Citrus Sinensis ID: 007943

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
MVTGNGSGIKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVVTN
ccccccccccccccEEccccccccHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHccccEEcccEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHEEEcHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccc
ccccccccEEEccccccccccccccHHHcHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHccHEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccc
mvtgngsgikkrgcactkqdflpeesfqSWGNYVKALASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGeaarnfagPAVIISYLISGISALLSVLCYTEfsvelpvaggSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLcnhdpgsfrihvssvaedyshldpIAVIVSFFVCVGACLsmkgssrfnsVATIVHIVILIFILITGltqantanyaifapngvrGILKASAVLFFAYVGfdgvatlgeevknpgrdipiglIGSMVITITVYCVLSATlclmqpysqidvdapFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQAryfthigrthmappflaaingktgtpVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYvagetsecdqKKLIVFLALIISSSiassaywatsdngwigYIVTVPVWFLATMGLQLTvkearkpkmwgvpllpwlpsaciAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVVTN
mvtgngsgikkrgcaCTKQDFLPEESFQSWGNYVKALASTRARLKdrlltrsndnlelHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGetsecdqkKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVVTN
MVTGNGSGIKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAtivhivilifilitgltQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANllsistlfifslVALALLVRRYYVAGETSECDQKKLIVFlaliisssiassaYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTflllvyylfvalhaSYDAAKETDRAAEASNMEAVVTN
************GCACTKQDFLPEESFQSWGNYVKALASTRARL**************************KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD********************
**************ACTKQDFL***SF*S*GNYVKALASTRARLKDRLL***********************LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVAL*************************
***********RGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVVTN
********IKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQ*R*RSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDA*******************
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MVTGNGSGIKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVVTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query584 2.2.26 [Sep-21-2011]
Q84MA5594 Cationic amino acid trans yes no 0.984 0.968 0.651 0.0
O64759569 Cationic amino acid trans no no 0.943 0.968 0.538 0.0
Q9SHH0590 Cationic amino acid trans no no 0.946 0.937 0.517 1e-162
Q9LZ20583 Cationic amino acid trans no no 0.914 0.915 0.386 1e-113
Q9SQZ0584 Cationic amino acid trans no no 0.934 0.934 0.378 1e-111
Q09143622 High affinity cationic am yes no 0.885 0.831 0.306 3e-69
P30823624 High affinity cationic am yes no 0.878 0.822 0.299 1e-67
P30825629 High affinity cationic am yes no 0.873 0.810 0.304 5e-66
A8I499657 Low affinity cationic ami no no 0.892 0.792 0.289 1e-64
Q8W4K3600 Cationic amino acid trans no no 0.864 0.841 0.283 5e-64
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/576 (65%), Positives = 472/576 (81%), Gaps = 1/576 (0%)

Query: 1   MVTGNGS-GIKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELH 59
           M +G G  G+++RGC+CTK DFLPEESFQS GNY+KAL  T +R  DR++TRS D+ E++
Sbjct: 1   MASGGGDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEIN 60

Query: 60  QMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISAL 119
           +M+ARS HEMKK L WWDL+WFGIGAV+G+GIFVLTG  ARN +GPAV++SY++SG+SA+
Sbjct: 61  EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120

Query: 120 LSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFAT 179
           LSV CYTEF+VE+PVAGGSFAYLRVELGDF+A+IAAGNI+ EYVV GA+VARSWTSYFAT
Sbjct: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFAT 180

Query: 180 LCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVIL 239
           L NH P  FRI V  + EDYSHLDPIAV V   +CV A +  KGSSRFN +A+I+H+V++
Sbjct: 181 LLNHKPEDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVI 240

Query: 240 IFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPI 299
           +F++I G T+A+  NY+ F P GVRG+ K++AVLFFAY+GFD V+T+ EE KNPGRDIPI
Sbjct: 241 LFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPI 300

Query: 300 GLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMT 359
           GL+GSMV+T   YC+++ TLCLMQPY QID DAPF++AF AVG +WAKYIVA GALKGMT
Sbjct: 301 GLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMT 360

