Citrus Sinensis ID: 007944

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
MATPLNKRFSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGTGSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
ccccccccccHHHHHccEEEEcccccccEEEEEccEEEEEHHHHHHHHcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccc
ccccccccccHHHcccccEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEEcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEHHHHccccccccccccccccccccccccccccccccccccccc
matplnkrfssakertgqwvfsqeiptDIVVAVGEANFPLHKFMLVAKSNYIRKLIIEskeadltrinlsnipggpeMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCEnnlagrteDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKacyeanfpcrtppnwwteelsiIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVrdhsagngtkssdaqstnSQVRYQQRELLESIVSlmpsekaafpINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSftydgerlfDLESVRKIISGFVEKEKSMAVfsgsgdfrescscspamHRVAKTVGTYLGeiatsgelsiskfngianlvpkgsrkvddDLYRAIDIYLkahpnldeiEREKicssmdplkLSYEARVHasqnkrlpVQIVLHALYYDQLklrsgldndrstpdaAATRNQLQADVLLIKENEALRSELTRMKLYISDVqkgnnqagtgsssksgtsghkkhtffssmsktfgklnpfkhgskdtsnidddvaamdgtkprrrrfsis
matplnkrfssakertgqwvfsqeiPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIeskeadltrinLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAgngtkssdaqstnsQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATsgelsiskfngianlvpkgsrkvdDDLYRAIDIYlkahpnldeieREKICSSMDPLKLSYEARVHasqnkrlpvQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQagtgsssksgtsghKKHTFFSSMSKTFGKLNPFKhgskdtsnidddvaamdgtkprrrrfsis
MATPLNKRFSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFlsqvalsslsgavvvlKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAgtgsssksgtsghkkhtFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
****************GQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRD******************************LESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLR********************ADVLLIKENEALRSELTRMKLYI************************************************************************
***************TGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYI****************LSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRD********************YQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFV***************************VAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAH******EREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYY*********************************************************************************************************************F***
***************TGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHS*****************RYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQK*******************KHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGT**********
***************TGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRD***********************RYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEK*****************SPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLD****************ADVLLIKENEALRSELTRMKLYISDVQKG******************************************************************
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MATPLNKRFSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGTGSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query584 2.2.26 [Sep-21-2011]
Q682S0593 Root phototropism protein yes no 0.994 0.979 0.716 0.0
Q66GP0604 BTB/POZ domain-containing no no 0.912 0.882 0.391 1e-116
Q9FKB6614 BTB/POZ domain-containing no no 0.880 0.837 0.370 1e-104
Q9C9Z7617 BTB/POZ domain-containing no no 0.890 0.842 0.345 4e-91
O82253635 BTB/POZ domain-containing no no 0.892 0.820 0.336 9e-90
Q9SA69634 BTB/POZ domain-containing no no 0.898 0.828 0.328 3e-89
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.885 0.888 0.351 2e-88
Q9S9Q9665 BTB/POZ domain-containing no no 0.789 0.693 0.378 2e-88
Q9FNB3591 Putative BTB/POZ domain-c no no 0.755 0.746 0.369 3e-82
Q9LYW0592 BTB/POZ domain-containing no no 0.777 0.766 0.353 2e-81
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/596 (71%), Positives = 499/596 (83%), Gaps = 15/596 (2%)

Query: 1   MAT----PLN-KRFSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKL 55
           MAT    P+N    SS+  RTGQWVFSQ+IPTD+VV VGEANF LHKFMLVAKSNYIRKL
Sbjct: 1   MATEGKNPINMNSMSSSLARTGQWVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKL 60

Query: 56  IIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYC 115
           I+ESK++D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL CAAEFLQMTDKYC
Sbjct: 61  IMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYC 120

Query: 116 ENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANF 175
           +NNLAGRT+DFLSQVALSSLSGA+VVLKSCE LLP++ DL IV+RC+DV  AKAC EA F
Sbjct: 121 DNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMF 180

Query: 176 PCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAG 235
           PCRTPPNWWTEEL I+D++FFS ++++MK+RG K  ++ASA+ITYTE+SLRDLVRDHS G
Sbjct: 181 PCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHS-G 239

