999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc--CCcchHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN--GQENEVA 282 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~ 282 (584)
.+|.++...|++++|+.++++++.+.....+.+.+....++..+|.++...|++++|+.++++++...... ++.+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999999888776778889999999999999999999999999999987655 4477888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG-EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
.++..+|.++...|++++|+.++++++++...... ...+.....+..++..+...+....+.. +..+....... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ 246 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC--KV 246 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC--CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc--CC
Confidence 99999999999999999999999999998665432 2244555666777777766655554443 44455544442 45
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
.++....++..+|.++...|++++|+.++++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66788899999999999999999999999999864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=197.49 Aligned_cols=353 Identities=13% Similarity=0.050 Sum_probs=249.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHhCCCC
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL---DRSVWCYESGLEIQIEALGDSD 196 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~ 196 (584)
.+|..+...|++++|+.+|+++.+.. ++ .+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-------~~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------- 67 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-------YS----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-------CC----TGGGTCC----------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------
Confidence 57899999999999999999987641 12 2367899999999998 9999999999854
Q ss_pred hHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 197 PRVAETCRYLAEAHIQAM-----QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
...+++.+|.++...+ ++++|+.+|+++++. ... .+++.+|.+|...+..+++...++.....
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3467889999776666 889999999999873 122 14889999999888766554444433222
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc---cHHHHHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG---KLRESKSYCE 348 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 348 (584)
... ....+.+.+|.+|...+.++++............. .++. +++.+|.+|...| ++++|+.+|+
T Consensus 136 ~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 136 QAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp HHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 211 22457789999999999888877764443333211 1233 8899999999999 9999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH-H--HHh
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM-L--YVV 421 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~ 421 (584)
++.+.... .+..++++|.+|... +++++|+.+|+++. +.. ..+++++|.+ + ...
T Consensus 204 ~aa~~g~~---------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 204 AGVSRGTV---------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHTTCS---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGGG
T ss_pred HHHHCCCH---------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCCC
Confidence 99887422 245668899999765 79999999999987 443 4677899998 4 578
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-----RINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
+++++|+.+|+++.+. . ...+++++|.+|. .| ++++|+.+|+++. . ....+++
T Consensus 265 ~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~~ 322 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAADY 322 (452)
T ss_dssp CCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHHH
Confidence 9999999999999863 1 3578999999998 56 9999999999987 2 4457999
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhh
Q 007930 497 NLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 497 ~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+||.+|.. ..++++|..+|+++.+. ....+.++||.+|.. ..+..+|. ..++.+.+..+..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCCHH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCCHH
Confidence 99999987 44999999999999863 335678999999985 45888888 7777777655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-22 Score=178.43 Aligned_cols=280 Identities=13% Similarity=0.088 Sum_probs=221.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
...+..|+|..|+..+++.....|.. .......++.+|...|+++.|+..++. ..+....++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~ 70 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM 70 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence 34567899999999887765433322 123467789999999999999987653 24446778889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++..+...|++++|+..+++.+.. ...|....++..+|.++...|++++|+..+++ . ...
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~ 130 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL 130 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence 999999999999999999988763 01477888999999999999999999999987 1 125
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
.++..+|.++..+|++++|+..++++++..++. ........+..++...|++++|+..|+++++. .|
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CS 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CC
Confidence 688999999999999999999999999885432 11111111223344558999999999999985 23
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHh
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED-AIEILEYILKVREEKL 526 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~ 526 (584)
....+++++|.++...|++++|+..|+++++. +|+.+.++.++|.++...|++.+ +..++++++++
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~----- 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA----- 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 34689999999999999999999999999999 89999999999999999999976 57899999998
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+|+.+.+. .+..+.+.++++..+
T Consensus 265 ---~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 265 ---HRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp ---CTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred ---CCCChHHH----HHHHHHHHHHHHHHH
Confidence 67665543 456777778877643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-20 Score=186.54 Aligned_cols=387 Identities=12% Similarity=0.006 Sum_probs=272.2
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|....++..++.. ...|++++|...|+++++.. +... ..|..++..+...|++++|...|++++..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 45556777788874 77999999999999999765 2232 44888999999999999999999999988
Q ss_pred HhCCCChHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---------hc
Q 007930 191 ALGDSDPRVAETCRYLAE-AHIQAMQFDEAEN----LCKKILEIHREHGHSASLEEAADRRLMALVYEA---------KA 256 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~---------~g 256 (584)
.|. ...|..++. .....|++++|.+ .|++++...... +....+|...+..... .|
T Consensus 76 -----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 76 -----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME-----IMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp -----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS-----TTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred -----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC-----cccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 553 446666664 4456688887776 566665543211 1123456666666554 78
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-------------HHcCChhHHHHHHHHHHHHHHHhhcC---Cc
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-------------MSLCRFDEAIFSYQKGLTVFKATRGE---DH 320 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~ 320 (584)
++++|...|++++.. +. ......+....... ...+++.+|...+.+........... -.
T Consensus 145 ~~~~a~~~y~~al~~----P~-~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 145 RITAVRRVYQRGCVN----PM-INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHHTTS----CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHHHHHHHHHHHHhc----hh-hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 999999999998762 11 11222222222211 13455667766665533332222100 01
Q ss_pred cc-------HHHHHHHHHHHHHHc----ccH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH------
Q 007930 321 LS-------VASIFIRLADLYYRI----GKL----RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA------ 379 (584)
Q Consensus 321 ~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------ 379 (584)
|. ....+.......... ++. ..++..|++++..... ...+|..+|.++..
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~---------~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhchhhh
Confidence 11 123333333222211 222 4788899999998633 36889999999886
Q ss_pred -hcCHH-------HHHHHHHHHHH-HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 380 -LNEHE-------EALKLLQKAMK-LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 380 -~g~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
.|+++ +|+..|+++++ +.++. ..++..++.++...|++++|...|++++++ .+....
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~ 356 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPT 356 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------SSSCHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-------cccCch
Confidence 79987 88999999886 44433 678889999999999999999999999984 122224
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT-YDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
.+|..++.++...|++++|...|+++++. .|.....+...+.+ +...|++++|...|+++++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-------- 420 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-------- 420 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--------
Confidence 68999999999999999999999999986 44444555555554 44699999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+...++..++.++...|+.++|. ..++.++...|
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~ 456 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGS 456 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccC
Confidence 6788899999999999999999999 88888887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=175.92 Aligned_cols=264 Identities=15% Similarity=0.075 Sum_probs=212.3
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEV-AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
...+..|+|..|+..+++... ..|.. ......++.+|..+|++++|+..++.. .+....++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~ 69 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR 69 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence 345678999999998875322 23333 456788899999999999999766441 345678889
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
.++..+...|++++|++.+++.+.... .|....++..+|.++...|++++|+..+++ +. ..
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~-------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-------~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSV-------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-------SL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-------SH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-------CH
Confidence 999999999999999999999876420 123356789999999999999999999987 21 14
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++..+|++++|+..+++++... + .. ........+..++...|++++|+..|+++++. .
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~ 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD----E-DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----c-Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence 677889999999999999999999999861 1 11 11111112223344569999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
|....++..+|.++..+|++++|+..|++++.+ +|+++.++.++|.++..+|+..++...+++.++..+|+.
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 888899999999999999999999999999998 899999999999999999999887658999999888887
Q ss_pred hHH
Q 007930 569 VKK 571 (584)
Q Consensus 569 ~~~ 571 (584)
+..
T Consensus 269 ~~~ 271 (291)
T 3mkr_A 269 PFI 271 (291)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-21 Score=174.65 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=196.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
++++|+..|.++ |.+|...|++++|+.+|++++++..+.. +.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 588898888875 5577889999999999999999987764 345568899999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
+|++++|+.++++++.+... ..+....+.++.++|.+|... |++++|+.+|++++++.+.. +.......++.++|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 99999999999999999876 334556678999999999996 99999999999999999876 44445567889999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
.++..+|++++|+.+|++++.+...... .......++.++|.++..+|++++|+.+|++++++...... ......+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHH
Confidence 9999999999999999999986332211 01123457899999999999999999999999987322111 1112345
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 496 SNLAATYD--ALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 496 ~~la~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
..++..+. ..+++++|+..|++++.+ +|.....+..+-...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 56666664 456788888888888776 788777766665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=174.75 Aligned_cols=250 Identities=13% Similarity=0.084 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
++++|+..|+++ |.+|...|++++|+..|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 488888887776 4467788999999999999999998888888889999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 007930 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373 (584)
Q Consensus 295 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 373 (584)
+|++++|+.+|++++++..... +....+.++.++|.+|... |++++|+.+|++++++.+. ..+......++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHH
Confidence 9999999999999999987654 2344578899999999996 9999999999999999865 22344556789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVL 453 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (584)
|.++..+|++++|+.+|++++.+.+...........++.++|.++..+|++++|+.+|++++.+....... .....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---RESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---HHHHHH
Confidence 99999999999999999999998766533333456678899999999999999999999999865443221 123455
Q ss_pred HHHHHHHH--hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 454 NQMGLACL--QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 454 ~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
..++..+. ..+++++|+..|++++.+ +|....++..+-...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66676665 457899999999888776 666655555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-20 Score=165.46 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhhc
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS----LCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
+.+++.+|.++...|++++|+.+|++++. +....++..+|.++.. .+++++|+.+|+++++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------
Confidence 45689999999999999999999999876 2334678999999999 99999999999999876
Q ss_pred CCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA----LNEHEEALKL 389 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 389 (584)
....++..+|.++.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+
T Consensus 72 ----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 72 ----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 156789999999999 999999999999998762 25789999999999 9999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh---
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--- 462 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 462 (584)
|+++++.. . ..++..+|.++.. .+++++|+.+|+++++. . ...++..+|.++..
T Consensus 137 ~~~a~~~~--~-------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 137 FTKACDLN--D-------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHTT--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTCS
T ss_pred HHHHHhcC--c-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCC
Confidence 99999752 1 4577899999999 99999999999999874 1 24788999999999
Q ss_pred -hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 463 -LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 463 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
.+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|++++++
T Consensus 198 ~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 198 ATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999999986 33 5789999999999 99999999999999998
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=171.77 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
...+..+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.....
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-- 89 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--
Confidence 345667888999999999999999999999875 5677889999999999999999999999999987532
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
...++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++..
T Consensus 90 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 154 (243)
T 2q7f_A 90 -------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL- 154 (243)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred -------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 36788899999999999999999999999876544 567788999999999999999999999885
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..+++++
T Consensus 155 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 155 -------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2233578899999999999999999999999998 7777889999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 519 LKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+++ +|+...++..++.+....|
T Consensus 220 ~~~--------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 IDI--------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHH--------CTTCHHHHHHHTC------
T ss_pred Hcc--------CcchHHHHHHHHHHHhhcc
Confidence 998 7888888888877765544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-20 Score=164.86 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHh
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCA 355 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 355 (584)
..+.++..+|.++...|++++|+.+|+++++. ....++..+|.++.. .+++++|+.+|+++++..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34567899999999999999999999999872 234688999999999 999999999999998762
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEA 427 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 427 (584)
...++..+|.++.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHH
Confidence 25789999999999 999999999999998751 15678899999999 9999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
+.+|+++++. . ...++..+|.++.. .+++++|+.+|+++++. ....++..+|.+|.
T Consensus 134 ~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH
Confidence 9999999984 1 24688999999998 99999999999999975 23578999999999
Q ss_pred H----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 504 A----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 504 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
. .+++++|+.+|+++++. .| ..++..+|.+|.. .+++++|. .+++.+++.+|+.....+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999986 33 6789999999999 99999999 999999988887665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-19 Score=180.57 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH-------------------------HHHHHHhcC
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHM-------------------------LAAIYCSLG 129 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------------l~~~~~~~g 129 (584)
-..++.+...|. +.+|++.+++++-- .+.. ..+++.... .. +|.++...|
T Consensus 989 s~~vKaf~~agl-p~EaieLLEKivl~-~s~f--s~n~~Lqnl-Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 989 SVTVKAFMTADL-PNELIELLEKIVLD-NSVF--SEHRNLQNL-LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHcC-CCcc--cccHHHHHH-HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 345567778898 99999999999821 1101 011121111 11 245555555
Q ss_pred ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 007930 130 RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA 209 (584)
Q Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 209 (584)
.+++|..+|+++-.. ...+...+...+++++|+++++++ ....+|..+|.+
T Consensus 1064 lyEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKA 1114 (1630)
T ss_pred CHHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHH
Confidence 555555555553100 001111122444444444444322 124556666666
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
+...|++++|+..|.++ .+ ...+..+|.++...|++++|+++|..+..... . ..+...+|
T Consensus 1115 ql~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~----e---~~Idt~La 1174 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKAR----E---SYVETELI 1174 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----c---ccccHHHH
Confidence 66666666666666554 10 12355666666666666666666666544311 0 01112356
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.+|.+++++++ ++.|. . .+.. ..+..+|..+...|+|++|..+|.++ ..
T Consensus 1175 faYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~n 1223 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SN 1223 (1630)
T ss_pred HHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hH
Confidence 66666666553 22221 1 1222 23445777777777777777776663 24
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
|..++.++..+|++++|++.++++.. ..+|...+.++...|+|..|..+....+. .
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~Iiv------------~ 1279 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLHIVV------------H 1279 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHhhhc------------C
Confidence 55666667777777777777766622 24555666666677777776666553211 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHhC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+..+..++..|...|.+++|+.++++++.+ ++.....+..||.+|.+ -++..+++++|...+.+
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini------ 1345 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI------ 1345 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc------
Confidence 345668888899999999999999999988 66777788788887765 45667777777777665
Q ss_pred CCCh-----hHHHHHHHHHHHHHHhchHHHHH
Q 007930 528 TANP-----DIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 528 ~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.+ +.+..|..+..+|.+-|+++.|.
T Consensus 1346 --~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1346 --PKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred --chHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34 56778999999999999999998
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=157.96 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+.+|.++|.++..+|++++|+.+|++++++.|+. ..++..+|.++...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 36789999999999999999999999999997765 678899999999999999999999999885
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+....++..+|.++...++++.|...+.+++.+ .|....++..+|.++..+|++++|+..|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---- 136 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---- 136 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh----
Confidence 3344678999999999999999999999999998 8888899999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
+|....++.++|.++..+|++++|+ ..++.+++.+|+..
T Consensus 137 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~a 175 (184)
T 3vtx_A 137 ----KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEKKA 175 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHHHH
T ss_pred ----cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCccCH
Confidence 8999999999999999999999999 99999999888653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=169.73 Aligned_cols=255 Identities=11% Similarity=-0.034 Sum_probs=204.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 249 ALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
+......|++++|+..+++++.. ...+.+....++..+|.++...|++++|+.+|+++++. .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 33444568999999999988763 11234678899999999999999999999999999998 677888999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
.+|.++...|++++|+.++++++.+... ...++..+|.++...|++++|+.++++++++.+.. .
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPT---------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCcc---------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence 9999999999999999999999998533 25789999999999999999999999999876554 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.... ...++...|++++|+..+++++.... .. .....++.++...++.++|+..+++++...... .
T Consensus 146 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 FRSL-WLYLAEQKLDEKQAKEVLKQHFEKSD----KE-----QWGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHSC----CC-----STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC----cc-----hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 2222 23344677999999999999887521 11 122347778888899999999999988763322 2
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+....++..+|.++...|++++|+.+|++++.+ +|.... ..+.++..+|++++|+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH
Confidence 344689999999999999999999999999987 565433 3477889999999998
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=161.36 Aligned_cols=213 Identities=14% Similarity=0.054 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++.....
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--- 103 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--- 103 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---
Confidence 34888999999999999999999999999987 5777889999999999999999999999999988532
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
...++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.++++++..
T Consensus 104 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 170 (252)
T 2ho1_A 104 ------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-- 170 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 357889999999999999999999999887 1234445678889999999999999999999999985
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+....++..+|.++...|++++|+.+++++++. .|....++..++.++...|++++|..++++++
T Consensus 171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233678899999999999999999999999887 67778899999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHH
Q 007930 520 KVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~ 538 (584)
++ .|+......
T Consensus 237 ~~--------~p~~~~~~~ 247 (252)
T 2ho1_A 237 RL--------YPGSLEYQE 247 (252)
T ss_dssp HH--------CTTSHHHHH
T ss_pred HH--------CCCCHHHHH
Confidence 97 566555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-20 Score=155.30 Aligned_cols=172 Identities=14% Similarity=0.246 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
.+.+|+++|.++..+|++++|+.+|++++++.+ ....++..+|.++...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence 467899999999999999999999999999853 346789999999999999999999999998876554
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..++..+|.++...++++.|...+.+++.+ .+....++..+|.++...|++++|+..|++++++
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 73 -----AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 667788999999999999999999999985 3344678999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID 534 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~ 534 (584)
+|....++..+|.+|..+|++++|+.+|++++++ +|+.+
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~a 175 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--------EEKKA 175 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------THHHH
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------CccCH
Confidence 8899999999999999999999999999999998 78764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=166.14 Aligned_cols=248 Identities=12% Similarity=0.062 Sum_probs=199.9
Q ss_pred hcCChHHHHHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIE-AL--GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRR 246 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 246 (584)
..|++++|..+++++.+.... .+ +.+.......+...|.+|...|++++|+..|.+++++.+... +....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 356788888888888776542 12 223344456677778899999999999999999999998876 4566788899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 247 LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
.+|.+|..+|++++|+.+|++++.+....++....+.++.++|.+|.. |++++|+.+|++++++..... +......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHH
Confidence 999999999999999999999999998888888888999999999999 999999999999999987643 23445789
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
+.++|.++..+|++++|+.+|++++.+.... .........+..+|.++...|++++|+.+|++++ +.+.... ..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~--~~ 231 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM---ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG--SE 231 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT--SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC--CH
Confidence 9999999999999999999999999998763 2345566789999999999999999999999999 7655432 22
Q ss_pred HHHHHHHHHHHHHHhccHHHHHH
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
....+..++..+ ..|+.+....
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 334455566655 5666554444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-20 Score=178.64 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE 378 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 378 (584)
.....+++++..+..... ..+..+.++..+|.++...|++ ++|+.+|++++++.. ....++..+|.+|.
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~ 148 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------ELVEAWNQLGEVYW 148 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHH
Confidence 344445555555444332 2577899999999999999999 999999999999853 34679999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV---------GRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
..|++++|+.+|++++++.+. ..++..+|.++... |++++|+.+|++++++ .+..
T Consensus 149 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~ 212 (474)
T 4abn_A 149 KKGDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLD 212 (474)
T ss_dssp HHTCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred HcCCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence 999999999999999976421 47888999999999 9999999999999996 3345
Q ss_pred HHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQL--------YRINEATELFEEARGVLEQECGSCHL---DTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 450 ~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
..++..+|.++... |++++|+.+|++++++ +| ....++.++|.+|...|++++|+.+|+++
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68999999999999 9999999999999999 77 88999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 519 LKVREEKLGTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+++ +|+...++..++.++..+|++++|..
T Consensus 285 l~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 285 AAL--------DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 89999999999999999999999983
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-19 Score=163.10 Aligned_cols=249 Identities=14% Similarity=0.093 Sum_probs=198.1
Q ss_pred hcCChhhHHHHHHHHHHHHHhc-cC-CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 127 SLGRFEEAVPVLERSIEVVDIG-KG-SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 127 ~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
..|++++|.++++++.+..+.. .. .......+..+...|.+|...|++++|+..|.+++++.... .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4577888888888888766531 11 12233344567778899999999999999999999998764 23446688999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI 284 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 284 (584)
.+|.+|...|++++|+.+|++++++.+..+ +....+.++..+|.+|.. |++++|+.+|++++.+....++......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 999999999999999999999999988766 344567889999999999 99999999999999999887777778899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChH
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 364 (584)
+.++|.++..+|++++|+.+|++++.+..... ..+....++..+|.++..+|++++|+.+|++++ +.+.. ...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~----~~~ 230 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF----SGS 230 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS----TTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC----CCC
Confidence 99999999999999999999999999977653 133456688999999999999999999999999 65331 112
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 365 EIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
.....+..++..+ ..|+.+....
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2344555666655 4566554444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-19 Score=156.88 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=187.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 5778899999999999999999999999999998532 3578899999999999999999999999988654
Q ss_pred CCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
. ..++..+|.++... |++++|+.++++++. ....+....++..+|.++...|++++|+.+++++++
T Consensus 75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56788999999999 999999999999987 112344578899999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAELLKETGRARNRKGKS 557 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (584)
. .|....++..+|.++...|++++|..++++++.. .| .....+..++.++...|+.++|. .+
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 204 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAY-EY 204 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence 8 7777889999999999999999999999999997 56 67778889999999999999998 88
Q ss_pred HHHHHhhhhhhhHH
Q 007930 558 LENLLDSNAYRVKK 571 (584)
Q Consensus 558 l~~~~~~~~~~~~~ 571 (584)
++.++...|+....
T Consensus 205 ~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 205 EAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHHhCCCCHHH
Confidence 88888777766554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-19 Score=154.75 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=185.1
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 35677888999999999999999999999999987 5677889999999999999999999999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
...++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.++++++
T Consensus 75 ---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 75 ---------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ---------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356889999999999 999999999999987 1 2334456788899999999999999999999998
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+. .+....++..+|.++...|++++|+.+++++++. .| .....+..++.++...|++++|..+
T Consensus 141 ~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 141 AA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Hh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 85 2233578999999999999999999999999998 56 6677888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
++.+... .|+...+..
T Consensus 205 ~~~~~~~--------~p~~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQAN--------FPYSEELQT 220 (225)
T ss_dssp HHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHh--------CCCCHHHHH
Confidence 9998876 566555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=164.61 Aligned_cols=220 Identities=20% Similarity=0.193 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+..+..+|.++...|++++|+..+++++. ..+....++..+|.++...|++++|+..++++++. .
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------ENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D 87 (243)
T ss_dssp --------------------CCTTHHHHHT------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 456688999999999999999999999876 35556788999999999999999999999999988 5
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+....++..+|.++...|++++|+.+++++++.... ...++..+|.++...|++++|+.+++++++..+..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 777889999999999999999999999999998633 25678999999999999999999999999886554
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 222 (243)
T 2q7f_A 159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI- 222 (243)
T ss_dssp -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence 567889999999999999999999999885 2234578999999999999999999999999998
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.|+...++..++.+....|
T Consensus 223 -------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 -------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp -------CTTCHHHHHHHTC------
T ss_pred -------CcchHHHHHHHHHHHhhcc
Confidence 7888888888877665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=167.61 Aligned_cols=258 Identities=11% Similarity=0.021 Sum_probs=203.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (584)
+......|++++|+..++++++..+ ...+..+.++..+|.++...|++++|+..|++++.. .+....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence 3344556889999999999987521 123456778999999999999999999999999875 556677899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
.+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++... .+
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~-- 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DP-- 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH--
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------Ch--
Confidence 9999999999999999999999998 5777889999999999999999999999999998533 11
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.....+ .+....|++++|+..+++++...+.. . ....++.++...++.++|+..+++++...... .
T Consensus 146 -~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 -FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp -HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred -HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 222222 34467799999999999998875433 1 11357778888999999999999988753321 1
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
+....++..+|.++...|++++|+.+|++++.+ +|... ...+.++..+|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 233688999999999999999999999999987 55432 34477888999999998877
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=178.14 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=183.4
Q ss_pred CcchHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
..+..+.++..+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 167 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC- 167 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4667788999999999999999 9999999999998 68889999999999999999999999999999874
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-----
Q 007930 356 KPAPATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV----- 421 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 421 (584)
+. ..++..+|.++... |++++|+.+|++++++.+.. ..++..+|.++...
T Consensus 168 --------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 168 --------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp --------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred --------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence 12 47899999999999 99999999999999987665 67888999999999
Q ss_pred ---ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 422 ---GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 422 ---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
|++++|+.+|++++.+... .+....++.++|.++...|++++|+..|++++++ +|+...++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 9999999999999996110 0145789999999999999999999999999999 88889999999
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a 518 (584)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=160.88 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=188.3
Q ss_pred cccH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 320 HLSV-ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 320 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
+|.. +.++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.+++++++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---------SADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3443 889999999999999999999999999988422 367899999999999999999999999998865
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.. ..++..+|.++...|++++|+.++++++. ....+....++..+|.++...|++++|+.+++++++
T Consensus 103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 56788999999999999999999999987 112345678899999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSL 558 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l 558 (584)
. .|....++..+|.++...|++++|..+++++++. .|....++..++.++...|++++|. ..+
T Consensus 170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~ 232 (252)
T 2ho1_A 170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG 232 (252)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence 8 7777899999999999999999999999999886 6778889999999999999999999 899
Q ss_pred HHHHhhhhhhhHH
Q 007930 559 ENLLDSNAYRVKK 571 (584)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (584)
+.++...|+....
T Consensus 233 ~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 233 LQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHCTTSHHH
T ss_pred HHHHHHCCCCHHH
Confidence 9999888776553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=185.84 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.|..+.+++++|.++..+|++++|+.+|++++++.++. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 46778999999999999999999999999999997765 788999999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.+....++.++|.++..+|++++|++.|++++++ +|+...++.++|.+|..+|++++|+..|++++++
T Consensus 73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3455789999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|+...++.+||.++..+|++++|. ..++.+++..++.
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQ 178 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHH
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhH
Confidence 8999999999999999999999999 7888877665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-17 Score=170.97 Aligned_cols=353 Identities=14% Similarity=0.088 Sum_probs=262.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhh
Q 007930 77 LARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALA 156 (584)
Q Consensus 77 ~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (584)
.|..+...|. +++|...|+++-.. .. .+...+...|++++|.++++++. .+
T Consensus 1055 IA~Iai~lgl-yEEAf~IYkKa~~~-------------~~---A~~VLie~i~nldrAiE~Aervn----------~p-- 1105 (1630)
T 1xi4_A 1055 IANIAISNEL-FEEAFAIFRKFDVN-------------TS---AVQVLIEHIGNLDRAYEFAERCN----------EP-- 1105 (1630)
T ss_pred HHHHHHhCCC-HHHHHHHHHHcCCH-------------HH---HHHHHHHHHhhHHHHHHHHHhcC----------CH--
Confidence 4888888998 89999988886421 11 12223447788888888888641 22
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 157 KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 157 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
.+|..+|.++...|++++|+..|.++ +....+..+|.++...|++++|++++..+.+..+...
T Consensus 1106 --~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A 1106 --AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence 45999999999999999999999775 2356778899999999999999999999988653321
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
+...+|.+|.+++++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 12348899999999885 444421 2333 34567999999999999999999985
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
..|..++.++.++|++++|++.++++.. ..+|...+.++...|++..|..+... +..
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence 2677899999999999999999998832 36888999999999999999987764 322
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFE 474 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 474 (584)
. +..+..++..|...|.+++|+.+++.++.+ .+.....+..+|.++.+ .++..+++++|.
T Consensus 1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1279 H----------ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 234457899999999999999999999985 23345667777777765 467778888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV------REEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
..+.+-+-+. --+.+..|..+..+|.+-|+++.|.....+.... +..... ++.+++.++.....|...+
T Consensus 1341 ~rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1341 SRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 7776511000 0145678899999999999999999555444321 222222 4566788888888887555
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=181.43 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=162.0
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|..+.++++||.++..+|++++|+.+|++++++.. ....++.++|.++..+|++++|+.+|++++++.++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 688999999999999999999999999999999853 34789999999999999999999999999999776
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++.++|.++..+|++++|+++|++++++ .+....++.++|.++..+|++++|+..|++++++
T Consensus 76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 788999999999999999999999999996 3445789999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
+|+...++.++|.++..+|++++|.+.+++++++.....
T Consensus 141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 899999999999999999999999999999999976543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=153.22 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL-SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
...+..+|.++...|++++|+..|++++++ .| ....++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------ 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------
Confidence 367889999999999999999999999998 33 555778889999999999999999999999874
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
|....++..+|.++..+|++++|+..+++++++.+.........+.++..+|.++...|++++|+.+|++++++
T Consensus 73 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 146 (228)
T 4i17_A 73 ---YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--- 146 (228)
T ss_dssp ---CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred ---cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence 33578899999999999999999999999999877653223334577899999999999999999999999984
Q ss_pred cCCCCCch--HHHHHHHHHHHHHhhCCH---------------------------HHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 441 SGESKSAF--FGIVLNQMGLACLQLYRI---------------------------NEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 441 ~~~~~~~~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
.|. ...++..+|.++...|+. ++|+.+|++++++ .|+.
T Consensus 147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~ 213 (228)
T 4i17_A 147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNR 213 (228)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCC
Confidence 566 678999999999999888 8999999999998 7888
Q ss_pred HHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYD 503 (584)
Q Consensus 492 ~~~~~~la~~~~ 503 (584)
..+...++.+..
T Consensus 214 ~~~~~~l~~i~~ 225 (228)
T 4i17_A 214 TEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 788887777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-18 Score=151.89 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=180.3
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+.....++.+|..++..|++++|+..|+++++.. ++++....+++.+|.++...|++++|+..|++++...+.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 45567788999999999999999999999998861 223444899999999999999999999999999998543
Q ss_pred CCCCChHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEA--------LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
++....+++.+|.++.. .|++++|+..|++++...++... +. .+..