Query: 360 TVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVL 419
           TVLL   IGQARY THI R HM PP+LA +N KTGTP+NATVVM  A +++AFFT L +L
Sbjct: 361 TVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKIL 420

Query: 420 ANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSD 479
           A+LLS+STLFIF  VA+ALLVRRYYV GETS  D+ K +VFL LI++SS A++ YWA  +
Sbjct: 421 ADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEE 480

Query: 480 NGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQS 539
            GWIGY +TVP+WFL+T+ ++  V +AR PK+WGVPL+PWLPSA IA+N+F++GS+D +S
Sbjct: 481 EGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKS 540

Query: 540 FVRFMIWTFLLLVYYLFVALHASYDAAKETDRAAEA 575
           FVRF IWT +LL+YY+   LHA+YD AK T +  +A
Sbjct: 541 FVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQA 576
High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. May function as a proton symporter.
Arabidopsis thaliana (taxid: 3702)
>sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
225444011589 PREDICTED: high affinity cationic amino 0.989 0.981 0.742 0.0
147770658603 hypothetical protein VITISV_010051 [Viti 0.945 0.915 0.749 0.0
255564415535 cationic amino acid transporter, putativ 0.883 0.964 0.787 0.0
225444009606 PREDICTED: high affinity cationic amino 0.977 0.942 0.663 0.0
30685317594 amino acid transporter 1 [Arabidopsis th 0.984 0.968 0.651 0.0
297804044599 hypothetical protein ARALYDRAFT_329490 [ 0.969 0.944 0.659 0.0
224134585602 cationic amino acid transporter [Populus 0.984 0.955 0.650 0.0
255571330587 cationic amino acid transporter, putativ 0.974 0.969 0.663 0.0
449435540582 PREDICTED: cationic amino acid transport 0.981 0.984 0.657 0.0
224120180588 cationic amino acid transporter [Populus 0.953 0.947 0.661 0.0
>gi|225444011|ref|XP_002274916.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/582 (74%), Positives = 506/582 (86%), Gaps = 4/582 (0%)

Query: 3   TGNGSGI-KKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELHQM 61
           T  G G+ +KRGC  TK+DFLPEESFQSWG YVKAL +T ARLKDR+LTRS D +ELH +
Sbjct: 4   TSEGGGVARKRGCGWTKEDFLPEESFQSWGTYVKALGNTTARLKDRVLTRSLDEVELHAV 63

Query: 62  RARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLS 121
           R RS++EMKK LNWWDL+WFGIGAVMG+GIFVLTGEAA  +AGPAV++SY ISG+SA+LS
Sbjct: 64  RDRSKNEMKKTLNWWDLLWFGIGAVMGSGIFVLTGEAANEYAGPAVVLSYFISGVSAILS 123

Query: 122 VLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLC 181
           VLCYTEF+VELPVAGGSFAYLRVELGDFVAY+AAGNILFEYVV+GA VARSWTSYFATLC
Sbjct: 124 VLCYTEFAVELPVAGGSFAYLRVELGDFVAYVAAGNILFEYVVAGAGVARSWTSYFATLC 183

Query: 182 NHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIF 241
           NHDP  FR + SS+AE Y+ LDPIAV VS  VCV A LSMKGSSRFNS+A+IVH+VI+ F
Sbjct: 184 NHDPNDFRFYASSLAEGYNRLDPIAVAVSIVVCVLASLSMKGSSRFNSIASIVHMVIIAF 243

Query: 242 ILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGL 301
           +L+ GLT+A++AN+  FAP G+RGILKAS++LFFAYVGFDG  TLGEE+K P RDIPIGL
Sbjct: 244 MLVAGLTKADSANFKDFAPFGLRGILKASSMLFFAYVGFDGTTTLGEEIKKPARDIPIGL 303

Query: 302 IGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTV 361
           IGSM + + VYC+L+ATL LMQPY+QIDVDAP+++AF AVGM+WAKYIVA GALKGMTTV
Sbjct: 304 IGSMSLVMIVYCLLAATLVLMQPYAQIDVDAPYSVAFSAVGMDWAKYIVAFGALKGMTTV 363