Query: 236 NGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKN 295
            G K SD     S  R QQR+L++SIVSL+PS+K  FP+NFLC LLR A+FL  S +CKN
Sbjct: 240 RGVKYSDPGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKN 299

Query: 296 ELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFR 355
           ELEKR+S +LEHVSVDDLL+ SFTYDGERL DL+SVR+IIS FVEKEK++ VF+G GDF 
Sbjct: 300 ELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNG-GDFN 358

Query: 356 ESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYL 415
               CS ++ RVAKTV +YL EIAT G+L+ISKFN IANLVPK +RK DDDLYRAIDI+L
Sbjct: 359 RGV-CSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFL 417

Query: 416 KAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGL--D 473
           KAHPNLDEIEREK+CSSMDPLKLSY+AR+HASQNKRLPV IVLHALYYDQLKLRSG+   
Sbjct: 418 KAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYYDQLKLRSGVAEQ 477

Query: 474 NDRST---PDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGT--GSSS 528
            +R+    P+A  TR+QLQAD  L KENEALRSEL +MK+Y+SD+QK  N AG    +SS
Sbjct: 478 EERAVVVLPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKNKNGAGASSSNSS 537

Query: 529 KSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS 584
              +S   KHTFFSS+SK  GKLNPFK+GSKDTS+ID+D+  +D TKPRRRRFSIS
Sbjct: 538 SLVSSKKSKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGVDITKPRRRRFSIS 593
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Necessary for root phototropism. Involved in hypocotyl phototropism under high rate but not under low rate light. Regulates stomata opening. Seems to be not involved in chloroplast accumulation and translocation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
225434311572 PREDICTED: root phototropism protein 2 [ 0.976 0.996 0.776 0.0
224145407575 predicted protein [Populus trichocarpa] 0.982 0.998 0.760 0.0
224126993578 predicted protein [Populus trichocarpa] 0.982 0.993 0.768 0.0
449459992582 PREDICTED: root phototropism protein 2-l 0.972 0.975 0.757 0.0
302398627577 BZIP domain class transcription factor [ 0.984 0.996 0.735 0.0
302398617577 BZIP domain class transcription factor [ 0.982 0.994 0.737 0.0
302398625577 BZIP domain class transcription factor [ 0.982 0.994 0.739 0.0
297826469593 hypothetical protein ARALYDRAFT_481966 [ 0.994 0.979 0.713 0.0
30684610593 Root phototropism protein 2 [Arabidopsis 0.994 0.979 0.716 0.0
110741270593 hypothetical protein [Arabidopsis thalia 0.994 0.979 0.716 0.0
>gi|225434311|ref|XP_002264896.1| PREDICTED: root phototropism protein 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/586 (77%), Positives = 507/586 (86%), Gaps = 16/586 (2%)

Query: 1   MATPL--NKRFSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIE 58
           MA  L  N R S A ERTGQWVFSQEIPTD+VV VGEANF LHKFMLVAKSNYIRKLI+E
Sbjct: 1   MAASLKGNNRRSLAMERTGQWVFSQEIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIME 60

Query: 59  SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENN 118
           SKEADLT I+LS+IPGGPE+FEKAAKFCYGVNFEITVHNVAALRCAAE+LQMTDKYC+ N
Sbjct: 61  SKEADLTNIDLSDIPGGPEIFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDKYCDGN 120

Query: 119 LAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCR 178
           L+GRTEDFL QVAL+SLSGAVVVLKSCE LLP AE+L IVQRC+DVA+ KAC EANFP R
Sbjct: 121 LSGRTEDFLKQVALTSLSGAVVVLKSCEDLLPKAEELKIVQRCVDVASTKACNEANFPSR 180

Query: 179 TPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGT 238
           +PPNWWTEELSI+DI FF +IIAAMK RGAK+LT+ASALITYTER+LRDLVRDH+ GNG 
Sbjct: 181 SPPNWWTEELSILDIGFFEKIIAAMKLRGAKSLTVASALITYTERTLRDLVRDHT-GNGI 239

Query: 239 KSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELE 298
           +SSD + +N  +R +QRELLE+IV L+PSE+AA PINFLCCLLRSAIFLK + +CKNELE
Sbjct: 240 RSSDTEDSN--LRSRQRELLEAIVVLLPSERAALPINFLCCLLRSAIFLKVAHTCKNELE 297