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~--------------~a~~ 138 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------VD--------------DATQ 138 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------HH--------------HHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------HH--------------HHHH
Confidence 24567889999999999 99999999999999998766521 10 1111
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL---- 505 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 505 (584)
.+..... .....++.+|.++...|++++|+..|+++++. .|+++....+++.+|.+|..+
T Consensus 139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence 1111111 12345788999999999999999999999998 333444788999999999987
Q ss_pred ------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 506 ------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 506 ------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
|++++|+..|+++++.. |++|....+...++.++..+|+++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999872 556677889999999999999987765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-18 Score=147.04 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLE-DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
...+..+|.++...|++++|+..|++++++.+ .. ..++..+|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-------SVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 37889999999999999999999999999875 32 356677999999999999999999999984
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH-------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL-------GVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+....++..+|.++...|++++|+..+++++++ .|... .++..+|.++...|++++|+.+|+++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 5567889999999999999999999999999998 66655 67999999999999999999999999
Q ss_pred HHHHHHHhCCCChh--HHHHHHHHHHHHHHhchH---------------------------HHHHHHHHHHHHhhhhhhh
Q 007930 519 LKVREEKLGTANPD--IDDEKERLAELLKETGRA---------------------------RNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 519 ~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~l~~~~~~~~~~~ 569 (584)
+++ +|+ ...++.++|.++...|+. ++|. ..++.+++.+|+..
T Consensus 144 l~~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 144 TDV--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV-DYLGEAVTLSPNRT 214 (228)
T ss_dssp TTS--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCH
T ss_pred Hhc--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCH
Confidence 997 899 899999999999999999 8888 89999998888766
Q ss_pred HH
Q 007930 570 KK 571 (584)
Q Consensus 570 ~~ 571 (584)
..
T Consensus 215 ~~ 216 (228)
T 4i17_A 215 EI 216 (228)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-17 Score=145.57 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++..|...
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 86 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---- 86 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc----
Confidence 458899999999999999999999999872 33445589999999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------HHHHHHHHHcC
Q 007930 239 LEEAADRRLMALVYEA--------KADYESALEHLVLASMVMIANGQENEVAAID--------------VSIGNIYMSLC 296 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~la~~~~~~g 296 (584)
....+++.+|.++.. .|++++|+..|++++.. .++.+....+. +.+|.+|...|
T Consensus 87 -~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 87 -RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp -THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345679999999999 99999999999988764 33344444444 88999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI----------GKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
++++|+..|+++++.. ++.+....++..+|.+|..+ |++++|+..|+++++..+. ++..
T Consensus 163 ~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~ 231 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD------SPLL 231 (261)
T ss_dssp CHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT------CTHH
T ss_pred CHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC------ChHH
Confidence 9999999999999872 22344788999999999977 9999999999999998533 4566
Q ss_pred HHHHHHHHHHHHHhcCHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEAL 387 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~ 387 (584)
..+...++.++...++++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 778888888888888776544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-17 Score=148.29 Aligned_cols=225 Identities=13% Similarity=0.048 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-------cccH-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-------IGKL-------RESKSYCENALR-VCAKPAPATAP 363 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 363 (584)
++|+..|++++.. .|....++..+|.++.. .|++ ++|+..|++++. +.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--------- 95 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---------
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---------
Confidence 6888999999988 68889999999998874 4776 899999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
|....+|..+|.++...|++++|...|++++++.+.. . ..++..+|.++...|++++|+..|+++++..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 164 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----P--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----- 164 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----T--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----c--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----
Confidence 2346789999999999999999999999999864432 1 1277889999999999999999999998741
Q ss_pred CCCchHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQ-LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+....++...+.+... .|++++|...|+++++. .|....++..++.++...|++++|..+|++++...
T Consensus 165 ---p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 165 ---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp ---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 1223455555555433 69999999999999998 67788999999999999999999999999999840
Q ss_pred HHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 523 EEKLGTANP-DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 523 ~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
...| .....+..++.++...|+.++|. ..++.++...|+.
T Consensus 234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~~ 274 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFREE 274 (308)
T ss_dssp -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTTT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcccc
Confidence 0145 36778899999999999999999 8888888887763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-16 Score=152.05 Aligned_cols=240 Identities=17% Similarity=0.167 Sum_probs=205.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS---------LEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
....|..+...|++++|++.|.++++..+...+... .....++..+|.+|...|++++|++++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445677788999999999999999987766543211 22345688999999999999999999999998887
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
..++......+...++.++...|++++|+.++++++....... +......++..+|.++...|++++|..++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 7666666667788899999999999999999999999987754 45677889999999999999999999999999998
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
... ..+.+....++..++.+|...|++++|..++++++.+.+.....+...+.++..+|.++...|++.+|..+|.+
T Consensus 165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKK---LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTT---SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHh---cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 876 34567788999999999999999999999999999999888666666788889999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 007930 434 AVVKLRASGESKSA 447 (584)
Q Consensus 434 a~~~~~~~~~~~~~ 447 (584)
++..+...+.....
T Consensus 242 a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 242 SFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHTTTSSCH
T ss_pred HHHHhhhhhhhhhH
Confidence 99998877655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=162.10 Aligned_cols=331 Identities=14% Similarity=0.087 Sum_probs=155.7
Q ss_pred HcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHH
Q 007930 83 SSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYM 162 (584)
Q Consensus 83 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 162 (584)
..|+ .++|.+++++.- + ..+|..+|.++...|++++|++.|.++- ++ ..+.
T Consensus 15 ~~~~-ld~A~~fae~~~-----------~---~~vWs~La~A~l~~g~~~eAIdsfika~----------D~----~~y~ 65 (449)
T 1b89_A 15 HIGN-LDRAYEFAERCN-----------E---PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------DP----SSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhCC-----------C---hHHHHHHHHHHHHcCCHHHHHHHHHcCC----------CH----HHHH
Confidence 4565 677777777651 2 2488899999999999999999997741 11 2378
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.++..+...|++++|+.+++.+.+. .++ ..+...++.+|.+.|++.++.++++. + + .
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~--------p--n----~ 122 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING--------P--N----N 122 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC--------C--------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC--------C--c----H
Confidence 8888999999999999999888775 122 45677899999999999999888752 1 1 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++..+|..+...|.|++|..+|.++ ..+..+|.++..+|++++|++.++++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------------- 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN------------- 175 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------------
Confidence 26999999999999999999999965 367889999999999999999999871
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
...+|.....++...|+++.|..+... +. .+++. ...+..+|...|++++|+.++++++.+.+..
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-- 240 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLH---IV-------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH-- 240 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT-------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHH---HH-------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence 356778889999999999999666554 11 12222 3458889999999999999999998765443
Q ss_pred CcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH--
Q 007930 403 YHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG-- 478 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-- 478 (584)
..++..+|.+|.+ .++..+.++.|...+.+-+-+.. -.....|..+..+|...++++.|+...-+...
T Consensus 241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a 312 (449)
T 1b89_A 241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA 312 (449)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence 4566677777654 56777777777666554321100 01235678889999999999999876544321
Q ss_pred ----HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 479 ----VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 479 ----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+..+.. .+...+.++.....|. +....++..+..++
T Consensus 313 ~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 313 WKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp CCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 1122211 3445567777777766 45555666666665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=136.87 Aligned_cols=147 Identities=11% Similarity=0.045 Sum_probs=128.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
.||.++...|++++|+..+++++...++. ...++.+|.+|...|++++|+.+|++++++ .|....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 47888999999999999999998776665 556678999999999999999999999996 344578
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHhCCCC
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI-LEYILKVREEKLGTAN 530 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~ 530 (584)
++..+|.++...|++++|+.+|++++++ +|+...++..+|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 9999999999999999999999999999 899999999999999999999887765 5999999 8
Q ss_pred hhHHHHHHHHHHHHHHhch
Q 007930 531 PDIDDEKERLAELLKETGR 549 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~ 549 (584)
|+++.++...+.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999988875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-17 Score=154.73 Aligned_cols=148 Identities=11% Similarity=-0.049 Sum_probs=138.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
..+..+..+|+|++|+.++++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34455678999999999999999999988777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
..+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+.+....|+.++..+|++++|. ..+..+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~ 461 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=146.42 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-HHHHhhcCCcccH
Q 007930 259 ESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-------LCRF-------DEAIFSYQKGLT-VFKATRGEDHLSV 323 (584)
Q Consensus 259 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~ 323 (584)
++|+..|++++.. .|....++..+|.++.. .|++ ++|+..|+++++ + .|..
T Consensus 33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN 98 (308)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence 6888899998875 56677888888888764 5886 899999999988 5 5778
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
..++..+|.++...|++++|...|++++++... + + ..++..+|.++...|++++|+..|+++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 167 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----D-P--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--- 167 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----C-T--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----C-c--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence 889999999999999999999999999986422 1 1 1288999999999999999999999999865432
Q ss_pred cccHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYV-VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..++...+.+... .|++++|+.+|+++++.. |....++..+|.++...|++++|..+|++++..
T Consensus 168 ----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--- 232 (308)
T 2ond_A 168 ----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--- 232 (308)
T ss_dssp ----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS---
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 3344444554333 799999999999999963 223678999999999999999999999999984
Q ss_pred HhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 483 ECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 483 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....| ....++..++..+...|++++|...++++++.
T Consensus 233 --~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 --GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01133 35678899999999999999999999999998
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=135.52 Aligned_cols=194 Identities=12% Similarity=0.133 Sum_probs=157.4
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
+..|++++|...++.... +......++..+|.++...|++++|+.++++++.+.+. ..+.+....++.+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK---SGDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHH
Confidence 467899999885544321 24577899999999999999999999999999999887 3456778899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+.++++++.+.............++.++|.++...|++++|+.++++++.+.+..+. ......+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence 99999999999999999999999998763344467888999999999999999999999999998877553 3345677
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
+..+|.++...|++++|..++++++++.++... ......++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 899999999999999999999999999877643 23344444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=134.79 Aligned_cols=193 Identities=14% Similarity=0.142 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007930 169 SSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248 (584)
Q Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 248 (584)
...|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+..... ..+..+.++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 467899999885544321 2346788999999999999999999999999999998776 456778889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHH
Q 007930 249 ALVYEAKADYESALEHLVLASMVMIANGQEN-EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327 (584)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 327 (584)
|.++...|++++|+.++++++.+....++.+ ....++.++|.++...|++++|+.++++++.+.+... +......++
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 150 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAF 150 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHHH
Confidence 9999999999999999999999999887544 7888999999999999999999999999999877654 234557778
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
..+|.++...|++++|+.++++++++.+. ..+......+...++.+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE---LEDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHhcccch
Confidence 99999999999999999999999999887 33455555666555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=154.23 Aligned_cols=334 Identities=14% Similarity=0.085 Sum_probs=157.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETC 203 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (584)
.....|+.++|.+++++. +++ .+|..+|.++...|++++|++.|.++- ....+
T Consensus 12 ll~~~~~ld~A~~fae~~----------~~~----~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y 64 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----------NEP----AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSY 64 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----------CCh----HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHH
Confidence 344678899999999885 122 348899999999999999999997641 23467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAA 283 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 283 (584)
..++..+...|++++|+.+++.+++..+. +.+...++.+|.+.|++.++.+++.. |.. .
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----------pn~-~ 123 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFING-----------PNN-A 123 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC-----------C----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHcC-----------CcH-H
Confidence 77888899999999999999988874322 13466789999999999999887752 222 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
.+..+|..+...|+|++|..+|.++ ..+..+|.++..+|++++|++.++++. .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----~------- 176 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN----S------- 176 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----C-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC----C-------
Confidence 8899999999999999999999975 257789999999999999999999982 1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..+|..++.++...|+++.|..+....+ . + +.-...+..+|.+.|++++|+.++++++.+
T Consensus 177 ---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-------~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~l------ 236 (449)
T 1b89_A 177 ---TRTWKEVCFACVDGKEFRLAQMCGLHIV-V-------H---ADELEELINYYQDRGYFEELITMLEAALGL------ 236 (449)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHTTTTTT-T-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred ---chhHHHHHHHHHHcCcHHHHHHHHHHHH-h-------C---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence 4788889999999999999966655311 1 1 122336788999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 007930 444 SKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK- 520 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 520 (584)
.+....++..+|.+|.+ .++..+.++.|...+.+-+-+.. -+.+..|..+..+|..-++++.|.....+...
T Consensus 237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 22335677788877764 46777777777766665210000 03345788999999999999999876654321
Q ss_pred -----HHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 521 -----VREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 521 -----~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.+..+.. ++.+.+.++.....|. +...... ..|..++
T Consensus 312 a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l 353 (449)
T 1b89_A 312 AWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLL-NDLLMVL 353 (449)
T ss_dssp TCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHH
T ss_pred hhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHH-HHHHHHH
Confidence 1111111 3455778888877777 6666666 4444444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=134.97 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
.....+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 71 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 456788999999999999999999999887654332 577889999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 139 (186)
T 3as5_A 72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--- 139 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---
Confidence 2234678999999999999999999999999998 7778899999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.|....++..+|.++...|++++|. ..++.++...|+...
T Consensus 140 -----~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 -----RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEGASV 179 (186)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHCCCG
T ss_pred -----CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCchh
Confidence 6888899999999999999999999 888888877776543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-15 Score=144.39 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGS--------GQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
...+..|+.+...|+ |++|++.|.++++..+..... ........++..+|.+|...|++++|++++.+++.
T Consensus 5 ~~~l~~a~~l~~~~~-y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQ-YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTC-HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346788999999999 999999999999865543221 11234556788999999999999999999999999
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
..+... .......+...+|.++...|++++|+.++++++...... .+.+....++..+|.++...|++++|..++
T Consensus 84 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 84 YMMQFA---KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHHTSC---HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcc---chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 886532 222223457788999999999999999999999998764 335567889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCChhHHH
Q 007930 224 KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN-EVAAIDVSIGNIYMSLCRFDEAI 302 (584)
Q Consensus 224 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 302 (584)
++++....... +....+.++..+|.+|...|++++|..++++++.......+++ ....++..+|.++...|++.+|.
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 159 NDLLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99998887766 5567788999999999999999999999999998887776553 45778889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 007930 303 FSYQKGLTVFKATRGED 319 (584)
Q Consensus 303 ~~~~~al~~~~~~~~~~ 319 (584)
.+|.++++.+.......
T Consensus 237 ~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 237 SYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 99999999987765443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-16 Score=142.33 Aligned_cols=198 Identities=12% Similarity=-0.048 Sum_probs=161.9
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.....+...+..+...|++++|++.+.++++.... ..........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 444556677888999999999999999999987533 11223345667789999999999999999999999876554
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
.+....+.++.++|.+|...|++++|+.+|++++++.+..... ......++.++|.+|..+|++++|+.++++++++.
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344467789999999999999999999999999987775432 22233789999999999999999999999999997
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYILKVREEK 525 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 525 (584)
.... .......++.++|.+|..+|++++| ..++++++.+.+..
T Consensus 227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 5432 3556788999999999999999999 88899999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=141.87 Aligned_cols=195 Identities=12% Similarity=-0.052 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
...+...+..+...|++++|...+++++..... ..+.......+..+|.++...|++++|+.++++++.+.... .+
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-~~ 150 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-ID 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-SC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-cc
Confidence 344455677889999999999999999875322 11111224456679999999999999999999999965443 34
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
......++.++|.+|...|++++|+.+|+++++..+.... ..+....++.++|.+|..+|++++|+.++++++++....
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 4456778999999999999999999999999998887633 455677899999999999999999999999999998776
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGR-VEDAIEILEYILKVREEK 525 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~ 525 (584)
.. ....+.++..+|.+|..+|+ +++|+.+|++|+.+++..
T Consensus 230 ~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 230 NS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp TB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred Cc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 44 56678999999999999995 699999999999998754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-16 Score=139.83 Aligned_cols=199 Identities=11% Similarity=0.003 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
+.....+...+..+...|+|++|+..++++++..+. ..........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 445566677899999999999999999999876422 11122233456779999999999999999999999764321
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+......++..+|.+|...|++++|+.+|++++++....... ....+.++.++|.+|..+|++++|+.++++++.+
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2233457799999999999999999999999999988776532 2223378999999999999999999999999999
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHhh
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEA-IFSYQKGLTVFKATR 316 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 316 (584)
....++....+.++.++|.+|..+|++++| ..++++++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 877777778899999999999999999999 888999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=142.30 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE---VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+...+..+...|++++|+..+++++.. ....+. ....+..+|.++...|++++|+.++++++.+.... .+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~ 150 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence 33455677888999999999999988652 122222 24455679999999999999999999999853221 12
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......++.++|.+|...|++++|+.+++++++..+.. ..+.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999988763 3467788889999999999999999999999999999988
Q ss_pred CCCCcccHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHcCCC
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVG-RYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
. +.....+.++.++|.++..+| ++++|+.+|++++.+++..+..
T Consensus 229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7 666777899999999999999 5799999999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=134.72 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH----------------HHHHHHHhccHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ----------------MGVMLYVVGRYGEARSS 430 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~ 430 (584)
+..+...|..+...|++++|+.+|++++...++. ..++.. +|.++...|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567788999999999999999999999987765 455566 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh--
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV-- 508 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 508 (584)
|++++++ .|....++..+|.++...|++++|+.+|++++++ +|+...++..+|.+|...|+.
T Consensus 77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999996 3445789999999999999999999999999999 899999999999999877653
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 509 EDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 509 ~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
..+...+++++. + .| ...+++++|.++...|++++|+ ..++.++..+|+.....
T Consensus 141 ~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 141 KKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCHHHHH
Confidence 445555555443 1 33 3357788999999999999999 99999999888754443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=131.65 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=120.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.||.++...|++++|+..+++++.. .+.....++.+|.+|...|++++|+.+|++++++ +|+..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999999873 4556778899999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++..+|.+|...|++++|+.+|++++++ +|+...++.++|.++...|++++|...+++.+++.+|+.+..
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 99999999999999999999999999999 899999999999999999999988756789999988877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-13 Score=131.49 Aligned_cols=450 Identities=9% Similarity=-0.011 Sum_probs=290.5
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCC---hhhHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGR---FEEAVPVLERS 141 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a 141 (584)
..+|.....+...+......+. ++.+...|++++..+. .....+......-...|+ ++.+..+|+++
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~fP---------~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRFP---------LMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 4578889999999999988888 9999999999999743 234455566677778888 99999999999
Q ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHhcCCh----HHHH----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---
Q 007930 142 IEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL----DRSV----WCYESGLEIQIEALGDSDPRVAETCRYLAEAH--- 210 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--- 210 (584)
+...+. .+.. ..|..........++. +++. ..|++|+.. .|.-++....+|.......
T Consensus 130 l~~~~~-----~~sv--~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 130 LSKELG-----NNDL--SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp TCSSSC-----CCCH--HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHhcCC-----CCCH--HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHHHHHHhc
Confidence 865410 1222 1233333333333433 3444 555555543 3440122223333332222
Q ss_pred ------HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-------------HHHHhccHHHHHHHHHHHHHH
Q 007930 211 ------IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL-------------VYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 211 ------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~-------------~~~~~g~~~~A~~~~~~a~~~ 271 (584)
..+++.+.+..+|++++.+ |. ... ..++..... +-....+|+.|...+.+....
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~i-P~----~~~--~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQ-PM----DCL--ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTS-CC----SSH--HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhC-cc----HHH--HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2345577888888888752 11 001 111111100 111123444444444332221
Q ss_pred HHHcCC--------------------cchHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 272 MIANGQ--------------------ENEVAAIDVSIGNIYMSLCR---------FDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 272 ~~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
...... .......+... +-+...+ .......|++++.. .|.
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y--i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~ 341 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW--IRWESDNKLELSDDLHKARMTYVYMQAAQH--------VCF 341 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTT
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHH--HHHHHhCCccccchhhHHHHHHHHHHHHHH--------cCC
Confidence 111110 00222333333 3333332 23355678888887 678
Q ss_pred HHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--
Q 007930 323 VASIFIRLADLYYRIGKLRESK-SYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED-- 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-- 399 (584)
...+|...+..+...|+.++|. ..|++++..... ....+...+.+....|++++|...|++++...+.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~ 412 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL 412 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999997 999999986532 2467788899999999999999999999986431
Q ss_pred ------CCCC-------cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-C
Q 007930 400 ------TPGY-------HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-R 465 (584)
Q Consensus 400 ------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 465 (584)
.+.. ......++...+.+..+.|+.+.|...|.+|++.. +.....++...+.+....+ +
T Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 413 AALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCC
Confidence 1110 01234567778888888999999999999998741 1111245556666666655 5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++.|..+|+.+++. .|.....+...+......|+.+.|..+|++++... ++.......+......-.
T Consensus 486 ~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 486 TKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp CHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Confidence 99999999999998 55666777788888889999999999999999861 001256677888888889
Q ss_pred HhchHHHHHHHHHHHHHhhhhhhhHHH-HHhHhhcCCC
Q 007930 546 ETGRARNRKGKSLENLLDSNAYRVKKE-VTKRRSGFGF 582 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 582 (584)
..|+.+.+. +..+.+....|+..... ...+|+-.++
T Consensus 553 ~~G~~~~~~-~v~~R~~~~~P~~~~~~~f~~ry~~~~~ 589 (679)
T 4e6h_A 553 KVGSLNSVR-TLEKRFFEKFPEVNKLEEFTNKYKVLDV 589 (679)
T ss_dssp HTCCSHHHH-HHHHHHHHHSTTCCHHHHHHHHTCBTTB
T ss_pred HcCCHHHHH-HHHHHHHHhCCCCcHHHHHHHHhcCCcc
Confidence 999999988 88888888888765554 6667765554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-16 Score=133.24 Aligned_cols=164 Identities=11% Similarity=0.157 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH----------------HHHHHHHcccHHHHHHH
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR----------------LADLYYRIGKLRESKSY 346 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 346 (584)
..+...|..+...|++++|+..|+++++. .|....++.. +|.++...|++++|+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888999999999999999999998 6777888888 99999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH--
Q 007930 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY-- 424 (584)
Q Consensus 347 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 424 (584)
|++++++.+ ....++..+|.++...|++++|+.+|++++++.|.. ..++.++|.+|...|+.
T Consensus 77 ~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQKAP---------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence 999999853 346889999999999999999999999999997766 67888999999877653
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..+...+++++. +.....+++.+|.++...|++++|+.+|++++++
T Consensus 141 ~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555655542 2223456788899999999999999999999998
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=130.40 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=150.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+.+++++++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345677889999999999999999999999876542 23678899999999999999999999999988554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3 567889999999999999999999999986 2234578899999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....++..+|.++...|++++|..++++++++.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67778999999999999999999999999999873
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=163.79 Aligned_cols=200 Identities=8% Similarity=-0.061 Sum_probs=166.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
...|++++|+..++++++..-.......|....++..+|.++...|++++|+..|+++++.... ...+++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---------RWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---------CHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---------hHHHHHH
Confidence 7889999999999999821111111126788889999999999999999999999999998643 3689999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++ +..|++++++ .+....+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a 536 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISA 536 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHH
Confidence 9999999999999999999999998776 5678899999999999999 9999999986 3445679
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYILKVREEK 525 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 525 (584)
++++|.++...|++++|+..|++++++ +|....++.++|.++...|+.+++ ...++++++.....
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999998 899999999999999888876666 67777777776554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=165.32 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=160.5
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Q 007930 322 SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
....++...+ ...|++++|++.+++++...-.. .....+....++..+|.++...|++++|+..|+++++..++.
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~- 466 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA-DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR- 466 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc-cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-
Confidence 3333444444 77899999999999998211000 011224456789999999999999999999999999998776
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
..+++.+|.++...|++++|+..|++++++ .+....++.++|.++...|++++ +.+|++++++
T Consensus 467 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-- 529 (681)
T 2pzi_A 467 ------WRLVWYRAVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST-- 529 (681)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--
Confidence 678899999999999999999999999996 33346789999999999999999 9999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+|+...+++++|.++..+|++++|+..|++++++ +|+...++.++|.++...|+
T Consensus 530 ------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 530 ------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC----
T ss_pred ------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999999998 89999999999999977665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=145.88 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=145.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR 153 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 153 (584)
++..+..+..+|+ |++|+..+++++++.++.. +..+|..+.++.+||.+|..+|+|++|+.++++++.+.....|+++
T Consensus 312 ~le~a~~~~~qg~-~~eA~~l~~~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 312 TLEKIDKARSEGL-YHEVVKLCRECLEKQEPVF-ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455666778999 9999999999999999988 6778999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 007930 154 ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232 (584)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (584)
|.+. .+++++|.+|..+|++++|+.+|++++++.+..+|++||.+......++.++..++.+.+|...|.++.+...+
T Consensus 390 p~~a-~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 390 AQLG-MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9876 78999999999999999999999999999999999999999999999999999999999999999999776543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=130.06 Aligned_cols=183 Identities=10% Similarity=0.019 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...++.+|..+...|++++|+..|++++...+.. +....++..+|.++...|++++|+..|+++++... .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence 4678899999999999999999999999876543 23356788999999999999999999999998632 23
Q ss_pred chHHHHHHHHHHHHHh------------------hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH--------------
Q 007930 447 AFFGIVLNQMGLACLQ------------------LYRINEATELFEEARGVLEQECGSCHLDTLGV-------------- 494 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-------------- 494 (584)
+....+++.+|.++.. .|++++|+..|+++++. .|+++....+
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3345688888988876 57899999999999987 2333332222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
...+|.+|...|++++|+..|+++++.. |++|....++..+|.++..+|++++|. ..++.+....|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCCch
Confidence 2578999999999999999999999972 334556689999999999999999999 88888887776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-15 Score=121.26 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=126.7
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+....+.++..+|.++...|++++|+.++++++++..... +......++..+|.++...|++++|+.++++++.+.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888888888888888876643 23455678888888888888888888888888888766
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
..+++....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus 82 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456667788889999999999999999999998888776 55566677888899999999999999999999888
Q ss_pred HHHH
Q 007930 437 KLRA 440 (584)
Q Consensus 437 ~~~~ 440 (584)
+.+.
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-15 Score=120.38 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.+..+.++..+|.++...|++++|+.++++++++.+... +....+.++..+|.++...|++++|+.++++++......
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999999999998876 446667889999999999999999999999999999888
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|++++|+.++++++++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999987654 3466788999999999999999999999999999876
Q ss_pred c
Q 007930 356 K 356 (584)
Q Consensus 356 ~ 356 (584)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=129.84 Aligned_cols=199 Identities=12% Similarity=0.035 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|..+...|++++|+..|++++... +.++....+++.+|.++...|++++|+..|+++++..|...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---- 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---- 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 348889999999999999999999999872 33455678999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
....+++.+|.++...|.. ....+..++..+...|++++|+..|+++++...
T Consensus 76 -~~~~a~~~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----- 127 (225)
T 2yhc_A 76 -NIDYVMYMRGLTNMALDDS----------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----- 127 (225)
T ss_dssp -THHHHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCT-----
T ss_pred -cHHHHHHHHHHHHHhhhhh----------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-----
Confidence 2344688888888764421 001122334444445555555555555544311
Q ss_pred Cccc--------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 319 DHLS--------------VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 319 ~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
+++. .......+|.+|...|++++|+..|+++++..+. .+....++..+|.++..+|+++
T Consensus 128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD------TQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC------CCccHHHHHHHHHHHHHcCCcH
Confidence 0111 1123357899999999999999999999998643 3556689999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 007930 385 EALKLLQKAMKLLEDT 400 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~ 400 (584)
+|+..++++....++.
T Consensus 202 ~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 202 QAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhhCCCc
Confidence 9999999877665544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=117.54 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+..+..+.++|..++..|++++|+..|++++++ .|....++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 4556888899999999999999999999999986 3445789999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+|....++..+|.++..+|++++|+..|++++++ +|++..++..|+.++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 8899999999999999999999999999999999 899999999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=123.38 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=196.9
Q ss_pred HHcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 293 MSLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG--KLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 293 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
...|.+ ++|+..+.+++.+ +|....+++..+.++...| ++++++.++.+++....+ ...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---------~y~a 105 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---------NYQI 105 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---------CCHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---------cHHH
Confidence 344544 6899999999999 8999999999999999999 999999999999998644 3578
Q ss_pred HHHHHHHH----HHh---cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHH
Q 007930 370 LTEISAIY----EAL---NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG--EARSSFESAVVKLRA 440 (584)
Q Consensus 370 ~~~la~~~----~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~ 440 (584)
|+..+.++ ... +++++++.++.++++..++. ..++...+.++...|.++ +++++++++++.
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 88888888 666 78999999999999988777 678889999999999998 999999999985
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH-HHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYR------INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED-AIE 513 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~ 513 (584)
++....+|...+.+....++ ++++++++.+++.. +|....++..++.++...|+..+ ...
T Consensus 176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 34456789999999999887 99999999999999 99999999999999999998655 444
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-hhhhhhHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD-SNAYRVKK 571 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~-~~~~~~~~ 571 (584)
+..+++.+ +..+|....++..++.++.+.|+.++|. +.++.+.+ .+|-+.+.
T Consensus 243 ~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 243 FSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGGGHHH
T ss_pred HHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChHHHHH
Confidence 66666553 1124777889999999999999999999 88888886 57765553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-15 Score=138.05 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=116.6
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|+|++|+..+++++++.....++.++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+.+..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999998887778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=112.67 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.|..+..+.++|..++..|++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 47789999999999999999999999999999987765 678899999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
.+....++..+|.++..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 3345689999999999999999999999999999 899889999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-15 Score=137.92 Aligned_cols=132 Identities=13% Similarity=-0.014 Sum_probs=124.2
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
-+..+|++++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.+++++++++++.+|++||+.+..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999999887777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+||.+|..+|++++|+.+|++|+++++..+|++||.+.+++.+|+.+...++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999876553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=119.76 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=103.2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.|....+++.+|.++...|++++|+.+|++++.+ +|....++.++|.++..+|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5667889999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
+|+.+.+++++|.+|..+|++++|. ..++.++...|+....+.