Query: 362 LLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLAN 421
           LLAN+IGQARYFTHIGRTHMAPPFLA IN KTGTPVNATV M++ANSV+AFFTSLDVLAN
Sbjct: 364 LLANIIGQARYFTHIGRTHMAPPFLATINKKTGTPVNATVFMTIANSVIAFFTSLDVLAN 423

Query: 422 LLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNG 481
           LLSISTLFIFSLVALALLVRRYYV+GETS+ D+ K I FL LI+ SSI+ + YWA S +G
Sbjct: 424 LLSISTLFIFSLVALALLVRRYYVSGETSDSDRNKFIGFLVLILGSSISMAVYWAVSQHG 483

Query: 482 WIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFV 541
           WIGYIV   VWFLAT+GL +T+K+ RKPK+WG P++PWLPSA IA+NVF++GS+DG SF 
Sbjct: 484 WIGYIVGGAVWFLATLGLHVTMKQGRKPKIWGAPIVPWLPSASIAINVFILGSMDGSSFA 543

Query: 542 RFMIWTFLLLVYYLFVALHASYDAAKETDRA---AEASNMEA 580
           RF +WT +LLVYYLFV LHASYDAAK   +    ++A++MEA
Sbjct: 544 RFAVWTGILLVYYLFVGLHASYDAAKVAQKEVQVSQATSMEA 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147770658|emb|CAN73404.1| hypothetical protein VITISV_010051 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564415|ref|XP_002523204.1| cationic amino acid transporter, putative [Ricinus communis] gi|223537611|gb|EEF39235.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225444009|ref|XP_002281463.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera] gi|359483932|ref|XP_003633038.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30685317|ref|NP_193844.2| amino acid transporter 1 [Arabidopsis thaliana] gi|75297892|sp|Q84MA5.1|CAAT1_ARATH RecName: Full=Cationic amino acid transporter 1; AltName: Full=Amino acid transporter 1 gi|30102670|gb|AAP21253.1| At4g21120 [Arabidopsis thaliana] gi|110743257|dbj|BAE99519.1| amino acid transport protein AAT1 [Arabidopsis thaliana] gi|332659005|gb|AEE84405.1| amino acid transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297804044|ref|XP_002869906.1| hypothetical protein ARALYDRAFT_329490 [Arabidopsis lyrata subsp. lyrata] gi|297315742|gb|EFH46165.1| hypothetical protein ARALYDRAFT_329490 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224134585|ref|XP_002321859.1| cationic amino acid transporter [Populus trichocarpa] gi|222868855|gb|EEF05986.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571330|ref|XP_002526614.1| cationic amino acid transporter, putative [Ricinus communis] gi|223534054|gb|EEF35773.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435540|ref|XP_004135553.1| PREDICTED: cationic amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224120180|ref|XP_002318265.1| cationic amino acid transporter [Populus trichocarpa] gi|222858938|gb|EEE96485.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
TAIR|locus:2127398594 AAT1 "AT4G21120" [Arabidopsis 0.984 0.968 0.600 8.3e-193
TAIR|locus:2044682569 CAT5 "AT2G34960" [Arabidopsis 0.943 0.968 0.495 1.3e-148
TAIR|locus:2020387590 CAT8 "cationic amino acid tran 0.940 0.930 0.467 4.2e-134
TAIR|locus:2075745584 CAT7 "cationic amino acid tran 0.945 0.945 0.346 6.8e-95
TAIR|locus:2175488583 CAT6 "AT5G04770" [Arabidopsis 0.878 0.879 0.358 1.4e-94
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.815 0.621 0.326 1.4e-73
ZFIN|ZDB-GENE-070912-112 785 slc7a14a "solute carrier famil 0.652 0.485 0.316 1.4e-60
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.683 0.655 0.301 2.9e-60
WB|WBGene00016806589 C50D2.2 [Caenorhabditis elegan 0.655 0.650 0.328 3.8e-60
WB|WBGene00017747583 F23F1.6 [Caenorhabditis elegan 0.664 0.665 0.316 7.8e-60
TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 346/576 (60%), Positives = 427/576 (74%)