Query: 299 KRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESC 358
           KR+S ILEHV+VDDLLVLSFTYDGERLFDL+SVR+IISGFVEKEKS+AVF+G GDF+E C
Sbjct: 298 KRISTILEHVTVDDLLVLSFTYDGERLFDLDSVRRIISGFVEKEKSVAVFNG-GDFQEVC 356

Query: 359 SCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAH 418
           S   AM RVAKTV  YLGEIA  GELSI KFNGIANLVPK +RKVDDDLYRAIDI+LKAH
Sbjct: 357 ST--AMQRVAKTVDAYLGEIAAHGELSICKFNGIANLVPKDARKVDDDLYRAIDIFLKAH 414

Query: 419 PNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRST 478
           PNLDEIEREK+CS MDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSG D+    
Sbjct: 415 PNLDEIEREKVCSVMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGADD---A 471

Query: 479 PDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGTGSSSKSGTSGHKKH 538
            DA +TR+ LQADV L++ENEALRSEL +MK+YISD+QK ++  G               
Sbjct: 472 HDAMSTRSHLQADVSLVRENEALRSELMKMKMYISDIQKNSSAGGGKGLGGGSKKP---- 527

Query: 539 TFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS 584
           TFFSSMSKT GKLNPF+HGSKDTSNIDD+  A+D TKPRRRRFSIS
Sbjct: 528 TFFSSMSKTLGKLNPFRHGSKDTSNIDDE-TAVDVTKPRRRRFSIS 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145407|ref|XP_002325631.1| predicted protein [Populus trichocarpa] gi|222862506|gb|EEF00013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126993|ref|XP_002319980.1| predicted protein [Populus trichocarpa] gi|222858356|gb|EEE95903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459992|ref|XP_004147730.1| PREDICTED: root phototropism protein 2-like [Cucumis sativus] gi|449514615|ref|XP_004164428.1| PREDICTED: root phototropism protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302398627|gb|ADL36608.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302398617|gb|ADL36603.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302398625|gb|ADL36607.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|297826469|ref|XP_002881117.1| hypothetical protein ARALYDRAFT_481966 [Arabidopsis lyrata subsp. lyrata] gi|297326956|gb|EFH57376.1| hypothetical protein ARALYDRAFT_481966 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30684610|ref|NP_850147.1| Root phototropism protein 2 [Arabidopsis thaliana] gi|82581610|sp|Q682S0.2|RPT2_ARATH RecName: Full=Root phototropism protein 2; AltName: Full=BTB/POZ domain-containing protein RPT2 gi|14334780|gb|AAK59568.1| unknown protein [Arabidopsis thaliana] gi|15810641|gb|AAL07245.1| unknown protein [Arabidopsis thaliana] gi|23397072|gb|AAN31821.1| unknown protein [Arabidopsis thaliana] gi|62319969|dbj|BAD94074.1| hypothetical protein [Arabidopsis thaliana] gi|62321322|dbj|BAD94572.1| hypothetical protein [Arabidopsis thaliana] gi|62321760|dbj|BAD95385.1| hypothetical protein [Arabidopsis thaliana] gi|110739366|dbj|BAF01595.1| hypothetical protein [Arabidopsis thaliana] gi|110739529|dbj|BAF01673.1| hypothetical protein [Arabidopsis thaliana] gi|110741366|dbj|BAF02233.1| hypothetical protein [Arabidopsis thaliana] gi|330253307|gb|AEC08401.1| Root phototropism protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110741270|dbj|BAF02185.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
TAIR|locus:2064357593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.989 0.974 0.682 2.1e-212
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.847 0.819 0.392 1.1e-101
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.929 0.884 0.358 2.4e-83
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.508 0.446 0.375 2.8e-82
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.493 0.487 0.366 5.2e-77
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.489 0.483 0.350 2.5e-75
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.832 0.787 0.337 4.5e-75
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.895 0.898 0.334 1.5e-74
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.472 0.413 0.372 4.3e-74
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.268 0.210 0.443 5.2e-74
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2053 (727.8 bits), Expect = 2.1e-212, P = 2.1e-212
 Identities = 402/589 (68%), Positives = 471/589 (79%)