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~~~~~~~ 142 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSNDEKLKIK 142 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCCHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCHHHHHH
Confidence 8999999999999999999999999 999999988877664443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=123.31 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
..+..+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++.. .+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLE--------YQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------GC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------cC
Confidence 457788999999999999999999999999887 678899999999999999999999998764 11
Q ss_pred hHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 448 FFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 448 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.......++.+.. ..++..+|+..++++++. +|+...+++.+|.++...|++++|+..|+++++.
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 137 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV----- 137 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence 1233333443322 334455689999999998 8888999999999999999999999999999987
Q ss_pred CCCChhH--HHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 527 GTANPDI--DDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 527 ~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+|.. ..++..++.++..+|+.++|. ..++.++
T Consensus 138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al 171 (176)
T 2r5s_A 138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQL 171 (176)
T ss_dssp ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHH
T ss_pred ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHH
Confidence 6654 568999999999999999999 5555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-13 Score=120.66 Aligned_cols=237 Identities=11% Similarity=-0.034 Sum_probs=198.8
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC--RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
....++|+..+.+++.+ .|....+++..+.++...| ++++++..+.+++.. +|....+++..+.
T Consensus 46 ~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHH
Confidence 34447899999999886 8888999999999999999 999999999999998 7888889999999
Q ss_pred HH----HHc---ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHhCCCC
Q 007930 333 LY----YRI---GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE--EALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 333 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~ 403 (584)
++ ... +++++++.++.++++...+ ...+|...+.+....|.++ ++++++.++++..+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk---------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--- 179 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK---------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--- 179 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC---
Confidence 88 666 7899999999999998644 3689999999999999998 9999999999887766
Q ss_pred cccHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH-HHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGR------YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE-ATELFEEA 476 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a 476 (584)
..++...+.++...++ ++++++++++++.. .+....+|+.++.++...|+..+ ...++.++
T Consensus 180 ----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 180 ----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6678888999988887 99999999999985 44456889999999999988554 44466655
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHHhCCCChhHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK-VREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
+.+ +...+....++..++.+|.+.|+.++|+++|+.+.+ + +|.....+...+.
T Consensus 248 ~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~ 301 (306)
T 3dra_A 248 VDL-----EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS 301 (306)
T ss_dssp EEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred Hhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence 553 111366778999999999999999999999999886 4 8888777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=129.52 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
....+..+|..+...|++++|+..|++++...++. ..++..+|.++...|++++|+..+++++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------
Confidence 35678899999999999999999999999998776 678889999999999999999999998764
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+.........+..+...++.++|+..+++++.. +|+...+++.+|.++...|++++|+..|++++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 2334566667777788899999999999999999 8999999999999999999999999999999998
Q ss_pred hCCCChhH--HHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 526 LGTANPDI--DDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 526 ~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+|+. ..++.+++.++..+|+.++|. ..++..+
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al 282 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQL 282 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHH
Confidence 7877 889999999999999999998 4444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=135.37 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=139.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-------CchHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-------SAFFGI 451 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~ 451 (584)
.++++++|+..+++++...+.. +.++..+|.++...|++++|+.+|++++.+........ .+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4567778888888877766554 77889999999999999999999999999743221000 011257
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.++|.++...|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+.+|++++++ +|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999999 8888999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
....++..++.++..+|++++|....++.++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976777776643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=122.67 Aligned_cols=169 Identities=15% Similarity=0.012 Sum_probs=135.1
Q ss_pred CCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 68 PDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
|.....++.+|..+...|+ +++|+..|+++++. +|....++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 70 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-- 70 (176)
T ss_dssp ---CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--
T ss_pred CCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--
Confidence 3344568899999999999 99999999999986 56668889999999999999999999999987653
Q ss_pred ccCCchhhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 148 GKGSDRALAKFSGYMQLGDT-CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+ ++.. ...++.+ +...+...+|+..++++++. +|....+++.+|.++...|++++|+..|+++
T Consensus 71 ---p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 71 ---Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ---C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 2211 2223322 22334455689999999998 7888999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
++..|.... ..++..+|.++...|+.++|+..|++++.
T Consensus 135 l~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 135 LKVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 987665432 13588899999999999999999998765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=122.85 Aligned_cols=221 Identities=12% Similarity=-0.034 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-------HHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI-------SAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.++..|.-+ ..+++..|...|.+++.+. |..+.+|..+ +.++...++..+++..+++.+.+.+
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 344445555 5799999999999999996 4468999999 8999999999999999999999877
Q ss_pred hCCCCccc--------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC
Q 007930 399 DTPGYHST--------------IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY 464 (584)
Q Consensus 399 ~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (584)
...+.... ...+...++.++...|++++|.+.|+..+. ..+... ..+.+|.++...+
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAE 149 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTT
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcC
Confidence 76553332 245566789999999999999999988765 234445 8899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAE 542 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~ 542 (584)
++++|+.+|+++... + ++. ...+++.+|.++..+|++++|+.+|++++. ++..|. ..++.+++|.
T Consensus 150 r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM 216 (282)
T ss_dssp CHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence 999999999876553 1 222 245899999999999999999999999874 232266 7789999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhHhhcCCC
Q 007930 543 LLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGF 582 (584)
Q Consensus 543 ~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 582 (584)
++..+|+.++|. ..++.++..+|+ .+.........|
T Consensus 217 aL~~lGr~deA~-~~l~~a~a~~P~---~~~~~aL~~~~~ 252 (282)
T 4f3v_A 217 ARRSQGNESAAV-ALLEWLQTTHPE---PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHTCHHHHH-HHHHHHHHHSCC---HHHHHHHHCTTC
T ss_pred HHHHcCCHHHHH-HHHHHHHhcCCc---HHHHHHHhCCCC
Confidence 999999999999 999999999887 334444444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=142.26 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=127.3
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.|++++|+..++++++..+.. ..++..+|.++...|++++|+.+|++++++ .+....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 478999999999999887665 678899999999999999999999999984 34457899999999
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
+...|++++|+.+|++++++ +|+...++..+|.++...|++++|+.+|++++++ +|+...++.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999999 8888899999999999999999999999999998 8888999999
Q ss_pred HHHHHHHh---chHHHHHHHHHHHHHhhhhhh
Q 007930 540 LAELLKET---GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 540 l~~~~~~~---g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++.++..+ |++++|. ..++.+++.+|..
T Consensus 131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~ 161 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCCC
T ss_pred HHHHHHHhhccccHHHHH-HHHHHHHhcCCcc
Confidence 99999999 9999999 8888888877764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=117.07 Aligned_cols=174 Identities=16% Similarity=0.071 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+.. ...+++++|.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------DGDALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHc
Confidence 567777777653 457789999999999999999999999998752 25789999999998
Q ss_pred hc----CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCc--hH
Q 007930 380 LN----EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSA--FF 449 (584)
Q Consensus 380 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~ 449 (584)
+ ++++|+.+|+++.+. .. ..++.++|.+|.. .+++++|+.+|+++.+. .+ ..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~--g~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~~ 124 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA--GS-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDAA 124 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcch
Confidence 7 899999999999642 11 5677899999988 88999999999999873 22 34
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-G-----RVEDAIEILEYIL 519 (584)
Q Consensus 450 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~ 519 (584)
+.+++++|.+|.. .+++++|+.+|+++.+. +....++++||.+|... | ++++|+.+|+++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 6899999999999 88999999999999874 23345899999999875 3 8999999999999
Q ss_pred HH
Q 007930 520 KV 521 (584)
Q Consensus 520 ~~ 521 (584)
+.
T Consensus 196 ~~ 197 (212)
T 3rjv_A 196 LE 197 (212)
T ss_dssp HH
T ss_pred Hc
Confidence 86
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=115.97 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=94.6
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+....+++.+|.++...|++++|+.+|++++.+ .|....+|.++|.++...|++++|+..|++++++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 4445788899999999999999999999999996 4455789999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|+.+.+++++|.+|..+|++++|+..|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999998
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-14 Score=118.70 Aligned_cols=182 Identities=12% Similarity=-0.019 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
.+|+.+|+++.+.. .+.+++.+|.+|...+++++|+.+|+++.+. ++ ..+++++|.+|..
T Consensus 3 ~eA~~~~~~aa~~g-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence 35778888887651 2678999999999999999999999999764 21 5678899999998
Q ss_pred hc----cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCC--c
Q 007930 421 VG----RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHL--D 490 (584)
Q Consensus 421 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~--~ 490 (584)
+ ++++|+.+|+++.+. ....+++++|.+|.. .+++++|+.+|+++.+. .+ .
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence 7 999999999999762 235789999999998 89999999999999986 44 3
Q ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-c-----hHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-G-----RARNRKGKSLEN 560 (584)
Q Consensus 491 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~l~~ 560 (584)
.+.++++||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+ ..++.
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~ 193 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV 193 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence 57899999999999 89999999999999884 34456899999999865 3 899999 89999
Q ss_pred HHhhhhhhhHH
Q 007930 561 LLDSNAYRVKK 571 (584)
Q Consensus 561 ~~~~~~~~~~~ 571 (584)
+.+........
T Consensus 194 A~~~g~~~A~~ 204 (212)
T 3rjv_A 194 SCLEGFDTGCE 204 (212)
T ss_dssp HHHHTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 88776655443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=123.58 Aligned_cols=217 Identities=15% Similarity=0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH-------HHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL-------ADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
+..|.-+ ..+++..|...|.+++.+ +|..+.+|.++ +.++...++..+++..+.+.+.+.....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 4444454 589999999999999999 89999999999 8999999999999999999988654322
Q ss_pred CCCCh------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHH
Q 007930 359 PATAP------------EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE 426 (584)
Q Consensus 359 ~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 426 (584)
..... .....+...++.++...|++++|.+.|...+.. .+... ..+.+|.++...+++++
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p~~~-~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GSEHL-VAWMKAVVYGAAERWTD 153 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TCHHH-HHHHHHHHHHHTTCHHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCchH-HHHHHHHHHHHcCCHHH
Confidence 11000 112456677899999999999999999876542 22224 77899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHH
Q 007930 427 ARSSFESAVVKLRASGESKSAF-FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDA 504 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~ 504 (584)
|+.+|+++... .++. ...+++.+|.++..+|++++|+.+|++++.. +..|. ...+++.+|.++..
T Consensus 154 A~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 154 VIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHHHHHHHH
Confidence 99999866542 1222 2458999999999999999999999999742 22255 77899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
+|+.++|...|++++.. +|+ ..+...|.
T Consensus 221 lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 99999999999999998 787 66655553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=126.77 Aligned_cols=170 Identities=14% Similarity=0.035 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|.....+..+|..+...|++++|+..|++++..... ...++..+|.++...|++++|+..+++++...+.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 3667788899999999999999999999999998633 3678999999999999999999999998765432
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
........+..+...++.++|+..+++++.. .|....+++.+|.++...|++++|+..|++++..
T Consensus 184 -------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 184 -------TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp -------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2344556677788899999999999999985 4455789999999999999999999999999999
Q ss_pred HHHHhCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDT--LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 480 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|+. ..++..++.++...|+.++|...|++++..
T Consensus 249 --------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 --------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 7777 789999999999999999999999999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-11 Score=119.31 Aligned_cols=413 Identities=9% Similarity=-0.006 Sum_probs=260.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDT 167 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (584)
..+-+..+++++.. +|.....+..+.......++++.+...|++++..++. .. ..|......
T Consensus 48 ~~d~i~~lE~~l~~---------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-----~~----~lW~~Yi~~ 109 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE---------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-----MA----NIWCMRLSL 109 (679)
T ss_dssp CSCHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-----CH----HHHHHHHHH
Confidence 45566677777764 4556778888888888899999999999999988632 22 236666677
Q ss_pred HHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCH----HH----HHHHHHHHHHHHHH-hCC
Q 007930 168 CSSMGL---LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQF----DE----AENLCKKILEIHRE-HGH 235 (584)
Q Consensus 168 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~~~-~~~ 235 (584)
-...|+ ++.+...|++++.... .+| ....|..........++. ++ ....|++++..... ..
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~- 182 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP- 182 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS-
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc-
Confidence 778888 9999999999988620 002 233444444444444433 33 44677777765433 22
Q ss_pred CCCHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-------------
Q 007930 236 SASLEEAADRRLMALVY---------EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM------------- 293 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~---------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~------------- 293 (584)
.+. .+|....... ..+++.+.+...|.+++.+ + ......++......-.
T Consensus 183 -~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 183 -KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----P-MDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp -SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----C-CSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred -cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----c-cHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 221 2233333222 2345677788888887642 1 1112222211111111
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhc--CCc---------c-------cHHHHHHHHHHHHHHcc-------cHHHHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRG--EDH---------L-------SVASIFIRLADLYYRIG-------KLRESKSYCE 348 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~--~~~---------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 348 (584)
...+|+.|...+.+.-.+...+.. +.. | .....|......-...+ ..+.....|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 112333344443332222111110 000 1 12233333333322221 1344567899
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL-KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (584)
+++.... .....|...+..+...|+.++|. ..|++|+..+|.. ..++...+.+....|++++|
T Consensus 334 ~aL~~~p---------~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 334 QAAQHVC---------FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHTT---------TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcC---------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHH
Confidence 9998863 34688999999999999999997 9999999876654 45667889999999999999
Q ss_pred HHHHHHHHHHHHHc-------CCCC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 428 RSSFESAVVKLRAS-------GESK-------SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 428 ~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
...|++++...... .+.. ......+|...+.+....|+.+.|...|.+|++.. .+....
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~ 470 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChH
Confidence 99999999864210 0100 01245578888888888999999999999998751 111234
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 494 VYSNLAATYDALGR-VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 494 ~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++...|.+....|+ .+.|...|+++++. .|+....+...+......|+.+.|. ..++.++...+
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 56666776666654 89999999999998 4556666777888888999999999 88999887666
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=142.51 Aligned_cols=165 Identities=10% Similarity=-0.005 Sum_probs=128.5
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 416 (584)
.|++++|+..++++++... ....++..+|.++...|++++|+.+|+++++..+.. ..++..+|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGR 65 (568)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 4789999999999998753 336789999999999999999999999999876554 678889999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++++++ +|....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 999999999999999999986 2334688999999999999999999999999999 888889999
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 497 NLAATYDAL---GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 497 ~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|.++..+ |++++|...++++++. +|.....+..++
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 169 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence 999999999 9999999999999997 555444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=105.42 Aligned_cols=110 Identities=18% Similarity=0.348 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
++.+.++.++|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 355677889999999999999999999999998 78889999999999999999999999999999998763
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.......+.++.++|.++..+|++++|+++|++++...+
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 455677788999999999999999999999999998643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=103.54 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+.++.++|..++..|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++......
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 35678899999999999999999999999999 8899999999999999999999999999999998655332
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.++....++.++|.++..+|++++|+ ..++.++...|+
T Consensus 78 -~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~ 115 (127)
T 4gcn_A 78 -DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD 115 (127)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred -hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence 35566789999999999999999999 888888876554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=118.57 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=114.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC------
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS------ 446 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------ 446 (584)
.+......|+++++.+.+.......... +..+..+|..+...|++++|+.+|++++.+.........
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3444455566666665555443332222 556667788888888888888888887775322110000
Q ss_pred --chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 447 --AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 447 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.....++.++|.++...|++++|+.++++++.+ .|....+++.+|.++..+|++++|+.+|++++++
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--- 151 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---
Confidence 001378999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
+|....++..++.++..+|+..++....+..++.
T Consensus 152 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 -----NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -----STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-13 Score=104.32 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35678999999999999999999999875 2223578889999999999999999999999988 6
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
|....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++++|. ..++.++...|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence 777789999999999999999999999999997 6777889999999999999999999 888888876664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=126.37 Aligned_cols=163 Identities=14% Similarity=0.063 Sum_probs=140.9
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC-------CHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA-------SLEEA 242 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a 242 (584)
.++++++|+..+++++.. .|..+.++..+|.++...|++++|+..|++++++.+...... ....+
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 567888899999888887 688899999999999999999999999999999987653211 12235
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++.++|.++...|++++|+..|++++.+ .+....+++++|.++..+|++++|+..|++++++ .|.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPN 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCC
Confidence 77999999999999999999999999886 5667889999999999999999999999999998 688
Q ss_pred HHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRES-KSYCENALRVC 354 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 354 (584)
...++..++.++..+|++++| ...|++++...
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999998 45677666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=109.32 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=100.1
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+....+++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4556788999999999999999999999999999 8888999999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|+...+++++|.++..+|++++|. ..++.++...|+.+.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIANXPE 124 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTTCGG
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCCc
Confidence 8889999999999999999999999 999999988776443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-13 Score=124.97 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=116.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHH
Q 007930 79 RETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKF 158 (584)
Q Consensus 79 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (584)
......|+ |++|+..+++++++.++.. ++.+|..+.++.++|.+|..+|+|++|+.++++++.+.....|+++|.+.
T Consensus 306 ~~~~~~g~-~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a- 382 (433)
T 3qww_A 306 RRAKHYKS-PSELLEICELSQEKMSSVF-EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA- 382 (433)
T ss_dssp HHHTTTSC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-
T ss_pred HHhhhccC-HHHHHHHHHHHHHHhhCcc-ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-
Confidence 33344677 9999999999999999988 77789999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLA 207 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 207 (584)
..++++|.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 7799999999999999999999999999999999999999998877664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-13 Score=102.33 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+..+..+|..+...|++++|+.+|++++.+ .+....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3567789999999999999999999999986 3334689999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|....++..+|.++..+|++++|+..|++++++...... .|....++..++.+...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999433322 27777888888777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=108.62 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 84 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------- 84 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3677889999999999999999999999985 3445688999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|+...+++.+|.+|..+|++++|+.+|++++++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888999999999999999999999999999983
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-11 Score=109.14 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=188.2
Q ss_pred HHcCChh-HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHhcCCCCC
Q 007930 293 MSLCRFD-EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK----------LRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 293 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 361 (584)
...|+++ +|+..+.+++.+ +|....+++..+.+....+. +++++.++..++....+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK----- 106 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----- 106 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-----
Confidence 4567776 789999999988 78999999999999988776 68899999999887543
Q ss_pred ChHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNE--HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKL 438 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~ 438 (584)
...+|...+.++...|+ +++++.++.++++..+.+ ..++...+.+....|. ++++++++.++++.
T Consensus 107 ----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~- 174 (331)
T 3dss_A 107 ----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 174 (331)
T ss_dssp ----CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred ----CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence 46899999999999984 899999999999988777 6788889999999998 69999999999985
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQL--------------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 504 (584)
++....+|..++.++... +.++++++++.+++.+ +|+...+++.+..++..
T Consensus 175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 344567899999988877 5689999999999999 89998999877666655
Q ss_pred c-----------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHhhhhhhhH
Q 007930 505 L-----------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE---TGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 505 ~-----------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
. +.++++++++++++++ .|++..++..++.+... .|..++.. ..+..+++.+|.+..
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAA 310 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGGGHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcchhh
Confidence 4 3567888888888887 78887777666655443 46666766 899999988887655
Q ss_pred H
Q 007930 571 K 571 (584)
Q Consensus 571 ~ 571 (584)
.
T Consensus 311 ~ 311 (331)
T 3dss_A 311 Y 311 (331)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=102.33 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.. .+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence 467889999999999999999999998875433 567788999999999999999999999875 12
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23567889999999999999999999999998 6777789999999999999999999999999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-13 Score=108.38 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=115.4
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC---CC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE---SK-------SAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
...+..+...|..++..|++++|+..|.+++.+...... .. .+....++.++|.++...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345677889999999999999999999999998654321 11 34456899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-HHHHHHHHHHHHhchHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID-DEKERLAELLKETGRARNR 553 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A 553 (584)
+++.+ +|....+++.+|.+|..+|++++|+..|++++.+ +|++. .+...++.+....++..+.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8899999999999999999999999999999999 89888 6677888888877776655
Q ss_pred H
Q 007930 554 K 554 (584)
Q Consensus 554 ~ 554 (584)
.
T Consensus 152 ~ 152 (162)
T 3rkv_A 152 S 152 (162)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-13 Score=124.49 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++.....+..+|+ +++|+..+++++++.++.. ++.++..+.++.++|.+|..+|+|++|+.++++++.+.....++
T Consensus 288 ~~ll~~ie~~~~~g~-~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 288 QESLKKIEELKAHWK-WEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 345555666778898 9999999999999888877 67789999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQA 213 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 213 (584)
++|... ..++++|.+|..+|++++|+.++++++++....+|++||....++.+|+.+....
T Consensus 366 ~Hp~~a-~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 366 SHPVRG-VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999876 6799999999999999999999999999999999999999999999999887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=113.72 Aligned_cols=143 Identities=12% Similarity=-0.012 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..++.+|.++...|++++|+..|++++. . ...++..+|.++...|++++|+.+|++++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~--------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD--------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS--------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC--------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 4567899999999999999999998852 1 2578999999999999999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL--------GTANPDIDDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
|....++..+|.++...|++++|+.+|++++++..... ....|....++.++|.++..+|++++|. ..++.
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 146 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 88889999999999999999999999999998621100 0023456799999999999999999999 99999
Q ss_pred HHhhhhhhhHH
Q 007930 561 LLDSNAYRVKK 571 (584)
Q Consensus 561 ~~~~~~~~~~~ 571 (584)
++...|+....
T Consensus 147 al~~~p~~~~~ 157 (213)
T 1hh8_A 147 ATSMKSEPRHS 157 (213)
T ss_dssp HHTTCCSGGGG
T ss_pred HHHcCcccccc
Confidence 99887755433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-12 Score=103.89 Aligned_cols=132 Identities=18% Similarity=0.083 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 76 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3567789999999999999999999999986 2334688999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK--ERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
.|....++..+|.++...|++++|+.+|++++.+ +|....++ ..++..+...|++++|. ..++....
T Consensus 77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~ 145 (166)
T 1a17_A 77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRS 145 (166)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHH
Confidence 7888899999999999999999999999999998 66666666 44555588999999999 55555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=133.34 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=132.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC-------CCchHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES-------KSAFFGI 451 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~ 451 (584)
..+++++|+..++.++...+.. +..+..+|.++...|++++|+..|++++.+....... ..+....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 4566777777777777665554 7788899999999999999999999999975432100 0112357
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.++|.++..+|++++|+.+|++++++ +|....+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999999 8888999999999999999999999999999998 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
++..++..++.++..+|++++|....++.++
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998866655554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-12 Score=104.26 Aligned_cols=138 Identities=16% Similarity=0.043 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
...+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3457789999999999999999999999999986654 678889999999999999999999999986
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN--LAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+....++..+|.++...|++++|+.+|++++++ .|....++.. ++..+...|++++|+..+.++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 2334678999999999999999999999999998 6666666644 455588899999999999999888
Q ss_pred HHH
Q 007930 522 REE 524 (584)
Q Consensus 522 ~~~ 524 (584)
...
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-12 Score=101.40 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=111.5
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+.....+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 34566788899999999999999999999999974 3334688999999999999999999999999998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 7888899999999999999999999999999998 89999999999999998774
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=120.58 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
+..+..+|..++..|++++|+..|++++... +..+ .++..+|.++...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999874 3333 45899999999999999999999999988
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
+|....+++.+|.++...|++++|+..|++++++.+......... . +..+ .......+. .... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~-~--~~~~--~~~~~~~~~------~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-I--PSAL--RIAKKKRWN------SIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH-H--HHHH--HHHHHHHHH------HHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH-H--HHHH--HHHHHHHHH------HHHH---HH
Confidence 788889999999999999999999999999999999765321111 1 1111 111111111 1100 11
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRV 353 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 353 (584)
....+.. ...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++.+.
T Consensus 133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2223332 33344443 68999999999988876 566677777777777766 7788999999887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=120.65 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
+..+..+|..+...|++++|+..|++++.. .|....++.++|.++...|++++|+..+++++++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 567788999999999999999999999998 68889999999999999999999999999999874
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
+....+++.+|.++...|++++|+..|++++++.++............ .... ++....... ...
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~----~~~~------~~~~~~~~~----~~~ 132 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA----LRIA------KKKRWNSIE----ERR 132 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH----HHHH------HHHHHHHHH----HTC
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH----HHHH------HHHHHHHHH----HHH
Confidence 234678999999999999999999999999999987643222221111 1111 111111111 111
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 007930 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-GRVEDAIEILEYILK 520 (584)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 520 (584)
.. ..+ .+...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++.+
T Consensus 133 ~~-~~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 133 IH-QES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CC-CCC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hh-hhH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11 122 3344445543 68999999999999987 777777777787777766 678888888887765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-10 Score=102.57 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=185.4
Q ss_pred HhccHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 254 AKADYE-SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR----------FDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 254 ~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..|+++ +|+..+.+++. ..|....+++..+.++...+. +++++.++..++.. +|.
T Consensus 41 ~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK 106 (331)
T 3dss_A 41 QAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK 106 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred HcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence 345554 78898888876 478888899999999887776 67888888888877 789
Q ss_pred HHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh
Q 007930 323 VASIFIRLADLYYRIGK--LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE-HEEALKLLQKAMKLLED 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~ 399 (584)
...++...+.++...|+ +++++.++.++++...+ ...+|...+.+....|. ++++++++.+++...+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999994 89999999999998644 36789999999999998 69999999999988766
Q ss_pred CCCCcccHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh--
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV--------------GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL-- 463 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 463 (584)
. ..++..++.++... +.++++++++.+++.+ .|....+|+.+..++...
T Consensus 178 N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 178 N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHSSSC
T ss_pred C-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccC
Confidence 5 56777888888777 5689999999999986 344456776555555544
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 464 ---------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD---ALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 464 ---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+.++++++++++++++ .|+..-++..++.+.. ..|..++...++.+.+++ +|
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Cc
Confidence 4578999999999998 7776555555554433 357788999999999998 89
Q ss_pred hHHHHHHHHHHH
Q 007930 532 DIDDEKERLAEL 543 (584)
Q Consensus 532 ~~~~~~~~l~~~ 543 (584)
....-|..++.-
T Consensus 307 ~r~~~y~d~~~~ 318 (331)
T 3dss_A 307 MRAAYLDDLRSK 318 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 876666555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=99.88 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--C--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC--H--LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+..+.++|..++..|++++|+..|++++++........ + |....+|.++|.++..+|++++|+..|+++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 56788999999999999999999999999932100000 0 0123499999999999999999999999999986655
Q ss_pred hCCCChhHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 526 LGTANPDIDDEK----ERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 526 ~~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
. .-+|+...+| +++|.++..+|++++|+ .+++.+++..|++
T Consensus 91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEER 135 (159)
T ss_dssp C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHC
T ss_pred c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCCc
Confidence 4 4478999999 99999999999999999 9999999888875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-12 Score=97.29 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC----CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE----DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.+..+.+.|..++..|+|++|+..|++++++....... ..+....+|.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35567889999999999999999999999984331000 01224559999999999999999999999999998433
Q ss_pred CCCCCChHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 357 PAPATAPEEIANGL----TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 357 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
. +.-.|+...+| +++|.++..+|++++|+..|++++++.++..+....+..+
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 23335567788 9999999999999999999999999999987766555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=105.27 Aligned_cols=115 Identities=15% Similarity=0.020 Sum_probs=100.8
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.....+..+..+|.++...|++++|+.+|++++.+ .+....++.++|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34556788899999999999999999999999996 3334689999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
+|....+++.+|.+|..+|++++|+.+|++++++ +|+...++...+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 120 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA--------EGNGGSDAMKRG 120 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HSSSCCHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 8888999999999999999999999999999998 565555444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=101.58 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=93.3
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+.....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3444677889999999999999999999999985 3445688999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|+...+++.+|.++..+|++++|+.+|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78888899999999999999999999999999983
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-13 Score=112.70 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=119.9
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc--
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST-- 406 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-- 406 (584)
..+......|+++++.+.+....... ...+..+..+|..+...|++++|+.+|++++.+.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK---------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp -------------CCCSGGGCCHHHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34555566777777777666544332 4457788999999999999999999999999887665322111
Q ss_pred -------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 407 -------IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 407 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
...++.++|.++...|++++|+.++++++.+ .+....+++.+|.++...|++++|+.+|++++++
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1378889999999999999999999999996 2334688999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAI-EILEYI 518 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 518 (584)
.|....++..++.++...++..++. ..|.+.
T Consensus 152 --------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 152 --------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp --------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999988887776 334443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-12 Score=109.94 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...++.+|.++...|++++|+..|++++. . ...++..+|.++...|++++|+.+|++++.+ .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD---P-------HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 45678899999999999999999998841 1 1568889999999999999999999999986 2
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC--------GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
+....++..+|.++...|++++|+..|+++++...... ....|....++..+|.++...|++++|+.+|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33468899999999999999999999999999721100 0013456689999999999999999999999999
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
+++
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 997
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=98.64 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
.+..+..+|..+...|++++|+.+|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678899999999999999999999999999 8888999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
+|....++..+|.++..+|++++|. ..++.++..+
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~ 102 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 102 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhC
Confidence 8999999999999999999999999 9999998887
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-12 Score=98.72 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+.....+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 344677889999999999999999999999985 2233678999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
.|....++..+|.++...|++++|+.++++++.+ +|....++..++.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 7777899999999999999999999999999998 788889999999999999875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=100.72 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=100.0
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+.....++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4556788999999999999999999999999998 8888999999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|+...+++++|.++..+|++++|. ..++.++...|+...