Query:     1 MVTGNGS-GIKKRGCACTKQDFLPEESFQSWGNYVKALASTRARLKDRLLTRSNDNLELH 59
             M +G G  G+++RGC+CTK DFLPEESFQS GNY+KAL  T +R  DR++TRS D+ E++
Sbjct:     1 MASGGGDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEIN 60

Query:    60 QMRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISAL 119
             +M+ARS HEMKK L WWDL+WFGIGAV+G+GIFVLTG  ARN +GPAV++SY++SG+SA+
Sbjct:    61 EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120

Query:   120 LSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFAT 179
             LSV CYTEF+VE+PVAGGSFAYLRVELGDF+A+IAAGNI+ EYVV GA+VARSWTSYFAT
Sbjct:   121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFAT 180

Query:   180 LCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAXXXXXXXX 239
             L NH P  FRI V  + EDYSHLDPIAV V   +CV A +  KGSSRFN +A        
Sbjct:   181 LLNHKPEDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVI 240

Query:   240 XXXXXXXXXQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPI 299
                      +A+  NY+ F P GVRG+ K++AVLFFAY+GFD V+T+ EE KNPGRDIPI
Sbjct:   241 LFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPI 300

Query:   300 GLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMT 359
             GL+GSMV+T   YC+++ TLCLMQPY QID DAPF++AF AVG +WAKYIVA GALKGMT
Sbjct:   301 GLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMT 360

Query:   360 TVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVL 419
             TVLL   IGQARY THI R HM PP+LA +N KTGTP+NATVVM  A +++AFFT L +L
Sbjct:   361 TVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKIL 420

Query:   420 ANXXXXXXXXXXXXVALALLVRRYYVAGETSECDQKKLIVFXXXXXXXXXXXXXYWATSD 479
             A+            VA+ALLVRRYYV GETS  D+ K +VF             YWA  +
Sbjct:   421 ADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEE 480

Query:   480 NGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQS 539
              GWIGY +TVP+WFL+T+ ++  V +AR PK+WGVPL+PWLPSA IA+N+F++GS+D +S
Sbjct:   481 EGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKS 540

Query:   540 FVRFMIWTXXXXXXXXXXXXXXSYDAAKETDRAAEA 575
             FVRF IWT              +YD AK T +  +A
Sbjct:   541 FVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQA 576
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=IGI;ISS
GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IGI
GO:0015181 "arginine transmembrane transporter activity" evidence=IGI
GO:0015189 "L-lysine transmembrane transporter activity" evidence=IGI
GO:0043091 "L-arginine import" evidence=IGI
GO:0051938 "L-glutamate import" evidence=IGI
GO:0005886 "plasma membrane" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=IGI;RCA
GO:0015824 "proline transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-112 slc7a14a "solute carrier family 7 (cationic amino acid transporter, y+ system), member 14a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00017747 F23F1.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84MA5CAAT1_ARATHNo assigned EC number0.65100.98450.9680yesno
P30825CTR1_HUMANNo assigned EC number0.30480.87320.8108yesno
Q09143CTR1_MOUSENo assigned EC number0.30600.88520.8311yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AAT1
AAT1 (AMINO ACID TRANSPORTER 1); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter; Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. (594 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
ACAT2
ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic; ACETOACETYL-COA [...] (403 aa)
    •   0.829
LTH1
LHT1; amino acid transmembrane transporter; Encodes LHT1 (lysine histidine transporter), a high [...] (446 aa)
   •  • 0.722
CYP81D2
CYP81D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; mem [...] (499 aa)
      • 0.539
PROT2
PROT2 (PROLINE TRANSPORTER 2); L-proline transmembrane transporter/ amino acid transmembrane tr [...] (439 aa)
      • 0.537
AAP3
AAP3; amino acid transmembrane transporter; Amino acid permease which transports basic amino ac [...] (476 aa)
      • 0.534
AT4G15610
integral membrane family protein; integral membrane family protein; FUNCTIONS IN- molecular_fun [...] (193 aa)
   •    0.504
AAP4
AAP4; acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutra [...] (466 aa)
      • 0.502
ATH2
ATATH2; ATPase, coupled to transmembrane movement of substances / transporter; member of ATH su [...] (947 aa)
      • 0.501
AAP5
AAP5; amino acid transmembrane transporter/ basic amino acid transmembrane transporter; amino a [...] (480 aa)
      • 0.467
AT1G31820
amino acid permease family protein; amino acid permease family protein; FUNCTIONS IN- cationic [...] (482 aa)
  •     0.462

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 0.0
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 3e-72
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 2e-49
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 8e-30
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-23
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 1e-22
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 8e-22
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 2e-21
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 1e-17
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 7e-16
PRK10580457 PRK10580, proY, putative proline-specific permease 9e-14
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 2e-13
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 3e-12
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 3e-12
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 4e-12
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 2e-10
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 3e-10
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 4e-10
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 1e-07
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 2e-07
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 4e-07
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 4e-07
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 6e-07
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 2e-06
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 3e-06
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 5e-06
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 7e-06
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 3e-05
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 7e-04
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 0.003
COG3949349 COG3949, COG3949, Uncharacterized membrane protein 0.003
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  564 bits (1454), Expect = 0.0
 Identities = 205/540 (37%), Positives = 306/540 (56%), Gaps = 36/540 (6%)

Query: 61  MRARSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALL 120
           + +R E +MK+ L  WDL+  GIG+ +GAGI+VLTGE ARN +GPA+++S+LISG++A+L
Sbjct: 18  LDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVL 77

Query: 121 SVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATL 180
           S  CY EF   +P AG ++ Y  V +G+  A+I   N++ EYV+  A+VARSW++YF  L
Sbjct: 78  SGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDEL 137

Query: 181 CNHDPGSFRIHVSSVAEDYS--HLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVI 238
            N   G FR     +  D    + D  AV +   + V     +K S+  N + T ++I++
Sbjct: 138 LNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILV 197

Query: 239 LIFILITGLTQANTANYAI--------FAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290
           L+F++I G T+A+ AN++I        F P G  G+L  +A  FFA++GFD +AT GEEV
Sbjct: 198 LLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV 257

Query: 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIV 350
           KNP R IPIG++ S+++    Y ++SA L LM PY  +D DAPF +AF+ VG   AKYIV
Sbjct: 258 KNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIV 317

Query: 351 ALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVV 410
           A+GAL GM+T LL  +    R    + R  +   +LA IN KT TP+NATVV     +++
Sbjct: 318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALM 377

Query: 411 AFFTSLDVLANLLSISTLFIFSLVALALLVRRYYV------AGETSECDQKK-------- 456
           AF   L  L +LLSI TL  +SLVA  +L+ RY        A +T E D           
Sbjct: 378 AFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSK 437

Query: 457 ----------LIVFLALIISSSIASSAYW-ATSDNGW-IGYIVTVPVWFLATMGLQLTVK 504
                       +F  LI+  SI ++    A ++  W I  +    V FL  +       
Sbjct: 438 SESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQP 497

Query: 505 EARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD 564
           + ++   + VPL+P+LP+  I +N+F+M  +D  ++VRF IW  +  + Y    +  S +
Sbjct: 498 QNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|226458 COG3949, COG3949, Uncharacterized membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 584
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK11021410 putative transporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.94
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.93
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.93
PHA02764399 hypothetical protein; Provisional 99.87
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.85
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.84
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.83
TIGR00814397 stp serine transporter. The HAAAP family includes 99.8
PRK09664415 tryptophan permease TnaB; Provisional 99.78
PRK10483414 tryptophan permease; Provisional 99.78
PRK15132403 tyrosine transporter TyrP; Provisional 99.76
PF03845320 Spore_permease: Spore germination protein; InterPr 99.73
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.7
PRK13629443 threonine/serine transporter TdcC; Provisional 99.68
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.41
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.35
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.35
PLN03074473 auxin influx permease; Provisional 99.33
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.28
PRK11375484 allantoin permease; Provisional 99.21
PTZ00206467 amino acid transporter; Provisional 99.21
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.19
COG3949349 Uncharacterized membrane protein [Function unknown 99.1
COG1457442 CodB Purine-cytosine permease and related proteins 98.97
PF1390651 AA_permease_C: C-terminus of AA_permease 98.92
PRK11017404 codB cytosine permease; Provisional 98.85
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.81
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.77
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.73
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.67
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.64
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.6
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.57
TIGR00813407 sss transporter, SSS family. have different number 98.56
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.41
PRK15419502 proline:sodium symporter PutP; Provisional 98.4
PRK12488549 acetate permease; Provisional 98.4
PRK09395551 actP acetate permease; Provisional 98.37
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.25
PRK10484523 putative transporter; Provisional 98.23
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.22
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.19
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.18
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.14
PRK00701439 manganese transport protein MntH; Reviewed 98.13
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.11
PLN00151 852 potassium transporter; Provisional 98.06
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.02
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.9
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.9
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.9
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.85
PRK15433439 branched-chain amino acid transport system 2 carri 97.54
PLN00149 779 potassium transporter; Provisional 97.45
PLN00150 779 potassium ion transporter family protein; Provisio 97.43
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.35
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 97.33
PLN00148 785 potassium transporter; Provisional 97.25
PRK10745622 trkD potassium transport protein Kup; Provisional 97.1
PRK09950506 putative transporter; Provisional 96.81
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.74
COG1292537 BetT Choline-glycine betaine transporter [Cell env 96.6
PRK09928679 choline transport protein BetT; Provisional 96.56
COG4147529 DhlC Predicted symporter [General function predict 96.16
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 96.1
KOG2466572 consensus Uridine permease/thiamine transporter/al 95.95
TIGR00842453 bcct choline/carnitine/betaine transport. properti 95.68
TIGR00911501 2A0308 L-type amino acid transporter. 95.37
KOG4303524 consensus Vesicular inhibitory amino acid transpor 95.19
KOG1287479 consensus Amino acid transporters [Amino acid tran 94.81
COG3158627 Kup K+ transporter [Inorganic ion transport and me 93.52
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 91.73
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 91.26
PF05297 381 Herpes_LMP1: Herpesvirus latent membrane protein 1 90.26
COG4146571 Predicted symporter [General function prediction o 83.07
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=3.6e-65  Score=548.13  Aligned_cols=500  Identities=39%  Similarity=0.655  Sum_probs=410.9

Q ss_pred             cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943           65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV  144 (584)
Q Consensus        65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~  144 (584)
                      ++++++|+++.+|+++++++.++|+|+|..++..+...+||..+++|+++++.+++.+++|+|+++++|++||.|.|+++
T Consensus        22 ~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~  101 (557)
T TIGR00906        22 EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYV  101 (557)
T ss_pred             cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHH
Confidence            34569999999999999999999999999999887655999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceecccc--ccccCcchhHHHHHHHHHHHHHhccch
Q 007943          145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSV--AEDYSHLDPIAVIVSFFVCVGACLSMK  222 (584)
Q Consensus       145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (584)
                      .+||.+||++||.++++|....+..+..++.|+..+++.....+.......  +........++++++++.+.+|.+|+|
T Consensus       102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik  181 (557)
T TIGR00906       102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK  181 (557)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence            999999999999999999999999999999999887753211111000000  000012346677778888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--------CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCC
Q 007943          223 GSSRFNSVATIVHIVILIFILITGLTQANTANYA--------IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPG  294 (584)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~  294 (584)
                      ..+|++.+++.++++.++++++.++.+.+.+|+.        ++.|.++.+++.+...++|+|.|+|.+++++||+|||+
T Consensus       182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~  261 (557)
T TIGR00906       182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ  261 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence            9999999999999999988888888777666654        66777888899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007943          295 RDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFT  374 (584)
Q Consensus       295 r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  374 (584)
                      ||+||+++.++.+++++|++..+++....|+++++.++|+..+++..|.++...++.++++.+.+++.++.+++.+|+++
T Consensus       262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~  341 (557)
T TIGR00906       262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY  341 (557)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888999999988988999999999999999999999999999999


Q ss_pred             HHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-c--
Q 007943          375 HIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETS-E--  451 (584)
Q Consensus       375 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~-~--  451 (584)
                      +|||||.+|++|+|+|||+++|++|++++++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.... |  
T Consensus       342 amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~  421 (557)
T TIGR00906       342 AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKD  421 (557)
T ss_pred             HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            9999999999999999999999999999999998888888999999999999999999999999999976521000 0  


Q ss_pred             ---------------------cchhHHHHHHHHHHHHHhHhhhhccccCCCcchh--hHHHHHHHHHHHHHhhhhhccCC
Q 007943          452 ---------------------CDQKKLIVFLALIISSSIASSAYWATSDNGWIGY--IVTVPVWFLATMGLQLTVKEARK  508 (584)
Q Consensus       452 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  508 (584)
                                           .+...-..+...++...+.+...+..-...++..  ....+++.+.......+.++...
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (557)
T TIGR00906       422 TDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQ  501 (557)
T ss_pred             ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                                 0000001111222222222222222111122222  22223333333333344444445


Q ss_pred             CCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943          509 PKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD  564 (584)
Q Consensus       509 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~  564 (584)
                      +++||+|+.|++|.++++.|++++.+++..+|+.+..|+++|+++|+.|++||+++
T Consensus       502 ~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       502 KVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            88999999999999999999999999999999999999999999999999999864

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 1e-15
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 1e-15
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 3e-08
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 3e-08
3lrb_A445 Structure Of E. Coli Adic Length = 445 2e-07
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 3e-07
4dji_A511 Structure Of Glutamate-Gaba Antiporter Gadc Length 1e-04
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 22/326 (6%)
Query: 68  EMK-KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYT 126
           E+K K L+ W+ +   +G ++GA IF + G  A+  AG  +  ++++SGI ALL    YT
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYT 60
Query: 127 EFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL-FEYVVSGASVARSWTSYFATLCNHDP 185
           +   ++    G  A++   +GD +   A   +L   YV+S A  A+ +  YF  L N   
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120
Query: 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMK-GSSRFNSVAXXXXXXXXXXXXX 244
            +F I ++ +            IV+FF  +    S   G + F  V              
Sbjct: 121 NTFNIAITEIG-----------IVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAG 169
Query: 245 XXXXQANTANYAI--FAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI 302
                    +Y I   AP+ V G++ ASA+ F +Y+GF  +    E ++NP +++P  + 
Sbjct: 170 LITIH---PSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIF 226
Query: 303 GSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGM--NWAKYIVALGALKGMTT 360
            S++I + VY  ++ +     P  ++   +   LA  A     N    ++++GAL  +++
Sbjct: 227 ISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISS 286
Query: 361 VLLANVIGQARYFTHIGRTHMAPPFL 386
            + A + G A     + +    P F 
Sbjct: 287 AMNATIYGGANVAYSLAKDGELPEFF 312
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc Length = 511 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-108
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-69
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 1e-60
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  330 bits (848), Expect = e-108
 Identities = 86/427 (20%), Positives = 174/427 (40%), Gaps = 28/427 (6%)

Query: 67  HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYT 126
               K L+ W+ +   +G ++GA IF + G  A   AG  +  ++++SGI ALL    YT
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYT 60

Query: 127 EFSVELPVAGGSFAYLRVELGD-FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP 185
           +   ++    G  A++   +GD  +    +  +   YV+S A  A+ +  YF  L N   
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120

Query: 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILIT 245
            +F I                + +  F         K   R      +V ++IL   +  
Sbjct: 121 NTFNI------------AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168

Query: 246 GLTQANTANYA-IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGS 304
           GL   + +      AP+ V G++ ASA+ F +Y+GF  +    E ++NP +++P  +  S
Sbjct: 169 GLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228

Query: 305 MVITITVYCVLSATLCLMQPYSQIDV--DAPFTLAFQAVGMNWAKYIVALGALKGMTTVL 362
           ++I + VY  ++ +     P  ++    +    +A +    N    ++++GAL  +++ +
Sbjct: 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM 288