Query:     4 PLNKR-FSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEA 62
             P+N    SS+  RTGQWVFSQ+IPTD+VV VGEANF LHKFMLVAKSNYIRKLI+ESK++
Sbjct:     8 PINMNSMSSSLARTGQWVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDS 67

Query:    63 DLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGR 122
             D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL CAAEFLQMTDKYC+NNLAGR
Sbjct:    68 DVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGR 127

Query:   123 TEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPN 182
             T+DF                KSCE LLP++ DL IV+RC+DV  AKAC EA FPCRTPPN
Sbjct:   128 TQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMFPCRTPPN 187

Query:   183 WWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSD 242
             WWTEEL I+D++FFS ++++MK+RG K  ++ASA+ITYTE+SLRDLVRDHS G G K SD
Sbjct:   188 WWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHS-GRGVKYSD 246

Query:   243 AQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVS 302
                  S  R QQR+L++SIVSL+PS+K  FP+NFLC LLR A+FL  S +CKNELEKR+S
Sbjct:   247 PGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRIS 306

Query:   303 AILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSP 362
              +LEHVSVDDLL+ SFTYDGERL DL+SVR+IIS FVEKEK++ VF+G GDF     CS 
Sbjct:   307 VVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNG-GDFNRGV-CSV 364

Query:   363 AMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLD 422
             ++ RVAKTV +YL EIAT G+L+ISKFN IANLVPK +RK DDDLYRAIDI+LKAHPNLD
Sbjct:   365 SLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFLKAHPNLD 424

Query:   423 EIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGL--DNDRST-- 478
             EIEREK+CSSMDPLKLSY+AR+HASQNKRLPV IVLHALYYDQLKLRSG+    +R+   
Sbjct:   425 EIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYYDQLKLRSGVAEQEERAVVV 484

Query:   479 -PDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAXXXXXXXXXXXXXXX 537
              P+A  TR+QLQAD  L KENEALRSEL +MK+Y+SD+QK  N A               
Sbjct:   485 LPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKNKNGAGASSSNSSSLVSSKK 544

Query:   538 X--XFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS 584
                 FFSS+SK  GKLNPFK+GSKDTS+ID+D+  +D TKPRRRRFSIS
Sbjct:   545 SKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGVDITKPRRRRFSIS 593
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0009638 "phototropism" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q682S0RPT2_ARATHNo assigned EC number0.71640.99480.9797yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023923001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (572 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
pfam03000249 pfam03000, NPH3, NPH3 family 2e-92
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 5e-11
pfam00651101 pfam00651, BTB, BTB/POZ domain 9e-09
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  283 bits (727), Expect = 2e-92
 Identities = 113/263 (42%), Positives = 155/263 (58%), Gaps = 14/263 (5%)

Query: 181 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKS 240
            +WW E+LS + I+ F R+I AMK RG K   I  AL+ Y ++ L  L R       + S
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSR-------SGS 53

Query: 241 SDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKR 300
           S+  S       +QR LLE+IVSL+PSEK +   +FL  LLR+AI L AS SC+ ELE+R
Sbjct: 54  SEEDSEE-----EQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERR 108

Query: 301 VSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSC 360
           +   L+  ++DDLL+ S     E L+D++ V++I+  F+ ++      S   D   S   
Sbjct: 109 IGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDA-ATQSSDDEDSEAS-PS 166

Query: 361 SPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPN 420
           S ++ +VAK V  YL EIA    L +SKF  +A  VP  +R   D LYRAIDIYLKAHPN
Sbjct: 167 SSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPN 226

Query: 421 LDEIEREKICSSMDPLKLSYEAR 443
           L E E++++C  MD  KLS EA 
Sbjct: 227 LSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 584
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.97
PHA02713557 hypothetical protein; Provisional 99.96
PHA03098534 kelch-like protein; Provisional 99.94
PHA02790480 Kelch-like protein; Provisional 99.94
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.69
KOG4350620 consensus Uncharacterized conserved protein, conta 99.67
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.6
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.57
KOG4591280 consensus Uncharacterized conserved protein, conta 99.42
KOG4682488 consensus Uncharacterized conserved protein, conta 99.02
KOG07831267 consensus Uncharacterized conserved protein, conta 98.92
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.44
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.92
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.66
KOG2838401 consensus Uncharacterized conserved protein, conta 97.11
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.07
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.94
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.93
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 96.82
KOG3473112 consensus RNA polymerase II transcription elongati 96.17
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 95.75
KOG0511516 consensus Ankyrin repeat protein [General function 95.64
KOG0511516 consensus Ankyrin repeat protein [General function 95.0
KOG2838401 consensus Uncharacterized conserved protein, conta 94.83
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 92.35
KOG2714465 consensus SETA binding protein SB1 and related pro 91.36
KOG1665302 consensus AFH1-interacting protein FIP2, contains 89.44
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 86.2
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1.4e-83  Score=648.93  Aligned_cols=257  Identities=42%  Similarity=0.694  Sum_probs=225.9

Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHH
Q 007944          181 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLES  260 (584)
Q Consensus       181 ~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~lLE~  260 (584)
                      .|||+||++.|++++|+|||.+|+.+|++++.|+++|++||++|+|++.++. .+...    ..........++|.+||+
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~----~~~~~~~~~~~~r~llEt   75 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSS----SAESSTSSENEQRELLET   75 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-ccccc----cccccchhHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999974421 11000    012234567899999999


Q ss_pred             HHhhCCCCCCCCCHHHHHHHHHhhhhccCChhhHHHHHHHHHhhhhhccccchhccccCCCCC-ccccHHHHHHHHHHHH
Q 007944          261 IVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGE-RLFDLESVRKIISGFV  339 (584)
Q Consensus       261 Iv~LLP~~k~~vs~~fL~~lLr~a~~l~as~~Cr~~LE~rig~qLd~AtlddLLips~~~~~~-~~ydvd~v~ri~~~Fl  339 (584)
                      ||.|||.+|+++||+|||+|||+|++++++..||.+||+|||.|||||||||||||+ ++.++ |+||||+|+|||++||
T Consensus        76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGEDTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcccchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 44444 9999999999999999


Q ss_pred             hccccccccCCCCCccccCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCcccchhhHHHHHHHHHhCC
Q 007944          340 EKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHP  419 (584)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vakl~D~yLaEiA~D~~L~~~kF~~lae~lP~~aR~~~DglYrAiDiyLk~Hp  419 (584)
                      .+++........+....+.++.+++.+||||||+||||||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            98643111111111122456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccCCCCCHHHH
Q 007944          420 NLDEIEREKICSSMDPLKLSYEAR  443 (584)
Q Consensus       420 ~l~~~Er~~lC~~~dc~KLS~ea~  443 (584)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999998

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-11
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-11
2vpk_A116 Myoneurin; transcription regulation, transcription 4e-11
3b84_A119 Zinc finger and BTB domain-containing protein 48; 8e-11
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 3e-10
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-10
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 5e-10
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 6e-10
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-09
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-09
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 8e-09
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 9e-09
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-08
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 3e-08
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 9e-06
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 2e-05
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 4e-05
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 5e-05
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 8e-05
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 22  SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEK 81
            +++  D+ + V    F  H+ +L A S+Y    I+   + +L       +    + FE 
Sbjct: 25  KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVT--VKGFEP 82

Query: 82  AAKFCYGVNFEITVHNVAALRCAAEFLQMTD 112
             +F Y     ++  NV  +    EFL + +
Sbjct: 83  LIQFAYTAKLILSKENVDEVCKCVEFLSVHN 113
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.97
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.89
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.87
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.86
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.85
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.84
2vpk_A116 Myoneurin; transcription regulation, transcription 99.84
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.84
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.84
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.83
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.83
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.83
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.82
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.78
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.31
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.19
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.93
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.6
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.43
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.41
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.23
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.14
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.92
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.78
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.41
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.93
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.11
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.65
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.61
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 94.11
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.97  E-value=9.3e-32  Score=270.55  Aligned_cols=235  Identities=15%  Similarity=0.216  Sum_probs=178.0