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAAQPA 121 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHTCGG
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCcc
Confidence 8889999999999999999999999 899999988776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-12 Score=97.42 Aligned_cols=100 Identities=21% Similarity=0.094 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.++.+|..+...|++++|+..|+++++. +|....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678999999999999999999999999 8999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+...++..+|.++...|++++|. ..++.++..+|+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~ 118 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQY 118 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCC
Confidence 99999999999999999999999 8999999887754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-11 Score=107.70 Aligned_cols=249 Identities=8% Similarity=-0.034 Sum_probs=189.7
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHhcCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG-KLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 358 (584)
....++..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++.++.+++....+
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-- 121 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-- 121 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--
Confidence 33445555555556666778899999999998 7889999999999999999 599999999999987544
Q ss_pred CCCChHHHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH--------HHH
Q 007930 359 PATAPEEIANGLTEISAIYEAL-N-EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG--------EAR 428 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~ 428 (584)
...+|+..+.++... + +++++++++.++++..+++ ..++...+.+....|.++ +++
T Consensus 122 -------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 122 -------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp -------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 367889999999888 7 8899999999988776655 667788888888888887 899
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 429 SSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR-------INEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
++++++++. ++....+|..++.++...++ ++++++++.+++.+ +|....++..+..+
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999885 34456899999999998887 79999999999999 99999999999999
Q ss_pred HHHcCChHH------------HHH-HHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH-
Q 007930 502 YDALGRVED------------AIE-ILEYILKVREEKLGT-----ANPDIDDEKERLAELLKETGRARNRKGKSLENLL- 562 (584)
Q Consensus 502 ~~~~g~~~~------------A~~-~~~~a~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~- 562 (584)
+...|+... .+. .+....+.+....+. ..+....++.-|+.+|...|+.++|. +.++.+.
T Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~~ 330 (349)
T 3q7a_A 252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLSS 330 (349)
T ss_dssp HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Confidence 998887511 000 011222222222222 12567789999999999999999999 7777776
Q ss_pred hhhhhhh
Q 007930 563 DSNAYRV 569 (584)
Q Consensus 563 ~~~~~~~ 569 (584)
+.+|-+.
T Consensus 331 ~~dpir~ 337 (349)
T 3q7a_A 331 EYDQMRA 337 (349)
T ss_dssp TTCGGGH
T ss_pred hhChHHH
Confidence 4455433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-12 Score=102.53 Aligned_cols=108 Identities=21% Similarity=0.171 Sum_probs=100.9
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+..+..+..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 3456789999999999999999999999999999 8888999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....+++++|.++..+|++++|+ ..++.++..+|+...
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGNGGS 114 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSSSCC
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCchH
Confidence 8999999999999999999999999 999999988887655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=95.43 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
..+.....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 456678899999999999999999999999999886544 567889999999999999999999999985
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
.+....++..+|.++...|++++|+.+++++++. .|....++..++.++...|+++
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence 2233678999999999999999999999999998 7778889999999999998863
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=97.23 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+..+++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 677889999999999999999999999986 2334689999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+|....++..+|.++...|++++|+.+|++++.+....... ....+...+..+........
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN---FGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999984331111 14455556666655544433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-11 Score=93.60 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567789999999999999999999999985 2223578899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
.|....++..+|.++...|++++|..++++++.+ +|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 6777889999999999999999999999999998 7888899999999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-12 Score=105.06 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=110.8
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+|++++++ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 45678999999999999985 3344688999999999999999999999999998 6777889999
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 498 LAAT-YDALGRV--EDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 498 la~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.+ +...|++ ++|+.++++++.+ +|....++..+|.++...|++++|. ..++.++...|+...
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCTTSC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCCCcc
Confidence 9999 8899999 9999999999998 8888999999999999999999999 889999988776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.5e-12 Score=97.97 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
...+.....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 3455678899999999999999999999999999875443 678889999999999999999999999986
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
.+....++..+|.++...|++++|+.+|+++++. .|....++..++.++...|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 2334678999999999999999999999999998 78888899999999988774
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=104.87 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=105.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
+...|++++|+..+++++...+.. ..++..+|.++...|++++|+.+|++++.+. +....++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence 346788999999999999886554 5788899999999999999999999999863 2235788999
Q ss_pred HHH-HHhhCCH--HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 457 GLA-CLQLYRI--NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 457 ~~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.+ +...|++ ++|+.+++++++. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999 8899999 9999999999998 8888899999999999999999999999999997
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-10 Score=102.96 Aligned_cols=257 Identities=10% Similarity=-0.048 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCC
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
...++..+..+....+..++|++.+.+++.+ +|....+++..+.++...| .+++++..+.+++..
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------- 118 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------- 118 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------
Confidence 3444555555666667778999999999886 7888889999999999999 599999999999987
Q ss_pred cccHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH--------HHHHH
Q 007930 320 HLSVASIFIRLADLYYRI-G-KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE--------EALKL 389 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~ 389 (584)
+|....+++..+.++... + ++++++.++.++++...+ ...+|...+.+....|.++ +++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk---------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK---------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT---------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 799999999999999988 7 899999999999876433 3678899999999888887 99999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-------YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++++++..+.+ ..++...+.++...++ ++++++++++++.+ .+....+|+.+..++..
T Consensus 190 ~~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 190 CNEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 99999987766 6788889999988886 78999999999985 34456788888878877
Q ss_pred hCCHHH------------HHH-HHHHHHHHHHHHhCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 463 LYRINE------------ATE-LFEEARGVLEQECGS-----CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 463 ~g~~~~------------A~~-~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.|+... .+. .+....+.+....+. ..+....++..|+.+|...|+.++|.++++...+-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~--- 331 (349)
T 3q7a_A 255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE--- 331 (349)
T ss_dssp TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Confidence 766410 000 011111221111111 12456779999999999999999999888887643
Q ss_pred HhCCCChhHHHHHHHHHH
Q 007930 525 KLGTANPDIDDEKERLAE 542 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~ 542 (584)
.+|-....+...+.
T Consensus 332 ----~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 332 ----YDQMRAGYWEFRRR 345 (349)
T ss_dssp ----TCGGGHHHHHHHHH
T ss_pred ----hChHHHHHHHHHHH
Confidence 37776665554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=115.50 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC--------CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG--------ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999654420 0013446789999999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+|....+++.+|.+|..+|++++|+.+|++++++ +|+...++..++.++..+++.+++...
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999998 888899999999999999999988743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=98.19 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-----C------cccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-----Y------HSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
..+..+...|..+...|++++|+..|.+++.+.+.... . .+....++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45788999999999999999999999999998554211 0 334467899999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcCCh
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL-GVYSNLAATYDALGRV 508 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~ 508 (584)
++.+ .|....+++.+|.++...|++++|+..|++++.+ +|... .+...++.+....++.
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 9996 3445789999999999999999999999999999 78776 5666777766554433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=121.78 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=131.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-------CCHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS-------ASLEEA 242 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~a 242 (584)
..+++++|+..|+.++.. .|..+..+..+|.+++..|++++|+..|++++++.+..... .....+
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 567888899888888877 67889999999999999999999999999999988765310 012235
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++.++|.++..+|++++|+..|++++.+ .+....+++++|.+|..+|++++|+..|++++++ .|.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~ 383 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ 383 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 77999999999999999999999999886 5667889999999999999999999999999998 688
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
...++..++.++...++++++...
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999887653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=95.00 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3568899999999999999999999996 3445789999999999999999999999999999 88
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...++..+|.++...|++++|+..|++++++
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999987
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=96.10 Aligned_cols=103 Identities=15% Similarity=0.015 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------ 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34678999999999999999999999999999 7888899999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+|....++..+|.++..+|++++|. ..++.++...|+
T Consensus 73 --~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 --DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE 109 (137)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred --CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence 8889999999999999999999999 899998887776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-11 Score=91.15 Aligned_cols=113 Identities=20% Similarity=0.111 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+..|++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 466788999999999999999999999985 2234678999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
.|....++..+|.++...|++++|..++++++++ +|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 7788899999999999999999999999999987 788888888887765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-13 Score=128.23 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+..+..+..+|.++...|++++|+++|++++++.+.. ..++.++|.++..+|++++|+.++++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 3445677788899999999999999999999986655 778899999999999999999999999985
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHcCChHHHHHHHH-----
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT--YDALGRVEDAIEILE----- 516 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----- 516 (584)
.+....++.++|.++..+|++++|+.+|++++++ +|+...++..++.+ +...|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3445789999999999999999999999999998 67666788888888 889999999999999
Q ss_pred ------HHHHHHHHHhCCCChh---HHHHHHHHHHHHHHhchHH
Q 007930 517 ------YILKVREEKLGTANPD---IDDEKERLAELLKETGRAR 551 (584)
Q Consensus 517 ------~a~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~ 551 (584)
+++.+.....++.++. .......+...+...+...
T Consensus 140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~ 183 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLH 183 (477)
T ss_dssp TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCC
T ss_pred HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCC
Confidence 6666655555555554 2334444555555444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=90.02 Aligned_cols=118 Identities=21% Similarity=0.246 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 46788999999999999999999999999875443 567789999999999999999999999985
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2223578899999999999999999999999998 7888889999999987765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-11 Score=92.26 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++...... ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chh
Confidence 567789999999999999999999999986 22346789999999999999999999999999984321 111
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
.+....++..+|.++...|++++|..+|++++.+ .| .......++.+....++.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHHHh
Confidence 1122789999999999999999999999999997 55 367777788777766553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-10 Score=100.20 Aligned_cols=259 Identities=8% Similarity=-0.025 Sum_probs=170.9
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.-.+..|+|..++.-..+. .+..+. .....+.++|..+|++.... .+.|. ..+...
T Consensus 21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 3456679998888743321 112222 35566778888889887421 11232 223334
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++..+. ++ |+..+++.+... ... ...+..+|.++...|++++|+.++.+.+...+ ......
T Consensus 77 la~~~~--~~---a~~~l~~l~~~~------~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKDK------QNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTTS------CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhcC------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence 444332 22 666666655331 111 23456899999999999999999998854322 123466
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch----HHHHHHHH--HHHHHhhC--CHHHHHHHHHHHHHHHH
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF----FGIVLNQM--GLACLQLY--RINEATELFEEARGVLE 481 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~~g--~~~~A~~~~~~a~~~~~ 481 (584)
++..++.++..+|+.+.|.+.+++..+. .+. .-.++..+ +++....| ++++|...|+++...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 7778999999999999999999998775 220 12333444 44466556 999999999997665
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA--NPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
.|+.......+. ++..+|++++|...++.+++.....-..+ +|+++.++.+++.+...+|+ +|. .+++
T Consensus 208 ------~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~ 277 (310)
T 3mv2_B 208 ------FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTN 277 (310)
T ss_dssp ------SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHH
T ss_pred ------CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHH
Confidence 555222222233 89999999999999997776632210100 36788999999999999997 776 8899
Q ss_pred HHHhhhhhhhHH
Q 007930 560 NLLDSNAYRVKK 571 (584)
Q Consensus 560 ~~~~~~~~~~~~ 571 (584)
.+...+|+.+..
T Consensus 278 qL~~~~P~hp~i 289 (310)
T 3mv2_B 278 QLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTCCCHHH
T ss_pred HHHHhCCCChHH
Confidence 999888877654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-10 Score=89.04 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.++.+|.++...|++++|+..|++++.... .++....+++.+|.++...|++++|+.+|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 356889999999999999999999988521 23334578999999999999999999999999998 23333
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
....+++.+|.++..+|++++|+.+|++++.. +|+...+......+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~l 119 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--------YPGSDAARVAQERL 119 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 33889999999999999999999999999997 55555444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-11 Score=93.76 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.....+..+|..+...|++++|+.+|++++... +.++....++..+|.++...|++++|+.++++++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 446778899999999999999999999998741 111123788999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|....++..+|.++...|++++|+.+|++++.+ +|....++..++.+...
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISGP 145 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHCS
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHhh
Confidence 7778899999999999999999999999999998 78877888777776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=124.90 Aligned_cols=126 Identities=19% Similarity=0.113 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+..+|.++...|++++|+.+|++++++ .+....++.++|.++..+|++++|+.++++++++ +
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 34456788899999999999999999996 3344789999999999999999999999999998 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHhchHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL--LKETGRARNRKGKSLE 559 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~l~ 559 (584)
|....++.++|.+|..+|++++|+.+|++++++ +|+...++..++.+ +..+|++++|. ..++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~ 134 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDE 134 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 888999999999999999999999999999998 78888888889888 88999999999 6665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-11 Score=91.72 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.++.+|.++...|++++|+..|+++++. .++++....+++.+|.++...|++++|+.+|++++.. +|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p 70 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP 70 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence 4678999999999999999999999998 3444444589999999999999999999999999997 55
Q ss_pred hH---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 532 DI---DDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 532 ~~---~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
+. ..+++.+|.++..+|++++|. ..++.++...|+.....
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPGSDAAR 113 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTSHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCChHHH
Confidence 55 899999999999999999999 89999998887765543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-10 Score=98.09 Aligned_cols=255 Identities=13% Similarity=-0.002 Sum_probs=165.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
-.+..|+|..++.-..+ ... .... .....+.+.|..+|++.... .+.+. ..+...+
T Consensus 22 n~fy~G~yq~~i~e~~~-------~~~-~~~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l 77 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEK-------FSK-VTDN--TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY 77 (310)
T ss_dssp HHHTTTCHHHHTHHHHT-------SSC-CCCH--HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh-------cCc-cchH--HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence 45678999888873221 111 1122 23556677788888876321 12222 2233333
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
+..+. ++ |+..+++.++. .+.....+..+|.++...|++++|+.++.+++...+ ......
T Consensus 78 a~~~~--~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-------~~~~le 137 (310)
T 3mv2_B 78 VQFLD--TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-------AEGTTE 137 (310)
T ss_dssp HHHHT--TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-------STTHHH
T ss_pred HHHhc--cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-------CcCcHH
Confidence 43332 22 56666655432 122244557999999999999999999999865421 124578
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
++..++.++..+|+.+.|.+.+++..+..++.. .......+...-+++....| ++.+|..+|+++.+. .
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~-~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~ 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV-SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------F 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc-ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------C
Confidence 888999999999999999999999877644100 00011223223344466666 999999999997652 3
Q ss_pred ch--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 447 AF--FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC--HLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 447 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+. ....+.+ ++..+|++++|...++.+++........+ .|+.+.++.+++.+...+|+ +|.++++++.+.
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 32 2233333 89999999999999997776632211100 36788899999999999998 888999998887
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=112.84 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--CC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE--SK-------SAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
+..+..+|..+...|++++|+..|++++.+...... .. ......++.++|.++..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678999999999999999999999986321000 00 000013889999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-chHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-GRARNRKGKS 557 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 557 (584)
+ +|....+++++|.+|..+|++++|+.+|++++++ +|++..++..|+.+.... +..+++. ..
T Consensus 259 ~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~ 321 (338)
T 2if4_A 259 E--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EM 321 (338)
T ss_dssp H--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 8 8888999999999999999999999999999998 788899999999995555 4455555 78
Q ss_pred HHHHHhhhhhhh
Q 007930 558 LENLLDSNAYRV 569 (584)
Q Consensus 558 l~~~~~~~~~~~ 569 (584)
++.++...|+..
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888887777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-10 Score=88.41 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+..+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++........ .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-h
Confidence 46788999999999999999999999999886544 567889999999999999999999999998665322 2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
......++..+|.++...|++++|+.+|+++++. .|+ ......++.+....+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHHH
Confidence 2233678999999999999999999999999998 553 567777777766544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=92.02 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=76.7
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
.+|++++|+.+|++++++. ...+....++..+|.++...|++++|+.+|++++++ +|+...++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999841 013567889999999999999999999999999999 888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++...|++++|+.++++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=107.10 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC---------CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP---------GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
.+..+..+|..+...|++++|+..|++++++.+... ...+....++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999655421 12344578899999999999999999999999998
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+ .+....+++.+|.++..+|++++|+..|++++++ .|....++..++.++..+++.+++...
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3445789999999999999999999999999999 888889999999999999888877653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=87.03 Aligned_cols=104 Identities=24% Similarity=0.233 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+..+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 567889999999999999999999999998 7778899999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....++..+|.++...|++++|. ..++.++..+|+...
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANNPQ 107 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTCHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCCCHH
Confidence 7888899999999999999999999 888999988776544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=91.34 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999998 7788899999999999999999999999999997
Q ss_pred Chh--HHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhhhhhh
Q 007930 530 NPD--IDDEKERLAELLKET-GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 530 ~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|. ...++..+|.++... |++++|. ..++.++...|..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHHH 110 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccCC
Confidence 677 889999999999999 9999999 9999998877754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-10 Score=111.54 Aligned_cols=177 Identities=8% Similarity=0.020 Sum_probs=156.2
Q ss_pred Hccc-HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHhCCCCc
Q 007930 336 RIGK-LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE----------HEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 336 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
..|+ .++|++.+.+++.+.. ....+|+..+.++...|+ ++++++++++++...++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP---------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---- 106 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANP---------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---- 106 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred HcCCCCHHHHHHHHHHHHHCc---------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence 3344 4688999999999853 347899999999999998 999999999999988777
Q ss_pred ccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-RINEATELFEEARGVLE 481 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 481 (584)
..+|...+.++...| +++++++++++++++ ++....+|...+.+....| .++++++++.++++.
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 778999999999999 779999999999996 3445689999999999999 999999999999998
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 482 QECGSCHLDTLGVYSNLAATYDAL--------------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+|....+|...+.++..+ +.+++|++++.+++.+ +|++..+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 899999999999999886 5578999999999998 899999999999999998
Q ss_pred chHHH
Q 007930 548 GRARN 552 (584)
Q Consensus 548 g~~~~ 552 (584)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=89.84 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=82.3
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHHHHHHHhCCCC
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI----------NEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.+.+.+++|+..+++++++ .|..+.++.++|.++...+++ ++|+..|++++++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 4567899999999999996 455678999999999998875 5999999999999 9
Q ss_pred CchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 489 LDTLGVYSNLAATYDALG-----------RVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
|+...+++++|.+|..+| ++++|+.+|++|+++ +|++..
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~ 126 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTH 126 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHH
Confidence 999999999999999885 899999999999999 787643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=110.13 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC--Cc--------ccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG--YH--------STIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
.+..+..+|..+...|++++|+.+|++++.+.+.... .. .....++.++|.++..+|++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999999988654310 00 0001378899999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcCChHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY-DALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 514 (584)
.+ .+....+++++|.++..+|++++|+..|++++++ .|....++..++.+. ...+..+++...
T Consensus 258 ~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 258 TE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 2345689999999999999999999999999998 777778889999884 456777888899
Q ss_pred HHHHHHH
Q 007930 515 LEYILKV 521 (584)
Q Consensus 515 ~~~a~~~ 521 (584)
|.+++..
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 9998876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=106.85 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=155.5
Q ss_pred HcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHhcCCCCCC
Q 007930 294 SLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK----------LRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 294 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..|++ ++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++....+
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------ 105 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------ 105 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------
Confidence 44544 5779999999998 89999999999999999998 99999999999988644
Q ss_pred hHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Q 007930 363 PEEIANGLTEISAIYEALN--EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-RYGEARSSFESAVVKLR 439 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 439 (584)
...+|...+.++...| ++++++++++++++..+.. ..+|...+.+....| .++++++++.++++.
T Consensus 106 ---~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 106 ---SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 4689999999999999 7799999999999998776 678889999999999 899999999999873
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQL--------------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
.+....+|..++.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 445568999999998875 6689999999999999 888889999999999998
Q ss_pred CChHH
Q 007930 506 GRVED 510 (584)
Q Consensus 506 g~~~~ 510 (584)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-10 Score=88.69 Aligned_cols=106 Identities=14% Similarity=0.017 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT---LGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.....+..+|..+...|++++|+.+|+++++. .|+. ..++..+|.++...|++++|+.++++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 45688999999999999999999999999987 6665 889999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....+++.+|.++..+|++++|. ..++.++..+|+...
T Consensus 95 -----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 95 -----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPKNKV 134 (148)
T ss_dssp -----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSSCHH
T ss_pred -----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCcHH
Confidence 7888999999999999999999999 899999888776544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=88.83 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=85.0
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHHhCCCCh
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV----------EDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+.+.+++|+..+++++++ +|..+.++.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 457899999999999999 999999999999999999876 4999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhhhhhhhHH
Q 007930 532 DIDDEKERLAELLKETG-----------RARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g-----------~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+...+++++|.+|..+| ++++|+ .+++.+++.+|+....
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPDNTHY 127 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCCCHHH
Confidence 99999999999999885 899999 9999999999876543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=78.57 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
++....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3445788999999999999999999999999998 7788899999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhc
Q 007930 526 LGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+|....++.++|.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 8888999999999998765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=88.38 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=80.6
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|++++|+.+|++++++ +..+|....++..+|.+|..+|++++|+.+|++++++ +|+...++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999986 2224778899999999999999999999999999998 899999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 542 ELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 542 ~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.++..+|++++|. ..++.++...|+...
T Consensus 69 ~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 69 MVLYNLGRYEQGV-ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCCcHH
Confidence 9999999999999 888888887766544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-07 Score=88.60 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=117.3
Q ss_pred hcC-ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 007930 127 SLG-RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205 (584)
Q Consensus 127 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 205 (584)
..| +.+.|...|++++...+. |+++.+...|++++.. .| ....|..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence 356 478888888888877632 6788888888888875 33 3334444
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 206 LAEAHIQAMQ-FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYE----AKADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 206 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
........++ .+.....|+.++....... .+ ..+|......+. ..++.+.+...|++++.. + ...
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s---~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DS---YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHSTTCT--TC---HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--cc---HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence 4444444442 3455667777776532111 11 234544444432 356788888888888752 1 111
Q ss_pred HHHHHHHHHHHH-------------HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc--c-----cH
Q 007930 281 VAAIDVSIGNIY-------------MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI--G-----KL 340 (584)
Q Consensus 281 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g-----~~ 340 (584)
....+......- ...+.+..|...++.+...... .....+......-... | ..
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 122221111111 1123344445445544443221 0112333333322211 0 13
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.....|++++..... ....|...+..+...|+.++|...|++++.. |..
T Consensus 196 ~Rv~~~ye~al~~~p~---------~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYY---------AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 4567789998887532 2678888999999999999999999999988 543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=85.65 Aligned_cols=97 Identities=22% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++. .
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 35568899999999999999999999986 2234578999999999999999999999999998 6
Q ss_pred Cc--hHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 007930 489 LD--TLGVYSNLAATYDAL-GRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 521 (584)
|. ...++..+|.++... |++++|+.++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77 789999999999999 9999999999999876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-10 Score=83.33 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...+..+|.++...|++++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567899999999999999999999999999 8888899999999999999999999999999997
Q ss_pred ChhH------HHHHHHHHHHHHHhchHHHHH
Q 007930 530 NPDI------DDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 530 ~p~~------~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|+. ..++..+|.++..+|++++|.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 6776 889999999999999888876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-06 Score=82.20 Aligned_cols=340 Identities=9% Similarity=0.009 Sum_probs=181.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 163 (584)
.|++...|...|++++..++. |+++.+...|++++... + +. ..|..
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~~-----p-s~----~LW~~ 52 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKKS-----Y-NL----DLWML 52 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTTC-----C-CH----HHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhccC-----C-CH----HHHHH
Confidence 453367788888888877542 77889999999988642 1 11 12333
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 164 LGDTCSSMG-LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI----QAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 164 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
........+ ..+.....|+.++.. .|. ++....+|......+. ..++.+.+..+|++++.. |.. .
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~----vg~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQ----FEN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----S 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHH----STT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----T
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHH----cCC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----h
Confidence 333333333 234455666766664 232 2333455555554432 356788899999999873 211 1
Q ss_pred HHHHHHHHHHHH-------------HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------
Q 007930 239 LEEAADRRLMAL-------------VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-------- 297 (584)
Q Consensus 239 ~~~a~~~~~l~~-------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------- 297 (584)
. ...|..... +-...+.+..|...+..+....... ....+..... +..++
T Consensus 123 ~--~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----s~~~W~~y~~--~E~~~~~~~~~~~ 193 (493)
T 2uy1_A 123 L--SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----SVKNAARLID--LEMENGMKLGGRP 193 (493)
T ss_dssp H--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SHHHHHHHHH--HHHTCTTCCCHHH
T ss_pred H--HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHH--HHhcCCccCcchh
Confidence 1 111111111 1112234445555555544332210 1122322222 22232
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 298 -FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 298 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
.......|++++.. .|.....+...+..+...|+.++|...|++++.. +.. . ..+...+..
T Consensus 194 ~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~----~-----~l~~~y~~~ 255 (493)
T 2uy1_A 194 HESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG----M-----FLSLYYGLV 255 (493)
T ss_dssp HHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS----S-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc----H-----HHHHHHHhh
Confidence 23456788888776 4666889999999999999999999999999998 442 1 112211211
Q ss_pred HHHhcCHHHHHHHHHHHHHH---HH---hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 377 YEALNEHEEALKLLQKAMKL---LE---DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
. +.++. ++...+. .. ...........++...+....+.++.+.|...|+++ .. . ....
T Consensus 256 ~----e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~----~~~~ 319 (493)
T 2uy1_A 256 M----DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E----GVGP 319 (493)
T ss_dssp T----TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S----CCCH
T ss_pred c----chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C----CCCh
Confidence 0 00111 1111111 00 000111112345566666766777788888888877 21 1 1113
Q ss_pred HHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLY-RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 451 ~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.++...+.+....+ +.+.|...|+.+++. .|+....+...+......|+.+.|...|+++
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555565555555 588888888888876 3444445555666667778888887777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-09 Score=79.03 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|+..|++++.. .+....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 577788888773 3345689999999999999999999999999998 888889999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
|++++|+.+|++++++.... ........+...+..+|+.
T Consensus 67 g~~~~A~~~~~~al~~~~~~------~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSR------GDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHhccc
Confidence 99999999999999984321 1234444555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=82.00 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+..|++++.+ .+....++.++|.++...|++++|+..+++++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467789999999999999999999999986 2334688999999999999999999999999998
Q ss_pred CCch------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 488 HLDT------LGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 488 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.|.. ..++..+|.++...|++++|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6666 78999999999999998887765543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-08 Score=70.97 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34667889999999999999999999999986 2234678999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHcC
Q 007930 486 SCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g 506 (584)
+|....++..+|.++...|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 7888899999999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=76.07 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+|+..|+++++. +|....++..+|.++...|++++|+.+|++++.+ +|....++..+|.++..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 578888888887 7888899999999999999999999999999998 888899999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhhhh
Q 007930 548 GRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 548 g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
|++++|. ..++.++...|...
T Consensus 67 g~~~~A~-~~~~~al~~~~~~~ 87 (115)
T 2kat_A 67 GDRAGAR-QAWESGLAAAQSRG 87 (115)
T ss_dssp TCHHHHH-HHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHHHHHhccccc
Confidence 9999999 88888887766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=73.13 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
....+++.+|.++...|++++|+.+|++++++ +|....++..+|.+|...|++++|+..|++++++....
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-- 74 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-- 74 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC--
Confidence 34678999999999999999999999999999 78888899999999999999999999999999984331
Q ss_pred CCChhHHHHHHHHHHHHHHhch
Q 007930 528 TANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
........+..++...+.
T Consensus 75 ----~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 75 ----GTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp ----SCHHHHHHHHHHHHHHHT
T ss_pred ----CchhHHHHHHHHHHHccc
Confidence 123344455555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-08 Score=76.70 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=94.4
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.+++++|+.+|+++.+.. +.. .. +|.+|...+..++|+.+|+++.+. ....+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 357899999999998652 221 22 899999999999999999999874 135789999999
Q ss_pred HHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 460 CLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 460 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
|.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 998 89999999999999875 346799999999999 89999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=72.89 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG-VYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
...|.++...|++++|+..|+++++. +|.... ++..+|.++...|++++|+.+|++++++ +|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 46788999999999999999999998 888888 9999999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
...++.+ +.+.++. ..++.++..+|+
T Consensus 68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence 7766633 5566666 555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=72.81 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+|+...+++.+|.+|...|++++|+.+|++++++ +|+...++..+|.++..+|++++|+ ..++.++...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence 5777889999999999999999999999999998 8999999999999999999999999 888888876665
Q ss_pred hhH
Q 007930 568 RVK 570 (584)
Q Consensus 568 ~~~ 570 (584)
...
T Consensus 74 ~~~ 76 (100)
T 3ma5_A 74 EGT 76 (100)
T ss_dssp HSC
T ss_pred CCc
Confidence 433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=72.52 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=96.3
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.+++++|+.+|+++.+. .++ .+. +|.+|...+..++|+.+|+++.+. ..+.++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-------CCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 35789999999999874 122 223 999999999999999999999885 44689999999
Q ss_pred HHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhh
Q 007930 501 TYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 501 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|.. .+++++|+.+|+++.+. ....+.++||.+|.. .+++++|. ..++.+.+.....
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLGSED 130 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHHCCCHH
Confidence 9999 89999999999999874 346889999999999 89999999 8888888765543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-07 Score=68.64 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI-VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
...|.++...|++++|+..|+++++. .+.... ++..+|.++...|++++|+.+|++++++ +|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 46799999999999999999999985 233456 8999999999999999999999999998 676
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...++.. +.+.+++..|+++...
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 6665533 5566777777777665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-05 Score=69.32 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+...+|.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++..... ..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~r 94 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---KR 94 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 456788888888888887777766555433321 22333444444444433 244566677777888776541 11
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.......-..+|.+|...|+|.+|.+.+.+..+.+... ++...+..++.....+|...+++.++..++.++......+.
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 11112244589999999999999999999999888775 55667788888899999999999999999999998876653
Q ss_pred CCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh
Q 007930 443 ESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV 508 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 508 (584)
.++...+.....-|..+. ..++|.+|..+|-++.+-+... ..+....+...++.+-...++.
T Consensus 174 -~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 174 -CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred -CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 234456677777789999 8999999999999987665322 2333344555566666666664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=62.40 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+.-.+.+|..++..|+|..|+.+|++|++....... .......++..||.++.++|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 345678999999999999999999999987643211 13467789999999999999999999999999998
Q ss_pred ChhHHHHHHHHHH
Q 007930 530 NPDIDDEKERLAE 542 (584)
Q Consensus 530 ~p~~~~~~~~l~~ 542 (584)
.|+...+..+++.
T Consensus 76 ~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 76 DPEHQRANGNLKY 88 (104)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHhhHHH
Confidence 8888888888773
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-05 Score=68.02 Aligned_cols=211 Identities=14% Similarity=0.074 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
+...+|.+|...|++++-.+++......+... .....+.+...+-..+.. -+..+.-++.+.++++-++.. ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence 47889999999999999988887543322211 122333444444444443 344555666777777665432 233
Q ss_pred HHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 323 VAS--IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 323 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
... .-..+|.+|...|+|.+|...+.+.++..++. ++.....+++.....+|...+++.++...+.++.......
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 333 44589999999999999999999999988773 4467788899999999999999999999999999988776
Q ss_pred CCCcccHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 401 PGYHSTIAGIEAQMGVMLY-VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
+.++...+.+...-|.++. ..++|.+|..+|-++..-+...+ .+....++..++.+-...++
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 5556666777778888999 89999999999999876655432 22223444445555555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-05 Score=70.49 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=93.5
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHcCCC
Q 007930 372 EISAIYEAL---NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY----GEARSSFESAVVKLRASGES 444 (584)
Q Consensus 372 ~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~a~~~~~~~~~~ 444 (584)
..|..+... .+..+|+.+|++++++.|+. +.++..++.+|.....+ ......+..++.......
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-- 271 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-- 271 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc--
Confidence 344444443 34689999999999998776 55555566665422111 122233334443222211
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..+..+.++..++..+...|++++|+..+++|+.+ ++. ..++..+|.++...|++++|++.|++|+.+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12334678888888888899999999999999999 665 467889999999999999999999999999
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=7.7e-06 Score=70.07 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHHhCCCChhH-HHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLD--TLGVYSNLAATYDAL-----GRVEDAIEILEYILKVREEKLGTANPDI-DDE 536 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~p~~-~~~ 536 (584)
...+|...+++++++ +|. ...++..||.+|... |+.++|..+|++++++ +|+. ..+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 457899999999999 888 456999999999995 9999999999999999 8875 999
Q ss_pred HHHHHHHHHHh-chHHHHHHHHHHHHHhhhhhh
Q 007930 537 KERLAELLKET-GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 537 ~~~l~~~~~~~-g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++..|..+... |++++|. ..++.++..+|..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~~ 273 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFD-EALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHH-HHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCC
Confidence 99999999885 9999999 9999999776653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-06 Score=59.98 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.-++.+|..++..|+|..|+..|++|+........ .......++..+|.++..+|++++|+.++++++++ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 44568999999999999999999999997654321 23346789999999999999999999999999999 7
Q ss_pred CchHHHHHHHH
Q 007930 489 LDTLGVYSNLA 499 (584)
Q Consensus 489 ~~~~~~~~~la 499 (584)
|+...+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 88777777776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=60.86 Aligned_cols=75 Identities=20% Similarity=0.123 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 488 HLDTLGVYSNLAATYDALGR---VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+|+.+.++..+|.++...++ .++|..++++++++ +|++..++..+|.++...|++++|+ ..++.+++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 56777899999999987766 79999999999999 9999999999999999999999999 999999988
Q ss_pred hhhhhHH
Q 007930 565 NAYRVKK 571 (584)
Q Consensus 565 ~~~~~~~ 571 (584)
+|+.+..
T Consensus 73 ~p~~~~~ 79 (93)
T 3bee_A 73 NDPNLDR 79 (93)
T ss_dssp CCTTCCH
T ss_pred CCCCccH
Confidence 8874443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-05 Score=73.42 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHH
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI---------GKLRESKSYCENALRVC 354 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~ 354 (584)
++..+-..+.+.|+.++|+++|++..+. .......+|+.+-.++... +..++|.+.|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 3455667888999999999999987764 1233445666666666543 44788999988876542
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
-. |+ ..+|+.+...+.+.|++++|.+++++..+. |..+. ..+|..+-..|.+.|+.++|.++|++.
T Consensus 101 ~~-------Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 101 VV-------PN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp CC-------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 22 468889999999999999999999887542 32222 456778889999999999999999987
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+. +- .| ...++..+-..+...|+.++|.+++++..+.
T Consensus 167 ~~~----G~--~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES----EV--VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc----CC--CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 21 12 2468889999999999999999999987664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=7e-06 Score=63.06 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCC-C-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCH-L-DTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
...+.+++|.++...+ +.++++.+++..++. + | ...+++++||..+.++|+|++|..++++++++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 4688999999999988 677999999999887 4 5 56789999999999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~ 543 (584)
+|++..+....-.+
T Consensus 101 ------eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 101 ------EPQNNQAKELERLI 114 (152)
T ss_dssp ------CTTCHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHH
Confidence 88777666544433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.8e-05 Score=68.35 Aligned_cols=148 Identities=9% Similarity=-0.032 Sum_probs=103.9
Q ss_pred HHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---C-CHHHHHHHHHHHHHHHHHHhC
Q 007930 413 QMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---Y-RINEATELFEEARGVLEQECG 485 (584)
Q Consensus 413 ~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..|..+...+ +..+|+.+|++++++ .|..+.++..++.++... + .......-+.+++..... .
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~ 270 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--L 270 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--c
Confidence 4455555443 468999999999996 455667777777766532 1 112222333344432211 1
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
...|..+.++..++..+...|++++|+..+++++.+ +|. ..++..+|.++...|++++|. ..++.++..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL~ 340 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNLR 340 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcC
Confidence 235677889999999999999999999999999999 564 567889999999999999999 8889999888
Q ss_pred hhhhHHHHHhHhhcCCCC
Q 007930 566 AYRVKKEVTKRRSGFGFR 583 (584)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~ 583 (584)
|.... ..-+..+.|.
T Consensus 341 P~~~t---~~~~~~l~F~ 355 (372)
T 3ly7_A 341 PGANT---LYWIENGIFQ 355 (372)
T ss_dssp CSHHH---HHHHHHSSSC
T ss_pred CCcCh---HHHHhCceee
Confidence 85532 3344455554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0001 Score=71.25 Aligned_cols=168 Identities=7% Similarity=-0.042 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKL 396 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~ 396 (584)
.+..+-..+.+.|+.++|+++|++..+..-. |+ ..+|+.+-.++... +..++|.+.|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------LS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------CC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 3455567888999999999999998875322 11 34566666665543 3467888888776542
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
|..+. ..+|..+...|.+.|++++|..+|++.... +- .| ...+|..+-..|...|+.++|.++|++.
T Consensus 100 -----G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI--QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 32222 356788999999999999999999987652 21 12 2467888999999999999999999988
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+. ...|+. .++..|-.+|.+.|+.++|.+++++..+.
T Consensus 167 ~~~------G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES------EVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT------TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc------CCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 764 224444 68999999999999999999999987664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-05 Score=60.93 Aligned_cols=113 Identities=6% Similarity=-0.068 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
...+++....++..|. |+.|+-....++.+.+.-.+.-.......++..+|..++..|+|..|...|+++++..+....
T Consensus 20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4457888899999999 999999999999886543322234456888999999999999999999999999998864321
Q ss_pred Cch----------------hhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 151 SDR----------------ALAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 151 ~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
... .....++.+.++.||...+++++|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111 0112256789999999999999999987654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=57.16 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYR---INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+..+..+|.+++..++ .++|..++++++++ +|+...++..+|..++..|++++|+.+|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788899999976665 79999999999999 9999999999999999999999999999999886
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00031 Score=60.35 Aligned_cols=83 Identities=17% Similarity=-0.005 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCch--HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHHHHHhCCCCCch-HHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAF--FGIVLNQMGLACLQL-----YRINEATELFEEARGVLEQECGSCHLDT-LGV 494 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~ 494 (584)
....|...+++++++ .+. ...++..+|.+|... |+.++|.++|++|+++ +|+. ..+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 457888888999886 233 567999999999985 9999999999999999 8864 889
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDA-LGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~-~g~~~~A~~~~~~a~~~ 521 (584)
++..|..+.. .|++++|..++++++..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 9999999988 59999999999999996
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=59.56 Aligned_cols=111 Identities=14% Similarity=-0.028 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
..+++.-...++..|.|+.|+-....++.+.....+.-.+...+.++..+|..++..++|..|...|+++++..+.+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455667778899999999999999999876655554666677889999999999999999999999999987643211
Q ss_pred C-----------------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 195 S-----------------DPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 195 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
. .+...++.+.++.||...+++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999998764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-05 Score=59.70 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhCCCC-h-hHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG---RVEDAIEILEYILKVREEKLGTAN-P-DIDDEKERL 540 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~-p-~~~~~~~~l 540 (584)
...+.+.|.+.+.. .+...++.+++|.++.+.+ +.++++.++++.++. + | ...+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~L 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHH
Confidence 34455555555543 4456789999999999988 666899999998886 4 7 678999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 541 AELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
|..+.++|++++|. .+++.+++.+|+....
T Consensus 78 Av~~~kl~~Y~~A~-~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 78 AVGNYRLKEYEKAL-KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHTSCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHHHHccCHHHHH-HHHHHHHhcCCCCHHH
Confidence 99999999999999 9999999999976544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0041 Score=58.91 Aligned_cols=219 Identities=12% Similarity=0.027 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 007930 214 MQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM 293 (584)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 293 (584)
|+++.|++.+...-+..+... +......+...+..++...|+++...+++.. +....+..............-+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~--d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQAS--DLASSKEVLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSC--STTTCHHHHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhcc--chhhHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777776644333333222 3334455677888889999999888776642 22222332222222222222222
Q ss_pred -HcCChhHHHHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 294 -SLCRFDEAIFSYQKGLTVFKATRGED---HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 294 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.....+. ......++......... ....+.....|+.++...|++.+|...+.....-... ..+.......
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~ 179 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQF 179 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHH
Confidence 1222221 11112222111111100 1125667788999999999999999999988755433 4456677889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
+.....++...+++.+|...+.++..........+......+...|.++...++|.+|-.+|..+.......+
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999987666555455556677888899999999999999999999988665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.024 Score=53.69 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=139.6
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
.|+++.|++.+....+..+...+......+...+..++...|+++...+++.-.... .+.- ............-+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk----r~ql-k~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK----HGQL-KLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT----TTTS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----hhhh-HHHHHHHHHHHHHH
Confidence 367888888775544444455666777788888999999999998877765432211 1111 11111111111112
Q ss_pred H-HcccHHHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 335 Y-RIGKLRESKSYCENALRVCAKPAPATA--PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 335 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
. .....+. ......+........+.- ....+.....|+.++...|++.+|...+.....-.... .+......++
T Consensus 104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~ 180 (445)
T 4b4t_P 104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFI 180 (445)
T ss_dssp HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHH
T ss_pred HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 1 1222221 222233333322211211 12346677889999999999999999998876433222 3445567788
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.....++...+++.+|...+.++......... .+......+...|.++...++|.+|..+|.++......
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 88999999999999999999998654443322 23345667788899999999999999999999886543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.002 Score=47.48 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHHHHHHhCCCCC-chHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE---ATELFEEARGVLEQECGSCHL-DTLGVYSNL 498 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 498 (584)
....+...|.+.... +. ....+.+++|+++....+... ++.+++..+.. ..| ..-+.++.|
T Consensus 16 ~l~~~~~~y~~e~~~----~~----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA----GS----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH----SC----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----CC----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHH
Confidence 344455555555442 11 235788999999998877665 66655555443 334 567899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
|..+.++|+|++|..+++..+++ .|++..+......
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~--------eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 99999999999999999999999 8877666544433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0038 Score=46.06 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAEL 543 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~ 543 (584)
....+...|.+.... .+....+.+++|+++.+..+... .++.+.+.+.++..++| ...++++.||..
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344455556555554 34556899999999999887765 23444555555555446 788999999999
Q ss_pred HHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 544 LKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 544 ~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+.++|+|++|. .+.+.+|+..|+....
T Consensus 84 ~yklg~Y~~A~-~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 84 NYRLKEYEKAL-KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhhhHHHHH-HHHHHHHHhCCCCHHH
Confidence 99999999999 9999999999876543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0088 Score=45.18 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=84.2
Q ss_pred cccHHHHHHHHHHHHHHcccH------HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 320 HLSVASIFIRLADLYYRIGKL------RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
.|.....+..........|+. ++-++.|++++...+-.. .......+..|...|.. ...++.++|.+.|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 355566666666777777888 888899999988764321 33445667778888866 5679999999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 394 MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+.+... . +.++...|..-.++|+..+|...+.+++.+
T Consensus 87 ~~~hKk-----F--AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 87 RANCKK-----F--AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHCTT-----B--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhHH-----H--HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 997221 1 888889999999999999999999999984
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0072 Score=45.62 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRY------GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+........+.|+. ++-++.|++|+.............+...|...+.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 4444555666666777 77788899888865433333444566677777755 5669999999999999997
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...+.++...|..-.++|+...|.+.+.+++.+
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5566899999999999999999999999999996
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.008 Score=56.72 Aligned_cols=112 Identities=20% Similarity=0.112 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
......++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++......
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~- 200 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK- 200 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-
Confidence 4455667889999999999999999999998776432 3466788888999999999999999999999888765
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
+.++..........|.++...++|.+|..+|-.+....
T Consensus 201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 44555555666777888889999999999998876543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.04 Score=40.75 Aligned_cols=78 Identities=5% Similarity=-0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRI---NEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
..+.+++|+++....+. .+++.+++..+.. +| ...+.++.||..+.++|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----
Confidence 57888899998887654 5677777777665 45 56789999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHH
Q 007930 526 LGTANPDIDDEKERLAEL 543 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~ 543 (584)
.|++..+......+
T Consensus 108 ----eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 ----ERNNKQVGALKSMV 121 (134)
T ss_dssp ----CTTCHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHH
Confidence 78877666544433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.055 Score=40.62 Aligned_cols=75 Identities=5% Similarity=-0.058 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRI---NEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
...+.+++|+++....+. .+++.+++..+.. +| ..-+.++.||..+.++|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--- 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 357888999999887654 4677777776664 34 57789999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHH
Q 007930 525 KLGTANPDIDDEKER 539 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~ 539 (584)
.|++..+...
T Consensus 107 -----eP~n~QA~~L 116 (144)
T 1y8m_A 107 -----ERNNKQVGAL 116 (144)
T ss_dssp -----CCCCHHHHHH
T ss_pred -----CCCcHHHHHH
Confidence 7877665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.29 Score=50.92 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
..+...+...|.+++|++..+.. . .........|++++|.+..+. .....
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-----------~------~~f~~~l~~~~~~~A~~~~~~-------------~~~~~ 682 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-----------D------QKFELALKVGQLTLARDLLTD-------------ESAEM 682 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-----------H------HHHHHHHHHTCHHHHHHHHTT-------------CCCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-----------c------hheehhhhcCCHHHHHHHHHh-------------hCcHh
Confidence 45566677788888887655321 1 112345678899888876432 23446
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENAL 351 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al 351 (584)
.+..+|..+...|+++.|+.+|.++-
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 78899999999999999999998763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.18 Score=37.30 Aligned_cols=75 Identities=8% Similarity=-0.075 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRY---GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
..+.+++|+++.+..+. .+++.+++..+.. .+.....+++.+|..+.+.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence 46677889998887654 4677777776653 33356789999999999999999999999999998
Q ss_pred CCCCCchHHHHHH
Q 007930 485 GSCHLDTLGVYSN 497 (584)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (584)
.|+...+...
T Consensus 108 ---eP~N~QA~~L 117 (134)
T 3o48_A 108 ---ERNNKQVGAL 117 (134)
T ss_dssp ---CTTCHHHHHH
T ss_pred ---CCCCHHHHHH
Confidence 7776555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.018 Score=54.36 Aligned_cols=109 Identities=18% Similarity=0.046 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....++..+|..|...|++++|.+.|.++........ ....++..+..++...+++..+..++.++.......++
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 4556788999999999999999999999887654332 24566888889999999999999999999887777777
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
...........|.++...++|.+|..+|..+...
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 6666677777888899999999999999887654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.13 Score=47.73 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=82.6
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcC--CC-CCc-----------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 419 YVVGRYGEARSSFESAVVKLRASG--ES-KSA-----------FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~--~~-~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
...|+.+.|...+.+++.+++.-. +. ..+ ....+...++..+...|++.+|+..+..++..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----- 200 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----- 200 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345677777777777777653210 00 000 11234556778888999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-CChhHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT-ANPDIDDEKE 538 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~p~~~~~~~ 538 (584)
+|..-..+..+..++...|+..+|+..|+++...+.+.+|- ..|.....+.
T Consensus 201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 88888899999999999999999999999999998888773 3444444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.1 Score=49.19 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHhCCHHHHHHHHHHHH--HHHHH-hCCCCCHHHHHHHHHHHHHHHHhccHHHHH----------HHHHHHHHHHHHcC
Q 007930 210 HIQAMQFDEAENLCKKIL--EIHRE-HGHSASLEEAADRRLMALVYEAKADYESAL----------EHLVLASMVMIANG 276 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~----------~~~~~a~~~~~~~~ 276 (584)
+...+++++|.++....+ +.... +...-+...+.+|+..+.++...|+..... ..+-.+++......
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 456778888888877655 22221 111123345677888888888777765532 22222333322344
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+....+.+++.+-+.|...+.+++|..+..++.- .... ..+...+..++.+|.++..+++|.+|.+++..|+..+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Cccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 5667788889999999999999999999888731 1100 012345777888999999999999999999999876643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.17 Score=50.76 Aligned_cols=123 Identities=12% Similarity=0.010 Sum_probs=83.4
Q ss_pred hcC-HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHc----CCCC------
Q 007930 380 LNE-HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML---YVVGRYGEARSSFESAVVKLRAS----GESK------ 445 (584)
Q Consensus 380 ~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~----~~~~------ 445 (584)
.++ ++.|+.++++.....+.. .++...+.+. ....+--+|+..+.++++..... ....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 577888888866554332 1222222221 12234556788887777543211 1111
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+.....+..-+..+...|+++-|+++.++|+.. .|....+|+.|+.+|..+|+++.|+-.+.-+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0112345666688888999999999999999999 8999999999999999999999999888766
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.25 Score=46.62 Aligned_cols=151 Identities=9% Similarity=-0.014 Sum_probs=63.9
Q ss_pred HHHHcCCChHHHHHHHHHHH--HHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-------HHHHHHHhccC
Q 007930 80 ETISSGDNPNKALDYAIRAS--KSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLE-------RSIEVVDIGKG 150 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~al~~~~~~~~ 150 (584)
.++..++ +++|..+....+ ..........-+.-.+.+|+..+.++...|+......... ..+...+....
T Consensus 145 ~L~d~k~-~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 145 FLWDSKE-LEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHhcccc-HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 4455666 899998887666 3333332223345567778888888877777665432211 22222222222
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
..+.......+..+-..|...+.|+.|..+..++.-. .. ...+...+..++.+|.++..+++|.+|.+++..|+...
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3333444466888899999999999999988877311 00 01234557788899999999999999999999999876
Q ss_pred HHhC
Q 007930 231 REHG 234 (584)
Q Consensus 231 ~~~~ 234 (584)
+...
T Consensus 301 p~~~ 304 (523)
T 4b4t_S 301 PHNS 304 (523)
T ss_dssp SCSS
T ss_pred Ccch
Confidence 6443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.15 Score=53.15 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGL 185 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 185 (584)
.....|++++|.+..+. .+.+ ..|..+|..+...|+++.|+..|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~----------~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD----------ESAE----MKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT----------CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh----------hCcH----hHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34566777777666432 1122 348899999999999999999998863
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.25 Score=50.94 Aligned_cols=105 Identities=8% Similarity=-0.124 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....+++.+-..|.+.|+.++|...|.+..++...-. .+ ...+|+.+-..|.+.|+.++|.++|++..+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------ 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 4456788899999999999999999988765432211 12 2468999999999999999999999998764
Q ss_pred CCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRV-EDAIEILEYILKV 521 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 521 (584)
...|+. .+|..+-.++.+.|+. ++|.+++++..+.
T Consensus 195 G~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GLTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 235554 6888888899999985 7888999888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.68 Score=36.59 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007930 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA 412 (584)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (584)
+....|+++.|.+..++. . ....|..||......|+++-|..+|.++-.. .
T Consensus 14 LAL~lg~l~~A~e~a~~l----~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----N----------DSITWERLIQEALAQGNASLAEMIYQTQHSF---------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----C----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------H
T ss_pred HHHhcCCHHHHHHHHHHh----C----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------H
Confidence 345678899888876543 1 1468899999999999999999999875332 1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.+..+|...|+.++-...-+.+.. .+ . ++....+++..|++++++++|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~----~g----~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQT----RE----D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----TT----C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH----Cc----c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 455667777877554433333322 11 1 222334566788999888888654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.42 Score=49.31 Aligned_cols=104 Identities=7% Similarity=-0.123 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.-..++.+-..|++.|+.++|...|.+....... ...-...+|+.+...|.+.|+.++|.++|++..+. ..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k--G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-------G~ 196 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK--RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-------GL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH--HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc--CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CC
Confidence 3445555555666666666666555543221110 12234455555666666666666666655554332 12
Q ss_pred ccHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKL-RESKSYCENALRV 353 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 353 (584)
.....+|+.+-.++.+.|+. ++|.+++++..+.
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 22334455555555555553 4555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.98 Score=33.99 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRY---GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
..+.+++|+++.+..+. .+++.+++..+.. .+...-.+++.+|..+.+.|+|++|..+.+..+++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~----- 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----
Confidence 56778899999888754 4567777766652 33346789999999999999999999999999998
Q ss_pred CCCCCchHHHHH
Q 007930 485 GSCHLDTLGVYS 496 (584)
Q Consensus 485 ~~~~~~~~~~~~ 496 (584)
.|+...+..
T Consensus 107 ---eP~n~QA~~ 115 (144)
T 1y8m_A 107 ---ERNNKQVGA 115 (144)
T ss_dssp ---CCCCHHHHH
T ss_pred ---CCCcHHHHH
Confidence 676654443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.59 Score=36.98 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGL 370 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 370 (584)
+....|+++.|.+..+.. .....|..+|......|+++-|..+|.++-..
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------- 63 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------- 63 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------
Confidence 445789999988876542 23567899999999999999999999886433
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
..+..+|...|+.+.-....+.+ ... ++ +.....+++..|+++++++.|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA----~~~-g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIA----QTR-ED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH----HHT-TC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----HHC-cc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23445566677765544333322 222 11 112345667889998888888664
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.43 E-value=1.3 Score=34.21 Aligned_cols=99 Identities=20% Similarity=0.056 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----------HHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV----------FKA 314 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~ 314 (584)
-..++.++...|+|..++-++.. ...+...+.-+.||....+|..|+..++..++- .-+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 45677888889999999877752 233455566788999999999999999998732 111
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
..-.+..+.-..+..+|.++...|+.++|+.++.......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 1111234455678889999999999999999999887653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.89 Score=42.08 Aligned_cols=106 Identities=13% Similarity=0.001 Sum_probs=80.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch---h----------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR---A----------LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 186 (584)
..|......|+.+.|...+.+|+.+.....-.+. . .....+...++..+...|++.+++..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445568999999999999987642211111 0 11123456677888899999999999999988
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 187 IQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
. +|..-.++..+..++...|+..+|+..|++..+.....
T Consensus 200 ~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 200 E--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 238 (388)
T ss_dssp H--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 8 78888899999999999999999999999998876543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.30 E-value=2.7 Score=37.31 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
.+..++.=|...++|++|++.+... +..+.+.|++..|.++..-.++.+.+.. .+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~---~~~~ 93 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAG---QRVD 93 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHT---CCCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCC
Confidence 3445555566666777666665544 4445555555555555555555554432 1112
Q ss_pred HHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------
Q 007930 324 ASIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK---------- 392 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------- 392 (584)
......+..++.....- ..=..+.++++....+. +.........+..+|..|...+++.+|..+|--
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 23344444444433321 12244666677665542 222233356778899999999999999877621
Q ss_pred -H-HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC--------C------CchHHH-HHHH
Q 007930 393 -A-MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES--------K------SAFFGI-VLNQ 455 (584)
Q Consensus 393 -a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------~------~~~~~~-~~~~ 455 (584)
. .+..... + ..............|...++...|...+....+........ . .+..+. -+..
T Consensus 172 ~mL~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~ 249 (336)
T 3lpz_A 172 RMEYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFIS 249 (336)
T ss_dssp HHHHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHH
T ss_pred HHHHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHH
Confidence 1 1111111 1 22222223334445788999999999888777655332111 0 011111 1112
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
+-..-++.+. ...|....+.+......+.+.....+..+|..|+....
T Consensus 250 lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 250 MLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp HHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 2223333443 34555555555554443322677889999999987643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.03 E-value=5.7 Score=40.05 Aligned_cols=121 Identities=9% Similarity=-0.019 Sum_probs=81.6
Q ss_pred hCC-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHH----cCC-------
Q 007930 213 AMQ-FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVY---EAKADYESALEHLVLASMVMIA----NGQ------- 277 (584)
Q Consensus 213 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~----~~~------- 277 (584)
.++ ++.|+..+++.....+... ++...+.+. ....+--+|+..+.++++.... ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~---------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD---------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444 5778888888766543221 122222221 1223455677777776643221 111
Q ss_pred -cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 278 -ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 278 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.....+..-+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122345666788888999999999999999998 7999999999999999999999999877665
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.94 E-value=3.1 Score=36.67 Aligned_cols=122 Identities=14% Similarity=-0.046 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
+..+..=|...+++++|++.+.. -+..+.+.|++..|.+...-.++.+.+.. .+...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~--------------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~ 92 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ--------------------GALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDD 92 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH--------------------HHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCH
Confidence 44444455555566666555444 44455556666666666655555555543 22233
Q ss_pred HHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 325 SIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
.....+..++.....- ..=..+.++++....+. +.........+..+|..+...|++.+|..+|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3444455554432211 12356667777776553 22223345678888999999888888887774
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.27 Score=46.82 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..++..+|.+......+..|..+|.+|..+ .|.....+..||.+....|+.-+|.-+|.+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 357788999999999999999999999999 9999999999999999999999999999988753
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.26 E-value=1.5 Score=33.90 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----------H
Q 007930 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI----------Q 188 (584)
Q Consensus 119 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~ 188 (584)
..++..++-.|+|..++-.+... +.. .+.+.-+.||....+|..|+..++..+.- .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l----------NT~----Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL----------NTC----TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC----------CBH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred hhhhhhhhhcchHhHHHHHHHhc----------chH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 36778888899998887766541 111 33666788999999999999999988732 1
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 189 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
-..+--+..+.--.+..+|.++...|+.++|+.++.......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 111111112233467788999999999999999999887653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.52 E-value=14 Score=38.16 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC---cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY---HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+.....-++..+|.++...++ ++..++...+.......+. ......+...+|.++.-.++ +++.+.+...+.-
T Consensus 408 ~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d- 483 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN- 483 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc-
Confidence 344556777788887776654 6777777766543211121 11222344577777776665 3455555555441
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
........+-..+|.++...|+-+-...++..+.+- ..+...-...+|..+...|+.+.+....+..
T Consensus 484 -----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 484 -----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 111111245667888888888877666666555431 2222222344444555678877776666554
Q ss_pred HHHHHHHhCCCChhHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 519 LKVREEKLGTANPDIDD-EKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
... .+|.... +...+|..|...|+. .|++..|..+.+
T Consensus 551 ~~~-------~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~~ 588 (963)
T 4ady_A 551 LAS-------DESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAVS 588 (963)
T ss_dssp HHC-------SCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHHH
T ss_pred HhC-------CCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhcc
Confidence 432 2444433 345567777778875 444356666553
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.15 E-value=1.3 Score=42.22 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++..+|++......+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 45678999999999999999999999997 445678999999999999999999999988875
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.63 E-value=18 Score=39.08 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH-----------------HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVM-----------------IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
.+.+|.++...|++++|..+|.++...+ ............|..+..++...+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999998763211 11111222345677888899999999999999999
Q ss_pred HHHHHHHhhcCCccc-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 308 GLTVFKATRGEDHLS-VASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 308 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
|++.. +.+.+. ....+.++-..+...|+|++|...+...
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 98762 122222 3346778888889999999997776543
|
| >3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis} | Back alignment and structure |
|---|
Probab=89.37 E-value=11 Score=33.32 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMSL--CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
+-++-..+.-.....++.+||.+-... .....++.+|.+++...+..++.. ...-|..+|..+++.+++.+|+..
T Consensus 242 LWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~---HvYPYtylgGy~yR~~~~reAl~~ 318 (472)
T 3re2_A 242 LWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH---HIYPYTYLGGYYYRKKKYYEAIAS 318 (472)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC---CccchhhhhhhhhhcchHHHHHHH
Confidence 333344445555566667777665532 222348999999999988877433 345667788899999999999999
Q ss_pred HHHHHHHHhcC
Q 007930 347 CENALRVCAKP 357 (584)
Q Consensus 347 ~~~al~~~~~~ 357 (584)
+-++-...+..
T Consensus 319 WA~Aa~Vi~~Y 329 (472)
T 3re2_A 319 WVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHc
Confidence 99998887664
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.31 E-value=13 Score=34.23 Aligned_cols=131 Identities=9% Similarity=0.017 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-----------CCcchHHHHHHHH
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN-----------GQENEVAAIDVSI 288 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~l 288 (584)
+++|+..+.-+.....+ ...+ ..+..+.....+.++|++++++........ ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~lv---~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSVV---KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHH---HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHH---HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45666666555544432 2111 112345556778899999888653322211 0123455677788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-..+....
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988887766554455667777778888889999988887777776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.24 E-value=23 Score=36.77 Aligned_cols=175 Identities=12% Similarity=0.028 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC--CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE--DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
...+++.+|.++...+ .++..++...+.-.....++ .......+...||.++...++ +++.+.+...+.-.
T Consensus 412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd---- 484 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND---- 484 (963)
T ss_dssp HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC----
Confidence 4556666777766555 46777666655431100000 012223455677877776665 45556665555421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+......+-..+|.++...|+.+-...++..+.+ . . +..+. -...+|..+...|+.+.+....+.....
T Consensus 485 ---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~-~-~e~vr-R~aalgLGll~~g~~e~~~~li~~L~~~- 553 (963)
T 4ady_A 485 ---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T-Q-HGNIT-RGLAVGLALINYGRQELADDLITKMLAS- 553 (963)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C-S-CHHHH-HHHHHHHHHHTTTCGGGGHHHHHHHHHC-
T ss_pred ---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c-C-cHHHH-HHHHHHHHhhhCCChHHHHHHHHHHHhC-
Confidence 1111224556778888888887655555544432 2 1 11111 1134455555667776666555544331
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++.....+...+|..|...|+...-..++..+..
T Consensus 554 -----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 554 -----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp -----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 11122223345677778888886554446655553
|
| >3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A* | Back alignment and structure |
|---|
Probab=87.35 E-value=16 Score=32.95 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 277 QENEVAAIDVSIGNIYMSL---CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
.-.....++.+||.+-... |+. .++.+|.+++...+..++.. ...-|..+|..+++.+++.+|+..+-++-..
T Consensus 272 hL~rYPmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~---HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 272 HLERYPMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhCchhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccC---CccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 3344455555666554422 222 48899999999988877433 3456777889999999999999999999988
Q ss_pred HhcC
Q 007930 354 CAKP 357 (584)
Q Consensus 354 ~~~~ 357 (584)
.+..
T Consensus 348 i~~Y 351 (550)
T 3u84_A 348 IQDY 351 (550)
T ss_dssp HTTS
T ss_pred HHHc
Confidence 8764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.30 E-value=36 Score=36.82 Aligned_cols=187 Identities=11% Similarity=-0.038 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC--------------CCChHHHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP--------------ATAPEEIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
.....+.+|.++...|++++|..+|+++......... ..........|..+..++...+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444588999999999999999999887432111000 00011123467778889999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
..+.|++.... ++.......+.++=..+...|+|++|...+...-. ......++..+-...+..|+.+.
T Consensus 921 fa~lAi~~~~~--~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 921 FSLLADASKET--DDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCS--CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhccC--CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhh
Confidence 99999876322 22222344677788889999999999777744321 11112445555555555554443
Q ss_pred HHHH--------HHHHHHH-HHHHhC-CCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHH
Q 007930 469 ATEL--------FEEARGV-LEQECG-SCHLDTLGVYSNLAATYDALGRVED-AIEILEYILKVRE 523 (584)
Q Consensus 469 A~~~--------~~~a~~~-~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~ 523 (584)
=..+ .+..+.. .+.... ...|. .|..|=..+...|++.. |...|+.+.++..
T Consensus 990 L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 990 LLNYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hhCCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 3221 1112211 111101 11232 23333334455677665 5567777777644
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.30 E-value=15 Score=32.57 Aligned_cols=254 Identities=10% Similarity=0.017 Sum_probs=141.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 68 PDLGPFLLKLARETISSGDNP---NKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
...+.-.+.+-...+..|+ | =+|.+.++-....+-+ .....+..+.++.-+..+.+.|++..|.++..-.++.
T Consensus 9 ~~~~~~~i~rl~~~I~~G~-y~~~YEAHQ~~RTi~~Ry~~---~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvev 84 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQ-PEEQYEAAQETRLVAARYSK---QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDT 84 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccccHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHH
Confidence 3444555566667778888 8 6777766665554433 2344556677777788888888888888887777776
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLL-DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
..+..-+.+. .....+..++.....- ..=..+.++++....+ .|...-.....+..+|..|...+++.+|..+|
T Consensus 85 y~~~~~~~~~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 85 FRQAGQRVDG----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTCCCCH----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6554322222 2244555555555432 2335566777777665 33333344577788999999999999998876
Q ss_pred HH-----------HHHHHHHhCCCCCHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHc-CC-------------
Q 007930 224 KK-----------ILEIHREHGHSASLEEAADRRLM-ALVYEAKADYESALEHLVLASMVMIAN-GQ------------- 277 (584)
Q Consensus 224 ~~-----------al~~~~~~~~~~~~~~a~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~------------- 277 (584)
-. .+-..-...+ +.....+... -..|...++...|...+..-....... ..
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~---~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~ 236 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDE---SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAEL 236 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCC
T ss_pred HhcCCchHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCccc
Confidence 21 1111111111 2223333333 344677889998888776655544221 11
Q ss_pred --cchHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc
Q 007930 278 --ENEVAA-IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI 337 (584)
Q Consensus 278 --~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 337 (584)
.+.... -+..+...-...+. ...|....+.+......+.+.....+..+|.+|+..
T Consensus 237 ~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 237 RIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp EECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred ccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 011111 11222223334443 345555555554444333225667777778777754
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.11 E-value=21 Score=32.92 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=91.3
Q ss_pred ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC---------ChHHH
Q 007930 130 RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDS---------DPRVA 200 (584)
Q Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~ 200 (584)
..+.-+++|+..+.-+..... +... ...+..+.....+.++|++++++............ .....
T Consensus 54 ~~~~~~~ly~~fi~~f~~kin---~L~l---v~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l 127 (393)
T 4b4t_O 54 STPLRLRLYDNFVSKFYDKIN---QLSV---VKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGIL 127 (393)
T ss_dssp SCCCCHHHHHHHHHHHHHHSC---SHHH---HHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHH
T ss_pred cchHHHHHHHHHHHHHHHhcC---HHHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHH
Confidence 344455667766655543211 1111 11233455567789999999887654433322211 12345
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
.+...++..|...|+.++|..+++++-.......+.+....+..+...+..+...+++..+....-..+...
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 667788999999999999999999999888887766666777888888888999999988777666555443
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.86 E-value=4.6 Score=27.38 Aligned_cols=45 Identities=16% Similarity=-0.044 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 116 (584)
+..+...|...-..|+ +++|+.+|.++++.+-......+++..-.
T Consensus 16 A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~ 60 (86)
T 4a5x_A 16 AATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRC 60 (86)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 4457788888888898 99999999999998877654444444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.74 E-value=7.1 Score=33.23 Aligned_cols=55 Identities=24% Similarity=0.144 Sum_probs=49.4
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+.+.|+.++|++..+..++. +|..+.....|..++.-.|+++.|.+.++.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345679999999999999987 8999999999999999999999999999888766
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.42 E-value=19 Score=31.75 Aligned_cols=144 Identities=10% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
.-.+..-......|+ |=+|.+.++-....+-+.. ...+..+.++.-+..+.+.|++..|.++..-.++...+...+
T Consensus 14 ~r~l~rl~~~I~~G~-yYEAhQ~~Rtl~~Ry~~~~---~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~ 89 (312)
T 2wpv_A 14 AKTLQRFENKIKAGD-YYEAHQTLRTIANRYVRSK---SYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK 89 (312)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 334455556677888 8888887777666554432 344566667777777888888888888777777766554333
Q ss_pred chhhhHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLD-RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
.+. .....+..++.....-+ .=..+.++++....+. +...-.....+..+|..+...|++.+|..+|-
T Consensus 90 ~~~----~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 90 VDD----ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CSH----HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCH----HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 222 22445555554433222 2345666666665553 22222345677788888888888888877764
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=85.09 E-value=6 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..+..+...+..+...|+|++|+++.+++.....+...
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999987655444
|
| >4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=23 Score=32.15 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=62.8
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHH
Q 007930 268 ASMVMIANGQENEVAAIDVSIGNIYMSLC--RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKS 345 (584)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 345 (584)
.+-++-..+.......++.+||.+-...- ....++.+|++++...+..+... ....|..+|-.+.+.+++.+|+.
T Consensus 248 LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~---hvYPYtYlgG~~~R~~~~~eAl~ 324 (489)
T 4gq4_A 248 LLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQ 324 (489)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccC---cccceeecchHHHHhhhHHHHHH
Confidence 33344444555555666677776654322 22357889999999998887443 35667788999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007930 346 YCENALRVCAKPA 358 (584)
Q Consensus 346 ~~~~al~~~~~~~ 358 (584)
.+.++-.......
T Consensus 325 ~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 325 AWADTATVIQDYN 337 (489)
T ss_dssp HHHHHHHHHTTSC
T ss_pred Hhhhhhhhhhhcc
Confidence 9999998877643
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=81.21 E-value=10 Score=25.64 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCc
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQ 110 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~ 110 (584)
+...-.++..+...|. |++||++.++|...+........
T Consensus 15 AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltq 53 (97)
T 2crb_A 15 AHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTE 53 (97)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566788999999999 99999999999988776554333
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=80.54 E-value=26 Score=29.76 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCC
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVC--AKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
.-+..++.+....++|++...+++++.... .. ....-.+.+..+|-. .|....+...+....+ .....
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~e--------Lt~EERnLLSvaYKNvig~rR~swRiissieq-ke~~k 79 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEE--------LTVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESR 79 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCC--------CCHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-Hhhcc
Confidence 445577888889999999999999988853 21 112223333333322 2333334444433222 11111
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHhh-----C-----CHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG---ESKSAFFGIVLNQMGLACLQL-----Y-----RINE 468 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-----g-----~~~~ 468 (584)
+.... ..+..-|. ..=-.+=..++...+.+....- ..........+...|..|.-. | -.+.
T Consensus 80 ~~~~~-----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 153 (260)
T 1o9d_A 80 GNEEH-----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (260)
T ss_dssp TCHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CcHHH-----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 21110 11111111 1111223344455555444321 111112222333345555422 2 2357
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVR 522 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 522 (584)
|...|++|.++......|.||-......+.+..|+. ++++++|....++++.-.
T Consensus 154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 889999999999888888899887777777776665 799999998888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 584 | ||||
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-20 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-19 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-11 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.002 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.002 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 8e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.003 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.004 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.002 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 |
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (225), Expect = 1e-20
Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 16/365 (4%)
Query: 188 QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247
+I+ + + D AE A+ I DEAE L K LE +
Sbjct: 1 EIKDIRE-DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF---YSRIVATSV 56
Query: 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307
+ V K + +L + + + + + I + A + +K
Sbjct: 57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 116
Query: 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367
+ E + A L + +L E + R + + P++
Sbjct: 117 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD----EAEASARSGIEVLSSYQPQQQL 172
Query: 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427
L + A + + A L + LL + + I+ + + G A
Sbjct: 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232
Query: 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487
+ A+ + + A + L A + EE
Sbjct: 233 ANWLRHTAKPEFANNHFLQGQW----RNIARAQILLGEFEPAEIVLEEL--NENARSLRL 286
Query: 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547
D L Y GR DA +L LK+ E E +A+ L++
Sbjct: 287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT--GFISHFVIEGEAMAQQLRQL 344
Query: 548 GRARN 552
+
Sbjct: 345 IQLNT 349
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (190), Expect = 4e-16
Identities = 46/363 (12%), Positives = 118/363 (32%), Gaps = 20/363 (5%)
Query: 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIY 125
++ F A+ I+ G+ P++A A A + G +++ +L +
Sbjct: 7 EDTMHAEFNALRAQVAINDGN-PDEAERLAKLALEELPP----GWFYSRIVATSVLGEVL 61
Query: 126 CSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGL 185
G ++ +++++ ++ AL +Q + + G L + E
Sbjct: 62 HCKGELTRSLALMQQTEQMARQHDVWHYALW---SLIQQSEILFAQGFLQTAWETQEKAF 118
Query: 186 EIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADR 245
++ E + P R A+ + DEAE + +E+ + ++
Sbjct: 119 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ---QQLQCL 175
Query: 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENE-VAAIDVSIGNIYMSLCRFDEAIFS 304
++ A+ D ++A L ++ ++ ++ + + A
Sbjct: 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235
Query: 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364
+ ++ + + +A +G+ ++ E
Sbjct: 236 LRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMS 288
Query: 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY 424
++ L ++ +Y +A ++L A+KL T G+ S M L + +
Sbjct: 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-GFISHFVIEGEAMAQQLRQLIQL 347
Query: 425 GEA 427
Sbjct: 348 NTL 350
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.6 bits (218), Expect = 2e-19
Identities = 61/475 (12%), Positives = 136/475 (28%), Gaps = 89/475 (18%)
Query: 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEE 133
++LA +GD A + ++ + L +L++I+ R +
Sbjct: 2 PMELAHREYQAGDF-EAAERHCMQLWRQEPDN---------TGVLLLLSSIHFQCRRLDR 51
Query: 134 AVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193
+ +I+ A A Y LG+ G L ++ Y L ++ + +
Sbjct: 52 SAHFSTLAIKQ-----NPLLAEA----YSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYE 253
A +
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL------------------ 144
Query: 254 AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313
++ + + A + A ++G ++ + AI ++K +
Sbjct: 145 ----LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---- 196
Query: 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373
+ +I L ++ + + AL + A +
Sbjct: 197 ----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV---------HGNL 243
Query: 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433
+ +Y + A+ ++A++L P + + L G EA + +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC-------NLANALKEKGSVAEAEDCYNT 296
Query: 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493
A+ LN + + I EA L+ +A LE +
Sbjct: 297 ALRLCP--------THADSLNNLANIKREQGNIEEAVRLYRKA---LEV-----FPEFAA 340
Query: 494 VYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548
+SNLA+ G++++A+ + +++ +P D + LKE
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 10/238 (4%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+Q L+ + + + Q +A ++ T + A
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280
+ + ++I G L ++ DY A++ LA +
Sbjct: 98 DSLENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340
+ ++ ++ EA Y K + R S+ F++
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDA 215
Query: 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA--LNEHEEALKLLQKAMKL 396
+ + P A + E +N L + + E K M+L
Sbjct: 216 VAAARTLQEGQSED--PNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 37/264 (14%), Positives = 81/264 (30%), Gaps = 12/264 (4%)
Query: 218 EAENLCKKILEIHREHGHSAS--LEEAADR-RLMALVYEAKADYESALEHLVLASMVMIA 274
AE + S S EEAAD A +Y + + A + + A+
Sbjct: 10 RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK 69
Query: 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334
G E+E V + S A+ S + + +F + + L
Sbjct: 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG-EILE 128
Query: 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
+ ++ E A A+ + + + + ++ EA + K +
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185
Query: 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLN 454
K ++ + G+ A + + + +S+ + F L
Sbjct: 186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF---LK 242
Query: 455 QMGLACLQ--LYRINEATELFEEA 476
+ A + +++E + F+
Sbjct: 243 SLIDAVNEGDSEQLSEHCKEFDNF 266
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 7/198 (3%)
Query: 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYE 259
A+ C A + + + A + K + ++ G+ E +++ +
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED--EAGNTYVEAYKCFKSGGNSV 94
Query: 260 SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGE 318
+A++ L A + GQ A +G I + L + +AI Y+ + +
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--Q 152
Query: 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE 378
FI+ ADL G+ E+ ++ + + + +
Sbjct: 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQL 210
Query: 379 ALNEHEEALKLLQKAMKL 396
A + A + LQ+
Sbjct: 211 AATDAVAAARTLQEGQSE 228
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 2e-08
Identities = 25/248 (10%), Positives = 60/248 (24%), Gaps = 43/248 (17%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ + +S L Y+ L D A E + F
Sbjct: 23 KLGPAEVWTSRQALQD---LYQKMLVT--------DLEYALD--KKVEQDLWNHAFKNQI 69
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280
+ + S L + A Y L+ L +
Sbjct: 70 TTLQGQAKNRANPNRSEVQAN-----LSLFLEAASGFYTQLLQEL------CTVFNVDLP 118
Query: 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340
+G I + + + L D+ +
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCS----------YICQHCLVHLGDIARYRNQT 168
Query: 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400
+++SY +A ++ P+ ++A + + +H + +++ +
Sbjct: 169 SQAESYYRHAAQL--VPSNGQPYNQLAI-------LASSKGDHLTTIFYYCRSIAVKFPF 219
Query: 401 PGYHSTIA 408
P + +
Sbjct: 220 PAASTNLQ 227
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.002
Identities = 19/213 (8%), Positives = 56/213 (26%), Gaps = 18/213 (8%)
Query: 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231
L+ + Y L+ + D L +
Sbjct: 93 LFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151
Query: 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNI 291
+H + + + A + A+ ++ +NGQ + +
Sbjct: 152 QHCLVH----------LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN------QLAIL 195
Query: 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL 351
S IF Y + + V K ++ + + + + + +
Sbjct: 196 ASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254
Query: 352 RVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
+ + + E+++ ++ ++ L +
Sbjct: 255 KFHGHVYLSKSLEKLSPLREKLEEQFKELLFQK 287
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 30/323 (9%), Positives = 89/323 (27%), Gaps = 35/323 (10%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
G AV + E +++ + A + LG T + ++
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQ-----QDPKHMEA----WQYLGTTQAENEQELLAISA 75
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240
LE++ + + +A + + + + A
Sbjct: 76 LRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE 300
+ + + + + E + A + + + +G ++ +D+
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVLFNLSGEYDK 190
Query: 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360
A+ + + ++ +L + E+ + AL + +
Sbjct: 191 AVDCFTA--------ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242
Query: 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ----MGV 416
+ L H EA++ +A+ + + G + + +
Sbjct: 243 ---------RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293
Query: 417 MLYVVGRYGEARSSFESAVVKLR 439
L ++G+ ++ + L
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLL 316
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 35/326 (10%), Positives = 77/326 (23%), Gaps = 34/326 (10%)
Query: 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHL 265
+Q A L + ++ +H + + + A+ L
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA--------WQYLGTTQAENEQELLAISAL 76
Query: 266 VLA-SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324
+ +A + + + + + +
Sbjct: 77 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136
Query: 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384
R+ E K A+R+ +
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV---------------- 180
Query: 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444
L + + + ++ +G + E AV R + E
Sbjct: 181 -----LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235
Query: 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD---TLGVYSNLAAT 501
+ + +G++C+ L EA E F EA + + G + ++S L
Sbjct: 236 QPGYIRS-RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294
Query: 502 YDALGRVEDAIEILEYILKVREEKLG 527
LG+ + L G
Sbjct: 295 LSMLGQSDAYGAADARDLSTLLTMFG 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 32/303 (10%), Positives = 67/303 (22%), Gaps = 37/303 (12%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
G + A+ ++ + + + L + + S
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAV--------QQDPKHMEAWQYLGTTQAENEQELLAISALR 77
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
L + A ++ T S +A + L+ L+
Sbjct: 78 RCLELKPDNQTALMALAVSF--TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 135
Query: 409 GIEAQM-GVMLYVVGRYGEARSSFESAVV--------------------KLRASGESKSA 447
++ L + E + F +AV
Sbjct: 136 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 195
Query: 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507
+ + A E + + NL + LG
Sbjct: 196 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 255
Query: 508 VEDAIEILEYILKVREEKLGTANPDI---DDEKERLAELLKETGR---ARNRKGKSLENL 561
+A+E L ++ + G ++ L L G+ + L L
Sbjct: 256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 315
Query: 562 LDS 564
L
Sbjct: 316 LTM 318
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.004
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVV--DIGKGSDRALAKFSGYMQLGDTCSSMG 172
+ S + L +LG EAV ++ + G + + + L S +G
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299
Query: 173 LLDRSVWCYESGLEIQIEALG 193
D L + G
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 1e-06
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 26/167 (15%)
Query: 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297
SL EA ++ K D++ AL+ + ++ + I +IG +Y L
Sbjct: 1 SLVEAISLWNEGVLAADKKDWKGALDAF---------SAVQDPHSRICFNIGCMYTILKN 51
Query: 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357
EA ++ + + +A + + LYY+ K + + AL +
Sbjct: 52 MTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI-QLRG 102
Query: 358 APATAPEEIA--------NGLTEISAIYEALNEHEEALKLLQKAMKL 396
+ + L I+ +Y E ++A + L A +
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 8e-05
Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 32/184 (17%)
Query: 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLD 175
+SL + ++ A+ + + +G + + +
Sbjct: 6 ISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTILKNMT 53
Query: 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH-- 233
+ + + +A + Q ++D A K+ L R +
Sbjct: 54 EAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 105
Query: 234 ------GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287
G L +A +Y K +++ A E L LA + E + ID +
Sbjct: 106 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA----TSMKSEPRHSKIDKA 161
Query: 288 IGNI 291
+ +
Sbjct: 162 MECV 165
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.002
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 15/166 (9%)
Query: 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
+ + + AL + +G M ++ EA +F ++
Sbjct: 14 LAADKKDWKGALDAFSAV---QDPHSRICF-------NIGCMYTILKNMTEAEKAFTRSI 63
Query: 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH-LDTLGV 494
G++ Q L + + EA + + + G L V
Sbjct: 64 -NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 122
Query: 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540
N+A Y + A E L ++ E + ID E +
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEP---RHSKIDKAMECV 165
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347
+GN FD A+ Y K E + + A +Y+ G + + C
Sbjct: 10 LGNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396
E A+ V +IA I Y ++++A+ K++
Sbjct: 62 EKAIEVG--RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 8e-04
Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 34/160 (21%)
Query: 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299
++A + + K D+++AL+H A + N + +Y ++
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYN 55
Query: 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359
+ +K + V + ED+ +A + R+ + Y++ K +++ + +L
Sbjct: 56 KCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-------- 106
Query: 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
A + + LK Q+A K+L++
Sbjct: 107 -------------------AEHRTPDVLKKCQQAEKILKE 127
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 2/136 (1%)
Query: 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339
E AAI G +Y ++ +A+ Y K ++ + G + L + +
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399
V GL +NE E A +K +++
Sbjct: 73 CYLKLREYTK--AVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130
Query: 400 TPGYHSTIAGIEAQMG 415
I + +
Sbjct: 131 NKAARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 36.5 bits (83), Expect = 0.003
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVM--IANGQENEVAAIDVSIGNIYMSLC 296
LE+AA + VY Y A+ + E E A + + +++L
Sbjct: 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71
Query: 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356
+ Y K + G D + R + + + +K E L V
Sbjct: 72 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--N 128
Query: 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394
P A +I + EH E + M
Sbjct: 129 PQNKAARLQIFM-------CQKKAKEHNERDRRTYANM 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV-ASIFIRLADLYYRIGKLRESKSY 346
IGN + ++ AI Y K L + +R + A + IG + S
Sbjct: 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406
+ A+ C + A ++ L E+++AL L+KA ++ + +
Sbjct: 93 WQGAVDSCLEALEIDPSNTKALYRRAQ--GWQGLKEYDQALADLKKAQEIAPEDKAIQAE 150
Query: 407 IAGIEAQMG 415
+ ++ ++
Sbjct: 151 LLKVKQKIK 159
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
GN +S+ D+A+ Y + + + A+ + + +
Sbjct: 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
K A E LN EEA + ++ +K + P +
Sbjct: 70 WGKGYSRKAA-----------------ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
Query: 409 GIEAQ 413
+EA+
Sbjct: 113 NMEAR 117
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 2/127 (1%)
Query: 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348
G +Y ++ +A+ Y+K ++ + + + +
Sbjct: 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 79
Query: 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408
+ + GL+ + A+N+ E A QK ++L + + +A
Sbjct: 80 A--AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 137
Query: 409 GIEAQMG 415
+ ++
Sbjct: 138 VCQQRIR 144
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (85), Expect = 0.002
Identities = 10/64 (15%), Positives = 27/64 (42%)
Query: 184 GLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAA 243
G++I + +++ R E YL + ++ A+ + E R + +L+
Sbjct: 57 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 116
Query: 244 DRRL 247
+ ++
Sbjct: 117 EDKI 120
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.002
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 30/174 (17%)
Query: 378 EALNE--HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435
AL+E ++AL+LL +A+K S +L + G + A
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRS-------SFIELLCIDGDFERADEQLMQ-- 55
Query: 436 VKLRASGESKSAFFGIVLNQMGLACLQLYR-INEATELFEEARGVLEQECGSCHLDTLGV 494
I L L R + +A + ++ + L
Sbjct: 56 --------------SIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTK 101
Query: 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP----DIDDEKERLAELL 544
E E+ I ++R+EK AN D+ D +RL +
Sbjct: 102 SLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYI 155
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 36.9 bits (85), Expect = 0.004
Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 24/173 (13%)
Query: 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
S G L +++ ++ P+ A E F+ A+ + +++
Sbjct: 8 SEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289
E+ AS + + +A + + A ++ + +
Sbjct: 60 FPEYLPGAS--------QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS-----F 106
Query: 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342
N+ M +++ + + + +G + F + D+ R+G E
Sbjct: 107 NLSMVSQDYEQVSELALQ-IEELRQEKGFLANDTS--FSDVRDIDDRLGGYIE 156
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.1 bits (87), Expect = 0.002
Identities = 26/266 (9%), Positives = 58/266 (21%), Gaps = 44/266 (16%)
Query: 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222
S L+ + ES L + +P+ T + + + + A L
Sbjct: 78 TEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 223 --CKKILEI-----HREHGHSASLEEAADRRLMALVYEAKA-----DYESALEHLVLASM 270
C + LE H +AA L + S+ +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189
Query: 271 VM-------IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323
+ V ++ + D++ + Y +
Sbjct: 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR--------WLLGRAEP 241
Query: 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383
+ + ES + + + + L
Sbjct: 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT---------IILLMRALDPLLYE 292
Query: 384 EEALKLLQKAMKLLEDTPGYHSTIAG 409
+E L+ + Y +
Sbjct: 293 KETLQYFSTLKAVDPMRAAYLDDLRS 318
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (86), Expect = 0.002
Identities = 22/197 (11%), Positives = 49/197 (24%), Gaps = 5/197 (2%)
Query: 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRS 177
L+ +Y SLG A +++ + L + D
Sbjct: 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237
+ + + R L + + E
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159
Query: 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS-----IGNIY 292
L++ ++ ++ + A+ +N A +S +G Y
Sbjct: 160 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 219
Query: 293 MSLCRFDEAIFSYQKGL 309
+SL D A ++ +
Sbjct: 220 LSLGDLDSATALFKLAV 236
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 584 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.95 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.42 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.34 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.07 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.86 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.51 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 93.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.41 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 92.01 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 91.19 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 90.15 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 89.9 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 84.93 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 84.45 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 82.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-36 Score=285.64 Aligned_cols=387 Identities=18% Similarity=0.206 Sum_probs=334.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR 153 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 153 (584)
++.+|..+++.|+ +++|+..++++++. +|....++..+|.+|...|++++|+..|+++++.. +..
T Consensus 2 ll~la~~~~~~G~-~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~ 66 (388)
T d1w3ba_ 2 PMELAHREYQAGD-FEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL 66 (388)
T ss_dssp CCTHHHHHHHHTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred hHHHHHHHHHcCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence 3568999999999 99999999999986 34457788999999999999999999999999875 333
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 154 ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
+ .++..+|.++...|++++|+..+..++.. .+.........+......+....+..............
T Consensus 67 ~----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (388)
T d1w3ba_ 67 A----EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134 (388)
T ss_dssp H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred H----HHHHHHHHHhhhhcccccccccccccccc--------cccccccccccccccccccccccccccccccccccccc
Confidence 3 45899999999999999999999999887 56666677777778888888887777766655443222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 234 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
. ......+......+....+...+.+.+.. .+....++..+|.++...|++++|...++++++.
T Consensus 135 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 198 (388)
T d1w3ba_ 135 Y--------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-- 198 (388)
T ss_dssp T--------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred c--------cccccccccccccchhhhhHHHHHHhhcc------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--
Confidence 2 23566777788888899998888877653 5667788899999999999999999999999988
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 314 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
+|....++..+|.++...|++++|+..++++...... ....+..+|.++...|++++|+..|+++
T Consensus 199 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 263 (388)
T d1w3ba_ 199 ------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---------HAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6888899999999999999999999999999887532 3577889999999999999999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 007930 394 MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELF 473 (584)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (584)
+++.+.. ..++..+|.++...|++++|+..++.++.. .+.....+..+|.++...|++++|+.+|
T Consensus 264 l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 328 (388)
T d1w3ba_ 264 IELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence 9876554 678889999999999999999999999875 3344678899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 474 EEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 474 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
++++++ +|+...++..+|.+|..+|++++|+.+|++++++ +|+...++.+||.+|.++||
T Consensus 329 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence 999998 8888999999999999999999999999999998 89999999999999999885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.3e-34 Score=269.42 Aligned_cols=383 Identities=17% Similarity=0.201 Sum_probs=325.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.+|..+++.|+|++|+..|+++++.. ++++ .++..+|.++...|++++|+..|+++++. +|..
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~ 66 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence 57899999999999999999999874 3333 35889999999999999999999999998 7888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..++..+|.++...|++++|+..+..++...+... ......+......+....+.......... ..
T Consensus 67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 132 (388)
T d1w3ba_ 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--------DGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHhhhhccccccccccccccccccccc--------ccccccccccccccccccccccccccccc------cc
Confidence 89999999999999999999999999988654332 23555566666666666666655543332 22
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
.........+......+....+...+.+.+.. .|....++..+|.++...|++++|...+++++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---- 200 (388)
T d1w3ba_ 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---- 200 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----
T ss_pred ccccccccccccccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc----
Confidence 33344566777888889999999999988877 688889999999999999999999999999998752
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
....++..+|.++...|++++|+..++++....+.. ...+..+|.++...|++++|+..|++++++
T Consensus 201 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 266 (388)
T d1w3ba_ 201 -----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-- 266 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred -----ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 346789999999999999999999999998875544 567788999999999999999999999984
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++
T Consensus 267 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 332 (388)
T d1w3ba_ 267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445788999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH--HHHhHhhcCCC
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK--EVTKRRSGFGF 582 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~ 582 (584)
++ +|+...++.++|.++..+|++++|+ ..++.+++.+|+.... .+...+..+||
T Consensus 333 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 87 8999999999999999999999999 9999999988876543 46667777765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.1e-24 Score=200.61 Aligned_cols=353 Identities=15% Similarity=0.050 Sum_probs=292.4
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 276 (584)
+..++.....|.++...|++++|+.+++++++..+.. +....+.++..+|.++...|++++|+..+++++......+
T Consensus 9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~---~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC---CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 4456677778999999999999999999999876543 3344566789999999999999999999999999998888
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+.+.....+..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.+...+.+++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 88889999999999999999999999999999999888776667778888999999999999999999999999998755
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
. .......++..++..+...+++.++...+.++................++..++.++...|++++|..++++++.
T Consensus 166 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 241 (366)
T d1hz4a_ 166 Y----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241 (366)
T ss_dssp S----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred h----hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2 234456788889999999999999999999999998887556666677888899999999999999999998876
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILE 516 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 516 (584)
. ....++.....+.++|.++...|++++|..++++++...+.... .+....++..+|.+|...|++++|.+.++
T Consensus 242 ~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 242 P----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp C----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred h----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 22234445677888999999999999999999999998776543 67788899999999999999999999999
Q ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 517 YILKVREEKLGT-ANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 517 ~a~~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+++++..+..-. ........+..+...+...++.+++.....+.++
T Consensus 316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll 362 (366)
T d1hz4a_ 316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 362 (366)
T ss_dssp HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999987653211 0111233455555666677777777644444444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.4e-23 Score=192.67 Aligned_cols=348 Identities=12% Similarity=0.007 Sum_probs=283.3
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
++..++.....|.++...|++++|+.+++++++..+. ......+.++..+|.++...|++++|+..|++++.+...
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~----~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~ 83 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 83 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3445677778899999999999999999999987532 222223456889999999999999999999999998766
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
. .+.+....++..++.++...|++..+...+.+++.+.+..........+.++..+|.++...|+++.+...+.++..
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 84 H--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161 (366)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 3 34566778899999999999999999999999999999887777777888899999999999999999999999887
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.....+. ......+...+..+...+++.++...+.++........ ...+....++..++.++...|++++|..+++++
T Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 162 VLSSYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239 (366)
T ss_dssp HTTTSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred Hhhhhhh-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6554443 34567788899999999999999999999998876643 224556677888999999999999999999988
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+... ...++.....+.++|.++...|++++|..++++++...... +..+....++..+|.+|...|++++|+..
T Consensus 240 ~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 240 AKPE-----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp CCCC-----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhc-----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7664 22345556778899999999999999999999999998876 66777788999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCc-hHHHHHHHHHHHHHhhCCHHHHHHH
Q 007930 431 FESAVVKLRASGESKSA-FFGIVLNQMGLACLQLYRINEATEL 472 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (584)
+++++++....+..... .....+..+...+...++.+++...
T Consensus 314 l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 314 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999988776542110 1123344455555666777776553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.6e-24 Score=193.44 Aligned_cols=275 Identities=16% Similarity=0.115 Sum_probs=219.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
.+..|..+...|++++|+..|+++++ ..|....++..+|.++...|++++|+..+.+++++ .|...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~ 87 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQ------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQ 87 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccccc
Confidence 56889999999999999999999987 47778889999999999999999999999999998 68888
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN------GLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
..+..+|.++...|++++|+..+++++...+............. ........+...+.+.+|...+.+++.+.+
T Consensus 88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p 167 (323)
T d1fcha_ 88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 167 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987543210000000011 111222344566788999999999998765
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.... ..++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|+++++
T Consensus 168 ~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 168 TSID-----PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp TSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccc-----cccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 5422 567789999999999999999999999985 334568999999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG---TANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+ +|+...++..+|.+|..+|++++|+.+|++++++.....+ ........++..++.++..+|+.+.+.
T Consensus 235 ~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 235 L--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred H--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8 8888999999999999999999999999999998543222 111222345566777887788776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-23 Score=191.59 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=223.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
.+..|..++..|++++|+..|+++++.. +.++ .++..+|.++...|++++|+..|.+++++ +|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p 84 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM----EAWQYLGTTQAENEQELLAISALRRCLEL--------KP 84 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cc
Confidence 3578999999999999999999999764 3333 45999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH-HH------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE-EA------ADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~a------~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
.....+..+|.++...|++++|+..+++++...+......... .. .........+...+.+.+|+..+.+++.
T Consensus 85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999998766532211000 00 0111222344566788899999988876
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.. .......++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|+++
T Consensus 165 ~~----p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 232 (323)
T d1fcha_ 165 LD----PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 232 (323)
T ss_dssp HS----TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh----hcccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHH
Confidence 41 12233567889999999999999999999999988 6888899999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc----ccHHHHHHHHHHHHHHhccHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH----STIAGIEAQMGVMLYVVGRYGE 426 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 426 (584)
+++.+ ....++..+|.++...|++++|+.+|++++++.++..+.. .....++..++.++...|+.+.
T Consensus 233 l~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 233 LELQP---------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp HHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHhh---------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 98842 3367899999999999999999999999999998875421 2223456677888888888877
Q ss_pred HHHHHHHHHHH
Q 007930 427 ARSSFESAVVK 437 (584)
Q Consensus 427 A~~~~~~a~~~ 437 (584)
+.....+.+..
T Consensus 304 ~~~~~~~~l~~ 314 (323)
T d1fcha_ 304 YGAADARDLST 314 (323)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHHHhCHHH
Confidence 76666555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.3e-19 Score=161.38 Aligned_cols=262 Identities=9% Similarity=-0.011 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhh
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-FDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 316 (584)
.+..+.++..+|.++...+.+++|+..+++++.+ .|....++.++|.++...|+ +++|+.++++++++
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----- 107 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----- 107 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----
Confidence 4566788999999999999999999999999996 88889999999999999874 89999999999998
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+|....++..+|.++..+|++++|+.++.+++++..+ ...+|.++|.++...|++++|+.++++++++
T Consensus 108 ---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~---------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 108 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc---------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998633 3689999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGR------YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEAT 470 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (584)
.+.. ..++.++|.++...+. +++|+..+.+++.+ .|....++..++.++... ..+++.
T Consensus 176 ~p~n-------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~-~~~~~~ 239 (315)
T d2h6fa1 176 DVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR-GLSKYP 239 (315)
T ss_dssp CTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT-CGGGCH
T ss_pred CCcc-------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhc-ChHHHH
Confidence 7766 6788899999887765 67899999999986 344567888888886554 468888
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL--GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
..+++++++ .+ .+....++..++.+|... ++.+.+...+.+++.++.......+|.....|..++..+
T Consensus 240 ~~~~~~~~l-----~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 240 NLLNQLLDL-----QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHH-----TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CC-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999988887 22 223455677788887554 778889999999998877665555676655555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.2e-19 Score=161.61 Aligned_cols=262 Identities=6% Similarity=-0.016 Sum_probs=215.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA-DYESALEHLVLASMVMIA 274 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~ 274 (584)
+|....++..+|.++...+.+++|+..+++++++.|.+. .+|+..|.++...| ++++|+..+++++..
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~--------~a~~~r~~~l~~l~~~~~eal~~~~~al~~--- 107 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 107 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh--------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence 578899999999999999999999999999999876554 56999999999987 599999999999886
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
+|....++.++|.++..+|++++|+..+.+++++ +|....++.++|.++...|++++|+.++++++++.
T Consensus 108 ---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 108 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred ---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 7888999999999999999999999999999998 78999999999999999999999999999999985
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNE------HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEAR 428 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 428 (584)
. ....+|.++|.++...+. +++|+..+.+++.+.|.. ..++..++.++...| ..++.
T Consensus 177 p---------~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-------~~~~~~l~~ll~~~~-~~~~~ 239 (315)
T d2h6fa1 177 V---------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRG-LSKYP 239 (315)
T ss_dssp T---------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTTC-GGGCH
T ss_pred C---------ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-------hHHHHHHHHHHHhcC-hHHHH
Confidence 3 336789999999887765 689999999999998766 567778888766544 58888
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 429 SSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
..+++++++... . ....++..++.++.. .++.+.+...++++++++.......+|.....|..++..+
T Consensus 240 ~~~~~~~~l~~~----~--~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 240 NLLNQLLDLQPS----H--SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHHTTT----C--CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----c--CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888775221 1 123456667777654 3677788888999988877655444565555666666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.7e-18 Score=154.39 Aligned_cols=227 Identities=12% Similarity=0.039 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
|...|.+|...|++++|++.|.+++.+....++.+..+.++.++|.+|...|++++|+.++++++++..... +.....
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~ 117 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA 117 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchhHH
Confidence 455678889999999999999999999999999999999999999999999999999999999999988764 345667
Q ss_pred HHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 325 SIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 325 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.++..+|.++.. .|++++|+.++++++++... ...++....++.++|.++..+|++++|+..|++++...+.....
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~---~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 194 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh---cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence 888999999865 69999999999999999876 34566778899999999999999999999999999988776555
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARGV 479 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~ 479 (584)
.......+...+.++...|++..|...+++++++....... .....+..+..++.. .+.+++|+..|.++.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s---re~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 66667778889999999999999999999988764332211 112345556666554 35688888888765544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.2e-21 Score=176.00 Aligned_cols=281 Identities=10% Similarity=-0.074 Sum_probs=218.0
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 212 QAMQFDEAENLCKKILEIHREHGHSA--SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
..+..++|+.+++++++..|...... .......+...+..+...|++++|+.++++++.. +|....++..+|
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~pk~~~~~~~~~ 114 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPKSYGTWHHRC 114 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------CCCcHHHHHHhh
Confidence 33344788888888887665432110 0000011222333455667789999999988874 677778888999
Q ss_pred HHHHHcCC--hhHHHHHHHHHHHHHHHhhcCCcccHHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 290 NIYMSLCR--FDEAIFSYQKGLTVFKATRGEDHLSVASI-FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 290 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
.++...++ +++|+..++++++. +|....+ +..+|.++...+++++|+.++++++.+.. ..
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p---------~~ 177 (334)
T d1dcea1 115 WLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------SN 177 (334)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---------CC
T ss_pred HHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC---------CC
Confidence 88887765 78999999999998 4554444 56788999999999999999999987743 34
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
..++.++|.++...|++++|...+++++.+.+.. ......+...+..+++...+.+++.. .
T Consensus 178 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~a~~~~~~~l~~--------~ 238 (334)
T d1dcea1 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWLLG--------R 238 (334)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------HHHHHHHHHHCSSCSHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHHh--------C
Confidence 6789999999999999999999998888887654 13344566778888999999988863 2
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
+.....+..+|.++...|++.+|+..+.+++.. +|....++..+|.++...|++++|+.+|++++++
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l----- 305 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV----- 305 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH-----
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----
Confidence 222345667888899999999999999999987 8999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhchH
Q 007930 527 GTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
+|.....+..|+..+.-...+
T Consensus 306 ---dP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 306 ---DPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp ---CGGGHHHHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHhHhhHH
Confidence 999999999998888754433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.5e-17 Score=148.23 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 281 (584)
.|...|.+|...++|++|++.|.+++++..... +....+.++..+|.+|..+|++++|++.+++++.+....+.....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 444557889999999999999999999998876 456778899999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 282 AAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 282 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
..++..+|.++.. .|++++|+.+|++++++..... +.+....++.++|.++..+|++++|+..|++++...... .
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~--~ 192 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--R 192 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--T
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc--h
Confidence 9999999999865 6999999999999999887653 345567889999999999999999999999999887553 2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAVV 436 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~ 436 (584)
.........+...+.++...|++..|...+++++++.+....... ...+..+..++.. .+.+++|+..|+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre--~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 334455667788999999999999999999999888766533221 2344455555544 3457888887765443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=5.6e-19 Score=161.68 Aligned_cols=274 Identities=10% Similarity=-0.046 Sum_probs=219.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH----------HhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 166 DTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI----------QAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
......+..++|+..+++++.. +|+...+|...+.++. ..|++++|+.+++++++..|+..
T Consensus 37 ~~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~- 107 (334)
T d1dcea1 37 QKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY- 107 (334)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-
T ss_pred HHHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH-
Confidence 3334444568999999999998 7877777766665544 34558899999999998765543
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 236 SASLEEAADRRLMALVYEAKAD--YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
.++..+|.++...++ +++|+..+.+++.. +.......+...|.++...+++++|+..+++++..
T Consensus 108 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-- 173 (334)
T d1dcea1 108 -------GTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (334)
T ss_dssp -------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred -------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--
Confidence 447888888877764 89999999999886 33334444567889999999999999999999887
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 314 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
+|....++..+|.++...|++++|+..+.+++.+... . ......+...+..+++...+.++
T Consensus 174 ------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~----~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---------E----LELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---------H----HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---------H----HHHHHHHHHhcchhHHHHHHHHH
Confidence 7889999999999999999999999988888887532 1 22334456678888899999998
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 007930 394 MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELF 473 (584)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (584)
+...+..... +..++.++...|++.+|+..+.+++. ..+....++..+|.++...|++++|+.+|
T Consensus 235 l~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 235 LLGRAEPLFR-------CELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp HHSCCCCSSS-------CCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred HHhCcchhhH-------HHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8776554332 23567888889999999999999887 46677899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 007930 474 EEARGVLEQECGSCHLDTLGVYSNLAATYDA 504 (584)
Q Consensus 474 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 504 (584)
++++++ +|.....|..|+..+..
T Consensus 300 ~~ai~l--------dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 300 STLKAV--------DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHH--------CGGGHHHHHHHHHHHHH
T ss_pred HHHHHH--------CcccHHHHHHHHHHHhH
Confidence 999999 89988999999887764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=3e-18 Score=150.84 Aligned_cols=226 Identities=11% Similarity=0.001 Sum_probs=162.6
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
.+.+.++..+++.+.. ....++..+.+++.+|.+|...|++++|+..|++++++ +|..+.++.++|.++.
T Consensus 13 ~~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~ 82 (259)
T d1xnfa_ 13 LQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLT 82 (259)
T ss_dssp HHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHH
Confidence 3455566666554321 11235567889999999999999999999999999998 7888999999999999
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
.+|++++|+..|++++++.+. ...++.++|.++..+|++++|+..++++++..+.. ......++
T Consensus 83 ~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~ 146 (259)
T d1xnfa_ 83 QAGNFDAAYEAFDSVLELDPT---------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------PFRSLWLY 146 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHhh---------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-------HHHHHHHH
Confidence 999999999999999998533 35689999999999999999999999999886543 23344566
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
..+...+..+.+......... . ....+........++. ....+.++.+...+...... .+....++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 212 (259)
T d1xnfa_ 147 LAEQKLDEKQAKEVLKQHFEK----S-DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETN 212 (259)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH----S-CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHhhc----c-chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHH
Confidence 666666665554444333222 1 1122211111111111 11223455555555555555 56667889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+|.+|...|++++|+.+|++++..
T Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 213 FYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=8.2e-18 Score=148.02 Aligned_cols=229 Identities=14% Similarity=0.046 Sum_probs=160.5
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
++.+.|+..+++++... ...+.....+++.+|.+|...|++++|+..|++++.+ +|..+.++..+|.
T Consensus 13 ~~~e~al~~~~e~l~~~-----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~ 79 (259)
T d1xnfa_ 13 LQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGI 79 (259)
T ss_dssp HHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhch
Confidence 44566666666655321 1122223467999999999999999999999999999 7888999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
++...|++++|+..|++++++.|... .++..+|.++...|++++|+..+++++.. .|........+
T Consensus 80 ~~~~~g~~~~A~~~~~~al~~~p~~~--------~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~ 145 (259)
T d1xnfa_ 80 YLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWL 145 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhh--------hhHHHHHHHHHHHhhHHHHHHHHHHHHhh------ccccHHHHHHH
Confidence 99999999999999999999876543 45999999999999999999999999875 33334445566
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
+..+...+....+.......... ....+........++. ....+.++.+...+....... +....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (259)
T d1xnfa_ 146 YLAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLA---------EHLSE 210 (259)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHH---------HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhcc-----chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcC---------cccHH
Confidence 66666666554444433332221 1111211111111111 112233444554444444443 45577
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
++..+|.++...|++++|+.+|++++...|.
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999976554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.2e-16 Score=147.05 Aligned_cols=232 Identities=13% Similarity=0.057 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc
Q 007930 260 SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339 (584)
Q Consensus 260 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 339 (584)
+|+++|++|+.+ .++.+.++.++|.++..+|++.+| |++++.. +|..+..+...+.+. ...
T Consensus 4 eA~q~~~qA~~l------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~~~ 64 (497)
T d1ya0a1 4 QSAQYLRQAEVL------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--NHA 64 (497)
T ss_dssp HHHHHHHHHHHH------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--HHH
T ss_pred HHHHHHHHHHHc------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--HHH
Confidence 688999999886 566677778899999999998876 7888776 555555543333222 223
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
|..+++.+++..+.... ..... .....++.+....+.|+.|+..+.+++.+.+.. ...+.++|.++.
T Consensus 65 y~~~ie~~r~~~k~~~~----~~~~~--~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~-------~~~~~~lg~~~~ 131 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRAN----PNRSE--VQANLSLFLEAASGFYTQLLQELCTVFNVDLPC-------RVKSSQLGIISN 131 (497)
T ss_dssp THHHHHHHHHHHSCSSC----TTTTH--HHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHhcccccC----ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh-------HHHHHHhHHHHH
Confidence 55666666665543211 11111 112224455555666666666666665554333 556678999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|++++|...+++++... ...++.++|.++...|++++|+.+|++|+++ .|+...++++||
T Consensus 132 ~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg 193 (497)
T d1ya0a1 132 KQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA 193 (497)
T ss_dssp -----------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHH
Confidence 9999999999999988752 2467888999999999999999999999999 899999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
.++...|++.+|+.+|.+++.+ .|....++.+|+.++....+
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987 66777888888888776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.3e-15 Score=144.23 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 007930 176 RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK 255 (584)
Q Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~ 255 (584)
+|+++|++|+.+ .|+.+.++.++|.++...|++++| |++++...++... .+...+.++ .
T Consensus 4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~--------~~~~e~~Lw--~ 62 (497)
T d1ya0a1 4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYAL--------DKKVEQDLW--N 62 (497)
T ss_dssp HHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHH--------HHTHHHHHH--H
T ss_pred HHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHH--------HHhHHHHHH--H
Confidence 789999999999 688889999999999999999876 7888877654321 121111111 2
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENE-VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
..|..+++.+++... ....+. .......++.+....+.|+.|+..+.+++.+ .+.....+.++|.++
T Consensus 63 ~~y~~~ie~~r~~~k----~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~ 130 (497)
T d1ya0a1 63 HAFKNQITTLQGQAK----NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIIS 130 (497)
T ss_dssp HHTHHHHHHHHHHHS----CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHHHhcc----cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHH
Confidence 224455555554332 111111 1111222445555566666776666666655 577788899999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
...|++++|...+.+++... ...++.++|.++...|++++|+.+|++|+.+.|+. +..++++
T Consensus 131 ~~~~~~~~A~~~~~~al~~~-----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-------~~~~~~L 192 (497)
T d1ya0a1 131 NKQTHTSAIVKPQSSSCSYI-----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------GQPYNQL 192 (497)
T ss_dssp ------------CCHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------SHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------hHHHHHH
Confidence 99999999999999998764 23688899999999999999999999999998877 5788999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
|.++...|++.+|+.+|.+++.. .+....++.+|+.++....+..++... ....+.....
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 252 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVKT------------KWGVSDFIKA 252 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCCS------------SCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhcc------------ccccchHHHH
Confidence 99999999999999999999974 333567889998887654322111000 0011122233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
...+..++......+......++.+..+...+.
T Consensus 253 f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 285 (497)
T d1ya0a1 253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF 285 (497)
T ss_dssp HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 444444555666666666666666665555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-13 Score=109.28 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC-------chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS-------AFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
+..+...|..++..|++++|+..|++++........... .....++.++|.+|..+|++++|+.++++++.+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~- 91 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 91 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence 456678899999999999999999999998654433222 123456788999999999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
+|....+++.+|.+|..+|++++|+..|++++++ +|++..+...++.+....++..+.....++.
T Consensus 92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~ 156 (170)
T d1p5qa1 92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 156 (170)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 8889999999999998888887765444555
Q ss_pred HHh
Q 007930 561 LLD 563 (584)
Q Consensus 561 ~~~ 563 (584)
+++
T Consensus 157 ~f~ 159 (170)
T d1p5qa1 157 MFE 159 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-13 Score=103.24 Aligned_cols=110 Identities=21% Similarity=0.121 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+...|..++..|++++|+.+|++++.. .|....++..+|.++..+|++++|+..+.+++++ +|.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~ 69 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD 69 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence 457899999999999999999999985 4455789999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
...+++++|.++..+|++++|+..|++++++ +|++..++..++.+.
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999998 788888888887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.2e-13 Score=113.19 Aligned_cols=139 Identities=14% Similarity=0.050 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.+++.|..+...|++++|++.|.++. + + .+.+++++|.++..+|++++|+..|++|+++ +|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~-------~---~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ-------D---P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-------S---C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC-------C---C-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence 34467999999999999999887531 1 1 2468999999999999999999999999999 89
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-------HhC-CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREE-------KLG-TANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
..+.++.++|.++..+|++++|+..|++++...+. ..+ .......++++++|.++..+|++++|. ..++.+
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~-~~l~~A 146 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLALA 146 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence 99999999999999999999999999999975321 011 112234688999999999999999999 888888
Q ss_pred Hhhhhhh
Q 007930 562 LDSNAYR 568 (584)
Q Consensus 562 ~~~~~~~ 568 (584)
+...++.
T Consensus 147 ~~~~~~~ 153 (192)
T d1hh8a_ 147 TSMKSEP 153 (192)
T ss_dssp HTTCCSG
T ss_pred HhcCCCc
Confidence 8665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.1e-13 Score=106.22 Aligned_cols=123 Identities=20% Similarity=0.110 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+...|..++..|+|++|+.+|++++++ .|....++.++|.++...|++++|+..|++++++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------- 73 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 73 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence 344557899999999999999999999996 3456789999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--hchHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE--TGRARNRK 554 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~ 554 (584)
+|....++..+|.++..+|++++|+..+++++.+ +|.+..++..++.+... .+.+++|.
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~ 134 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI 134 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 78888888777776543 34455555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-13 Score=112.91 Aligned_cols=135 Identities=17% Similarity=0.151 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
.+.+.|..+...|++++|++.|.++. . . .+.+++++|.+|..+|++++|+..|++++++.+..
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~--------~-~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----- 69 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ--------D-P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----- 69 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------S-C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC--------C-C---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-----
Confidence 34567999999999999999987531 1 1 24678999999999999999999999999997766
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc--------CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS--------GESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
+.++.++|.++..+|++++|+..|++++...+.. +.........+++++|.++...|++++|++.+++++
T Consensus 70 --~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 70 --AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7889999999999999999999999999753321 111223346788999999999999999999999999
Q ss_pred HH
Q 007930 478 GV 479 (584)
Q Consensus 478 ~~ 479 (584)
.+
T Consensus 148 ~~ 149 (192)
T d1hh8a_ 148 SM 149 (192)
T ss_dssp TT
T ss_pred hc
Confidence 87
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.50 E-value=9.2e-13 Score=105.52 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-------SAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
+..+...|..++..|+|.+|+..|.+++.......... ......++.++|.+|..+|++++|+.++++++.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l- 93 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence 45566789999999999999999999998765432211 1224567888999999999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
+|....+++.+|.++..+|++++|+..|++++.+ +|++..+...++.+....+...+...+.+..
T Consensus 94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~ 158 (168)
T d1kt1a1 94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN 158 (168)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 8999999999999998888887765566655
Q ss_pred HHhh
Q 007930 561 LLDS 564 (584)
Q Consensus 561 ~~~~ 564 (584)
+.+.
T Consensus 159 ~f~~ 162 (168)
T d1kt1a1 159 MFKK 162 (168)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.4e-13 Score=99.81 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
-+...|..++..|++++|+..|.++++. +|....++.++|.+|..+|++++|+..+++++.+ +|
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p 68 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP 68 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence 3567899999999999999999999999 8999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.+..+++++|.++..+|++++|+ ..++.++..+|+...
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~A~-~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 69 DWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANNPQ 106 (117)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTCHH
T ss_pred chhhHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHH
Confidence 99999999999999999999999 999999988887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=7.5e-13 Score=103.99 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc--------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA--------FFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+..+...|..++..|+|.+|+..|++++.++......... ....++.++|.+|..+|++++|+.++++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 3445678999999999999999999999876544332221 12357789999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
+|....+++.+|.++..+|++++|+..|++++++ +|++..+...+..+..++++.
T Consensus 97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHH
T ss_pred --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 899999998888887766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.5e-12 Score=102.14 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+..+...|..++..|++++|+.+|++++++.+.. ..++.++|.++...|++++|+..|++++++
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------- 73 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 73 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh-------hhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence 35667788999999999999999999999997766 788999999999999999999999999996
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEY 517 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 517 (584)
.+....++..+|.++..+|++++|+..+++++.+ .|....++..++.+... .+.+++|+.....
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 139 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 3445688999999999999999999999999999 77777888887776543 3345555544333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.43 E-value=1.4e-12 Score=96.13 Aligned_cols=94 Identities=21% Similarity=0.115 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
..+.+|.++...|++++|+..|++++.. +|+...++..+|.++...|++++|+.+|++++++ +|
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p 81 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 81 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence 4567899999999999999999999999 8899999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+...++..+|.+|..+|++++|. ..++..|
T Consensus 82 ~~~~a~~~la~~y~~~g~~~~A~-~~l~~~l 111 (112)
T d1hxia_ 82 KDIAVHAALAVSHTNEHNANAAL-ASLRAWL 111 (112)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ccccchHHHHHHHHHCCCHHHHH-HHHHHHh
Confidence 99999999999999999999999 7776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.43 E-value=2.3e-12 Score=103.46 Aligned_cols=128 Identities=11% Similarity=0.134 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--------CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGE--------SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
+...|..+...|++.+|+..|++++........ ...+....++.++|.++..+|++++|+..+.+++++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--- 106 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--- 106 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence 346788999999999999999999986543210 112446678899999999999999999999999998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|..+.+++.+|.+|..+|++++|+..|++++++ +|++..+...++.+........++.
T Consensus 107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 8888899999999988877776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.42 E-value=5.7e-12 Score=99.45 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=106.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC----cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC--C
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED----HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP--A 360 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~ 360 (584)
..|..++..|+|++|+..|++++++........ .+..+.++.++|.+|..+|++++|+..+++++.+.++... .
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 347788899999999999999999876643211 2235678999999999999999999999999998765321 2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV 421 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (584)
...+....+++++|.+|..+|++++|+..|++++++.++..+...........++..+..+
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l 154 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL 154 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence 2345567789999999999999999999999999999998776665555555555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1e-11 Score=99.39 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc--------cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS--------TIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
.+..+...|..++..|++++|+..|++++.+.+...+... ....++.++|.+|.++|++++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 4567778999999999999999999999999876644322 23456788999999999999999999999996
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
.|....+++.+|.++..+|++++|+..|++++++ +|+...+...++.+....+...+..
T Consensus 92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999 8888889999999887776655443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.41 E-value=6.4e-12 Score=99.14 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=107.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKS----AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC- 487 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~- 487 (584)
..|..++..|+|++|+..|++++++.+..++... ...+.++.++|.+|..+|++++|+..+++++.+..+.....
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 4488889999999999999999999887654322 23467899999999999999999999999999987764432
Q ss_pred --CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 488 --HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 488 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
.+....+++++|.+|..+|++++|+..|++++++..+..+. .+........++..+.++|
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~lg 155 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQLG 155 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHcC
Confidence 23445678999999999999999999999999998776653 4555566666666655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=4.7e-13 Score=111.83 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+...|..++..|+|++|+..|++++.+ .|..+.++.++|.+|...|++++|+.+|++++++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 345668899999999999999999999996 3445789999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+|....++.++|.+|..+|++++|+..|++++++...
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 8999999999999999999999999999999998544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.1e-12 Score=109.44 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+..+...|..++..|+|++|+.+|++++++ +|..+.++.++|.+|...|++++|+.+|++++++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 456778999999999999999999999999 8999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|+...++.++|.+|..+|++++|. ..++.++...|+.
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~-~~~~~al~l~p~~ 105 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKEQ 105 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCccc
Confidence 8999999999999999999999999 8999988777653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8.2e-12 Score=94.51 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
.+..+|..++..|+|++|+.+|++++++ +|....++.++|.+|...|++++|+..+++++++.+.... ...
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~ 76 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYR 76 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH-HHH
Confidence 3678999999999999999999999999 7888899999999999999999999999999999998775 345
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
..+.++..+|.++...+++++|+.+|.+++.
T Consensus 77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6678899999999999999999999998865
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.3e-12 Score=94.87 Aligned_cols=114 Identities=16% Similarity=0.065 Sum_probs=95.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---YRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
+++..+...+++++|++.|++++.+ .|....+++++|.++... +++++|+..|++++.. ...+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~ 69 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence 5777888999999999999999996 445678999999999864 4566799999888875 1123
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
....++++||.+|..+|++++|+.+|++++++ +|++..+...++.+..+.+
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHc
Confidence 34568999999999999999999999999999 8999999988888776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.2e-11 Score=93.59 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
+..+..+|..++..|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++.+.. ..
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~--~~ 73 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--RE 73 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc--HH
Confidence 345578999999999999999999999998 68889999999999999999999999999999998774 45
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
.....+.++..+|.++...+++++|+.+|++++..
T Consensus 74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56777889999999999999999999999999875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.35 E-value=5.3e-12 Score=92.88 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
.+.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++++ +|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence 357899999999999999999999986 3445789999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
...++..+|.+|...|++++|++.+++.+
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.35 E-value=1.3e-11 Score=96.72 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc---------cHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS---------TIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
.+..+...|..++..|+|.+|+..|++++.+.+....... ....++.++|.+|..+|++++|+.++++++.
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 3556777899999999999999999999998766543222 1235778999999999999999999999998
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+ .|....+++.+|.++..+|++++|+..|++++++ +|+...+...++.+..++
T Consensus 96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHH
T ss_pred c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 6 3445789999999999999999999999999999 888888888888776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.34 E-value=3.5e-11 Score=96.11 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc--------ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH--------STIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
.+..+...|..++..|++.+|+..|.+++...+...... .....++.++|.+|..+|++++|+.++++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 356778899999999999999999999999887664432 224567788999999999999999999999986
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
.|....+++.+|.++..+|++++|+..|++++.+ +|+...+...++.+....+.+.+
T Consensus 94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHH
Confidence 3445789999999999999999999999999998 88888899999988877765543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.33 E-value=6e-10 Score=97.04 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 357 (584)
+..++.+|..+...+++.+|+.+|+++.+. ....+...||.+|.. ..++..|..+++.+....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence 356788999999999999999999998654 345678899999987 668899999998877642
Q ss_pred CCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARS 429 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 429 (584)
...+...+|.++.. ..+.+.|...++++... +. ......++..+.. ......|..
T Consensus 69 --------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-----g~----~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 69 --------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KY----AEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp --------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred --------ccchhhccccccccccccchhhHHHHHHHhhhhhh-----hh----hhHHHhhcccccCCCcccchhHHHHH
Confidence 23556677777765 35788899888887653 11 2334456666664 345667777
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA- 504 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~- 504 (584)
.+.+.... .....+..+|.++.. ..+...+..+++.+.+. ....+++.||.+|..
T Consensus 132 ~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g 191 (265)
T d1ouva_ 132 YFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHG 191 (265)
T ss_dssp HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHT
T ss_pred Hhhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccC
Confidence 77666552 124677889988886 35677777887777654 345789999999987
Q ss_pred ---cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhhhH
Q 007930 505 ---LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 505 ---~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
..++++|+.+|+++.+. ..+.++++||.+|.. ..++++|. .+++.+.+...+...
T Consensus 192 ~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~LG~~y~~G~g~~~n~~~A~-~~~~kAa~~g~~~A~ 253 (265)
T d1ouva_ 192 EGATKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAKGAC 253 (265)
T ss_dssp CSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCHHHH
T ss_pred cccccchhhhhhhHhhhhcc----------cCHHHHHHHHHHHHcCCCCccCHHHHH-HHHHHHHHCcCHHHH
Confidence 67899999999999874 235788999999986 34788899 999998887766554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.33 E-value=6.5e-10 Score=96.80 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhhcC
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS----LCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
..++.+|..+...+++++|+++|+++.+. ....++..+|.+|.. ..++..|..+++.+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~------- 67 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------- 67 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------
Confidence 46889999999999999999999998642 235678899999987 66889999998887654
Q ss_pred CcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA----LNEHEEALKLL 390 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 390 (584)
....+...+|.++.. ..+.+.|...++.+.... ...+...++..+.. ......+...+
T Consensus 68 ---~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-----------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~ 133 (265)
T d1ouva_ 68 ---NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEYF 133 (265)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred ---cccchhhccccccccccccchhhHHHHHHHhhhhhhh-----------hhhHHHhhcccccCCCcccchhHHHHHHh
Confidence 334556677777765 467889999999887642 13455666666664 34566666666
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----
Q 007930 391 QKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ---- 462 (584)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 462 (584)
.+..... . ...+..+|.++.. ..+...+..+++.+.+. ....+++++|.++..
T Consensus 134 ~~~~~~~--~-------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 134 TKACDLN--D-------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGEGA 194 (265)
T ss_dssp HHHHHTT--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTCSS
T ss_pred hhhhccc--c-------cchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCccc
Confidence 6544321 1 3456788988886 34666777777777652 125788999999987
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
..++++|+.+|+++.+. ..+.++++||.+|.. ..++++|.++|++|...
T Consensus 195 ~~d~~~A~~~~~~aa~~----------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 195 TKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp CCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ccchhhhhhhHhhhhcc----------cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 67899999999999875 335789999999986 44899999999999986
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=6.9e-10 Score=98.83 Aligned_cols=234 Identities=10% Similarity=0.072 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHH-------HHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 132 EEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGD-------TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 132 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
+.+...|++|+...+ .++.. |...+. .....|....+...++++..+..+......|.....+.
T Consensus 33 ~Rv~~vyerAl~~~~-----~~~~l----W~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~ 103 (308)
T d2onda1 33 KRVMFAYEQCLLVLG-----HHPDI----WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHH----HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHCC-----CCHHH----HHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHH
Confidence 456667888888763 23322 333332 23333333333333344433333332222455667888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI 284 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 284 (584)
..+......|++++|...|++++...+.. ...++...+......|+++.|.+.|.+++.. .+.....
T Consensus 104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-------~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~------~~~~~~~ 170 (308)
T d2onda1 104 AYADYEESRMKYEKVHSIYNRLLAIEDID-------PTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHV 170 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSC-------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------TTCCTHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHH
Confidence 89999999999999999999998753322 1234778888999999999999999998753 3444456
Q ss_pred HHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 285 DVSIGNIYM-SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 285 ~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
+...+.... ..|+.+.|..+|++++.. .|.....+...+......|+++.|..+|++++..... ++
T Consensus 171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~-----~~ 237 (308)
T d2onda1 171 YVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-----PP 237 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS-----CG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----Ch
Confidence 666776644 468999999999999987 5777888999999999999999999999999987522 22
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
......|..........|+.+.+..+++++.+.++..
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 3345567777777788899999999999999988765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.29 E-value=3.3e-11 Score=96.57 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC---------CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG---------YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+..+...|..+...|++++|+..|.+++...+.... ..+....++.++|.++.++|++++|+..+++++++
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 344567788999999999999999999987653311 12345677889999999999999999999999985
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA 511 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 511 (584)
.|..+.+++.+|.++..+|++++|+..|++++++ .|+...+...++.+........++
T Consensus 107 --------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 107 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999 788888888888888766555444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.9e-11 Score=89.64 Aligned_cols=114 Identities=7% Similarity=-0.086 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV---VGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
.+++..+...+++++|.+.|++++.+.+.. ..+++++|.++.. .+++++|+..|++++.. ...+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~ 69 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence 356778889999999999999999997776 7788999999986 45666799999888763 0123
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
....+++++|.+|...|++++|+.+|++++++ .|+...+...++.+..+.
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHH
Confidence 33568999999999999999999999999999 888888888887776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.4e-09 Score=96.74 Aligned_cols=231 Identities=11% Similarity=0.029 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-------HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 007930 258 YESALEHLVLASMVMIANGQENEVAAIDVSIGNI-------YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330 (584)
Q Consensus 258 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 330 (584)
.+.+...|++|+... +....++...+.. ....|....+...++++..++++......|.....+...
T Consensus 32 ~~Rv~~vyerAl~~~------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~y 105 (308)
T d2onda1 32 TKRVMFAYEQCLLVL------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345566677776642 2222334333332 333344433444444444443332221246667788899
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
+.++...|+++.|...|++++..... ....++...+......|+++.|...|++++...+.. ...
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~~--------~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~-------~~~ 170 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIEDI--------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-------HHV 170 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSS--------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-------THH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHH
Confidence 99999999999999999999876422 123567888899999999999999999998765543 344
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 411 EAQMGVMLY-VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 411 ~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
+...+.... ..|+.+.|..+|++++... +.....+...+..+...|+++.|..+|++++.. .+.+|
T Consensus 171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~-----~~~~~ 237 (308)
T d2onda1 171 YVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPP 237 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-----SSSCG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh
Confidence 555666543 4689999999999999853 233578888999999999999999999999986 12233
Q ss_pred c-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 490 D-TLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 490 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
. ...++..........|+.+.+...++++.+++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 34567777777788899999999999998884
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.23 E-value=4e-11 Score=92.63 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=97.1
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHHHhCC
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----------YRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+.+.+.|++|+..|++++++ .|..+.++.++|.++... +.+++|+..|++++++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence 456788899999999999996 455678999999999854 5568899999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGR-----------VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|+...+++++|.+|..+|+ +++|.++|++++++ +|++...+..|+.+....+.+.++.
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988764 68888888888888 8999999999998887777776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.5e-10 Score=81.77 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+.-++.+|.++...|+|++|+.+|++|+++..... ...+..+.++.+||.++.+.|++++|+.+|++++++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 35577999999999999999999999999865432 234567899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhc
Q 007930 530 NPDIDDEKERLAELLKETG 548 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g 548 (584)
+|+...++.+++.+...++
T Consensus 76 ~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhC
Confidence 8999999999988766553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.9e-10 Score=79.01 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+.-++.+|.++...|+|.+|+.+|++|+++....... ....+.++.++|.++...|++++|+.+|++++++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 3445789999999999999999999999987765433 3456889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHc
Q 007930 488 HLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~ 505 (584)
+|+...++.+++.+...+
T Consensus 76 ~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 899999999998766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=3.8e-10 Score=86.98 Aligned_cols=107 Identities=19% Similarity=0.106 Sum_probs=87.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 376 IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV----------GRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 376 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+.+.+.+++|+..|++++++.|.. +.++.++|.++... +.+++|+..|++++++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~-------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcc-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------
Confidence 3567788999999999999998887 78888999998855 4557899999999886
Q ss_pred CchHHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 446 SAFFGIVLNQMGLACLQLYR-----------INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
.|....+++++|.+|..+|+ +++|+++|++++++ +|+....+..|+.+....
T Consensus 71 ~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 71 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHH
T ss_pred cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHH
Confidence 34457899999999987764 68899999999998 888888888888775433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=6.7e-08 Score=76.84 Aligned_cols=130 Identities=13% Similarity=0.000 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
.....+...|......|++++|...|.+++.+.+...-... ..+.+ +. .....+
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------------~~~~w--~~---~~r~~l------- 62 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------------RDFQF--VE---PFATAL------- 62 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------------TTSTT--HH---HHHHHH-------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------------cchHH--HH---HHHHHH-------
Confidence 45677888999999999999999999999988654321100 00000 00 111111
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.+....++..++.++...|++++|+.++++++.+ +|....++..++.++...|++.+|+..|+++.....+
T Consensus 63 -~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~ 133 (179)
T d2ff4a2 63 -VEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 133 (179)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 1123567889999999999999999999999999 9999999999999999999999999999999999988
Q ss_pred HhCCC
Q 007930 525 KLGTA 529 (584)
Q Consensus 525 ~~~~~ 529 (584)
.+|.+
T Consensus 134 eLG~~ 138 (179)
T d2ff4a2 134 DLGID 138 (179)
T ss_dssp HHSCC
T ss_pred HhCCC
Confidence 88853
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.69 E-value=1.7e-07 Score=74.41 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=97.4
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh-------------hhHHHHHHHHHHHHHhcCChHH
Q 007930 110 QELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-------------LAKFSGYMQLGDTCSSMGLLDR 176 (584)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~ 176 (584)
-+......+...|......|++++|+..|.+|+.+.+.....+.. ...+.++..++.++...|++++
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 355678888899999999999999999999999886432111110 1123568899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
|+..+++++.+ +|....++..++.++...|++.+|+..|+++.......
T Consensus 86 Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e 134 (179)
T d2ff4a2 86 VIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 134 (179)
T ss_dssp HHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999998887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.68 E-value=9e-09 Score=87.64 Aligned_cols=130 Identities=9% Similarity=-0.126 Sum_probs=105.6
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
.-.+..|++++|+..++++++ ..|.....+..+|.++...|++++|+..|++++++ +|+...++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~ 67 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA 67 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 345678999999999999999 45667899999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
..++.++...+..+++...+.+... ..+|.....+...+.++...|++++|. ..++.+.+..|...
T Consensus 68 ~~l~~ll~a~~~~~~a~~~~~~~~~-------~~~p~~~~~~l~~a~~~~~~gd~~~A~-~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 68 SQLRHLVKAAQARKDFAQGAATAKV-------LGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQEKG 133 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEC-------CCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCCCC
T ss_pred HHHHHHHHhccccHHHHHHhhhhhc-------ccCchHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCCCCC
Confidence 9999888766665554433222211 235777788888999999999999999 78888887776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.47 E-value=8.9e-08 Score=81.39 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=99.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 007930 166 DTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADR 245 (584)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 245 (584)
.-....|++++|+..++++++. +|....++..++.++...|++++|+..+++++++.|... ..+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--------~~~ 67 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--------PGA 67 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--------HHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--------HHH
Confidence 3456789999999999999999 899999999999999999999999999999999876543 346
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
..++.++...+..+++...+.+.. ....+.....+...+..+...|++++|...+.++.+.
T Consensus 68 ~~l~~ll~a~~~~~~a~~~~~~~~-----~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 68 SQLRHLVKAAQARKDFAQGAATAK-----VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEE-----CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHhhhhh-----cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 667777766666655543322110 1124556667778899999999999999999999887
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=2.5e-05 Score=58.34 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=85.0
Q ss_pred cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH
Q 007930 381 NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLAC 460 (584)
Q Consensus 381 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (584)
.|+++|+.+|+++.+. ++. .....++. ....+.++|+.+++++.+. . ...+.+.+|.+|
T Consensus 7 kd~~~A~~~~~kaa~~-----g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g---~~~a~~~Lg~~y 65 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-----NEM----FGCLSLVS--NSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDFY 65 (133)
T ss_dssp HHHHHHHHHHHHHHHT-----TCT----THHHHHHT--CTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-----CCh----hhhhhhcc--ccccCHHHHHHHHhhhhcc-------c---chhhhhhHHHhh
Confidence 4788999999998754 222 12334443 3457899999999998863 1 257788999998
Q ss_pred Hh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 461 LQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 461 ~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
.. ..++++|+.+|+++.+. ..+.+.+.||.+|.. ..+.++|..+|+++.+.
T Consensus 66 ~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 66 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 86 46789999999999875 345789999999987 56899999999999885
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.06 E-value=2.4e-05 Score=55.59 Aligned_cols=80 Identities=5% Similarity=-0.078 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQL---YRINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 450 ~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
..+.++.|.++... .+.++|+.++++++.. +|. ..+.++.||..|.++|++++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---- 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---- 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence 56788888888865 4567888888888775 554 4589999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHH
Q 007930 526 LGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~ 545 (584)
.|++..+....-.+..
T Consensus 103 ----eP~n~qA~~L~~~Ie~ 118 (124)
T d2pqrb1 103 ----ERNNKQVGALKSMVED 118 (124)
T ss_dssp ----CTTCHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHH
Confidence 8888877665554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.98 E-value=6.7e-05 Score=55.93 Aligned_cols=114 Identities=9% Similarity=-0.044 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
.|+++|+.+|+++.+. .. ..+...++. ....++++|+.+++++.+. ....+.+.||.+
T Consensus 7 kd~~~A~~~~~kaa~~-------g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~ 64 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-------NE---MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHHT-------TC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-------CC---hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence 4788999999999763 11 234455553 3457899999999998775 345789999999
Q ss_pred HHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhh
Q 007930 502 YDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 502 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
|.. ..++++|..+|+++.+. ..+.+.++||.+|.. ..+.++|. ..++.+.+.....
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~-~~~~~Aa~~G~~~ 128 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLGSED 128 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTTCHH
T ss_pred hhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHH-HHHHHHHHCCCHH
Confidence 986 56789999999999874 235778999999987 45788898 8888877665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=0.00033 Score=49.61 Aligned_cols=79 Identities=8% Similarity=-0.085 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
..+.++.|+++.+.. +..+++.++++++.. .+.....+++.+|..|...|+|++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----- 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence 567788899888664 567888888887763 33345689999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~ 501 (584)
.|+...+....-.+
T Consensus 103 ---eP~n~qA~~L~~~I 116 (124)
T d2pqrb1 103 ---ERNNKQVGALKSMV 116 (124)
T ss_dssp ---CTTCHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHH
Confidence 78776665544433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.5 Score=42.69 Aligned_cols=200 Identities=9% Similarity=-0.077 Sum_probs=118.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
.+..-....+.+.|...+....... .............++......+..+.+...+....... .+ ....
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~ 288 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS------QS-TSLI 288 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC------CC-HHHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcc----cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc------cc-hHHH
Confidence 3444444567777777666544321 11112223333334444445566777777776654432 11 2222
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------HHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV--------KLR 439 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~~ 439 (584)
. .++......+++..+...+... ...........+.+|..+...|+.++|..+|..+.. ...
T Consensus 289 ~---w~~~~al~~~~~~~~~~~~~~l-------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~ 358 (450)
T d1qsaa1 289 E---RRVRMALGTGDRRGLNTWLARL-------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (450)
T ss_dssp H---HHHHHHHHHTCHHHHHHHHHHS-------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred H---HHHHHHHHcCChHHHHHHHHhc-------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHH
Confidence 2 2222345668888877766542 222333356778999999999999999999998754 122
Q ss_pred HcCCCCC------------chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 440 ASGESKS------------AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 440 ~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
.+|.+.. ......-...+..+...|+...|...+..++.. . ...-...++.+..+.|.
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--------~--~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--------K--SKTEQAQLARYAFNNQW 428 (450)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--CHHHHHHHHHHHHHTTC
T ss_pred HcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--------C--CHHHHHHHHHHHHHCCC
Confidence 2322100 011122335577788899999999988766542 1 23456788999999999
Q ss_pred hHHHHHHHHHH
Q 007930 508 VEDAIEILEYI 518 (584)
Q Consensus 508 ~~~A~~~~~~a 518 (584)
++.|+....++
T Consensus 429 ~~~aI~a~~~~ 439 (450)
T d1qsaa1 429 WDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 99999776665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.17 E-value=1.4 Score=37.39 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=19.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 247 LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
.+|..+...|.|+.|..+|... .+ +..+..++...+++..|.+.+.+
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~----------~d----~~rl~~~~v~l~~~~~avd~~~k 65 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV----------SN----FGRLASTLVHLGEYQAAVDGARK 65 (336)
T ss_dssp ----------CTTTHHHHHHHT----------TC----HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC----------CC----HHHHHHHHHhhccHHHHHHHHHH
Confidence 4555566666666666666531 11 12233455566666666665543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=2.5 Score=37.89 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
..+.......+.+.|...+........ ............++..+...+..+.+...+...... ......
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~ 287 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQ---LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTSL 287 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhccc---ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--------ccchHH
Confidence 344444455678888887766543221 122222333334444445556667777766655431 111222
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------HHH
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV-------REE 524 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~ 524 (584)
....++ .....+++..+...+...- ..........+.+|..+...|+.++|..+|..+..- ...
T Consensus 288 ~~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~ 358 (450)
T d1qsaa1 288 IERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (450)
T ss_dssp HHHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred HHHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHH
Confidence 222333 3455688888877765432 223445678899999999999999999999987641 112
Q ss_pred HhCCC-------------ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 525 KLGTA-------------NPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 525 ~~~~~-------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
.+|.. ...........+..+...|+..+|. ..+..++..
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~-~e~~~l~~~ 410 (450)
T d1qsaa1 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTAR-SEWANLVKS 410 (450)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred HcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHH-HHHHHHHhC
Confidence 22310 0011222345577888999999998 666666643
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=93.04 E-value=1.5 Score=34.18 Aligned_cols=189 Identities=9% Similarity=0.025 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
....+|.+....|+|++..++.++++.+.......-+ ..-.+.+..+|-. .|....+...+... .....+..
T Consensus 6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt----~eERnLLsvayKn~i~~~R~s~R~i~~i---e~k~~~~~ 78 (220)
T d2o8pa1 6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFD----DEERHLLTLCIKHKISDYRTMTSQVLQE---QTKQLNND 78 (220)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSCSCH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCC----HHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHhhccch
Confidence 3456789999999999999999999988531000011 1222233333321 23344444444331 12221211
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-----QLYRINEATELFEEARGV 479 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~ 479 (584)
. .. .+..-|. ..=..+-...+...+.+....-.+++......+-..|..|. ..|..++|...|++|..+
T Consensus 79 ~-~~----~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i 152 (220)
T d2o8pa1 79 E-LV----KICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL 152 (220)
T ss_dssp H-HH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred h-HH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1 11 1111111 11223344556666666665544333223333334455554 457889999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 480 LEQECGSCHLDTLGVYSNLAATY-DALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
......|.+|-......+.+..+ .-+++.++|.+..++|.+.+...+.
T Consensus 153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~ 201 (220)
T d2o8pa1 153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK 201 (220)
T ss_dssp HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 88878888888887777777655 4589999999999999776655544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.41 E-value=2.7 Score=35.54 Aligned_cols=261 Identities=12% Similarity=0.078 Sum_probs=130.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI 284 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 284 (584)
..|..+...|.|+.|..+|...-. +..+..++...++++.|.+.+.++ ....+
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~-----------~~~~~ 71 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA-----------NSTRT 71 (336)
T ss_dssp ----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH-----------TCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc-----------CCHHH
Confidence 456777788888888887763311 555667778889999998887754 12234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChH
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 364 (584)
+..+...+.......-+.- ... .....+.-...+...|...|.+++.+.+++.++.... .+
T Consensus 72 ~k~~~~~l~~~~e~~la~i-----~~~-------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~------~~- 132 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQM-----CGL-------HIVVHADELEELINYYQDRGYFEELITMLEAALGLER------AH- 132 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----TTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT------CC-
T ss_pred HHHHHHHHHhCcHHHHHHH-----HHH-------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc------cc-
Confidence 5555556665554433211 000 0112223334566777888999999999998764421 11
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHH---------HHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQK---------AMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~---------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
...+..++.+|.+.+ .++-.++++. ++..+.+. ..+..+..+|.+.|++++|+..+-.-.
T Consensus 133 --~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~i~~~ 201 (336)
T d1b89a_ 133 --MGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITMMNHP 201 (336)
T ss_dssp --HHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred --hHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHHHHcc
Confidence 335667777776543 3444444332 22222222 112345667778888887766543311
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH----------HHHHHHHHHHc
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV----------YSNLAATYDAL 505 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~la~~~~~~ 505 (584)
. + ++-....-.++.+..+.+...+...-.++. +|....- ...+.....+.
T Consensus 202 ~------~------~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--------~p~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 202 T------D------AWKEGQFKDIITKVANVELYYRAIQFYLEF--------KPLLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp T------T------TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--------CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred h------h------hhhHHHHHHHHHccCChHHHHHHHHHHHHc--------CHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 0 0 000111112233333333222222222221 2221110 12234455666
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (584)
++..-...+++.... .+.......|+.+|...++++.
T Consensus 262 ~~l~li~p~Le~v~~----------~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 262 KQLPLVKPYLRSVQN----------HNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TCTTTTHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------cChHHHHHHHHHHHhCcchhHH
Confidence 777777777766443 1223578889999999998643
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.01 E-value=0.47 Score=29.53 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
|.+.+..+...+.-+...|+|++|++++++|.........
T Consensus 4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k 43 (83)
T d2crba1 4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3345667788899999999999999999999998766655
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.19 E-value=0.96 Score=28.13 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 119 (584)
+..+-..|..+...|. |++||++.+.|...+........++....++.
T Consensus 8 AH~~~RrAer~l~~~r-ydeAIech~kA~~yl~eA~klt~s~~~l~SLq 55 (83)
T d2crba1 8 AHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQAHLSLE 55 (83)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4456778899999999 99999999999998887765555544444433
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.15 E-value=3.5 Score=32.57 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.-+..+|.+....++|++.+.+.+++++..... . ....-.+.+..+|-. .|....+...+....+..... +.
T Consensus 5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~----~--Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~-~~ 77 (236)
T d1o9da_ 5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSE----E--LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESR-GN 77 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSS----C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC----C--CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc-CC
Confidence 346678888889999999999999998763110 0 011222233333322 234444555554333222222 21
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc---CCCCCchHHHHHHHHHHHHHhh-----C-----CHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS---GESKSAFFGIVLNQMGLACLQL-----Y-----RINEAT 470 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~ 470 (584)
.... .+..-| +..=-++=..+++.++.+.... ...++......+...|..|.-. | -.+.|.
T Consensus 78 ~~~~-----~~i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~ 151 (236)
T d1o9da_ 78 EEHV-----NSIREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 151 (236)
T ss_dssp HHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence 1111 111111 1111122333445555544332 1111222233334445555422 2 246789
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVR 522 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 522 (584)
..|++|..+......+.+|-......+.+..|+. .|+.++|.+..++++.-.
T Consensus 152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a 204 (236)
T d1o9da_ 152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999888888899888888888776664 699999999888887754
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.90 E-value=0.79 Score=30.11 Aligned_cols=55 Identities=16% Similarity=-0.009 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIY 125 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (584)
.+-.++..|..+-..|+ |++|+.+|.+|++.+.......+++.....+.....-|
T Consensus 14 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eY 68 (93)
T d1wfda_ 14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY 68 (93)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 35567889999999999 99999999999999887765555555555444433333
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.93 E-value=7.4 Score=30.49 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI-QAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
+..++.+....++|++.+.+.+++++.. . ....+-...+..+|- ..|....+...+....+... +.....
T Consensus 6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~-----~--eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~--~~~~~~ 76 (230)
T d2o02a1 6 LVQKAKLAEQAERYDDMAACMKSVTEQG-----A--ELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE--GAEKKQ 76 (230)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-----S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcC-----C--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHc--Ccchhh
Confidence 5678888899999999999999887661 1 111122222233321 22333344444332211111 101111
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-----HcCCcchHHHHHHHHHHHHHHcC----------ChhHHHHH
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMI-----ANGQENEVAAIDVSIGNIYMSLC----------RFDEAIFS 304 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~ 304 (584)
... .-|.. .=-++-...+...+.++. ...+....+..+-..|..|...- -.+.|...
T Consensus 77 ~~i-------~~yk~-kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~a 148 (230)
T d2o02a1 77 QMA-------REYRE-KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQA 148 (230)
T ss_dssp HHH-------HHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHH-HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 10100 001112222333333322 22333334444445566665332 23479999
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHh
Q 007930 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYY-RIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 305 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 355 (584)
|++|+++......+.+|.......+.+..++ ..|+.++|....++++....
T Consensus 149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai 200 (230)
T d2o02a1 149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI 200 (230)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999887666667777777777766655 57999999999998887654
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=84.45 E-value=8 Score=30.44 Aligned_cols=183 Identities=17% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCC
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIH--REHGHSASLEEAADRRLMALVYEA-KADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
+-+..+|.+..+.++|++.+.+.+++++.. +... .. -.+.+..+|.. .|....+...+..........+.
T Consensus 5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls----~e---ERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~ 77 (236)
T d1o9da_ 5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----VE---ERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 77 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCC----HH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCC
Confidence 446678888899999999999999998652 1111 11 12333333332 23344444444332221111111
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--c-ccHHHHHHHHHHHHHHc-----c-----cHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--H-LSVASIFIRLADLYYRI-----G-----KLRESK 344 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~-~~~~~~~~~la~~~~~~-----g-----~~~~A~ 344 (584)
. ..... ..-|. ..=-++=...+..++++.....-+. + ...+..+-..|..|... | -.+.|.
T Consensus 78 ~-~~~~~----i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~ 151 (236)
T d1o9da_ 78 E-EHVNS----IREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 151 (236)
T ss_dssp H-HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred h-HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence 1 11111 11111 1111233344555555544322111 1 12233333445555432 2 246788
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 007930 345 SYCENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 345 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 397 (584)
..|++|..+..... .+.+|.......+.+..++ ..|+.++|.+..++++...
T Consensus 152 ~aY~~A~~~a~~~l-~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a 204 (236)
T d1o9da_ 152 TAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 204 (236)
T ss_dssp HHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999887543 4445555555566666555 5689999988888776543
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.52 E-value=4.5 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKERLAE 542 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~~l~~ 542 (584)
...|.-+...|+|++|+.+|.++++.+...+. ..++.....+.....
T Consensus 19 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~ 66 (93)
T d1wfda_ 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKIS 66 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34444556789999999999999999887655 334444444443333
|