Query: 363 LANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANL 422
            A + G A     + +    P F                + S    + A   +++ +A++
Sbjct: 289 NATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFNMEGVASI 346

Query: 423 LSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWAT--SDN 480
            S   + I+  V L+  +          E   +K IV  + I+   +     +    ++ 
Sbjct: 347 TSAVFMVIYLFVILSHYILID-------EVGGRKEIVIFSFIVVLGVFLLLLYYQWITNR 399

Query: 481 GWIGYIV 487
                I+
Sbjct: 400 FVFYGII 406
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.3
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.83
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.71
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.14
4ain_A539 Glycine betaine transporter BETP; membrane protein 96.14
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 95.76
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=2.3e-52  Score=443.00  Aligned_cols=420  Identities=19%  Similarity=0.286  Sum_probs=358.4

Q ss_pred             cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHh
Q 007943           67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVEL  146 (584)
Q Consensus        67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~  146 (584)
                      ++.||+++.++..++.++.++|+|+|..++.. .. +||..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            45689999999999999999999999998874 44 78888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943          147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR  226 (584)
Q Consensus       147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (584)
                      ||.+|+..||.+++++....+.++..++++++..++.....+            ...+++++++++.+.+|++|+|..++
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW------------VLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH------------HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH------------HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            999999999999999999999999999888876654211111            12367788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCCCC-CCCCCc---hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHH
Q 007943          227 FNSVATIVHIVILIFILITGLTQANTANYA-IFAPNG---VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI  302 (584)
Q Consensus       227 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~  302 (584)
                      ++.+++.++++.++++++.++.+.+++++. ++.+.+   +.+++.++...+|+|.|+|.+++++||+|||+|++||++.
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~  229 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence            999999999999988888877766655542 344433   5678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 007943          303 GSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHM  381 (584)
Q Consensus       303 ~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~  381 (584)
                      .+..+++++|++..++.....|.+++. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~  309 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL  309 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999888888774 4679999999888889999999999999999999999999999999999999


Q ss_pred             CchhhhcccCccccchHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccch
Q 007943          382 APPFLAAINGKTGTPVNATVVMSLANSVVAFF-------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQ  454 (584)
Q Consensus       382 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~  454 (584)
                      +|++|+|+| |+++|+++++++.+++.++.+.       ..++.+.++.+.+.++.|.+.+++++++|+|+| ++     
T Consensus       310 lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~-----  382 (445)
T 3l1l_A          310 FPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK-----  382 (445)
T ss_dssp             SCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG-----
T ss_pred             CcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc-----
Confidence            999999999 6799999999999988766654       357899999999999999999999999887743 10     


Q ss_pred             hHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhc
Q 007943          455 KKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGS  534 (584)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  534 (584)
                                                                                |.|..|+++.++.+.+++++..
T Consensus       383 ----------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~  404 (445)
T 3l1l_A          383 ----------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVG  404 (445)
T ss_dssp             ----------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------ccchhHHHHHHHHHHHHHHHHH
Confidence                                                                      2245677888888888888888


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhhhcccch
Q 007943          535 VDGQSFVRFMIWTFLLLVYYLFVALHASYDA  565 (584)
Q Consensus       535 ~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~  565 (584)
                      .++.......+++++|+.+|+.++||++++.
T Consensus       405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  435 (445)
T 3l1l_A          405 SGAKEVMWSFVTLMVITAMYALNYNRLHKNP  435 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            8888888888899999999987766655443
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.50  E-value=0.037  Score=55.84  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHH----HHHHHHHHHHHhhhhccc
Q 007943           74 NWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISG----ISALLSVLCYTEFSVELP  133 (584)
Q Consensus        74 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~----l~~~~~~~~~~el~~~~P  133 (584)
                      +..+.+.-.+|..+|.|-+...+......||..-++.+++..    +..+..=+++++.+++-|
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~   69 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG   69 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            445667777888899888877777766657765444443333    333334445555544444