Q ss_pred             hHHHhhhHHHhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCc--cCCcceEEeCCCCCCHHHHHHHHHHhh
Q 007944           11 SAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESK--EADLTRINLSNIPGGPEMFEKAAKFCY   87 (584)
Q Consensus        11 ~~~~r~~~w~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~--Es~~~~I~L~di~gg~~aFe~vl~F~Y   87 (584)
                      ..+.+....++.++.+|||+|.|||+.|+|||.||+++|+||++||. ++.  |+....|.|++++  +++|+.+++|+|
T Consensus        16 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Y   93 (256)
T 3hve_A           16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIF   93 (256)
T ss_dssp             HHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhcc
Confidence            34555566788999999999999999999999999999999999998 555  6777899999999  999999999999


Q ss_pred             cccccCChhhHHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhh
Q 007944           88 GVNFEITVHNVAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVA  165 (584)
Q Consensus        88 tg~i~it~~NV~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~i  165 (584)
                      ||++.++.+|+..++.+|++|+|++  +.|+.+|.... +.-||+.+..+++.    ++|..|...|.+| |.++|.++.
T Consensus        94 t~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l-~~~n~~~i~~~A~~----~~~~~L~~~~~~~-i~~~f~~v~  167 (256)
T 3hve_A           94 SGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI-AAENCIGIRDFALH----YCLHHVHYLATEY-LETHFRDVS  167 (256)
T ss_dssp             HSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC-CSSTTHHHHHHHHH----TTCHHHHHHHHHH-HHHHHHHHT
T ss_pred             CCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC-CHhhHHHHHHHHHH----cCcHHHHHHHHHH-HHHHHHHHh
Confidence            9999999999999999999999999  55555555544 44468888888886    8999999999999 999999876


Q ss_pred             hhhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccc
Q 007944          166 TAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQS  245 (584)
Q Consensus       166 a~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~  245 (584)
                      .                  .++|..|+.+.+..+|+.......+|+.|+++++.|+++..+.  |               
T Consensus       168 ~------------------~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~--R---------------  212 (256)
T 3hve_A          168 S------------------TEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI--R---------------  212 (256)
T ss_dssp             T------------------CHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC--S---------------
T ss_pred             C------------------CcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH--H---------------
Confidence            4                  4899999999999999988877778999999998887554332  2               


Q ss_pred             cchHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHhhhhccCC-hhhHHHHHH
Q 007944          246 TNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKAS-TSCKNELEK  299 (584)
Q Consensus       246 ~~~~~~~~~r~lLE~Iv~LLP~~k~~vs~~fL~~lLr~a~~l~as-~~Cr~~LE~  299 (584)
                           ..+...|++.|+-      +.+|+.||.+.++...++..+ +.|+..|++
T Consensus       213 -----~~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          213 -----KVHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             -----TTTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             -----HHHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                 1345678999863      458899999999999999999 789999875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 584
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-11
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-10
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 22  SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFE 80
           S++I TD+V+ V    F  HK +L+A S     +  +  K           I   PE F 
Sbjct: 21  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFN 78

Query: 81  KAAKFCYGVNFEITVHNVAALRCAAEFLQMTD--KYCENNL 119
               F Y     +   N+ A+   A +LQM      C   +
Sbjct: 79  ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.85
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.85
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.72
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.54
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.0
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.54
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.24
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 93.44
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.32
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=173.15  Aligned_cols=108  Identities=24%  Similarity=0.293  Sum_probs=97.3

Q ss_pred             HHhhhHHHhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccc
Q 007944           13 KERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNF   91 (584)
Q Consensus        13 ~~r~~~w~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i   91 (584)
                      +-+...-++.++.+|||+|.|+|++|++||+||+++|+||++||. ++.++....+.+++++  |++|+.+++|+|||++
T Consensus        12 ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~   89 (122)
T d1r29a_          12 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRL   89 (122)
T ss_dssp             HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCee
Confidence            334445578889999999999999999999999999999999998 6777777667778999  9999999999999999


Q ss_pred             cCChhhHHHHHHHHHHccCchhhhhHhHHHHHHHHHH
Q 007944           92 EITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLS  128 (584)
Q Consensus        92 ~it~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln  128 (584)
                      .++.+||.+++.+|++|+|+.      |+..|++|+.
T Consensus        90 ~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~L~  120 (122)
T d1r29a_          90 NLREGNIMAVMATAMYLQMEH------VVDTCRKFIK  120 (122)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHH
T ss_pred             cCchhhHHHHHHHHHHHCcHH------HHHHHHHHHH
Confidence            999999999999999999999      8888888875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure