Citrus Sinensis ID: 007945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
Protein Sequence
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Secondary Structure (PSIPRED)
cEEEEEEEccccccccccccccccccHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccEEEEccHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccccEEcccEEEEEEEEccEEEEEcccccEEEEEEEEEccccccHHHHHHHccccccEEEEEcccccccccccccccEEEccccccccccccccEEEcccccccccccccEEEEEEcccccccccHHHHHHHHHHHccccccccccccEEEEEEEEccccccccccccccccEEEEcccccccccccccccccHHccHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccHHcccccccccccEEccccccccHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEcccEEEEcccHHHHHHHHHHHHHHccccEEccccEEEEEEccccEEEEEccccEEEEEEEEEcccccHHHHHHHHcccccccEEEEEEEEcccccccccccEEEEccccccccccccEEEEEEccccccccccEEEEEEEcccccccccHHHHHHHHHHHcHHHccccHHHcEEEEEEEEEccccccccccccccEEEEEccccccccccEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mvflqlrhfngvshfpsqvhgkrkvsqrciclqpqaavpsrTRRIMESISvsgevggaggaySYDALKRLDQIWSNICSTQTVQQEIQQVVSsnaglfsqsdlsdkavgtfDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVEsgilveddideatatkfnpnrcgfegkgeIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIrsgrkpdgvclvvgscargfkdnstsdviyssssvkkvgdSEVQLFWEafpagsgpldrttymftyidpqagspkLEELLERYWDlmpeyqgvtldnLEIQRVIYgifptyrdsplpaAFNRILQfgdasgiqspvsfggfgsltrhlgrlstgvyeavrgdfvdsyslsllnpympnlsASWLFQRAMSakqqsdvspdFINELLYVNFQCMqklgdpvlrpflqdvikfgplaktlglvmlnkpqiipsifkqvgipvlvdwSGHFFMLGYYTLLSTFADPVIRSLLnafpprmkYEWNRYLEAWKygsgldykl
Flexible Loop (DISEMBL)
MVFlqlrhfngvshfpsqvhgkrkvsqRCICLqpqaavpsrtrrIMESisvsgevggagGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVErntlkgreqewnisrkELLELVESGILVeddideatatkfnpnrcgfegKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGScargfkdnstsdviyssssvKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAwkygsgldykl
Low Complexity Region (SEG)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMesisvsgevggaggaysyDALKRLDQIWSNICstqtvqqeiqqvvssNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYssssvkkvGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered region (IsUnstruct)
**FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVP**TRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMS******VSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGL****
Disordered Region (DISOPRED)
*VF*****FN****F*************CICLQPQAAVPSRTRRIMESIS**********AYSYDALKRLDQIWS*******************************AVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG******ISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK*
Disordered Region (DISEMBL)
MVFLQLRHFNGVSHFP**********QRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQR********DVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered Region (DISPRO)
MVFLQLRHFNGVSHFPS*****RKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSS*************AVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
225447101	583	PREDICTED: uncharacterized protein LOC10	0.994	0.996	0.808	0.0
255568683	583	conserved hypothetical protein [Ricinus	0.993	0.994	0.781	0.0
356554456	584	PREDICTED: uncharacterized protein LOC10	0.998	0.998	0.772	0.0
449453527	591	PREDICTED: uncharacterized protein LOC10	0.933	0.922	0.790	0.0
164564753	522	CM0545.530.nc [Lotus japonicus]	0.883	0.988	0.780	0.0
42569568	585	Lycopene beta/epsilon cyclase protein [A	0.998	0.996	0.713	0.0
357141364	593	PREDICTED: uncharacterized protein LOC10	0.974	0.959	0.697	0.0
308044513	593	uncharacterized protein LOC100502482 [Ze	0.928	0.913	0.711	0.0
326507200	611	predicted protein [Hordeum vulgare subsp	0.928	0.887	0.705	0.0
115476458	614	Os08g0422000 [Oryza sativa Japonica Grou	0.929	0.884	0.706	0.0

>gi|225447101|ref|XP_002273536.1| PREDICTED: uncharacterized protein LOC100241486 [Vitis vinifera] gi|297739195|emb|CBI28846.3| unnamed protein product [Vitis vinifera]

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/584 (80%), Positives = 526/584 (90%), Gaps = 3/584 (0%)

Query: 1   MVFLQLRHFN-GVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           MV LQL+  N G+S  PS    +R+ + R +CLQ QA +PSRT+RIMESISVSGEVGGAG
Sbjct: 1   MVVLQLQQPNYGISQGPSLQR-RRQRALRTVCLQTQA-LPSRTQRIMESISVSGEVGGAG 58

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY ALKRLDQ+WS+ICS QTV QE ++VVSS  GLF  S + DKAV TFDV+VCGGT
Sbjct: 59  GAYSYSALKRLDQLWSSICSAQTVYQEPRKVVSSVPGLFKHSAVDDKAVETFDVLVCGGT 118

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATALS KGLRV +VERN LKGREQEWNISRKELLELVE+GILVEDDI + TA KF
Sbjct: 119 LGIFIATALSSKGLRVGVVERNILKGREQEWNISRKELLELVEAGILVEDDIKQVTAAKF 178

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFEGKGEIWVEDILNLGVSP KLIE+VK+RF SLGGVIFEGYSVS+IC YE+AAV
Sbjct: 179 NPNRCGFEGKGEIWVEDILNLGVSPVKLIEVVKRRFTSLGGVIFEGYSVSNICIYEDAAV 238

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
           L LAEG ILS+ L+IDAMGNFSPVVKQ+R GRKPDGVCLVVGSCARGF +NSTSDVIYSS
Sbjct: 239 LQLAEGNILSTRLLIDAMGNFSPVVKQMRGGRKPDGVCLVVGSCARGFTNNSTSDVIYSS 298

Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
           SSVKKVG+SEVQ FWEAFPAGSGP+DRTTYMFTY+DPQ   PKLE+LLE YWD+MPEYQG
Sbjct: 299 SSVKKVGESEVQYFWEAFPAGSGPVDRTTYMFTYVDPQPKCPKLEDLLEDYWDMMPEYQG 358

Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
           V+L++L+I RV++GIFPTYRDSPLPAAF+RILQFGDASGIQSPVSFGGFGSLTRHL RLS
Sbjct: 359 VSLEDLQILRVVFGIFPTYRDSPLPAAFDRILQFGDASGIQSPVSFGGFGSLTRHLERLS 418

Query: 420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQC 479
           TG+YEA+ G+F+DSY+LSLLNPYMPNLSA+WLFQRAMSAKQQ DVSPDFI+ELLYVNFQ 
Sbjct: 419 TGIYEAITGNFLDSYNLSLLNPYMPNLSAAWLFQRAMSAKQQYDVSPDFISELLYVNFQS 478

Query: 480 MQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 539
           MQ+LGDPVLRPFLQDVI+FGPL KTLGLVML+KPQI+PSIFKQVG+PVL+DWSGHF MLG
Sbjct: 479 MQRLGDPVLRPFLQDVIQFGPLVKTLGLVMLSKPQILPSIFKQVGVPVLLDWSGHFVMLG 538

Query: 540 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 583
           YYT LSTF DP IR L+NAFP +MKY+W RYLEAWKYG+GLDYK
Sbjct: 539 YYTFLSTFIDPAIRPLINAFPAKMKYKWKRYLEAWKYGAGLDYK 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568683|ref|XP_002525313.1| conserved hypothetical protein [Ricinus communis] gi|223535372|gb|EEF37046.1| conserved hypothetical protein [Ricinus communis]

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/587 (78%), Positives = 514/587 (87%), Gaps = 7/587 (1%)

Query: 1   MVFLQLRHFNGVSHFPSQ---VHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGG 57
           M  +QL   NG+  +P     +  +++ +QR + LQ QA VPSRT+RIMESISVS EVGG
Sbjct: 1   MEVVQLGQCNGLFSYPKLSPLLQRRKERTQRSMSLQAQA-VPSRTQRIMESISVSNEVGG 59

Query: 58  AGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG 117
           AGGAYSYDALKRLDQIWS+ICS Q   QE QQVVSS   + S+ DL+D+    FDV+VCG
Sbjct: 60  AGGAYSYDALKRLDQIWSSICS-QAATQEPQQVVSSIPYVPSRLDLTDE--DRFDVVVCG 116

Query: 118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
           GTLGIFIA AL  KGLRV IVERN LKGREQEWNISRKELLELVE GIL E+DI++A A 
Sbjct: 117 GTLGIFIAAALIAKGLRVGIVERNILKGREQEWNISRKELLELVEVGILSENDIEKAIAA 176

Query: 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
           KFNPNRCGFE KGE+WVEDILNLGVSPAKLIEI KK FISLGGVI EGYSVSSIC YE+A
Sbjct: 177 KFNPNRCGFEDKGEVWVEDILNLGVSPAKLIEITKKHFISLGGVILEGYSVSSICVYEDA 236

Query: 238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
           AVL LAEGK LS+ LIIDAMGNFSPVV+QIR GRKPDGVCLVVGSCARGF+DNSTSDVIY
Sbjct: 237 AVLQLAEGKTLSTRLIIDAMGNFSPVVRQIRGGRKPDGVCLVVGSCARGFEDNSTSDVIY 296

Query: 298 SSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
           SSSS+K +G+SEVQLFWEAFPAGSGP+DRTTYMFTY+ PQ GSPKLE+LLE YWDLMP+Y
Sbjct: 297 SSSSMKNIGESEVQLFWEAFPAGSGPMDRTTYMFTYVSPQPGSPKLEDLLENYWDLMPKY 356

Query: 358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
           QGV+L+NLEI RVIYGIFPTY DSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct: 357 QGVSLENLEIMRVIYGIFPTYCDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 416

Query: 418 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNF 477
           LS G+YEA+ GDF+D++SLSLLNPYMPNLSASWLFQRAMSAKQ+S++ P+F+N+LL+VNF
Sbjct: 417 LSAGIYEAISGDFLDAHSLSLLNPYMPNLSASWLFQRAMSAKQKSNIYPEFVNDLLHVNF 476

Query: 478 QCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 537
           Q MQ+LGDPVLRPFLQDVI+  PLAKTLG+VML KPQIIP+IFKQVGIPVL+DWSGHF M
Sbjct: 477 QSMQRLGDPVLRPFLQDVIQLEPLAKTLGIVMLTKPQIIPAIFKQVGIPVLLDWSGHFLM 536

Query: 538 LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 584
           L YYT LS+FADPVIR L+N  P ++KYEW R+LEAWKYGSGLDYKL
Sbjct: 537 LSYYTFLSSFADPVIRPLINVLPLKLKYEWKRHLEAWKYGSGLDYKL 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554456|ref|XP_003545562.1| PREDICTED: uncharacterized protein LOC100784275 [Glycine max]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/585 (77%), Positives = 509/585 (87%), Gaps = 2/585 (0%)

Query: 1   MVFLQLRHFNGVSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           M+ L+L+  NG+S          +K S+R +  +PQA VPSRT+RIMES+SVSGEVGGAG
Sbjct: 1   MLLLRLQPINGISQLSVGTSFPHKKCSRRPLLSRPQA-VPSRTQRIMESVSVSGEVGGAG 59

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY+ALKRLDQ WS+ICS+Q V QE QQVVS+   LF  SDL+DKA G++DV+VCGGT
Sbjct: 60  GAYSYEALKRLDQQWSSICSSQEVVQEPQQVVSTIPSLFGSSDLADKAEGSYDVLVCGGT 119

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATAL  +GLRVAIVERN LKGR+QEWNIS KELLELVE G+L EDDI+ ATA KF
Sbjct: 120 LGIFIATALCARGLRVAIVERNVLKGRDQEWNISTKELLELVEVGVLEEDDIERATAVKF 179

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFE KG+IWV DILNLGVSPAKLIEIVK RFISLGGVIFEG  VS I  YE+AAV
Sbjct: 180 NPNRCGFERKGDIWVNDILNLGVSPAKLIEIVKTRFISLGGVIFEGCGVSCINVYEDAAV 239

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
           L L+  KILSS LIIDAMGNFSPVVKQIR GRKPDGVCLVVG+CARGF+ NSTSDVI+SS
Sbjct: 240 LKLSGDKILSSRLIIDAMGNFSPVVKQIRGGRKPDGVCLVVGTCARGFETNSTSDVIFSS 299

Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
           SS+KKVGDS+ QLFWEAFPAGSGPLDRTTY+FTY++PQ  SPKLEELLE YWDLMPEYQG
Sbjct: 300 SSIKKVGDSKAQLFWEAFPAGSGPLDRTTYLFTYVEPQPASPKLEELLEAYWDLMPEYQG 359

Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
           V+LDNLEI RVIYGIFPTYR SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRLS
Sbjct: 360 VSLDNLEILRVIYGIFPTYRQSPLPAAFSRVLQFGDASGIQSPVSFGGFGSLTRHLGRLS 419

Query: 420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQC 479
            G++EA+ GD++DSYSLSLLNPYMPNLSASWLFQRAMSAK+QS+V  DFINELLY NF C
Sbjct: 420 AGIHEAINGDYLDSYSLSLLNPYMPNLSASWLFQRAMSAKKQSNVPADFINELLYTNFSC 479

Query: 480 MQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 539
           MQ+LGDPVLRPFLQDV++FGPL+KTLGLVML  P+I+PSIFKQVGIPVL+DWS HF  LG
Sbjct: 480 MQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTNPKILPSIFKQVGIPVLLDWSRHFLGLG 539

Query: 540 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 584
           YYT LSTFADP++R  LN  P +  ++W R+LEAWKYG+GLDYKL
Sbjct: 540 YYTFLSTFADPIVRPFLNTLPSKTSFQWKRHLEAWKYGAGLDYKL 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453527|ref|XP_004144508.1| PREDICTED: uncharacterized protein LOC101203820 [Cucumis sativus] gi|449493152|ref|XP_004159207.1| PREDICTED: uncharacterized LOC101203820 [Cucumis sativus]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/545 (79%), Positives = 492/545 (90%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+RIME ISV+GEVGGAGGAYSY+ALKRLDQIWS ICS Q + +  Q+VV   +G FS
Sbjct: 47  SRTQRIMEGISVTGEVGGAGGAYSYNALKRLDQIWSRICSDQEIPEAAQEVVRRVSGAFS 106

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
           +SDL +KA+ TFDV+VCGGTLG+FIATALS KGLR+ IVERN LKGREQEWNISRKELLE
Sbjct: 107 RSDLEEKAIDTFDVLVCGGTLGVFIATALSLKGLRIGIVERNVLKGREQEWNISRKELLE 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           LVE G++ ED+I++ATA KFNPNRC FEGKGEIWVE+ILNLGVSP KLIE+VKKRFISLG
Sbjct: 167 LVEVGVITEDEIEQATAMKFNPNRCAFEGKGEIWVENILNLGVSPEKLIELVKKRFISLG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
           GVIFEG +VSSIC Y++  V+ L++G ILSS L IDAMGNFSPVVKQIR GRKPDGVCLV
Sbjct: 227 GVIFEGCNVSSICIYDDTTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLV 286

Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
           VGSCARGF+DNSTSDVIYSSSS++KVG SEVQLFWEAFPAGSGP+DRTTYMFTYIDPQ G
Sbjct: 287 VGSCARGFRDNSTSDVIYSSSSLRKVGSSEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPG 346

Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
           SPKLEELLE YWDLMP+YQGV+LD+L+I R+IYG+FPTYR+SPLPAAF+R+LQFGDASGI
Sbjct: 347 SPKLEELLEEYWDLMPKYQGVSLDDLKILRIIYGVFPTYRNSPLPAAFDRVLQFGDASGI 406

Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 459
           QSPVSFGGFGSLTRHLGRLSTG+YEAV  +F+DS SLSLLNPYMPNLS+SWLFQRAMSAK
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSTGIYEAVTENFLDSNSLSLLNPYMPNLSSSWLFQRAMSAK 466

Query: 460 QQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 519
           Q+S++SP FINELL+VNFQ MQ+LGDPVLRPFLQDV++F PL +TLGLVML KPQ++PSI
Sbjct: 467 QRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQDVVQFVPLTQTLGLVMLTKPQLLPSI 526

Query: 520 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 579
           FKQVGIPVL+DW GHF MLGYYT LSTF DP++RS L++  P+  +EW R LEAWKYG+G
Sbjct: 527 FKQVGIPVLLDWFGHFGMLGYYTFLSTFVDPIVRSFLSSLTPKETFEWKRRLEAWKYGAG 586

Query: 580 LDYKL 584
           LDYKL
Sbjct: 587 LDYKL 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164564753|dbj|BAF98233.1| CM0545.530.nc [Lotus japonicus]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/528 (78%), Positives = 466/528 (88%), Gaps = 12/528 (2%)

Query: 1   MVFLQLRHFNGVSH------FPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGE 54
           M+ LQL+ FNGVSH      FP     ++K S+R + L+PQA VPSRT+RIMES+SVSGE
Sbjct: 1   MLLLQLQPFNGVSHLTVGTPFP-----QKKCSRRTLLLRPQA-VPSRTQRIMESVSVSGE 54

Query: 55  VGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVI 114
           VGGAGGAYSY+ALKRLDQ+WS++CS Q V QE QQVVSS   LF  SDL++KA G++DV+
Sbjct: 55  VGGAGGAYSYEALKRLDQLWSSLCSAQEVVQEPQQVVSSIPSLFRSSDLANKAEGSYDVV 114

Query: 115 VCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA 174
           VCGGTLGIFIATAL  +GL+VAIVERN LKGREQ+WNISRKELLELVE G+L EDDI+ A
Sbjct: 115 VCGGTLGIFIATALCARGLKVAIVERNVLKGREQDWNISRKELLELVEVGVLEEDDIERA 174

Query: 175 TATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY 234
           T+  FNPNRCGFE KG+IWV +IL+LGVSP KLIEIVK+RFISLGGVIFEG SVS I  Y
Sbjct: 175 TSINFNPNRCGFESKGDIWVNNILHLGVSPVKLIEIVKERFISLGGVIFEGCSVSCINIY 234

Query: 235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSD 294
           E+AAVL L+  KILSS LIIDAMGNFSP+VKQIR GRKPDGVCLVVG+CARGF+ NSTSD
Sbjct: 235 EDAAVLKLSGDKILSSRLIIDAMGNFSPIVKQIRRGRKPDGVCLVVGTCARGFESNSTSD 294

Query: 295 VIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM 354
           VI+SSSSVKKVGDS+ Q FWEAFPA SGPLDRTTYMFTY++ Q GSPKLEELLE YWDLM
Sbjct: 295 VIFSSSSVKKVGDSQAQYFWEAFPAASGPLDRTTYMFTYVEAQPGSPKLEELLEAYWDLM 354

Query: 355 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414
           PEYQGV+LDNLEI RVIYGIFPTYR+SPLPAAF R+LQFGDASGIQSPVSFGGFGSLTRH
Sbjct: 355 PEYQGVSLDNLEILRVIYGIFPTYRESPLPAAFCRVLQFGDASGIQSPVSFGGFGSLTRH 414

Query: 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLY 474
           LGR+S G+YEA+ GD++DSY+LSLLNPYMPNLSASWLFQRAMSAK+QS+V PDFINELL+
Sbjct: 415 LGRISAGIYEAINGDYLDSYNLSLLNPYMPNLSASWLFQRAMSAKKQSNVPPDFINELLF 474

Query: 475 VNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 522
            NF CMQ+LGDPVLRPFLQDV++FGPL+KTLGLVML KPQI+PSIFKQ
Sbjct: 475 ANFSCMQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTKPQILPSIFKQ 522

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569568|ref|NP_180823.3| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana] gi|110742020|dbj|BAE98947.1| hypothetical protein [Arabidopsis thaliana] gi|330253614|gb|AEC08708.1| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/586 (71%), Positives = 486/586 (82%), Gaps = 3/586 (0%)

Query: 1   MVFLQLRHFNGV--SHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGA 58
           MV LQ+  FNG   S   +Q +  R+ +   +C+Q Q A PS T++IMESISV GE GGA
Sbjct: 1   MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59

Query: 59  GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGG 118
           GGAYSY+ALKRLD IWSNIC+  T  QE QQ+VS  +G      + +  VGTFD++VCGG
Sbjct: 60  GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSGFSQDYSMGNNLVGTFDIVVCGG 119

Query: 119 TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATK 178
           TLGIF+ATAL  KGLRVA+VERN +KGR+QEWNISRKE+ EL E  +L ED+I+E  A K
Sbjct: 120 TLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAAK 179

Query: 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA 238
           FNPNRCGFE  G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E  S+SSI  Y + A
Sbjct: 180 FNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDLA 239

Query: 239 VLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYS 298
           V+ L++G  LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIYS
Sbjct: 240 VMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIYS 299

Query: 299 SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQ 358
           SSSV +V DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+YQ
Sbjct: 300 SSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKYQ 359

Query: 359 GVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418
           GV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRL
Sbjct: 360 GVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRL 419

Query: 419 STGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQ 478
           S G+Y+A+ GD +DS SLS LNPYMPNLSASWLFQRAMSAKQQ DVS  F NELL+VNF 
Sbjct: 420 SNGIYDAIDGDLLDSDSLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNFS 479

Query: 479 CMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFML 538
           CMQ+LGDPVLRPFLQD+I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HFFML
Sbjct: 480 CMQRLGDPVLRPFLQDIIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHFFML 539

Query: 539 GYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 584
           G YTLLS + DP++R  L   P + ++EW R LEAWKYG+GLDY+L
Sbjct: 540 GLYTLLSAYIDPLLRPSLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141364|ref|XP_003572198.1| PREDICTED: uncharacterized protein LOC100825935 [Brachypodium distachyon]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/581 (69%), Positives = 477/581 (82%), Gaps = 12/581 (2%)

Query: 13  SHFPSQVHGKRKVSQRCICL----------QPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           +  P   HG R V+ R  C           +  A  PSRT+ IM+ IS   EVGGAGGAY
Sbjct: 12  AQLPWARHGGRLVAPRAGCGRRIVRVRASGEAGARPPSRTQMIMDKISGGDEVGGAGGAY 71

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
           SY ALKRLDQI S+IC +Q V  ++ ++V+   G     DL   +   FDV+VCGGTLGI
Sbjct: 72  SYGALKRLDQICSSICQSQ-VDPKVPEIVTQVQGPSVDYDLGGGS-EIFDVLVCGGTLGI 129

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182
           F+ATALSFKGLRV I+ERN +KGREQEWNISRKEL+E+VE GIL E ++++  ++ FNPN
Sbjct: 130 FVATALSFKGLRVGIIERNIIKGREQEWNISRKELMEIVEVGILSEGEVEQIISSDFNPN 189

Query: 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL 242
           RCGFE KGEIWVE ILNLG+SPAKL+EI+K+RFIS GG IFEG S+SSI  +++ AVL L
Sbjct: 190 RCGFENKGEIWVEGILNLGISPAKLVEIMKERFISSGGAIFEGKSLSSISVHDDLAVLKL 249

Query: 243 AEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSV 302
           ++G  L   L++DAMGNFSP+V+QIRSGRKPDG+CLVVG+CARGF+ N+TSDVI+SSSSV
Sbjct: 250 SDGDCLPCRLVVDAMGNFSPIVRQIRSGRKPDGLCLVVGACARGFERNTTSDVIFSSSSV 309

Query: 303 KKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTL 362
           KK G+S VQLFWEAFPAGSGP DRTTYMFTY+DPQ G PKLEELLE YWDLMPEYQ VTL
Sbjct: 310 KKAGNSGVQLFWEAFPAGSGPADRTTYMFTYVDPQFGFPKLEELLEIYWDLMPEYQDVTL 369

Query: 363 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422
           + L+I+RVI+GIFPT+RDSPLPAAF+RILQ GDASGIQSPVSFGGFGSLTRHLGRLS G+
Sbjct: 370 ETLDIRRVIFGIFPTHRDSPLPAAFDRILQVGDASGIQSPVSFGGFGSLTRHLGRLSNGI 429

Query: 423 YEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQK 482
           YEAV GDF+D+YSL LLNPYMPNLSASWLFQRAMS + Q++VSP FINELLY NFQ MQK
Sbjct: 430 YEAVSGDFLDAYSLRLLNPYMPNLSASWLFQRAMSTRPQTNVSPTFINELLYANFQSMQK 489

Query: 483 LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYT 542
           LGD VLRPFLQDVI+FGPL KTLGLVML++PQI+PSIFKQVG+ V+++WSGHF MLGYYT
Sbjct: 490 LGDSVLRPFLQDVIQFGPLVKTLGLVMLSRPQILPSIFKQVGLGVILNWSGHFVMLGYYT 549

Query: 543 LLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 583
            LS F DPV+R  + + PPR KY+W RYLEAWKYG+GLDY+
Sbjct: 550 FLSNFIDPVVRPWVESLPPRNKYQWKRYLEAWKYGAGLDYR 590

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308044513|ref|NP_001183889.1| uncharacterized protein LOC100502482 [Zea mays] gi|238015286|gb|ACR38678.1| unknown [Zea mays] gi|413922261|gb|AFW62193.1| hypothetical protein ZEAMMB73_528743 [Zea mays]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/544 (71%), Positives = 460/544 (84%), Gaps = 2/544 (0%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+ IM+ IS    VGGAGGAYSY ALKRLDQIWS+IC  Q    ++ +VV+   GL +
Sbjct: 49  SRTQMIMDKISAGEGVGGAGGAYSYSALKRLDQIWSSICEAQA-DSKVPEVVTRVEGLLA 107

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
            SDL   +   FDVIVCGGTLGIF+ATALS KGLR+ I+ERN +KGREQEWNISRKEL+E
Sbjct: 108 DSDLGSGS-EIFDVIVCGGTLGIFVATALSSKGLRIGIIERNIIKGREQEWNISRKELME 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           +VE GIL E ++++  ++ FNPNRCGFE KGEIWVE+ILNLGVSPAKL+E +K+RFIS G
Sbjct: 167 IVEIGILSEAELEQIISSDFNPNRCGFEDKGEIWVENILNLGVSPAKLVENMKERFISSG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
           G IFE  S+SSI  Y++ AVL L++G  LS  L++DAMGNFSP+V+QIRSGRKPDG+CLV
Sbjct: 227 GAIFEEKSLSSIYVYDDLAVLKLSDGDSLSCRLVVDAMGNFSPIVRQIRSGRKPDGMCLV 286

Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
           VG+CA GF+ N+TSD+I+SSSSVK+ G+S VQLFWEAFPAGSGP DRTTYMFTY+DP  G
Sbjct: 287 VGACAHGFEKNTTSDIIFSSSSVKRAGNSGVQLFWEAFPAGSGPNDRTTYMFTYVDPTFG 346

Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
            PKLEELLE +WDLMP YQ V L NL+I+RVI+GIFPTYRDSPLPAAF+RILQ GDASGI
Sbjct: 347 GPKLEELLEVFWDLMPAYQDVLLQNLDIRRVIFGIFPTYRDSPLPAAFDRILQVGDASGI 406

Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 459
           QSPVSFGGFGSLTRHLGRLS+G+ EAV GDF+D++SL LLNPYMPNLSASWLFQRAMS +
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSSGICEAVEGDFLDAHSLQLLNPYMPNLSASWLFQRAMSVR 466

Query: 460 QQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 519
              +VSP FINELL+ NFQ MQKLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PSI
Sbjct: 467 PHVNVSPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPSI 526

Query: 520 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 579
           FKQVG+ V+++WSGHF MLGYYT LST+ DP++RS + + PPR KY+W RYLEAW+YG+G
Sbjct: 527 FKQVGLGVILEWSGHFMMLGYYTFLSTYIDPILRSWVESLPPRDKYQWKRYLEAWRYGAG 586

Query: 580 LDYK 583
           LDY+
Sbjct: 587 LDYR 590

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507200|dbj|BAJ95677.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/551 (70%), Positives = 458/551 (83%), Gaps = 9/551 (1%)

Query: 39  PSRTRRIMESISVSG-EVGGAGGAYSYDALKRLDQIWSNICST---QTVQQEIQQVVSSN 94
           PSRT+ IM+ IS +G EVGGAGGAYSYDALKRLDQI S+ICS     +  +   Q+V+  
Sbjct: 59  PSRTQTIMDKISSAGDEVGGAGGAYSYDALKRLDQICSSICSAPQEASSSKAPPQIVTRV 118

Query: 95  AGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
            G    +  +D    TFDV+VCGGTLGIFIATALS++GLRV IVERN +KGREQEWNISR
Sbjct: 119 QGPARAA--ADLGAETFDVLVCGGTLGIFIATALSYRGLRVGIVERNAVKGREQEWNISR 176

Query: 155 KELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
           KEL+E+V+ GIL E + ++   + FNPNRCGFEGKGEIWVEDIL+LG+SPAKL+EI+K R
Sbjct: 177 KELMEIVQVGILSEAEAEQVVTSDFNPNRCGFEGKGEIWVEDILHLGISPAKLVEIMKAR 236

Query: 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD 274
           FIS GG IFEG SVSSI  +++ AVL L++G  L   L++DAMGNFSP+V+QIRSGR+PD
Sbjct: 237 FISSGGEIFEGKSVSSISVHDDLAVLKLSDGDRLRCRLVVDAMGNFSPIVRQIRSGRRPD 296

Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSE---VQLFWEAFPAGSGPLDRTTYMF 331
           G+CLVVG+CARGF+ N+TSDVI+SSSSVK VG      VQLFWEAFPAGSGP DRTTYMF
Sbjct: 297 GLCLVVGACARGFEKNTTSDVIFSSSSVKSVGGDSGRGVQLFWEAFPAGSGPTDRTTYMF 356

Query: 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL 391
           TY+DPQ GSPKLEELLE +WDLMP YQ   L+NL+I+RVIYGIFPTYRDSPLPAAF+RIL
Sbjct: 357 TYVDPQFGSPKLEELLEMFWDLMPGYQDTVLENLDIRRVIYGIFPTYRDSPLPAAFDRIL 416

Query: 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWL 451
           Q GDASGIQSPVSFGGFGSLTRHLGRLS GVYEAV GDF+D+ SL LLNPYMPNLSASWL
Sbjct: 417 QVGDASGIQSPVSFGGFGSLTRHLGRLSNGVYEAVSGDFLDAQSLKLLNPYMPNLSASWL 476

Query: 452 FQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLN 511
           FQRAMS +  SD+SP FINELL+ NFQ MQKLGD VLRPFLQDVI+FGPL KTLGLVM++
Sbjct: 477 FQRAMSTRPGSDISPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMIS 536

Query: 512 KPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYL 571
           +PQI+P IFKQVG+ V+++WSGHF MLGYYT LS+F  P +   + +  PR +Y+W+RYL
Sbjct: 537 RPQILPEIFKQVGVGVILNWSGHFVMLGYYTFLSSFVGPAVTPWVKSLAPRDRYQWDRYL 596

Query: 572 EAWKYGSGLDY 582
           EAW+YG+GLDY
Sbjct: 597 EAWEYGAGLDY 607

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476458|ref|NP_001061825.1| Os08g0422000 [Oryza sativa Japonica Group] gi|37573089|dbj|BAC98659.1| Glycine/D-amino acid oxidases-like [Oryza sativa Japonica Group] gi|113623794|dbj|BAF23739.1| Os08g0422000 [Oryza sativa Japonica Group] gi|215695103|dbj|BAG90294.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640571|gb|EEE68703.1| hypothetical protein OsJ_27354 [Oryza sativa Japonica Group]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/545 (70%), Positives = 459/545 (84%), Gaps = 2/545 (0%)

Query: 39  PSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLF 98
           PSRT+ IM+ IS   EVGGAGGAYSY+ALKRLDQIWS+IC  Q+   ++ +VV+   G  
Sbjct: 69  PSRTQMIMDKISSGEEVGGAGGAYSYNALKRLDQIWSSICEAQS-DSKVPEVVTRVQGPL 127

Query: 99  SQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL 158
              DL D +   FDV+VCGGTLGIF+ATALS+KGLRV I+ERN +KGREQEWNISRKEL+
Sbjct: 128 VDYDLGDGSE-IFDVLVCGGTLGIFVATALSYKGLRVGIIERNIIKGREQEWNISRKELM 186

Query: 159 ELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL 218
           ELVE GIL E++I++  ++ FNP RC FE KGEIWVE+ILNLG+SPAKL+EI+K+RF+S 
Sbjct: 187 ELVEVGILSEEEIEQIISSDFNPTRCAFESKGEIWVENILNLGISPAKLVEIMKERFVSS 246

Query: 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCL 278
           GG IFEG S+SSI  +++ AVL L++G  L   L+IDAMGNFSP+V+QIRSGRKPDGVCL
Sbjct: 247 GGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPIVRQIRSGRKPDGVCL 306

Query: 279 VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA 338
           VVG+CARGF  N+TSD+I+SSSS+K+ G+S VQLFWE FPAGSGP DRTTYMFTY+DP +
Sbjct: 307 VVGTCARGFDRNTTSDIIFSSSSIKRAGNSGVQLFWEGFPAGSGPTDRTTYMFTYVDPHS 366

Query: 339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398
           G PKLEELLE +WDLMP Y+ V L+NL+I RVI+GIFPTYR+SPLPAAF+R+LQ GDASG
Sbjct: 367 GGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPLPAAFDRVLQVGDASG 426

Query: 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 458
           IQSPVSFGGFGSLTRHLGRLS G+YEAV GD +D+ SL LLNPYMPNLSASWLFQRAMSA
Sbjct: 427 IQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYMPNLSASWLFQRAMSA 486

Query: 459 KQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPS 518
           + Q DVSP FINELL+ NF+ MQKLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PS
Sbjct: 487 RPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPS 546

Query: 519 IFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGS 578
           IFKQ G  V+++WSGHF MLGYYT LSTF DP++R  + + P R KY+W RYLEAWKYG+
Sbjct: 547 IFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRNKYQWKRYLEAWKYGA 606

Query: 579 GLDYK 583
           GLDY+
Sbjct: 607 GLDYR 611

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
TAIR|locus:2046422	585	AT2G32640 [Arabidopsis thalian	0.996	0.994	0.669	6.3e-211

TAIR|locus:2046422 AT2G32640 [Arabidopsis thaliana (taxid:3702)]

 Score = 2039 (722.8 bits), Expect = 6.3e-211, P = 6.3e-211
 Identities = 393/587 (66%), Positives = 458/587 (78%)

Query:     1 MVFLQLRHFNG-VSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMXXXXXXXXXXXX 58
             MV LQ+  FNG VS    +Q +  R+ +   +C+Q Q A PS T++IM            
Sbjct:     1 MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59

Query:    59 XXXXXXDALKRLDQIWSNICXXXXXXXXXXXXXXXNAGLFSQS-DLSDKAVGTFDVIVCG 117
                   +ALKRLD IWSNIC                +G FSQ   + +  VGTFD++VCG
Sbjct:    60 GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSG-FSQDYSMGNNLVGTFDIVVCG 118

Query:   118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
             GTLGIF+ATAL  KGLRVA+VERN +KGR+QEWNISRKE+ EL E  +L ED+I+E  A 
Sbjct:   119 GTLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAA 178

Query:   178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
             KFNPNRCGFE  G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E  S+SSI  Y + 
Sbjct:   179 KFNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDL 238

Query:   238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
             AV+ L++G  LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIY
Sbjct:   239 AVMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIY 298

Query:   298 XXXXXXXXGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
                      DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+Y
Sbjct:   299 SSSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKY 358

Query:   358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
             QGV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct:   359 QGVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGR 418

Query:   418 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNF 477
             LS G+Y+A+ GD +DS SLS LNPYMPNLSASWLFQRAMSAKQQ DVS  F NELL+VNF
Sbjct:   419 LSNGIYDAIDGDLLDSDSLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNF 478

Query:   478 QCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 537
              CMQ+LGDPVLRPFLQD+I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HFFM
Sbjct:   479 SCMQRLGDPVLRPFLQDIIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHFFM 538

Query:   538 LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 584
             LG YTLLS + DP++R  L   P + ++EW R LEAWKYG+GLDY+L
Sbjct:   539 LGLYTLLSAYIDPLLRPSLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      584       543   0.00095  119 3  11 22  0.36    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  321 KB (2162 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.76u 0.15s 40.91t   Elapsed:  00:00:02
  Total cpu time:  40.76u 0.15s 40.91t   Elapsed:  00:00:02
  Start:  Sat May 11 08:09:29 2013   End:  Sat May 11 08:09:31 2013

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025926001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (583 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025310001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (504 aa)				•		•	•		0.927
	GSVIVG00016526001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (529 aa)				•		•	•		0.919
	GSVIVG00031131001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (583 aa)				•		•			0.903
	GSVIVG00027139001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (569 aa)				•		•			0.900
	GSVIVG00037718001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (306 aa)						•			0.899
	bch1	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (299 aa)						•			0.899
	GSVIVG00038227001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa)			•				•		0.525
	GSVIVG00006111001	SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (332 aa)			•	•					0.523
	GSVIVG00022014001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa)			•	•					0.519
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	584
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 67/304 (22%), Positives = 120/304 (39%), Gaps = 31/304 (10%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN--ISRKELLELVESGILV 167
           +DV+V G G  G   A  L+ KGLRV ++E+ +   R +     +S + L EL   G L+
Sbjct: 1   YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGALSPRALEELDLPGELI 59

Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
            + +    A  F+PN        EI +E  L   +      E + +R    G  +  G  
Sbjct: 60  VNLVR--GARFFSPN----GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTR 113

Query: 228 VSSICTYENAAVLLLAEGKI-LSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG 286
           V  +  +++  V+++   +  +++ ++I A G+ S V K++   ++P       G  AR 
Sbjct: 114 VLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPR----EYGVAARA 169

Query: 287 FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY---MFTYIDPQAGSPKL 343
             +    +V      V          +   FP G       T    + +    +   PK 
Sbjct: 170 EVEMPDEEVDEDFVEVYIDRGIVPGGYGWVFPKG-----DGTANVGVGSRSAEEGEDPK- 223

Query: 344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403
            + L+ +    PE     L + E   V   + P             +L  GDA+G  +P+
Sbjct: 224 -KYLKDFLARRPE-----LKDAETVEVCGALIPI-GRPDEKLVRGNVLLVGDAAGHVNPL 276

Query: 404 SFGG 407
           +  G
Sbjct: 277 TGEG 280

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 80/422 (18%), Positives = 144/422 (34%), Gaps = 47/422 (11%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGIL-- 166
            +DV++ G G  G   A  L+  GL V ++E+ +  G       ++      +    L  
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG-------AKPCCGGGLSPRALEE 55

Query: 167 VEDDIDEATATKFNPNRCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEG 225
           +  D DE    K    R  F G K  I V       V  AK  + + +R    G  ++ G
Sbjct: 56  LIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPG 115

Query: 226 YSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPVVKQI-RSGRKPDGVCLVVGSC 283
             V+ +   ++  V+ +  G   + + ++IDA G  S + +++    RKP+   + V   
Sbjct: 116 TRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEV 175

Query: 284 ARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL-DRTTYMFTYIDPQAGSPK 342
                D    + +Y    V   G       W  FP G G        +            
Sbjct: 176 IEVPDDGDVEEFLYGPLDVGPGGYG-----W-IFPLGDGHANVGIGVLLDDPSL----SP 225

Query: 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402
             ELLER+ +         L   +I     G  P    +  P   + +L  GDA+G  +P
Sbjct: 226 FLELLERFKE--HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNP 283

Query: 403 VSFGG--FGSLT-RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 459
           ++  G  +   + +                     +L+    Y   L  S   +   S +
Sbjct: 284 LTGEGIRYAIKSGKLAAEA------IAEALEGGEEALAE---YERLLRKSLAREDLKSLR 334

Query: 460 QQ---SDVSPDFINEL--LYVNFQCMQKLGD----PVLRPFLQDVIKFGPLAKTLGLVML 510
                  +    +  L  L  +   +  +       +L P L+ V+    L K++   + 
Sbjct: 335 LLKLLLRLLDRTLPALIKLLADKDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLT 394

Query: 511 NK 512
             
Sbjct: 395 AL 396

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	584
PLN02463	447	lycopene beta cyclase	100.0
PLN02697	529	lycopene epsilon cyclase	100.0
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	100.0
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.98
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.97
PRK10015	429	oxidoreductase; Provisional	99.97
PRK08013	400	oxidoreductase; Provisional	99.97
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.97
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.97
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.97
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.96
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.96
PRK10157	428	putative oxidoreductase FixC; Provisional	99.96
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.96
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.96
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.96
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.96
PRK06185	407	hypothetical protein; Provisional	99.96
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.96
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.96
PRK08244	493	hypothetical protein; Provisional	99.96
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.96
PRK07190	487	hypothetical protein; Provisional	99.96
PRK06834	488	hypothetical protein; Provisional	99.96
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.96
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.95
PRK08294	634	phenol 2-monooxygenase; Provisional	99.95
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.95
PRK06996	398	hypothetical protein; Provisional	99.95
PRK09126	392	hypothetical protein; Provisional	99.95
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.95
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.95
PRK06184	502	hypothetical protein; Provisional	99.95
PRK07045	388	putative monooxygenase; Reviewed	99.95
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.95
PRK11445	351	putative oxidoreductase; Provisional	99.95
PTZ00367	567	squalene epoxidase; Provisional	99.94
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.93
PLN02985	514	squalene monooxygenase	99.93
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.93
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.93
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.93
PRK07588	391	hypothetical protein; Provisional	99.93
PRK06753	373	hypothetical protein; Provisional	99.93
PRK07538	413	hypothetical protein; Provisional	99.93
PRK06475	400	salicylate hydroxylase; Provisional	99.92
PRK05868	372	hypothetical protein; Validated	99.92
PRK06126	545	hypothetical protein; Provisional	99.92
PRK08163	396	salicylate hydroxylase; Provisional	99.92
PRK06847	375	hypothetical protein; Provisional	99.92
PRK07236	386	hypothetical protein; Provisional	99.9
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.88
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.87
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.86
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.83
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.82
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.78
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.72
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.4
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.38
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.36
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.31
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.28
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.27
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.27
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.23
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.21
COG2081	408	Predicted flavoproteins [General function predicti	99.13
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.04
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.04
COG0579	429	Predicted dehydrogenase [General function predicti	99.03
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.01
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.99
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.95
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.95
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.91
PRK05257	494	malate:quinone oxidoreductase; Validated	98.9
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.88
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.88
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.87
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.86
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.83
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.82
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.78
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.75
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.75
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.72
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.72
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.71
PLN02661	357	Putative thiazole synthesis	98.7
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.66
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.66
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.66
PRK07804	541	L-aspartate oxidase; Provisional	98.64
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.61
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.6
PRK08274	466	tricarballylate dehydrogenase; Validated	98.58
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.58
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.57
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.56
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.54
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.53
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.53
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.53
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.52
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.5
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.49
PRK06175	433	L-aspartate oxidase; Provisional	98.49
PRK07121	492	hypothetical protein; Validated	98.47
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.47
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.46
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.46
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.43
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.42
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.42
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.41
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.39
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.38
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.34
PRK08401	466	L-aspartate oxidase; Provisional	98.34
PRK07233	434	hypothetical protein; Provisional	98.33
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.31
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.3
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.28
PRK08275	554	putative oxidoreductase; Provisional	98.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.26
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.25
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.25
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.25
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.24
PRK08071	510	L-aspartate oxidase; Provisional	98.22
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.22
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.22
PTZ00058	561	glutathione reductase; Provisional	98.22
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.21
PLN02815	594	L-aspartate oxidase	98.21
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.19
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.18
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.17
PRK10262	321	thioredoxin reductase; Provisional	98.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.16
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.16
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.14
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.12
PRK06370	463	mercuric reductase; Validated	98.11
PRK06116	450	glutathione reductase; Validated	98.1
PLN02507	499	glutathione reductase	98.09
PRK12839	572	hypothetical protein; Provisional	98.09
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.09
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.08
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.07
PRK07395	553	L-aspartate oxidase; Provisional	98.05
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.04
PRK09077	536	L-aspartate oxidase; Provisional	98.03
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.03
PRK14694	468	putative mercuric reductase; Provisional	98.02
PRK09897	534	hypothetical protein; Provisional	98.02
KOG2853	509	consensus Possible oxidoreductase [General functio	98.01
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.01
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.01
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.0
PRK07512	513	L-aspartate oxidase; Provisional	97.99
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.99
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.98
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.95
PLN02612	567	phytoene desaturase	97.94
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.94
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.92
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.92
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.91
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.9
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.9
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.9
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.89
PRK13748	561	putative mercuric reductase; Provisional	97.87
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.85
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.83
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.82
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.82
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.81
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.81
PLN02546	558	glutathione reductase	97.8
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.8
PRK07846	451	mycothione reductase; Reviewed	97.79
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.79
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.78
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.75
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.74
TIGR02053	463	MerA mercuric reductase. This model represents the	97.72
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.72
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.7
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.69
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.63
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.63
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.62
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.61
PTZ00052	499	thioredoxin reductase; Provisional	97.57
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.57
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.56
PRK14727	479	putative mercuric reductase; Provisional	97.53
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.51
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.49
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.49
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.46
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.45
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.45
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.43
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.34
PRK12831	464	putative oxidoreductase; Provisional	97.33
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.26
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.25
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.25
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.23
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.21
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.2
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.18
PLN02507	499	glutathione reductase	97.17
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.15
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.15
PRK06116	450	glutathione reductase; Validated	97.14
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.12
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.11
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.08
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.05
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.05
PRK06370	463	mercuric reductase; Validated	97.01
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.98
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.97
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	96.96
TIGR02053	463	MerA mercuric reductase. This model represents the	96.93
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.93
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.9
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.89
PTZ00052	499	thioredoxin reductase; Provisional	96.88
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.88
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.88
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.87
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.85
PRK07846	451	mycothione reductase; Reviewed	96.84
PRK02106	560	choline dehydrogenase; Validated	96.83
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.82
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.81
PLN02576	496	protoporphyrinogen oxidase	96.79
PRK14727	479	putative mercuric reductase; Provisional	96.76
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.76
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.74
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.73
PRK07208	479	hypothetical protein; Provisional	96.72
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.71
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.71
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.67
PRK14694	468	putative mercuric reductase; Provisional	96.64
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.64
PRK13748	561	putative mercuric reductase; Provisional	96.63
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.6
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.56
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.56
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.51
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.5
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.45
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.42
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.39
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.27
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.27
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.27
PTZ00058	561	glutathione reductase; Provisional	96.26
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.25
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.24
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.19
PLN02268	435	probable polyamine oxidase	96.19
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.17
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.14
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.13
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.11
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.09
COG3573	552	Predicted oxidoreductase [General function predict	96.09
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.97
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.96
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.95
PLN02676	487	polyamine oxidase	95.95
PLN02785	587	Protein HOTHEAD	95.93
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.9
COG3349	485	Uncharacterized conserved protein [Function unknow	95.9
PLN02546	558	glutathione reductase	95.87
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.85
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.79
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	95.77
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.69
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.67
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.66
KOG2852	380	consensus Possible oxidoreductase [General functio	95.66
PLN02568	539	polyamine oxidase	95.64
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.53
PLN02852	491	ferredoxin-NADP+ reductase	95.51
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.48
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.47
PRK10262	321	thioredoxin reductase; Provisional	95.43
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.4
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.39
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.38
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.3
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.27
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.21
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	95.17
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.09
PLN02529	738	lysine-specific histone demethylase 1	95.09
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.06
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.97
PLN02328	808	lysine-specific histone demethylase 1 homolog	94.7
PRK13984	604	putative oxidoreductase; Provisional	94.69
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.68
PLN02487	569	zeta-carotene desaturase	94.53
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	94.49
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.46
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.42
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.39
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.31
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	94.19
PRK13977	576	myosin-cross-reactive antigen; Provisional	94.13
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	93.89
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	93.86
PLN02976	1713	amine oxidase	93.84
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	93.83
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.64
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.62
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.59
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.56
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.53
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	93.27
PTZ00188	506	adrenodoxin reductase; Provisional	93.13
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	92.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.88
PLN03000	881	amine oxidase	92.29
PRK12770	352	putative glutamate synthase subunit beta; Provisio	92.26
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	92.21
PRK12831	464	putative oxidoreductase; Provisional	92.15
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	92.11
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.69
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	91.69
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	91.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.46
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	91.33
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	90.85
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	90.8
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	90.77
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	90.05
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	89.81
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	89.36
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.93
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.9
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	88.81
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.8
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	88.4
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.24
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.68
PRK13230	279	nitrogenase reductase-like protein; Reviewed	87.32
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.77
PLN02976	1713	amine oxidase	86.69
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.66
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	86.55
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.43
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.18
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	86.1
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.09
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	85.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	85.69
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	85.53
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.51
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	85.4
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	85.22
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	85.21
PRK13232	273	nifH nitrogenase reductase; Reviewed	84.93
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	84.76
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	84.52
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	84.45
PLN02676	487	polyamine oxidase	84.11
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	84.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	83.73
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	83.59
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.51
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.41
PRK15116	268	sulfur acceptor protein CsdL; Provisional	83.27
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	83.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	83.14
PRK13235	274	nifH nitrogenase reductase; Reviewed	82.84
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	82.76
PRK04148	134	hypothetical protein; Provisional	82.74
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	82.73
PRK06719	157	precorrin-2 dehydrogenase; Validated	82.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.65
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	82.63
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	82.5
cd02032	267	Bchl_like This family of proteins contains bchL an	82.45
cd02040	270	NifH NifH gene encodes component II (iron protein)	82.44
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.29
TIGR01287	275	nifH nitrogenase iron protein. This model describe	82.26
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.26
cd02117	212	NifH_like This family contains the NifH (iron prot	81.79
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	81.6
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	81.52
PRK08328	231	hypothetical protein; Provisional	81.41
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	81.4
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.29
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.26
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	81.22
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	80.89
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	80.78
PRK08223	287	hypothetical protein; Validated	80.72
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	80.7
PLN02487	569	zeta-carotene desaturase	80.58
PRK12548	289	shikimate 5-dehydrogenase; Provisional	80.57
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	80.56
PRK13236	296	nitrogenase reductase; Reviewed	80.43
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.37
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.35
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	80.34
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	80.1

>PLN02463 lycopene beta cyclase

Probab=100.00  E-value=1.7e-39  Score=353.31  Aligned_cols=397  Identities=16%  Similarity=0.139  Sum_probs=270.1

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ...|||+|||| ++|+++|+.|+++|++|+|||+++....++.|.+|..   .+.++|+.      +++.+.|....+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~---~l~~lgl~------~~l~~~w~~~~v~~   96 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD---EFEALGLL------DCLDTTWPGAVVYI   96 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH---HHHHCCcH------HHHHhhCCCcEEEE
Confidence            34699999995 5799999999999999999999876554555666654   45555643      33444555444444


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      ...........+ ..|++..|++.|.+++.+.|+++. .++|++++.+++++.|++++|++++|++||+|||++|++.+.
T Consensus        97 ~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~  174 (447)
T PLN02463         97 DDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQY  174 (447)
T ss_pred             eCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCC
Confidence            332211111222 248999999999999998899886 579999998888899999899899999999999999987742


Q ss_pred             hcCCCCCCceeeEEEEeee----ccCCCcceeEEccCCcccc--------cCCCCceEEEEEccCCCCCCcc-EEEEEEc
Q 007945          267 IRSGRKPDGVCLVVGSCAR----GFKDNSTSDVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDR-TTYMFTY  333 (584)
Q Consensus       267 l~~~~~~~~~~~~vg~~a~----g~~~~~~~di~~~~~~~~~--------~~~~~~~~~W~~fP~~~g~~~~-~~~L~~~  333 (584)
                       ..... .......|...+    .++ .+ ..++.++.....        .......|.| ++|.+++.... .+.++..
T Consensus       175 -~~~~~-~g~Q~a~Gi~~ev~~~p~d-~~-~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~~~~vEeT~l~s~  249 (447)
T PLN02463        175 -DKPFN-PGYQVAYGILAEVDSHPFD-LD-KMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSNRIFLEETSLVAR  249 (447)
T ss_pred             -CCCCC-ccceeeeeEEeecCCCCcc-cc-cchhhhcChhhccccchhhhccCCCCceEE-EEecCCCeEEEEeeeeecC
Confidence             11111 111111222221    111 00 011111111000        0000135778 79988652000 0111111


Q ss_pred             cCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHH
Q 007945          334 IDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR  413 (584)
Q Consensus       334 ~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr  413 (584)
                      .  ......+++.+.++++.+    +  +...++.+.++|.||+..  +.+...+|+++|||||+++||.||+||..+++
T Consensus       250 ~--~~~~~~lk~~L~~~l~~~----G--i~~~~i~~~E~~~IPmg~--~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~  319 (447)
T PLN02463        250 P--GLPMDDIQERMVARLRHL----G--IKVKSVEEDEKCVIPMGG--PLPVIPQRVLGIGGTAGMVHPSTGYMVARTLA  319 (447)
T ss_pred             C--CCCHHHHHHHHHHHHHHC----C--CCcceeeeeeeeEeeCCC--CCCCCCCCEEEecchhcCcCCCccccHHHHHH
Confidence            0  001124555555555433    2  223345677889999963  44456789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCC--------ChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCC
Q 007945          414 HLGRLSTGVYEAVRGDFV--------DSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGD  485 (584)
Q Consensus       414 ~~~~La~~i~~AL~~~~l--------s~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~  485 (584)
                      .+..+|+.|+++++++..        +...++.|++|++.. +...++.+|..-...+      -+.++.||.+||+||+
T Consensus       320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~-~~~~~~fg~~~l~~~~------~~~~~~ff~~ff~l~~  392 (447)
T PLN02463        320 AAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRR-QREFFCFGMDILLKLD------LDGTRRFFDAFFDLEP  392 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhH-hHHHHHhHHHHHHcCC------hHHHHHHHHHHHcCCH
Confidence            999999999999997655        234455677777653 3333444444433211      1278999999999999


Q ss_pred             cccccccccccchhHHHHHHHHHHHhCCCChHHHHhhcCcchhhhhhHHHHH
Q 007945          486 PVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM  537 (584)
Q Consensus       486 ~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~~g~~~~~~~~~~~~~  537 (584)
                      ++|++||++++++.+|+.+|+++|.++|+-+++.+...|+++++.++.+|+.
T Consensus       393 ~~~~gfl~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~  444 (447)
T PLN02463        393 HYWHGFLSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQ  444 (447)
T ss_pred             HHccccccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999875

>PLN02697 lycopene epsilon cyclase

Probab=100.00  E-value=3.1e-36  Score=332.69  Aligned_cols=395  Identities=15%  Similarity=0.165  Sum_probs=262.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .|||||||| ++|+++|+.|++.|++|+|||+....  ...|++|..+   +.++|+      ++++.+.|+...+.+.+
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~--~~n~GvW~~~---l~~lgl------~~~i~~~w~~~~v~~~~  176 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDE---FKDLGL------EDCIEHVWRDTIVYLDD  176 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC--CCccccchhH---HHhcCc------HHHHHhhcCCcEEEecC
Confidence            699999995 57999999999999999999986432  2346777644   445553      33455566655555543


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQ  266 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rq  266 (584)
                      +..+.....+ ..|++..|++.|.+++.+.|+++ .+++|+++..+++++. +.+.+|.+++|++||+|||++|. ... 
T Consensus       177 ~~~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~-  253 (529)
T PLN02697        177 DKPIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQ-  253 (529)
T ss_pred             CceeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhc-
Confidence            3332222111 14899999999999999999987 6789999988777765 45567889999999999999994 322 


Q ss_pred             hcCCCCCCceeeEEEEeee--ccC-CCcceeEEccCCcc--c---ccCCCCceEEEEEccCCCCCCccEEEE-EEccCCC
Q 007945          267 IRSGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV--K---KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTYIDPQ  337 (584)
Q Consensus       267 l~~~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~--~---~~~~~~~~~~W~~fP~~~g~~~~~~~L-~~~~~~~  337 (584)
                      .....+........|...+  ..+ +.+. .++.++...  +   ........|+| ++|.+++    ..++ .++....
T Consensus       254 ~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~l~~~  327 (529)
T PLN02697        254 YEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETCLASK  327 (529)
T ss_pred             cccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEeeeccC
Confidence            1111111111112222221  111 2222 233332210  0   00112356888 7999865    2333 2221101


Q ss_pred             C--CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHH
Q 007945          338 A--GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHL  415 (584)
Q Consensus       338 ~--~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~  415 (584)
                      +  ....+++.+.+|++..    +  +...++.+.++|.+|+..  +.+...+++++|||||+++||.||+||..+++.+
T Consensus       328 ~~l~~~~l~~~L~~~l~~~----G--i~~~~i~~~E~g~iPm~g--~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A  399 (529)
T PLN02697        328 DAMPFDLLKKRLMSRLETM----G--IRILKTYEEEWSYIPVGG--SLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEA  399 (529)
T ss_pred             CCCCHHHHHHHHHHHHHhC----C--CCcceEEEEEeeeecCCC--CCcccCCCeeEeehhhcCCCCchhhhHHHHHHhH
Confidence            1  1124555666666543    2  234456778899999953  4433479999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC---C-C--hhhhHhhhchhhhhhHHH-----HHHHHhhccccCCCChHHHHHHHHHHHHHHHhcC
Q 007945          416 GRLSTGVYEAVRGDF---V-D--SYSLSLLNPYMPNLSASW-----LFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLG  484 (584)
Q Consensus       416 ~~La~~i~~AL~~~~---l-s--~~~l~~L~~Ye~~~~~~~-----~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp  484 (584)
                      ..+|+.|+++++.++   . +  ...-..++.|+..|....     .+.+.|..-  .+++++.+    +.||..||+||
T Consensus       400 ~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l--~~l~~~~~----~~ff~~ff~L~  473 (529)
T PLN02697        400 PKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI--LQLDTEGI----RTFFVTFFRLP  473 (529)
T ss_pred             HHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH--HCCCHHHH----HHHHHHHHCCC
Confidence            999999999998775   0 0  011223667777666543     233344333  33566655    55556666999


Q ss_pred             CcccccccccccchhHHHHHHHHHHHhCCCChHHHHhh--cCcchhhhhhHHHHHH
Q 007945          485 DPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFFML  538 (584)
Q Consensus       485 ~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~--~g~~~~~~~~~~~~~~  538 (584)
                      +++|++||++++++.+++.+|+++|.++|+-+++.|..  .+.+....++++|+.+
T Consensus       474 ~~~~~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  529 (529)
T PLN02697        474 KWMWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLTL  529 (529)
T ss_pred             HHHHhhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhhcC
Confidence            99999999999999999999999999999999988875  5767778999999753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=100.00  E-value=1.2e-31  Score=287.42  Aligned_cols=372  Identities=17%  Similarity=0.157  Sum_probs=236.3

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      ||||||| ++|+++|+.|++.|++|+|||+++..+.+..|.++...++.   +++      +.++...|+...+......
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~   71 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSD---LGL------ADCVEHVWPDVYEYRFPKQ   71 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhh---hch------hhHHhhcCCCceEEecCCc
Confidence            8999995 57999999999999999999999866656678888765433   231      2333344433221111111


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEcCCcEEEccEEEEecCCChHHHhHhcC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRS  269 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~  269 (584)
                      ....+.. ...+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++.+|++++|++||+|||.+|.+++... 
T Consensus        72 ~~~~~~~-~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~-  148 (388)
T TIGR01790        72 PRKLGTA-YGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRF-  148 (388)
T ss_pred             chhcCCc-eeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccC-
Confidence            1111111 1248999999999999998988886 5678888776 5677888888889999999999999996643211 


Q ss_pred             CCCCCceeeEEEEeee--ccC-CCcceeEEccCCcccc-cC---CCCceEEEEEccCCCCCCccEEEEEE-ccCCCC--C
Q 007945          270 GRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFT-YIDPQA--G  339 (584)
Q Consensus       270 ~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~~~-~~---~~~~~~~W~~fP~~~g~~~~~~~L~~-~~~~~~--~  339 (584)
                      +... ......|...+  ..+ +.+ ..++++...... .+   +.+..|+| .||.+++.    .++-. ......  .
T Consensus       149 ~~~~-~~q~~~G~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~~----~~v~~~~~~~~~~~~  221 (388)
T TIGR01790       149 PLNV-GFQVAYGVEARLSRPPHGPS-SMVIMDARVDQLAAPELKGYRPTFLY-AMPLGSTR----VFIEETSLADRPALP  221 (388)
T ss_pred             CCCc-eEEEEEEEEEEEcCCCCCCC-ceEEEeccccccccccccCCCCceEE-EeecCCCe----EEEEeccccCCCCCC
Confidence            1111 11111222221  111 111 123333221110 00   00123888 79997642    22211 101001  1


Q ss_pred             CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945          340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  419 (584)
Q Consensus       340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La  419 (584)
                      ...+++.+.+|++.+.    .  ...++.+.+.+.+|+....  +...+|+++||||||++||+||+|++.+++++..+|
T Consensus       222 ~~~~~~~l~~~~~~~g----~--~~~~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la  293 (388)
T TIGR01790       222 RDRLRQRILARLNAQG----W--QIKTIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLA  293 (388)
T ss_pred             HHHHHHHHHHHHHHcC----C--eeeEEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHH
Confidence            1245556666665431    1  1223345567889996432  336799999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCChhhhHhhhchhhhhhHHHHH---HHHhhccccCCCChHHHHHHHHHHHHHHHhcCCccccccccccc
Q 007945          420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLF---QRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVI  496 (584)
Q Consensus       420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l---~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~  496 (584)
                      +.|.++++.+  +...   ++.|++.++..+.-   -+.|......+++|+.++++    |..|+++|.+.+..||.++.
T Consensus       294 ~~l~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----f~~~~~~~~~~~~~fl~~~~  364 (388)
T TIGR01790       294 AAIAQALCQS--SELA---TAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRF----FQRFFGLPEELWERFLAARL  364 (388)
T ss_pred             HHHHHHhccC--HHHH---HHHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHCCCHHHHhhhhcCCC
Confidence            9999999765  2222   45565554443321   22333222355567765555    55555899999999999999


Q ss_pred             chhHHHHHHHHHHHhCCCChHHH
Q 007945          497 KFGPLAKTLGLVMLNKPQIIPSI  519 (584)
Q Consensus       497 ~~~~l~~~~~~~~~~~P~~~~~~  519 (584)
                      ++.+.+++|+++|.+.|+.+++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~  387 (388)
T TIGR01790       365 SLPDLLRVLLRMFGQPPNPVRSA  387 (388)
T ss_pred             CHHHHHHHHHHHhCcCChhhhhc
Confidence            99999999999999999988764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=100.00  E-value=8.6e-31  Score=282.20  Aligned_cols=317  Identities=23%  Similarity=0.284  Sum_probs=216.0

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+|||+|||| |+|+++|..||++|++|+|+||+..++.+.+  ..++...++.+.....      .. +........+.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~------~~-i~~~v~~~~~~   74 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD------EE-IERKVTGARIY   74 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcc------hh-hheeeeeeEEE
Confidence            3799999995 6899999999999999999999999987644  3577766666532211      01 22233333333


Q ss_pred             ecCCCc--ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCChH
Q 007945          186 FEGKGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       186 f~~~~~--l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S~  262 (584)
                      +.+ ..  +..+...++.|++..|+++|++++.++|++++.+++++++..+++++++.+.. +.+++||+||+|||.+|.
T Consensus        75 ~~~-~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          75 FPG-EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             ecC-CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence            332 22  22222346789999999999999999999999999999999999887766544 478999999999999999


Q ss_pred             HHhHhcCCCC-CCceeeEEEEeeeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCC
Q 007945          263 VVKQIRSGRK-PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGS  340 (584)
Q Consensus       263 v~rql~~~~~-~~~~~~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~  340 (584)
                      +++.++.... +......+. .....+ +....++++......     ..+|.| .||.+++.  ...++..........
T Consensus       154 l~~~lg~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~  224 (396)
T COG0644         154 LARKLGLKDRKPEDYAIGVK-EVIEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLS  224 (396)
T ss_pred             HHHHhCCCCCChhheeEEeE-EEEecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCC
Confidence            9999876521 222111111 111222 222333333322222     368999 79999763  344444333321122


Q ss_pred             ccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHH
Q 007945          341 PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST  420 (584)
Q Consensus       341 ~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~  420 (584)
                      +.. +++++|....+. .....+ .+......+.+|.+.....+...+|+++|||||++++|++|+|+..++..+..+|+
T Consensus       225 ~~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~  301 (396)
T COG0644         225 PFL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAE  301 (396)
T ss_pred             chH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHH
Confidence            344 888888765432 221111 33455566788987533223678999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCChhhhHhhhchhhhhhHHHH
Q 007945          421 GVYEAVRGDFVDSYSLSLLNPYMPNLSASWL  451 (584)
Q Consensus       421 ~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~  451 (584)
                      .|.++++.+   .+.   |..|++.+...+.
T Consensus       302 ~i~~~~~~~---~~~---l~~Y~~~~~~~~~  326 (396)
T COG0644         302 AIAEALEGG---EEA---LAEYERLLRKSLA  326 (396)
T ss_pred             HHHHHHHcC---hhH---HHHHHHHHHHHHH
Confidence            999999876   333   6668888877753

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=4.4e-30  Score=280.45  Aligned_cols=307  Identities=18%  Similarity=0.170  Sum_probs=190.0

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .+|||+|||| |+|+++|..||++|++|+|+||++....+....|+..   .+.++|+...     .+...+....+...
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~-----~~~~~i~~~~~~~p  109 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD-----IIDRKVTKMKMISP  109 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH-----HHHHHhhhheEecC
Confidence            3699999996 5799999999999999999999864322222346543   3445566532     12222211111111


Q ss_pred             CCCcccc-----cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--cEEEc
Q 007945          188 GKGEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSS  250 (584)
Q Consensus       188 ~~~~l~~-----~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~gv~V~~~~-------G--~~i~A  250 (584)
                      ++..+..     +...-..+++..|++.|.++|.++|++++.+ .++++...   ++.+.|++.+       |  .+++|
T Consensus       110 ~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a  188 (450)
T PLN00093        110 SNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV  188 (450)
T ss_pred             CceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe
Confidence            1111111     1111124899999999999999999999765 57777643   2455666532       3  47999


Q ss_pred             cEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeec----cC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945          251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD  325 (584)
Q Consensus       251 rlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g----~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~  325 (584)
                      |+||+|||.+|.++++++.+.  ...+..+......    .+ +....++++... +.|     ..|.| +||.++.   
T Consensus       189 ~~VIgADG~~S~vrr~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~---  256 (450)
T PLN00093        189 DAVIGADGANSRVAKDIDAGD--YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH---  256 (450)
T ss_pred             CEEEEcCCcchHHHHHhCCCC--cceeEEEEEEEeCChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc---
Confidence            999999999999999987643  2222221111110    11 123445655433 233     57899 7999853   


Q ss_pred             cEEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945          326 RTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (584)
Q Consensus       326 ~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG  405 (584)
                      ..+++.....    ..++.++.+.+...++.    .+...++.+...+.+|..  ...++..+|++|||||||+++|++|
T Consensus       257 ~~VG~g~~~~----~~~~~~~~~~l~~~~~~----~l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~tG  326 (450)
T PLN00093        257 VAVGTGTVVN----KPAIKKYQRATRNRAKD----KIAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKCSG  326 (450)
T ss_pred             EEEEEEEccC----CCChHHHHHHHHHHhhh----hcCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCcccc
Confidence            3444433221    12344444433322211    011222334444567763  2335678999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhCC--CCChhhhHhhhchhhhhhHH
Q 007945          406 GGFGSLTRHLGRLSTGVYEAVRGD--FVDSYSLSLLNPYMPNLSAS  449 (584)
Q Consensus       406 gG~g~~lr~~~~La~~i~~AL~~~--~ls~~~l~~L~~Ye~~~~~~  449 (584)
                      +|++.+++++..+|+.|.++++.+  +.+...   |+.|++.|+..
T Consensus       327 eGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~---L~~Y~~~~~~~  369 (450)
T PLN00093        327 EGIYFAAKSGRMCAEAIVEGSENGTRMVDEAD---LREYLRKWDKK  369 (450)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHH---HHHHHHHHHHH
Confidence            999999999999999999999765  223344   67788776654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.98  E-value=1.5e-29  Score=271.75  Aligned_cols=303  Identities=18%  Similarity=0.150  Sum_probs=193.2

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      |||||||| |+|+++|..||++|++|+|+||+........+.|+...   +.++|+..     ..+...+....+....+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~---l~~l~i~~-----~~~~~~~~~~~~~~~~~   72 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCL---IEEFDIPD-----SLIDRRVTQMRMISPSR   72 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhh---hhhcCCch-----HHHhhhcceeEEEcCCC
Confidence            79999995 67999999999999999999998321112346677643   44456542     22223332222221111


Q ss_pred             Ccc--cccccccc--eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC------C--cEEEccEEEEec
Q 007945          190 GEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDAM  257 (584)
Q Consensus       190 ~~l--~~~~~l~~--~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~------G--~~i~ArlVIdAD  257 (584)
                      ..+  ..+...++  .+++..|++.|.+++.++|++++.+ +|+++..+++++.|++.+      |  .+++|++||+||
T Consensus        73 ~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad  151 (388)
T TIGR02023        73 VPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD  151 (388)
T ss_pred             ceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence            111  11111122  4899999999999999999999765 699998888888877653      2  479999999999


Q ss_pred             CCChHHHhHhcCCCCCCceeeEEEEeeec----cC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945          258 GNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (584)
Q Consensus       258 G~~S~v~rql~~~~~~~~~~~~vg~~a~g----~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~  332 (584)
                      |.+|.++++++...+. .....+......    .. +.+..++++.. +..|     ..|.| .||.++.   ....+..
T Consensus       152 G~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~y~w-v~P~~~~---~~vg~~~  220 (388)
T TIGR02023       152 GANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGG-EVSP-----DFYGW-VFPKGDH---IAVGTGT  220 (388)
T ss_pred             CCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECC-CcCC-----CceEE-EeeCCCe---eEEeEEE
Confidence            9999999998765322 121111111110    00 12233444432 2332     47999 7999753   2333332


Q ss_pred             ccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945          333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (584)
Q Consensus       333 ~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~l  412 (584)
                      ..    ...+.+++++.+.+.++ +     ...+..+...+.+|+.  ...++..+|+++||||||+++|++|+|++.++
T Consensus       221 ~~----~~~~~~~~~~~l~~~~~-~-----~~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~  288 (388)
T TIGR02023       221 GT----HGFDAKQLQANLRRRAG-L-----DGGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAM  288 (388)
T ss_pred             CC----CCCCHHHHHHHHHHhhC-C-----CCceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHHHH
Confidence            21    11244555555544432 1     1112223334567763  22345679999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH
Q 007945          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW  450 (584)
Q Consensus       413 r~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~  450 (584)
                      +++..+++.|.++++.++  ..   .|+.|+..|+..+
T Consensus       289 ~sg~~aa~~i~~~l~~~~--~~---~L~~Y~~~~~~~~  321 (388)
T TIGR02023       289 KSGQMAAQAIAEYLQNGD--AT---DLRHYERKFMKLY  321 (388)
T ss_pred             HHHHHHHHHHHHHHhcCC--HH---HHHHHHHHHHHHH
Confidence            999999999999997652  33   3778888887664

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.97  E-value=9.8e-30  Score=274.16  Aligned_cols=330  Identities=16%  Similarity=0.147  Sum_probs=195.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      +||||||| |+|+++|..||++|++|+||||++..+.+....|+..   .|.++|+...     .+...++...+...++
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~---~l~~~g~~~~-----~~~~~i~~~~~~~p~~   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLC---MVDEFALPRD-----IIDRRVTKMKMISPSN   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---hHhhccCchh-----HHHhhhceeEEecCCc
Confidence            69999995 6799999999999999999999865432222346543   3455666432     2222222111111111


Q ss_pred             Ccccc-----cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE---eCCeEEEEE--cC-----C--cEEEccE
Q 007945          190 GEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLL--AE-----G--KILSSHL  252 (584)
Q Consensus       190 ~~l~~-----~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~---~~~gv~V~~--~~-----G--~~i~Arl  252 (584)
                      ..+..     +......+++..|++.|.+++.++|++++.++ +.++..   .++.+.|++  .+     |  .+++||+
T Consensus        73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~  151 (398)
T TIGR02028        73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA  151 (398)
T ss_pred             eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence            01110     11111258999999999999999999998875 767643   234455553  22     3  3799999


Q ss_pred             EEEecCCChHHHhHhcCCCCCCceeeEEEEeeeccC------CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCcc
Q 007945          253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (584)
Q Consensus       253 VIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~~------~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~  326 (584)
                      ||+|||.+|.++++++....  ..+..+....+ ++      +.+..+++++.. ..|     .+|.| +||+++.   .
T Consensus       152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~p-----~gY~W-ifP~~~~---~  218 (398)
T TIGR02028       152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGDD-VSP-----DFYGW-VFPKCDH---V  218 (398)
T ss_pred             EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCCC-CCC-----CceEE-EEECCCe---E
Confidence            99999999999999875421  22222211211 11      123345555432 333     57999 7999853   3


Q ss_pred             EEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       327 ~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      .+++....    ..+.+.++.+.+....+.    .+...++.+...+.+|..  ...++..+|+++||||||++||+||+
T Consensus       219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~ip~~--~~~~~~~~~~llvGDAAg~v~P~tGe  288 (398)
T TIGR02028       219 AVGTGTVA----AKPEIKRLQSGIRARAAG----KVAGGRIIRVEAHPIPEH--PRPRRVVGRVALVGDAAGYVTKCSGE  288 (398)
T ss_pred             EEEEEeCC----CCccHHHHHHhhhhhhhh----ccCCCcEEEEEEEecccc--ccccEECCCEEEEEcCCCCCCccccc
Confidence            34443221    112333333322111110    011122233344567763  23356789999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCC--CChhhhHhhhchhhhhhHHH--HHHHHhhccc-cCCCChHHHHHHHHHH
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDF--VDSYSLSLLNPYMPNLSASW--LFQRAMSAKQ-QSDVSPDFINELLYVN  476 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~--ls~~~l~~L~~Ye~~~~~~~--~l~k~m~~~~-~~~~~~~~in~ll~~~  476 (584)
                      |++.+++++..+|+.|.++++.++  .+...   |+.|+..|+..+  .+.....+.. ... +++.+|++++.+
T Consensus       289 GI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~---l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  359 (398)
T TIGR02028       289 GIYFAAKSGRMCAEAIVEESRLGGAVTEEGD---LAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGREAFVEMC  359 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCCcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHh
Confidence            999999999999999999998765  34444   667877766543  1222222221 222 566666555544

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK10015 oxidoreductase; Provisional

Probab=99.97  E-value=4e-29  Score=271.79  Aligned_cols=325  Identities=17%  Similarity=0.190  Sum_probs=199.5

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcc---c--C
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATK---F--N  180 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~---~--~  180 (584)
                      .+|||||||| ++|+++|+.||++|++|+||||.+.++.+..  ..++...++.+.. ++.....++..+...   +  .
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~   82 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE   82 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence            3699999996 5799999999999999999999998875421  1244444444421 222111122211110   0  0


Q ss_pred             C--ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       181 ~--~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      .  ..+.|.. .....+....+.+++..|+++|.+++++.|++++.+++|+++..+++.+++...++.+++|++||+|||
T Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG  161 (429)
T PRK10015         83 ESAVTLDFHR-EQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG  161 (429)
T ss_pred             CCceEeeccc-CCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence            0  1122211 111111122467899999999999999999999999999999887777653334566899999999999


Q ss_pred             CChHHHhHhcCCCC--CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEE--------------EccCCCC
Q 007945          259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE--------------AFPAGSG  322 (584)
Q Consensus       259 ~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~--------------~fP~~~g  322 (584)
                      .+|.++++++....  +......+.... ..+.... +..+..  ..     ..+++|.              .||..+.
T Consensus       162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i-~~~~~~--~~-----~~g~~w~~~g~~~~g~~g~G~~~~~~d~  232 (429)
T PRK10015        162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQI-NDRFNI--TG-----EEGAAWLFAGSPSDGLMGGGFLYTNKDS  232 (429)
T ss_pred             cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHh-hHhhcC--CC-----CCCeEEEecCccCCCCCCceEEEEcCCc
Confidence            99999998765322  222221111111 2221100 000100  00     1234443              2343322


Q ss_pred             CCccEEEEEEcc-CCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccC-CCCCccCCCEEEeCCCCCCc
Q 007945          323 PLDRTTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQ  400 (584)
Q Consensus       323 ~~~~~~~L~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLvGDAA~~v  400 (584)
                         ...++.... .......++.+++++|. ..|.++.. +...+........+|.... ...+.+.+|+++|||||+++
T Consensus       233 ---v~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v  307 (429)
T PRK10015        233 ---ISLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFC  307 (429)
T ss_pred             ---EEEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccc
Confidence               333332221 11112346778887774 45544332 2233333334456776422 12357789999999999999


Q ss_pred             CC--CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHH
Q 007945          401 SP--VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLF  452 (584)
Q Consensus       401 ~P--ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l  452 (584)
                      ||  +++.|++.++.++..+|+.+.+|++.++.|...   |+.|+..|+.++.+
T Consensus       308 ~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~---l~~Y~~~~~~~~~~  358 (429)
T PRK10015        308 LNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASS---LAQYKRELEQSCVM  358 (429)
T ss_pred             cccCccccchhHHHHHHHHHHHHHHHHHhcCCCcccc---HHHHHHHHHHCHHH
Confidence            95  599999999999999999999999988887777   67899988877543

>PRK08013 oxidoreductase; Provisional

Probab=99.97  E-value=3.2e-29  Score=270.24  Aligned_cols=314  Identities=17%  Similarity=0.158  Sum_probs=193.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCcccccchh-hhc---
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA-TAT---  177 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~~---  177 (584)
                      +|||+|||| ++|+++|+.|+++|++|+||||++.+..       .+...|++.+++.|.++|+++...-... ...   
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            589999995 5799999999999999999999986432       2344578889999999999865211100 000   


Q ss_pred             ccCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945          178 KFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (584)
Q Consensus       178 ~~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlV  253 (584)
                      -++.   ..+.|... ....+ ..++.+++..|++.|.+++.+. |++++.++++++++.++++++|++.+|++++||+|
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv  160 (400)
T PRK08013         83 VWDKDSFGRIAFDDQ-SMGYS-HLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV  160 (400)
T ss_pred             EEeCCCCceEEEccc-ccCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence            0111   12222211 11111 1245789999999999999886 78999999999999888899999989999999999


Q ss_pred             EEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945          254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (584)
Q Consensus       254 IdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L  330 (584)
                      |+|||.+|.+|++++....   +...+.+. .+....+........+.          +.++++ .+|..++.  ...+.
T Consensus       161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~----------~~g~~~-~~p~~~~~--~~~~~  226 (400)
T PRK08013        161 VGADGANSWLRNKADIPLTFWDYQHHALVA-TIRTEEPHDAVARQVFH----------GDGILA-FLPLSDPH--LCSIV  226 (400)
T ss_pred             EEeCCCCcHHHHHcCCCccccccCcEEEEE-EEeccCCCCCEEEEEEc----------CCCCEE-EEECCCCC--eEEEE
Confidence            9999999999999876432   22333221 11111111111111110          123444 46765431  22233


Q ss_pred             EEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945          331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (584)
Q Consensus       331 ~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG  407 (584)
                      +........   ....+++.+.+...++.    .++..++... ...+|.......++..+|++|+|||||.+||+.|||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG  301 (400)
T PRK08013        227 WSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESE-RQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG  301 (400)
T ss_pred             EEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCC-ccEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence            322210000   00111111111111110    1122222211 123455443445778899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       408 ~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      +|++++|+..|++.|..++..+. +......|+.|+..
T Consensus       302 ~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~  338 (400)
T PRK08013        302 VNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYERS  338 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence            99999999999999998876542 11222237788864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.97  E-value=3.3e-29  Score=269.11  Aligned_cols=313  Identities=19%  Similarity=0.199  Sum_probs=198.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC--CCCCcccccCCHHHHHHHHHcCCCcccccchh-hh--ccc-C-C
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEA-TA--TKF-N-P  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~--~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~--~~~-~-~  181 (584)
                      .+||+|||| ++|+++|+.|+++|++|+||||.+  .....+...|+..+++.|+++|+++..+-... ..  ..+ . .
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            589999996 579999999999999999999982  12223566799999999999998522111010 00  001 1 1


Q ss_pred             -ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEc-CCcEEEccEEEEecC
Q 007945          182 -NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMG  258 (584)
Q Consensus       182 -~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~ArlVIdADG  258 (584)
                       ..+.|.. ..... ..+.+.+.+..|.+.|.+++.+.+ ++++.+++|+.++.++++++|+++ +|++++||+||+|||
T Consensus        82 ~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDA-AELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecc-cccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence             1233332 11111 345677999999999999999887 799999999999999999999988 899999999999999


Q ss_pred             CChHHHhHhcCCC----CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945          259 NFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (584)
Q Consensus       259 ~~S~v~rql~~~~----~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~  334 (584)
                      .+|.+|++++...    .+...+.+... ....+.......++..         .+.+.  .+|.++.   ....++...
T Consensus       160 ~~S~vR~~~~~~~~~~~~y~~~~l~~~~-~~~~~~~~~~~~~~~~---------~~~~~--~~p~~~~---~~~~~~~~~  224 (387)
T COG0654         160 ANSAVRRAAGIAEFSGRDYGQTALVANV-EPEEPHEGRAGERFTH---------AGPFA--LLPLPDN---RSSVVWSLP  224 (387)
T ss_pred             CchHHHHhcCCCCccCCCCCceEEEEEe-ecCCCCCCeEEEEecC---------CCceE--EEecCCC---ceeEEEECC
Confidence            9999999988322    22233322111 1111111111111111         01111  3455432   222222221


Q ss_pred             CCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      ....   ...+.++..+++.+.+|....  +...+... ....+|.......++..+|++|+|||||.+||+.|||+|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlg  301 (387)
T COG0654         225 PGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLA  301 (387)
T ss_pred             hhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchhhh
Confidence            1000   011223333444444544311  22222222 22356665445567888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~  446 (584)
                      ++|+..|++.|.++...+. +   .+.|..|+..-
T Consensus       302 l~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R  332 (387)
T COG0654         302 LEDAAALAEALAAAPRPGA-D---AAALAAYEARR  332 (387)
T ss_pred             hhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhh
Confidence            9999999999999987432 2   33477787643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.97  E-value=4.2e-29  Score=266.97  Aligned_cols=283  Identities=13%  Similarity=0.159  Sum_probs=179.9

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-----CcccccCCHHHHHHHHHcCCCcccccchhhhcccCC---
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP---  181 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-----~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~---  181 (584)
                      +||+|||| ++|+++|..|++.|++|+|+|+.+...     ..+...+++++++.|..+|+|+..  +.. ...+..   
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~-~~~~~~~~~   78 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL--EKF-VAEMQDIYV   78 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH--Hhh-cCCCcEEEE
Confidence            79999996 579999999999999999999985422     135677999999999999998642  111 111111   


Q ss_pred             ------ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          182 ------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       182 ------~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                            ..+.|...    ....+++.+++..|++.|.+++.+.+ ++++.+++++++..++++++|++.++ +++|++||
T Consensus        79 ~~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvI  153 (374)
T PRK06617         79 VDNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLI  153 (374)
T ss_pred             EECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEE
Confidence                  11222110    11224577999999999999999886 68999999999998889999998766 89999999


Q ss_pred             EecCCChHHHhHhcCCC--CCCceeeEEEEeeeccCCCc-ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          255 DAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       255 dADG~~S~v~rql~~~~--~~~~~~~~vg~~a~g~~~~~-~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      +|||.+|.+|++++...  .....|.+.. +....+... ..+.+..           .+.+| .+|.+++   ....++
T Consensus       154 gADG~~S~vR~~l~~~~~~~~y~~~~~~~-v~~~~~~~~~~~~~~~~-----------~g~~~-~lPl~~~---~~~~~v  217 (374)
T PRK06617        154 ICDGANSKVRSHYFANEIEKPYQTALTFN-IKHEKPHENCAMEHFLP-----------LGPFA-LLPLKDQ---YASSVI  217 (374)
T ss_pred             EeCCCCchhHHhcCCCcccccCCeEEEEE-EeccCCCCCEEEEEecC-----------CCCEE-EeECCCC---CeEEEE
Confidence            99999999999886543  1113332221 111111111 1122211           12344 4677654   212232


Q ss_pred             EccCCCC-C---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945          332 TYIDPQA-G---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (584)
Q Consensus       332 ~~~~~~~-~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG  407 (584)
                      +...... .   ..+. +.+.+.++..  ... .++.+.... ....+|++.....++..+|++|+|||||.+||++|||
T Consensus       218 w~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG  292 (374)
T PRK06617        218 WSTSSDQAALIVNLPV-EEVRFLTQRN--AGN-SLGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQG  292 (374)
T ss_pred             EeCCHHHHHHHHcCCH-HHHHHHHHHh--hch-hcCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCcccc
Confidence            2211000 0   0011 1122221111  000 122332221 2345777655555788899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 007945          408 FGSLTRHLGRLSTGV  422 (584)
Q Consensus       408 ~g~~lr~~~~La~~i  422 (584)
                      +|++++|+..|++.+
T Consensus       293 ~n~gl~Da~~La~~L  307 (374)
T PRK06617        293 LNQGIKDIEILSMIV  307 (374)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998766

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.97  E-value=1.5e-28  Score=263.68  Aligned_cols=311  Identities=18%  Similarity=0.158  Sum_probs=193.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCcccccc------hhh
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDID------EAT  175 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~w~Is~~~l~~L~~lGl~~~~ele------~~i  175 (584)
                      +|||+|||| ++|+++|+.|+++|++|+|||+.+....       .+...+++..++.|..+|+|+..+-.      ...
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            699999996 5799999999999999999999864321       13346888999999999998653210      100


Q ss_pred             hcccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       176 ~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                      ...+....+.|.. ..+.. ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++.+|++++|++||
T Consensus        85 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDA-AELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence            1112223333322 11111 12346789999999999999887 889999999999988888888988888899999999


Q ss_pred             EecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       255 dADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      +|||.+|++|++++.+.   .+.+.|.+........+.....+.+...           +... .+|..++   . ..+.
T Consensus       163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~-~~p~~~~---~-~~~v  226 (391)
T PRK08020        163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPS-----------GPRA-FLPLFDN---W-ASLV  226 (391)
T ss_pred             EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCC-----------CCEE-EeECCCC---c-EEEE
Confidence            99999999999987542   2223332211111110000001111111           1111 2454432   1 2222


Q ss_pred             EccCCCC----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945          332 TYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (584)
Q Consensus       332 ~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG  407 (584)
                      .+.....    ...+.+++.+.+.+.+|..    +..+...  ..+.+|++.....++..+|++|+|||||.+||+.|||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG  300 (391)
T PRK08020        227 WYDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG  300 (391)
T ss_pred             EECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence            2221000    0012233333333333321    1222211  2345677654455778899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       408 ~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ++++++|+..|++.+.++.+.+. +......|+.|+..
T Consensus       301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~  337 (391)
T PRK08020        301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRR  337 (391)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence            99999999999999998876542 22222346777764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.96  E-value=5.3e-28  Score=259.73  Aligned_cols=312  Identities=18%  Similarity=0.177  Sum_probs=192.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhh-hc---c
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEAT-AT---K  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i-~~---~  178 (584)
                      .+||+|||| ++|+++|+.|+++|++|+||||++.++.      .+...+++.+++.|..+|+|+...-.... ..   -
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            689999996 5799999999999999999999876431      23356888999999999998653211000 00   0


Q ss_pred             cC---CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEE
Q 007945          179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIID  255 (584)
Q Consensus       179 ~~---~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVId  255 (584)
                      |+   ...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++++++..++++++|++.+|++++|++||+
T Consensus        86 ~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence            11   011222211 11 11223567899999999999999999999999999999988888999888888999999999


Q ss_pred             ecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          256 AMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       256 ADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      |||.+|.++++++...+   +...+.+. ......+.... .+.+..           .+.+. .+|.+++   ...+.+
T Consensus       164 AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------~g~~~-~lP~~~~---~~~~~w  227 (392)
T PRK08773        164 ADGAASTLRELAGLPVSRHDYAQRGVVA-FVDTEHPHQATAWQRFLP-----------TGPLA-LLPFADG---RSSIVW  227 (392)
T ss_pred             ecCCCchHHHhhcCCceEEEeccEEEEE-EEEccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---ceEEEE
Confidence            99999999998865432   11111110 00001111111 111111           11122 3565543   222222


Q ss_pred             EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      .+......   ..+..+..+++.+.++..    ++.++.... ...+|.+.....++..+|++|+|||||.+||+.|||+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~  302 (392)
T PRK08773        228 TLPDAEAERVLALDEAAFSRELTQAFAAR----LGEVRVASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGV  302 (392)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hcCeEecCC-ccEeechhhhhhhhcCCcEEEEechhhcCCCchhchh
Confidence            22110000   001111122222221111    112221111 1245665444457788999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      |++++|+..|++.|.++++.+. +......|++|++.
T Consensus       303 n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~  338 (392)
T PRK08773        303 NLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWART  338 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence            9999999999999999886542 22334457888875

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.96  E-value=3.3e-28  Score=260.27  Aligned_cols=356  Identities=20%  Similarity=0.306  Sum_probs=227.8

Q ss_pred             cEEEEcc-hHHHHHHHHH--HhCCCeEEEEcCCCCC--CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          112 DVIVCGG-TLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~L--Ar~GlrVlLIEr~~~~--~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ||||||| ++|+++|..|  ++.|++|+|||+++..  ...+.|..+...+..           +++++.+.|+...+.+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-----------~~~~v~~~w~~~~v~~   69 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-----------LDSLVSHRWSGWRVYF   69 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-----------hHHHHheecCceEEEe
Confidence            8999995 5799999999  8889999999998876  344567655433221           3566778888777777


Q ss_pred             cCCCccccccccc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHh
Q 007945          187 EGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       187 ~~~~~l~~~~~l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~r  265 (584)
                      .+.......  .. +.|++..|++.|.+++. ++++++.+++|++++.+++++.|.+++|++++|++||||+|..|+..+
T Consensus        70 ~~~~~~~~~--~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~  146 (374)
T PF05834_consen   70 PDGSRILID--YPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKAR  146 (374)
T ss_pred             CCCceEEcc--cceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccccc
Confidence            654332221  22 36999999999999998 667788999999999998888899999999999999999998877332


Q ss_pred             HhcCCCCCCceeeEEEEeee---c-cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC--C
Q 007945          266 QIRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--G  339 (584)
Q Consensus       266 ql~~~~~~~~~~~~vg~~a~---g-~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~--~  339 (584)
                      .... ..      .+|....   . |+ .+.. .+.+.. +.. ...+.+++| +.|.++++   ...=+++-...+  .
T Consensus       147 ~~~~-Q~------f~G~~v~~~~~~f~-~~~~-~lMD~r-~~~-~~~~~~F~Y-~lP~~~~~---alvE~T~fs~~~~~~  211 (374)
T PF05834_consen  147 PLGL-QH------FYGWEVETDEPVFD-PDTA-TLMDFR-VPQ-SADGPSFLY-VLPFSEDR---ALVEETSFSPRPALP  211 (374)
T ss_pred             cccc-ce------eEEEEEeccCCCCC-CCce-EEEEec-ccC-CCCCceEEE-EEEcCCCe---EEEEEEEEcCCCCCC
Confidence            2210 11      1222221   1 21 1111 122221 111 001357777 78988652   111112111111  1


Q ss_pred             CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945          340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  419 (584)
Q Consensus       340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La  419 (584)
                      ...+++.+.+|++.+    +  +...++.+.+.|.||+......+...++++.+|+||+++||.||++|..+++.+..+|
T Consensus       212 ~~~~~~~l~~~l~~~----g--~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia  285 (374)
T PF05834_consen  212 EEELKARLRRYLERL----G--IDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIA  285 (374)
T ss_pred             HHHHHHHHHHHHHHc----C--CCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHH
Confidence            124555555565542    2  3456678889999999654555667788999999999999999999998888766666


Q ss_pred             HHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCCcccccccccccchh
Q 007945          420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFG  499 (584)
Q Consensus       420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~~~~  499 (584)
                      +.+.+.    ..+......+.+-.. +...+ |-+.+......+++++    ....||..|++||.+.+..||.++.++.
T Consensus       286 ~~l~~~----~~~~~~~~~~~~~~~-~~~~~-flr~l~~~~l~~~~~~----~~~~f~~~f~~l~~~~~~~FL~~~~~~~  355 (374)
T PF05834_consen  286 DALAKG----GAPLRAWSPLWPRER-WRDRR-FLRVLGLEVLLRLPPD----GRRIFFRMFFRLPPDRIARFLSERSSLA  355 (374)
T ss_pred             HHHhhc----cccccccccccHHHH-HHHHH-HHHHhcchhhcccChh----HHHHHHHHHhCCCHHHHHhHhcCCCCHH
Confidence            555432    111111111111111 11111 2222222222222333    5677788888999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 007945          500 PLAKTLGLVMLNK  512 (584)
Q Consensus       500 ~l~~~~~~~~~~~  512 (584)
                      +..++|+.+++..
T Consensus       356 ~~~~i~~~~p~~p  368 (374)
T PF05834_consen  356 DDLRIMLALPKRP  368 (374)
T ss_pred             HHHHHHHhCCCcC
Confidence            9999998776543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.96  E-value=1.1e-27  Score=260.65  Aligned_cols=325  Identities=15%  Similarity=0.195  Sum_probs=194.1

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcc---c--C
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATK---F--N  180 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~---~--~  180 (584)
                      ++|||||||| |+|+++|+.||++|++|+||||++.++.+..  ..++...++.+.. ++.....++..+..+   +  .
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~   82 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTE   82 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcC
Confidence            3699999995 6799999999999999999999998775422  1244444444321 111111112211110   0  0


Q ss_pred             Cce--eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          181 PNR--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       181 ~~~--v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      ...  +.|... ....+....+.+++..|+++|.+++.+.|++++.+++|+++..+++.+++...+|.+++|++||+|||
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G  161 (428)
T PRK10157         83 KSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG  161 (428)
T ss_pred             CCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence            011  111111 11111223467899999999999999999999999999999887777654445677899999999999


Q ss_pred             CChHHHhHhcCCCC--CCceeeEEEEeeeccCC-----------C-cceeEEccCCcccccCCCCceEEEEEccCCCCCC
Q 007945          259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKD-----------N-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL  324 (584)
Q Consensus       259 ~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~~-----------~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~  324 (584)
                      .+|.++++++...+  +..+...+..... .+.           . ....++... +..   + .-++.| .|+..+.  
T Consensus       162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~-~~~---g-~~ggG~-~~~~~~~--  232 (428)
T PRK10157        162 VNSILAEKLGMAKRVKPTDVAVGVKELIE-LPKSVIEDRFQLQGNQGAACLFAGS-PTD---G-LMGGGF-LYTNENT--  232 (428)
T ss_pred             CCHHHHHHcCCCCCCCCcEEEEEEEEEEE-cCHHHHHHhhccCCCCCeEEEEEEC-CCC---C-CcCcee-EEEcCCe--
Confidence            99999998765432  2222221111111 110           0 001111111 100   0 011234 3555432  


Q ss_pred             ccEEEEEEccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC-CCCccCCCEEEeCCCCCCcCC
Q 007945          325 DRTTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSP  402 (584)
Q Consensus       325 ~~~~~L~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLvGDAA~~v~P  402 (584)
                       ...++....+ ......+..+++++| ...|..+.. +...+........+|..... ..+.+.+++++|||||++++|
T Consensus       233 -~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p  309 (428)
T PRK10157        233 -LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMN  309 (428)
T ss_pred             -EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccc
Confidence             3333332211 111223666777665 445544322 11111111122335543211 225678999999999999999


Q ss_pred             C--CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH
Q 007945          403 V--SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW  450 (584)
Q Consensus       403 l--tGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~  450 (584)
                      +  +|.|+..++..+..+|+.+.++++.++.++..   |..|+..++..+
T Consensus       310 ~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~---l~~Y~~~l~~~~  356 (428)
T PRK10157        310 LGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQK---LAEYRQHLESGP  356 (428)
T ss_pred             cCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhh---HHHHHHHHHHhH
Confidence            5  99999999999999999999999988877777   677888777663

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.96  E-value=8.4e-28  Score=257.61  Aligned_cols=310  Identities=20%  Similarity=0.192  Sum_probs=193.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh---cccCC-c--
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-N--  182 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~-~--  182 (584)
                      .|||||||| ++|+++|..|+++|++|+||||.+.+...+.+.++..+++.|.++|+|++..-.....   .-++. .  
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            589999996 5799999999999999999999987665677788888999999999986422100000   00000 0  


Q ss_pred             ----eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          183 ----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       183 ----~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                          ...|.. ..+ ....+++.+++..+.+.|.+++.+.++..+.+++|++++.++++++|++++|++++||+||+|||
T Consensus        87 ~~~~~~~~~~-~~~-~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         87 IRAPEVRFRA-AEI-GEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCCceEEEcH-Hhc-CCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence                011110 000 11234567899999999999998887655889999999988899999988888999999999999


Q ss_pred             CChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945          259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (584)
Q Consensus       259 ~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~  334 (584)
                      .+|.++++++...   .+...+.++. .....+.... .+++.      +     .+.++ .+|.+++   ...+++...
T Consensus       165 ~~S~vr~~~g~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~------~-----~g~~~-~~Pl~~~---~~~~v~~~~  228 (388)
T PRK07494        165 RNSPVREAAGIGVRTWSYPQKALVLN-FTHSRPHQNVSTEFHT------E-----GGPFT-QVPLPGR---RSSLVWVVR  228 (388)
T ss_pred             CCchhHHhcCCCceecCCCCEEEEEE-EeccCCCCCEEEEEeC------C-----CCcEE-EEECCCC---cEEEEEECC
Confidence            9999999986542   2233332211 1111111111 12211      1     22333 4677643   233333221


Q ss_pred             CCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      ....   ...+.+++.+.+.+.++..    ++.++... ....+|+....+.++..+|++|+|||||.+||++|||+|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~  303 (388)
T PRK07494        229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEP-GRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG  303 (388)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEcc-CCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence            1000   0012222222222222221    12222111 12346665444446778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~  446 (584)
                      ++|+..|++.|.... .+..+   .+.|+.|+...
T Consensus       304 l~Da~~La~~L~~~~-~~~~~---~~~L~~Y~~~R  334 (388)
T PRK07494        304 LRDVATLVEIVEDRP-EDPGS---AAVLAAYDRAR  334 (388)
T ss_pred             HHHHHHHHHHHHhcC-CCcch---HHHHHHHHHHH
Confidence            999999999987632 12112   23477888754

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.96  E-value=6.4e-28  Score=260.20  Aligned_cols=314  Identities=14%  Similarity=0.097  Sum_probs=190.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---------CCcccccCCHHHHHHHHHcCCCcccccchhhhcc-
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATK-  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---------~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~-  178 (584)
                      .|||+|||| ++|+++|+.|+++|++|+||||++..         ..++...+++..++.|..+|+++..  ....... 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~   79 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGI--AARRASPY   79 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhh--hHhhCccc
Confidence            589999996 57999999999999999999998731         1224456889999999999998542  1100000 


Q ss_pred             -----cCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEc
Q 007945          179 -----FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS  250 (584)
Q Consensus       179 -----~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~A  250 (584)
                           ++.   ..+.|... .... ..+++.+++..|.+.|.+++.+.|++++.++++++++.++++++|++.+|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a  157 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAA-SVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA  157 (405)
T ss_pred             eeEEEEcCCCCceEEeccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence                 111   11222211 1111 1234568888999999999988899999999999999888899999888889999


Q ss_pred             cEEEEecCCChHHHhHhcCCCCC---CceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945          251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (584)
Q Consensus       251 rlVIdADG~~S~v~rql~~~~~~---~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~  327 (584)
                      ++||+|||.+|.+|++++...+.   ...+.+. . .. .+.......+...   .+     .+.++ .+|.+.+.....
T Consensus       158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~---~~-----~g~~~-~~P~~~~~~~~~  225 (405)
T PRK05714        158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVT-S-VR-CSEPHRATAWQRF---TD-----DGPLA-FLPLERDGDEHW  225 (405)
T ss_pred             CEEEEecCCCchhHHhcCCCcccccCCceEEEE-E-EE-cCCCCCCEEEEEc---CC-----CCCeE-EeeCCCCCCCCe
Confidence            99999999999999998754322   1222111 1 10 0100000000000   00     12333 467653211111


Q ss_pred             EEEEEccC-CCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCC
Q 007945          328 TYMFTYID-PQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV  403 (584)
Q Consensus       328 ~~L~~~~~-~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Pl  403 (584)
                      ..++.... ....   ..+.+++.+++.+.++..    +.++..... ...+|++.....++..+|++|+|||||.+||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~  300 (405)
T PRK05714        226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGR----LGEVLSADP-RLCVPLRQRHAKRYVEPGLALIGDAAHTIHPL  300 (405)
T ss_pred             EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHH----hCCceecCC-ccEEecceeehhhhccCCEEEEEeccccCCCc
Confidence            22222111 0000   001112222222222110    111110111 12356654444577889999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHhCCC-CChhhhHhhhchhhhh
Q 007945          404 SFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYMPNL  446 (584)
Q Consensus       404 tGgG~g~~lr~~~~La~~i~~AL~~~~-ls~~~l~~L~~Ye~~~  446 (584)
                      .|||+|++++|+..|++.|..++..+. .+.  .+.|+.|+..-
T Consensus       301 ~GQG~n~al~DA~~La~~L~~~~~~g~~~~~--~~~L~~Ye~~R  342 (405)
T PRK05714        301 AGQGVNLGFLDAAVLAEVLLHAAERGERLAD--VRVLSRFERRR  342 (405)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHH
Confidence            999999999999999999988876542 221  23477787643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.96  E-value=1.9e-27  Score=259.48  Aligned_cols=316  Identities=18%  Similarity=0.187  Sum_probs=190.4

Q ss_pred             ccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCCC-------------CcccccCCHHHHHHHHHcCCCcccccc
Q 007945          111 FDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID  172 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr----~GlrVlLIEr~~~~~-------------~~r~w~Is~~~l~~L~~lGl~~~~ele  172 (584)
                      |||+|||| ++|+++|+.|++    +|++|+||||++.+.             ..+...|++.+++.|..+|+|+...-.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            79999996 579999999998    899999999965332             124567899999999999998652111


Q ss_pred             hhh-h---cccCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEe-------C
Q 007945          173 EAT-A---TKFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY-------E  235 (584)
Q Consensus       173 ~~i-~---~~~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G---~~i~~~t~v~~v~~~-------~  235 (584)
                      ... .   ..++.   ..+.|....   ....+++.+++..|.+.|.+++.+.+   ++++.+++|++++.+       +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~  157 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS  157 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence            000 0   00111   112222211   11233567899999999999998875   799999999999753       4


Q ss_pred             CeEEEEEcCCcEEEccEEEEecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCC-CcceeEEccCCcccccCCCCce
Q 007945          236 NAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQ  311 (584)
Q Consensus       236 ~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~-~~~~di~~~~~~~~~~~~~~~~  311 (584)
                      ++++|++.+|++++|++||+|||.+|.+|++++...   .+.+.+.+........+. +...+.+..           .+
T Consensus       158 ~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~-----------~g  226 (437)
T TIGR01989       158 NWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP-----------TG  226 (437)
T ss_pred             CceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC-----------CC
Confidence            678899989999999999999999999999987543   233333221111111111 111122211           12


Q ss_pred             EEEEEccCCCCCCccEEEEEEccCCCC------CCccHHHHHHHHHh----hCcc-------------ccccc-------
Q 007945          312 LFWEAFPAGSGPLDRTTYMFTYIDPQA------GSPKLEELLERYWD----LMPE-------------YQGVT-------  361 (584)
Q Consensus       312 ~~W~~fP~~~g~~~~~~~L~~~~~~~~------~~~~l~~l~~~~~~----~lp~-------------~~~~~-------  361 (584)
                      .++ .+|.+++   ....++.......      ....+.+.+.+.+.    ..|.             ..+..       
T Consensus       227 ~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  302 (437)
T TIGR01989       227 PIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSC  302 (437)
T ss_pred             CEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            233 3566543   2222222211000      00122222211110    0000             00000       


Q ss_pred             --CCc--eeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhH
Q 007945          362 --LDN--LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLS  437 (584)
Q Consensus       362 --l~~--~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~  437 (584)
                        ...  .++.......+|+....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|.++++.+. +....+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~~~  381 (437)
T TIGR01989       303 FQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGSIS  381 (437)
T ss_pred             cccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhHHH
Confidence              000  011111124566654455577889999999999999999999999999999999999999887542 222223


Q ss_pred             hhhchhhh
Q 007945          438 LLNPYMPN  445 (584)
Q Consensus       438 ~L~~Ye~~  445 (584)
                      .|+.|+..
T Consensus       382 ~L~~Y~~~  389 (437)
T TIGR01989       382 SLKPYERE  389 (437)
T ss_pred             HHHHHHHH
Confidence            46777764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.96  E-value=1.2e-27  Score=258.41  Aligned_cols=313  Identities=18%  Similarity=0.132  Sum_probs=190.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCC-----CcccccCCHHHHHHHHHcCCCcccccc-hhhh---cc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDDID-EATA---TK  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~-----~~r~w~Is~~~l~~L~~lGl~~~~ele-~~i~---~~  178 (584)
                      .|||+|||| ++|+++|+.|+++|++|+|||++. .+.     ..+...++.++++.|.++|+++...-. ....   ..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            589999996 579999999999999999999973 211     234457899999999999998652100 0000   01


Q ss_pred             cCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          179 FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       179 ~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                      |+.   ..+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++|++||
T Consensus        84 ~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence            111   12223211 1111 12345688888999999998875 689999999999998888999999899999999999


Q ss_pred             EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      +|||.+|.+|++++....   +...+.+ +......+.+.....++.     +     .+.+. .+|..++.  .....+
T Consensus       162 gADG~~S~vR~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-----~-----~g~~~-~lp~~~~~--~~~~~w  227 (405)
T PRK08850        162 GADGANSWLRRQMDIPLTHWDYGHSALV-ANVRTVDPHNSVARQIFT-----P-----QGPLA-FLPMSEPN--MSSIVW  227 (405)
T ss_pred             EeCCCCChhHHHcCCCeeEEeeccEEEE-EEEEccCCCCCEEEEEEc-----C-----CCceE-EEECCCCC--eEEEEE
Confidence            999999999999875432   2223321 111111111111111111     0     12222 35665431  222222


Q ss_pred             EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      ........   ..+.++..++..+.++..    +..++.... ...+|.......++..+|++|+|||||.+||+.|||+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~  302 (405)
T PRK08850        228 STEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGE-RQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGV  302 (405)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEccc-ccEEecceeeccccccCcEEEEEhhhhcCCccccccH
Confidence            22110000   001112222222222110    112221111 1245655444457788999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP  444 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~  444 (584)
                      |++++|+..|++.|..++..+. +......|+.|+.
T Consensus       303 n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~  337 (405)
T PRK08850        303 NLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYER  337 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHH
Confidence            9999999999999998875432 2222234677775

>PRK06185 hypothetical protein; Provisional

Probab=99.96  E-value=3.9e-27  Score=254.01  Aligned_cols=311  Identities=15%  Similarity=0.097  Sum_probs=192.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhccc-------
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKF-------  179 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~-------  179 (584)
                      .+|||+|||| ++|+++|+.|+++|++|+|||+++... ..+...+++.+++.|..+|+|++.  .......+       
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~--~~~~~~~~~~~~~~~   82 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERF--LELPHQKVRTLRFEI   82 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHH--hhcccceeeeEEEEE
Confidence            3699999996 579999999999999999999986432 234557888999999999998642  11100001       


Q ss_pred             CCce---eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEcc
Q 007945          180 NPNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSSH  251 (584)
Q Consensus       180 ~~~~---v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~---V~~~~G~-~i~Ar  251 (584)
                      ....   +.|..   ...+..+.+.+++..+.+.|.+++.+. |++++.+++++++..+++.++   ++..+|+ +++|+
T Consensus        83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~  159 (407)
T PRK06185         83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD  159 (407)
T ss_pred             CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence            0111   11111   111122344588889999999998775 789999999999988877653   3334564 79999


Q ss_pred             EEEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945          252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (584)
Q Consensus       252 lVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~  328 (584)
                      +||+|||.+|.++++++...+   +...+..+.  ... +....... +  ....     ..++++ .+|.+ +   ...
T Consensus       160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~-~~~~~~~~-~--~~~~-----~~g~~~-llP~~-~---~~~  223 (407)
T PRK06185        160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR-EPDDPESL-M--GRFG-----PGQGLI-MIDRG-D---YWQ  223 (407)
T ss_pred             EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCC-CCCCCccc-c--eEec-----CCcEEE-EEcCC-C---eEE
Confidence            999999999999998875432   222211110  000 00000000 0  0011     134555 46765 3   222


Q ss_pred             EEEEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945          329 YMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (584)
Q Consensus       329 ~L~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG  405 (584)
                      ..+........   ..+.+++.+++.+..|.+... ++.++.... ...+|+......++..+|++|+|||||.+||++|
T Consensus       224 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~G  301 (407)
T PRK06185        224 CGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGG  301 (407)
T ss_pred             EEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcccc
Confidence            22222211111   113344444443444543321 222221111 1345655444557788999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       406 gG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ||+|++++|+..|++.|.++++.++.+.   +.|+.|+..
T Consensus       302 qG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~  338 (407)
T PRK06185        302 VGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRR  338 (407)
T ss_pred             cchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHH
Confidence            9999999999999999999987764433   447788874

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.96  E-value=2.9e-27  Score=253.56  Aligned_cols=305  Identities=17%  Similarity=0.186  Sum_probs=183.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-------CcccccCCHHHHHHHHHcCCCcccccchh--hh--c
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEA--TA--T  177 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-------~~r~w~Is~~~l~~L~~lGl~~~~ele~~--i~--~  177 (584)
                      .|||+|||| ++|+++|+.|+++|++|+|+|+.+...       ..+...+++.+++.|..+|+++...-...  +.  .
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            489999996 579999999999999999999875321       12334689999999999999864210000  00  0


Q ss_pred             ccC--CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          178 KFN--PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       178 ~~~--~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                      .+.  .....|.. ..+.. ..+++.+++..|...|.+++.+. |++++.++++++++.++++++|++++|++++|++||
T Consensus        83 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvI  160 (384)
T PRK08849         83 TWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVI  160 (384)
T ss_pred             EEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEE
Confidence            010  01111211 11111 12345577777888998888765 679999999999999899999999999999999999


Q ss_pred             EecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945          255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (584)
Q Consensus       255 dADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L  330 (584)
                      +|||.+|++|++++.+.   .+.+.+.++.. ....++.+. .+.+...++          ..  ..|..++   ...++
T Consensus       161 gADG~~S~vR~~~gi~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~----------~~--~~pl~~~---~~~~~  224 (384)
T PRK08849        161 GADGANSQVRQLAGIGITAWDYRQHCMLINV-ETEQPQQDITWQQFTPSGP----------RS--FLPLCGN---QGSLV  224 (384)
T ss_pred             EecCCCchhHHhcCCCceeccCCCeEEEEEE-EcCCCCCCEEEEEeCCCCC----------EE--EeEcCCC---ceEEE
Confidence            99999999999987542   22333322111 111111111 111111111          01  1344322   11111


Q ss_pred             EEccCCCC----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          331 FTYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       331 ~~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      + +.....    ...+.++..+++.+.+|..    +..+++.  ....+|+......++..+|++|+|||||.++|+.||
T Consensus       225 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQ  297 (384)
T PRK08849        225 W-YDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQ  297 (384)
T ss_pred             E-ECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCccc
Confidence            1 111000    0002233333333334321    1223222  234566654344577889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      |+|++++|+..|++.+..   .+..+..   .|+.|+..
T Consensus       298 G~n~al~Da~~L~~~l~~---~~~~~~~---~L~~Ye~~  330 (384)
T PRK08849        298 GVNLGFKDVDVLLAETEK---QGVLNDA---SFARYERR  330 (384)
T ss_pred             hHhHHHHHHHHHHHHHHh---cCCCcHH---HHHHHHHH
Confidence            999999999998876642   2221222   37778764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.96  E-value=5.8e-27  Score=252.09  Aligned_cols=312  Identities=21%  Similarity=0.206  Sum_probs=191.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCcccccchhhhc--cc-C
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT--KF-N  180 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~---~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~--~~-~  180 (584)
                      .|||+|||| ++|+++|+.|+++|  ++|+||||++....   .+...+++..++.|..+|+++...-......  .+ +
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD   80 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence            389999996 57999999999995  99999999975432   3556799999999999999854211000000  00 0


Q ss_pred             -----C---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945          181 -----P---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (584)
Q Consensus       181 -----~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl  252 (584)
                           .   ..+.|.+.  ......+.+.+++..|.+.|.+++.+.|++++.++++++++.+++++.|++.+|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  158 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL  158 (403)
T ss_pred             CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence                 0   01122110  0001122346899999999999999999999999999999988889999988888999999


Q ss_pred             EEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945          253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (584)
Q Consensus       253 VIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~  329 (584)
                      ||+|||.+|.++++++....   +...+.++ ......+.......++     .     ..+++| .+|.+++   ...+
T Consensus       159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~  223 (403)
T PRK07333        159 LVAADGARSKLRELAGIKTVGWDYGQSGIVC-TVEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL  223 (403)
T ss_pred             EEEcCCCChHHHHHcCCCcccccCCCEEEEE-EEEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence            99999999999998865421   22222211 1111101111111111     1     134566 5898765   2333


Q ss_pred             EEEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       330 L~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      .+........   ........+...+.+...    ++.++.... ...+|.......++..+|++|+|||||.++|++||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~Gq  298 (403)
T PRK07333        224 VWTERTADAERLVALDDLVFEAELEQRFGHR----LGELKVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQ  298 (403)
T ss_pred             EEECCHHHHHHHHCCCHHHHHHHHHHHhhhh----cCceEeccC-ccEeechhhhhhhccCCCEEEEechhhcCCCcccc
Confidence            3322110000   001111111111111110    112211111 11344432233466789999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP  444 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~  444 (584)
                      |++++++|+..|++.|..+++.+. +....+.|+.|+.
T Consensus       299 G~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye~  335 (403)
T PRK07333        299 GLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQR  335 (403)
T ss_pred             chhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHH
Confidence            999999999999999999886432 1112234778886

>PRK08244 hypothetical protein; Provisional

Probab=99.96  E-value=1.3e-26  Score=256.66  Aligned_cols=307  Identities=20%  Similarity=0.253  Sum_probs=189.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh--cccCC--ce
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA--TKFNP--NR  183 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~--~~~~~--~~  183 (584)
                      +|||+|||| |+|+++|+.|+++|++|+||||++.+.. .+...+++..++.|..+|++++..-.....  ..+..  ..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR   81 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence            589999995 5799999999999999999999987542 355678899999999999875421000000  00100  00


Q ss_pred             eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC-cEEEccEEEEecCCC
Q 007945          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMGNF  260 (584)
Q Consensus       184 v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G-~~i~ArlVIdADG~~  260 (584)
                      +.|.   ....+....+.+++..+++.|.+++++.|++++.+++++++..++++++|++.  +| ++++|++||+|||.+
T Consensus        82 ~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~  158 (493)
T PRK08244         82 LDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG  158 (493)
T ss_pred             CCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence            1111   01111223345888999999999999899999999999999988888887765  35 479999999999999


Q ss_pred             hHHHhHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCC
Q 007945          261 SPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ  337 (584)
Q Consensus       261 S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~  337 (584)
                      |.++++++...   .+...+. ++...  .++......+..   ..     ..+.+| .+|.+++   ...+.+...+..
T Consensus       159 S~vR~~lgi~~~g~~~~~~~~-~~~~~--~~~~~~~~~~~~---~~-----~~g~~~-~~P~~~~---~~~~~~~~~~~~  223 (493)
T PRK08244        159 SIVRKQAGIAFPGTDATFTAM-LGDVV--LKDPPPSSVLSL---CT-----REGGVM-IVPLSGG---IYRVLIIDPERP  223 (493)
T ss_pred             hHHHHhcCCCccCCCcceEEE-EEEEE--ecCCCCcceeEE---Ee-----CCceEE-EEECCCC---eEEEEEEcCCcc
Confidence            99999986542   1222221 11111  110000001000   01     124555 5888765   222222221110


Q ss_pred             --C-C-CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHH
Q 007945          338 --A-G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR  413 (584)
Q Consensus       338 --~-~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr  413 (584)
                        . . ..+.+++.+.+.+.++....  .....+.    ..++.......++..+||+|+|||||.++|++|||+|++++
T Consensus       224 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~----~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~  297 (493)
T PRK08244        224 QVPKDEPVTLEELKTSLIRICGTDFG--LNDPVWM----SRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQ  297 (493)
T ss_pred             cccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeEE----EecccceeeHhhhccCcEEEeecceeccCCccccccccchh
Confidence              1 1 12445554444333321111  1111111    12333222333567799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945          414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP  444 (584)
Q Consensus       414 ~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~  444 (584)
                      |+..|++.|+.+++. ......   |..|+.
T Consensus       298 DA~~La~~La~~l~g-~~~~~l---L~~Ye~  324 (493)
T PRK08244        298 DAMNLGWKLAAAIKG-WAPDWL---LDSYHA  324 (493)
T ss_pred             hHHHHHHHHHHHHcC-CCCchh---hhhhHH
Confidence            999999999998853 223322   555654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.96  E-value=1.2e-26  Score=250.80  Aligned_cols=312  Identities=21%  Similarity=0.213  Sum_probs=186.0

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCcccccchhhhc--cc-C-
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT--KF-N-  180 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~---~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~--~~-~-  180 (584)
                      .+|||+|||| ++|+++|..|+++|++|+|+||++.++.   .+...+++..++.|..+|++++..-......  .+ + 
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            3699999996 5799999999999999999999987542   2345789999999999999865210000000  00 0 


Q ss_pred             --CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEccEEE
Q 007945          181 --PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLII  254 (584)
Q Consensus       181 --~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~-G--~~i~ArlVI  254 (584)
                        ...+.|.. ..+.. ....+.+.+..|.+.|.+++.+. |++++.++++++++.++++++|++.+ +  .+++||+||
T Consensus        97 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvI  174 (415)
T PRK07364         97 DYPGVVKFQP-TDLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVV  174 (415)
T ss_pred             CCCceeeecc-ccCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEE
Confidence              01112211 01111 11223344557888999988876 68999999999998888888888863 2  369999999


Q ss_pred             EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCc-ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945          255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (584)
Q Consensus       255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~-~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L  330 (584)
                      +|||.+|.+|++++....   +...|..+ .+....+... ..+.+.           ..+++| .+|.+++   ....+
T Consensus       175 gADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~~~  238 (415)
T PRK07364        175 AADGARSPIRQAAGIKTKGWKYWQSCVTA-TVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQIV  238 (415)
T ss_pred             EeCCCCchhHHHhCCCceeecCCCEEEEE-EEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEEEE
Confidence            999999999998864321   11222111 1111111000 001111           123456 5788754   22222


Q ss_pred             EEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945          331 FTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (584)
Q Consensus       331 ~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG  407 (584)
                      +.......   ...+.++..+.+.+.++...    ..++.... ...+|+......++..+|++|+|||||.++|++|||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG  313 (415)
T PRK07364        239 WTAPHAQAKALLALPEAEFLAELQQRYGDQL----GKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQG  313 (415)
T ss_pred             EECCHHHHHHHHCCCHHHHHHHHHHHhhhhh----cCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCccccc
Confidence            22211000   00011222222222222111    11111111 123455433334677899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhh
Q 007945          408 FGSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPN  445 (584)
Q Consensus       408 ~g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~  445 (584)
                      ++++++|+..|++.+..+++.+ +..  ..+.|+.|+..
T Consensus       314 ~n~al~DA~~La~~L~~~~~~~~~~~--~~~~L~~Y~~~  350 (415)
T PRK07364        314 LNLGIRDAAALAQVLQTAHQRGEDIG--SLAVLKRYERW  350 (415)
T ss_pred             HhHHHHHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHH
Confidence            9999999999999998887543 222  12347778773

>PRK07190 hypothetical protein; Provisional

Probab=99.96  E-value=2e-26  Score=254.23  Aligned_cols=297  Identities=15%  Similarity=0.153  Sum_probs=186.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhh---hcccCCce-
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT---ATKFNPNR-  183 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i---~~~~~~~~-  183 (584)
                      .+||+|||| |+|+++|+.|+++|++|+||||.+.+.. .+.-.++..+++.|..+|++++..-....   ...|.... 
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~   84 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF   84 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence            589999995 6799999999999999999999986542 23445888999999999987532100000   01111111 


Q ss_pred             eeecC--CCccc-ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          184 CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       184 v~f~~--~~~l~-~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      +....  ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++..+++++++.+.+|++++||+||+|||.+
T Consensus        85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~  164 (487)
T PRK07190         85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSR  164 (487)
T ss_pred             EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCC
Confidence            10000  00000 0111224577888999999999999999999999999999999998888888899999999999999


Q ss_pred             hHHHhHhcCCCC---CCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCC
Q 007945          261 SPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP  336 (584)
Q Consensus       261 S~v~rql~~~~~---~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~  336 (584)
                      |.+|++++++.+   +......+.... ..+++.. ..+.+.    .+    .+.++|  +|..++   ...++..+.. 
T Consensus       165 S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~-~~~~~~----~~----~g~~~~--~p~~~~---~~r~~~~~~~-  229 (487)
T PRK07190        165 SFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVP-EIIVFQ----AE----TSDVAW--IPREGE---IDRFYVRMDT-  229 (487)
T ss_pred             HHHHHHcCCCccccccceeEEEEEEEEccCCCCCc-ceEEEE----cC----CCCEEE--EECCCC---EEEEEEEcCC-
Confidence            999999876532   111111111111 1121100 011110    01    235565  566543   2222222211 


Q ss_pred             CCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCcc-CCCEEEeCCCCCCcCCCCCCchhhHHHHH
Q 007945          337 QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHL  415 (584)
Q Consensus       337 ~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~-~~rvlLvGDAA~~v~PltGgG~g~~lr~~  415 (584)
                        ...+.++..+...+.+... ...+.+..+    ...+|+......++. .+||+|+|||||.++|+.|||+|.+++|+
T Consensus       230 --~~~t~~~~~~~l~~~~~~~-~~~~~~~~w----~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA  302 (487)
T PRK07190        230 --KDFTLEQAIAKINHAMQPH-RLGFKEIVW----FSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADA  302 (487)
T ss_pred             --CCCCHHHHHHHHHHhcCCC-CCceEEEEE----EEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHH
Confidence              1234454444443323111 111122222    134555444455675 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 007945          416 GRLSTGVYEAVRG  428 (584)
Q Consensus       416 ~~La~~i~~AL~~  428 (584)
                      ..|++.|+.+++.
T Consensus       303 ~nL~wkLa~v~~g  315 (487)
T PRK07190        303 FNLIWKLNMVIHH  315 (487)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999988764

>PRK06834 hypothetical protein; Provisional

Probab=99.96  E-value=1.7e-26  Score=255.04  Aligned_cols=306  Identities=20%  Similarity=0.250  Sum_probs=190.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCcccccchhhh--cccCCcee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRC  184 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~--~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~--~~~~~~~v  184 (584)
                      ++||||||| ++|+++|+.|+++|++|+||||.+.+.  ..+...++..+++.|..+|++++..-.....  ..+.  ..
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~--~~   80 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA--AT   80 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee--eE
Confidence            589999995 679999999999999999999998643  2355679999999999999875421000000  0111  11


Q ss_pred             eecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       185 ~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      .+.. ..+..+..+.+.+.+..+++.|.+++++.|++++.++++++++.++++++|++.+|++++|++||+|||.+|.++
T Consensus        81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence            1110 111112233456788899999999999999999999999999999999999888888999999999999999999


Q ss_pred             hHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCC-CCCCccEEEEEEccCCCC-C
Q 007945          265 KQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G  339 (584)
Q Consensus       265 rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~-~g~~~~~~~L~~~~~~~~-~  339 (584)
                      +++++..   .+...+.++..   ..++.....+..     .     ..+.+. .+|.. ++   ...+++....... .
T Consensus       160 ~~lgi~~~g~~~~~~~~~~dv---~~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~  222 (488)
T PRK06834        160 KAAGIDFPGWDPTTSYLIAEV---EMTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG  222 (488)
T ss_pred             hhcCCCCCCCCcceEEEEEEE---EecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence            9986532   22222211111   011000000000     0     112222 24443 22   2222222111111 1


Q ss_pred             CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945          340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  419 (584)
Q Consensus       340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La  419 (584)
                      ..+.+++.+.+.+.++.  ........+.    ..++.......++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus       223 ~~~~~~~~~~l~~~~g~--~~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa  296 (488)
T PRK06834        223 EPTLDDLREALIAVYGT--DYGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG  296 (488)
T ss_pred             CCCHHHHHHHHHHhhCC--CCccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence            22444444444333321  1111122111    22343323445778899999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          420 TGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      +.|+..++.. ....   .|..|+..
T Consensus       297 wkLa~vl~g~-~~~~---lLd~Ye~e  318 (488)
T PRK06834        297 WKLAQVVKGT-SPES---LLDTYHAE  318 (488)
T ss_pred             HHHHHHHcCC-CcHH---HHHHHHHH
Confidence            9999988632 2222   35666653

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.96  E-value=1.2e-26  Score=247.52  Aligned_cols=309  Identities=18%  Similarity=0.186  Sum_probs=193.1

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhhhccc-----
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF-----  179 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~-----  179 (584)
                      ||+|||| ++|+++|..|+++|++|+|+||++.++.      .+...+++..++.|.++|++++..  ......+     
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~--~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIE--PDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhh--hhcCCCceEEEE
Confidence            8999996 5799999999999999999999987643      245678999999999999875422  1001111     


Q ss_pred             -CCc---eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       180 -~~~---~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                       +..   .+.+... ... .....+.+++..|.+.|.+.+.+.| ++++.+++|+++..++++++|++++|+++.|++||
T Consensus        79 ~~~~~~~~~~~~~~-~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi  156 (385)
T TIGR01988        79 SDGGSFGALHFDAD-EIG-LEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV  156 (385)
T ss_pred             EeCCCCceEEechh-hcC-CCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence             110   1111110 000 0123456889999999999999888 89999999999998888899998899899999999


Q ss_pred             EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      +|||.+|.++++++...+   +...+.+. ......+........     ..     ..+++| .||..++   ...+.+
T Consensus       157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~  221 (385)
T TIGR01988       157 GADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW  221 (385)
T ss_pred             EeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence            999999999999864322   11222111 111010010010001     11     124455 5888765   233333


Q ss_pred             EccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      ...+...   ...+.+++.+.+.+.++...    .++.... ....+|+......++..+||+|+|||||.++|++|+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~  296 (385)
T TIGR01988       222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL  296 (385)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence            3321100   00122233333323222111    1111111 12345664433446678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhhh
Q 007945          409 GSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~~  446 (584)
                      +++++|+..|++.|..++..+ +.+  ..+.++.|+...
T Consensus       297 ~~Ai~da~~La~~L~~~~~~~~~~~--~~~~l~~y~~~r  333 (385)
T TIGR01988       297 NLGLRDVAALAEVLEDARRRGEDIG--SPRVLQRYERRR  333 (385)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHH
Confidence            999999999999999887643 111  122366777643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.96  E-value=3.5e-26  Score=234.17  Aligned_cols=287  Identities=20%  Similarity=0.219  Sum_probs=184.9

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      |||+|||| ++|+++|..|+++|++|+||||++.++.. ....++...++.+...+.   ...     ..++...+....
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~-----~~~~~~~~~~~~   72 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLE---LIV-----NLVRGARFFSPN   72 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCch---hhh-----hheeeEEEEcCC
Confidence            79999996 57999999999999999999999876532 223466665555433221   000     011111111111


Q ss_pred             CCc--ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCChHHHh
Q 007945          189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       189 ~~~--l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S~v~r  265 (584)
                      +..  ...+....+.+++..+.+.|.+++.+.|++++.+++++++..+++++++.+.+ +.+++|++||+|||.+|.+++
T Consensus        73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~  152 (295)
T TIGR02032        73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK  152 (295)
T ss_pred             CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence            111  11112233568999999999999999999999999999999888888777654 468999999999999999999


Q ss_pred             HhcCCCCCCceeeEEEEeee--ccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCcc
Q 007945          266 QIRSGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK  342 (584)
Q Consensus       266 ql~~~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~  342 (584)
                      +++........+........  +.+ +.+...++......      ..++.| .+|..++.   ....+...... ...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~P~~~~~---~~v~~~~~~~~-~~~~  221 (295)
T TIGR02032       153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS------PGGYGW-VFPKGDGT---ANVGVGSRSAE-EGED  221 (295)
T ss_pred             hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC------CCceEE-EEeCCCCe---EEEeeeeccCC-CCCC
Confidence            88654333233322111111  100 11222333322111      247888 69987652   22222222211 2347


Q ss_pred             HHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 007945          343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  422 (584)
Q Consensus       343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i  422 (584)
                      +++.++++.+..|.+     .+.++.+...+.+|... ...+...+|++++|||||++||++|+|++++++|+..+|+.|
T Consensus       222 ~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       222 LKKYLKDFLARRPEL-----KDAETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             HHHHHHHHHHhCccc-----ccCcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            888889888877753     23333444445566643 334667899999999999999999999999999998887653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.95  E-value=4.9e-28  Score=253.35  Aligned_cols=322  Identities=20%  Similarity=0.208  Sum_probs=182.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhc-----ccCC-
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATAT-----KFNP-  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~-----~~~~-  181 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||++.+... +...++...++.|.++|+++...-......     .+.. 
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            389999996 57999999999999999999999876432 345688889999999998753110000000     0000 


Q ss_pred             --ce--e--eecC-CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--cEEE
Q 007945          182 --NR--C--GFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILS  249 (584)
Q Consensus       182 --~~--v--~f~~-~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G--~~i~  249 (584)
                        ..  .  .... ......+......+++..|++.|.+.+++.|++++.+++++++..+++++++.+.+   |  ++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~  160 (356)
T PF01494_consen   81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE  160 (356)
T ss_dssp             TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred             CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence              00  0  0000 00011122223568899999999999999999999999999999999988766543   3  3799


Q ss_pred             ccEEEEecCCChHHHhHhcCCCCCCcee---eEEEEeee-ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945          250 SHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD  325 (584)
Q Consensus       250 ArlVIdADG~~S~v~rql~~~~~~~~~~---~~vg~~a~-g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~  325 (584)
                      ||+||+|||.+|.+|++++...+....+   ...+.... .+++......+...   .     ..+.+| .+|..++.  
T Consensus       161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~~--  229 (356)
T PF01494_consen  161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS---P-----PSGGFA-IIPLENGD--  229 (356)
T ss_dssp             ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE---E-----TTEEEE-EEEETTTT--
T ss_pred             EeeeecccCcccchhhhccccccCcccccccccccccccccccccccccccccc---c-----ccccee-EeeccCCc--
Confidence            9999999999999999986442111111   01111110 11110000111110   1     134444 57876521  


Q ss_pred             cEEEEEEcc-CCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945          326 RTTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (584)
Q Consensus       326 ~~~~L~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Plt  404 (584)
                      ...+++... .............+.+++.++...........+..  ...+|.......++..+||+|+|||||.++|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~  307 (356)
T PF01494_consen  230 RSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDE--ISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFS  307 (356)
T ss_dssp             EEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEE--EEEEEEEEEEESSSEETTEEE-GGGTEEE-CCT
T ss_pred             cceEEEeeecccccccccccccccccccccccccccccccccccc--ccccccccccccccccceeEEeccceeeecccc
Confidence            233333221 11111111111112222222111111001111111  112333222233567799999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      |+|++.++.|+..|++.|..+++ +....   +.|+.|+...+.
T Consensus       308 GqG~n~Ai~da~~La~~L~~~~~-g~~~~---~~l~~Y~~~r~~  347 (356)
T PF01494_consen  308 GQGINMAIEDAAALAELLAAALK-GEASE---EALKAYEQERRP  347 (356)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHT-TSSHH---HHHHHHHHHHHH
T ss_pred             cCCCCcccccHHHHHHHHHHHhc-CCcHH---HHHHHHHHHHHH
Confidence            99999999999999999998875 33222   337888875433

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.95  E-value=1.1e-25  Score=255.43  Aligned_cols=388  Identities=15%  Similarity=0.095  Sum_probs=222.4

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh---cccCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP  181 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~  181 (584)
                      ..++||+|||| |+|+++|+.||+ .|++|.||||++.+.. .+.-+|++.+++.|..+|++++..-+....   ..|++
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~  109 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP  109 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence            34799999995 679999999999 5999999999875432 344578999999999999986422111100   01111


Q ss_pred             c-----eee----ecCCCcccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC---eEEEEEc----
Q 007945          182 N-----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA----  243 (584)
Q Consensus       182 ~-----~v~----f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~---gv~V~~~----  243 (584)
                      .     .+.    +........+.. .+.+++..+++.|.+++.+.|+  ++..++++++++++++   .|+|++.    
T Consensus       110 ~~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~  188 (634)
T PRK08294        110 DPADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG  188 (634)
T ss_pred             CCccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence            0     010    000000000111 1457888999999999988775  7788999999987653   4777774    


Q ss_pred             --CC--cEEEccEEEEecCCChHHHhHhcCCC---CCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEE
Q 007945          244 --EG--KILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE  315 (584)
Q Consensus       244 --~G--~~i~ArlVIdADG~~S~v~rql~~~~---~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~  315 (584)
                        +|  ++++||+||+|||.+|.||++++...   .....+.++.... ..+++....-.+.+        +.++.++  
T Consensus       189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~--  258 (634)
T PRK08294        189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL--  258 (634)
T ss_pred             CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--
Confidence              34  58999999999999999999987532   2223222211111 12322111001110        0123333  


Q ss_pred             EccCCCCCCccEEEEEEccCCC---C---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCc----
Q 007945          316 AFPAGSGPLDRTTYMFTYIDPQ---A---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA----  385 (584)
Q Consensus       316 ~fP~~~g~~~~~~~L~~~~~~~---~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~----  385 (584)
                      .+|..++.  ...+.+.+....   .   ...+.+++.+.+.+.++.+.. ....+.+    +..++.......++    
T Consensus       259 ~~P~~~g~--~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~  331 (634)
T PRK08294        259 LIPREGGY--LVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVP  331 (634)
T ss_pred             EEECCCCe--EEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhccccc
Confidence            36765441  122212221111   1   112556666655444432211 1112211    12223221111122    


Q ss_pred             ------cCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhh-----HhhhchhhhhhHHHHHHH
Q 007945          386 ------AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSL-----SLLNPYMPNLSASWLFQR  454 (584)
Q Consensus       386 ------~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l-----~~L~~Ye~~~~~~~~l~k  454 (584)
                            ..+||+|+|||||.++|..|||+|.++.|+..|++.|+..++. ......|     ++....+..+..+..+.+
T Consensus       332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-~a~~~lL~tYe~ERrp~a~~li~~~~~~~~  410 (634)
T PRK08294        332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-RSPPELLHTYSAERQAIAQELIDFDREWST  410 (634)
T ss_pred             ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3589999999999999999999999999999999999988853 2233222     222233333333444555


Q ss_pred             Hhhcccc--CCCChHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHhCCCC
Q 007945          455 AMSAKQQ--SDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQI  515 (584)
Q Consensus       455 ~m~~~~~--~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~  515 (584)
                      .+.....  ...+.+.+++.+......+..++.+|..+.|....+-..+. ..++...+-|..
T Consensus       411 l~~~~~~~~~~~~~~~~~~~~~~~~~~~sG~~~~Y~~s~l~~~~~~~~~~-~~~~~G~r~~~~  472 (634)
T PRK08294        411 MMAAPPKEGGGVDPAELQDYFVKHGRFTAGTATHYAPSLLTGEATHQDLA-TGFPIGKRFHSA  472 (634)
T ss_pred             HhccCCccccccCHHHHHHHHHHhhhhhcccCcccCCccccCCCCchhhc-cCCCCceeCCCC
Confidence            5654432  12345566666555566677899999988887533222222 244555555554

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.95  E-value=6.7e-26  Score=243.73  Aligned_cols=314  Identities=17%  Similarity=0.192  Sum_probs=179.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+||+|||| ++|+++|+.|+++|++|+|+||++.+   ...+...+++..++.|.++|++++..  .. ....+...+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~--~~-~~~~~~~~~~   78 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMD--RE-GLVHDGIELR   78 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHH--hc-CCccCcEEEE
Confidence            589999996 57999999999999999999999853   12233458888999999999875421  10 0111111111


Q ss_pred             ecCC-Ccccccc----cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEccEEEEe
Q 007945          186 FEGK-GEIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA  256 (584)
Q Consensus       186 f~~~-~~l~~~~----~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~V~~~-~G~--~i~ArlVIdA  256 (584)
                      +.+. ..+..+.    .....+.+..+.+.|.+++.+.|++++.+++++++.. +++++.|++. +|+  +++||+||+|
T Consensus        79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA  158 (392)
T PRK08243         79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC  158 (392)
T ss_pred             ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence            1110 0011100    0112345677888888888888999999999999876 5667777773 564  7999999999


Q ss_pred             cCCChHHHhHhcCCCC--CCceeeE--EEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945          257 MGNFSPVVKQIRSGRK--PDGVCLV--VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (584)
Q Consensus       257 DG~~S~v~rql~~~~~--~~~~~~~--vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~  332 (584)
                      ||.+|.+|++++....  +....+.  .+... ..+ ....++++.   .     ..+++.| .+|.+.+   ...+.+.
T Consensus       159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~---~-----~~~~~~~-~~~~~~~---~~~~~~~  224 (392)
T PRK08243        159 DGFHGVSRASIPAGALRTFERVYPFGWLGILA-EAP-PVSDELIYA---N-----HERGFAL-CSMRSPT---RSRYYLQ  224 (392)
T ss_pred             CCCCCchhhhcCcchhhceecccCceEEEEeC-CCC-CCCCceEEe---e-----CCCceEE-EecCCCC---cEEEEEE
Confidence            9999999999864321  1110000  00000 000 000111111   0     1245555 3454432   2222222


Q ss_pred             ccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       333 ~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      +.. ......+..+..+.+.+.++......+....+..  ...+|.......++..+|++|+|||||.++|.+|||+|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a  302 (392)
T PRK08243        225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA  302 (392)
T ss_pred             ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence            221 1111112222233333333321100000001110  1122332222335667999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~  447 (584)
                      ++|+..|++.|.++++.+  ...   .|..|+....
T Consensus       303 i~Da~~La~~L~~~~~~~--~~~---~L~~Ye~~r~  333 (392)
T PRK08243        303 ASDVRYLARALVEFYREG--DTA---LLDAYSATAL  333 (392)
T ss_pred             HHHHHHHHHHHHHHhccC--CHH---HHHHHHHHHH
Confidence            999999999999887643  222   3666766433

>PRK06996 hypothetical protein; Provisional

Probab=99.95  E-value=5.9e-26  Score=244.70  Aligned_cols=312  Identities=13%  Similarity=0.142  Sum_probs=186.1

Q ss_pred             CCCCccEEEEcc-hHHHHHHHHHHhCC----CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCccccc--chhhh
Q 007945          107 AVGTFDVIVCGG-TLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDI--DEATA  176 (584)
Q Consensus       107 ~~~~yDVVIVGG-g~Gl~~Aa~LAr~G----lrVlLIEr~~~~~---~~r~w~Is~~~l~~L~~lGl~~~~el--e~~i~  176 (584)
                      ++..|||+|||| ++|+++|+.|+++|    ++|+|+|+.+.+.   ..+...++..+++.|+.+|+|+....  +....
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~   87 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV   87 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence            344799999996 57999999999987    5799999986543   23567799999999999999875211  11100


Q ss_pred             ccc-CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccE
Q 007945          177 TKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHL  252 (584)
Q Consensus       177 ~~~-~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~Arl  252 (584)
                      ... ....+.|.. .....+ .+++.+++..|++.|.+++.+.|+++..++++++++.++++++|++.++   ++++|++
T Consensus        88 ~~~~~~g~~~~~~-~~~~~~-~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l  165 (398)
T PRK06996         88 SQRGHFGRTLIDR-DDHDVP-ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI  165 (398)
T ss_pred             ecCCCCceEEecc-cccCCC-cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence            000 011222221 111122 2456799999999999999999999999999999988889999988754   5899999


Q ss_pred             EEEecCC-ChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945          253 IIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (584)
Q Consensus       253 VIdADG~-~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~  327 (584)
                      ||+|||. .|.++++++....   +...+.+. .+....+.... .+.+...          +.+  ..+|.+++.....
T Consensus       166 vIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~----------G~~--~~lp~~~~~~~~~  232 (398)
T PRK06996        166 AVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHE----------GPL--ALLPLGGPRQADY  232 (398)
T ss_pred             EEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCC----------CCe--EEeECCCCCCCcE
Confidence            9999996 5777887765322   22333221 11111111111 1111110          111  1345543210001


Q ss_pred             EEEEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945          328 TYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (584)
Q Consensus       328 ~~L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Plt  404 (584)
                      .+++.......   ...+..+..+.+.+.+..    .+..+...... ..+|.+.....++..+||+|+|||||.+||++
T Consensus       233 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~  307 (398)
T PRK06996        233 ALVWCCAPDEAARRAALPDDAFLAELGAAFGT----RMGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPVA  307 (398)
T ss_pred             EEEEECCHHHHHHHHcCCHHHHHHHHHHHhcc----ccCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCccc
Confidence            22211111000   000111222222222211    11222222221 23566544455778899999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      |||+|++++|+..|++.|..   .+. ...   .|..|+..
T Consensus       308 GQG~n~ai~Da~~La~~L~~---~~~-~~~---~L~~Y~~~  341 (398)
T PRK06996        308 GQGLNLGLRDAHTLADALSD---HGA-TPL---ALATFAAR  341 (398)
T ss_pred             chhHHHHHHHHHHHHHHHHh---cCC-cHH---HHHHHHHH
Confidence            99999999999999988854   221 222   26677764

>PRK09126 hypothetical protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=247.26  Aligned_cols=314  Identities=20%  Similarity=0.215  Sum_probs=188.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchh-hhcc---
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TATK---  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~~~---  178 (584)
                      +|||+|||| ++|+++|..|+++|++|+|+||.+.++.      .+...+++..++.|..+|+++...-... ....   
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   82 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV   82 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence            589999996 5799999999999999999999986431      1234577888999999998754211100 0000   


Q ss_pred             cC---CceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945          179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (584)
Q Consensus       179 ~~---~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI  254 (584)
                      ++   ...+.|....  .....+++.+++..+.+.|.+++.+ .|++++.+++|++++.+++++.|++++|++++||+||
T Consensus        83 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI  160 (392)
T PRK09126         83 LNGRSPFALTFDARG--RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV  160 (392)
T ss_pred             EcCCCCceeEeehhh--cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence            01   0112221100  0012234557888899998888865 5899999999999988888888988889999999999


Q ss_pred             EecCCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       255 dADG~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      +|||.+|.++++++......   ..+. +.......++......++     .     ..+++| .||..++   ...+.+
T Consensus       161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~-----~~~~~~-~~P~~~~---~~~~~~  225 (392)
T PRK09126        161 AADSRFSATRRQLGIGADMHDFGRTML-VCRMRHELPHHHTAWEWF-----G-----YGQTLA-LLPLNGH---LSSLVL  225 (392)
T ss_pred             EeCCCCchhhHhcCCCccccccCCeEE-EEEEeccCCCCCEEEEEe-----c-----CCCCeE-EeECCCC---CEEEEE
Confidence            99999999999986543221   1111 111111011111100011     0     134556 5888755   333333


Q ss_pred             EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      ........   ..+.++..+++.+.++..    +........ ...+|.......++..+|++|+|||||.++|++|+|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~  300 (392)
T PRK09126        226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF  300 (392)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence            33211000   011122222211222111    111111111 1223443222335678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhhhh
Q 007945          409 GSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~~~  447 (584)
                      +++++|+..|++.|..+++.+ +.+  .-+.|..|+...+
T Consensus       301 ~~ai~da~~la~~L~~~~~~~~~~~--~~~~l~~Y~~~r~  338 (392)
T PRK09126        301 NLGLKGQDILARLILAAARRGQDIG--AASLLERYERKHR  338 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHH
Confidence            999999999999999988643 221  1223667776543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.95  E-value=7.3e-26  Score=242.36  Aligned_cols=310  Identities=20%  Similarity=0.172  Sum_probs=187.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhhhcccC-C
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN-P  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~-~  181 (584)
                      .+||+|||| ++|+++|+.|++.|++|+|+||++.+..      .+...+++..++.|..+|++++..  .   ..+. .
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~--~---~~~~~~   79 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALD--A---ARLAPV   79 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhh--h---hcCCcc
Confidence            689999996 5799999999999999999999987542      122457888999999999875421  0   1110 0


Q ss_pred             ceeeecCC--Ccccc------cccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945          182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (584)
Q Consensus       182 ~~v~f~~~--~~l~~------~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl  252 (584)
                      ..+.+.+.  ..+..      .....+.+++..+++.|.+++.+.| ++++ +++++++..+++++.|++.+|++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~  158 (388)
T PRK07608         80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL  158 (388)
T ss_pred             eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence            11111110  00110      0112356889999999999999888 7888 9999999888888999988888999999


Q ss_pred             EEEecCCChHHHhHhcCCCCC---CceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945          253 IIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (584)
Q Consensus       253 VIdADG~~S~v~rql~~~~~~---~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~  329 (584)
                      ||+|||.+|.+++.++.....   ...+.+.... ...........++     .     ..+++| .+|.+++   ....
T Consensus       159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~-----~~~~~~-~~p~~~~---~~~~  223 (388)
T PRK07608        159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFK-AERPHRGTAYQWF-----R-----DDGILA-LLPLPDG---HVSM  223 (388)
T ss_pred             EEEeCCCCchHHHhcCCCccccccCCEEEEEEEE-ecCCCCCEEEEEe-----c-----CCCCEE-EeECCCC---CeEE
Confidence            999999999999988654321   1222111000 0000000000011     1     134555 5788765   2222


Q ss_pred             EEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       330 L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      .+.......   ...+.+++.+.+....+.    .+..+....... .+|.......++..+|++++|||||.++|++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~Gq  298 (388)
T PRK07608        224 VWSARTAHADELLALSPEALAARVERASGG----RLGRLECVTPAA-GFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQ  298 (388)
T ss_pred             EEECCHHHHHHHHCCCHHHHHHHHHHHHHH----hcCCceecCCcc-eeecchhhhhhhhcCceEEEeccccccCCcccc
Confidence            222211000   001112222222111111    011222111221 245443333456789999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~  447 (584)
                      |++++++|+..|++.|..+...++..  ..+.++.|+...+
T Consensus       299 G~n~ai~da~~La~~L~~~~~~~~~~--~~~~l~~Ye~~R~  337 (388)
T PRK07608        299 GMNLGLRDVAALADVLAGREPFRDLG--DLRLLRRYERARR  337 (388)
T ss_pred             ccchhHHHHHHHHHHHHHhhccCCCc--cHHHHHHHHHHHH
Confidence            99999999999999997764322221  2234778887543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.95  E-value=1.4e-25  Score=250.87  Aligned_cols=308  Identities=17%  Similarity=0.142  Sum_probs=183.7

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .++||+|||| ++|+++|+.|+++|++|+||||++.+. ..+.+.++.+.++.|.++|++++..  .. ...+.  .+.|
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~--~~-~~~~~--~~~~   83 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVL--PH-TTPNH--GMRF   83 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHH--hh-cccCC--ceEE
Confidence            3699999995 579999999999999999999998654 3466789999999999999875421  10 00011  1111


Q ss_pred             c--CCCcc-ccc--------ccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEc
Q 007945          187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS  250 (584)
Q Consensus       187 ~--~~~~l-~~~--------~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~A  250 (584)
                      .  .+..+ ..+        ....+.+.+..+++.|.+.+.+. |++++.++++++++.++++++|+++  +|  ++++|
T Consensus        84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a  163 (538)
T PRK06183         84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA  163 (538)
T ss_pred             EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence            1  00000 000        11123477888999999998875 8899999999999999999998886  45  47999


Q ss_pred             cEEEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCcc
Q 007945          251 HLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (584)
Q Consensus       251 rlVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~  326 (584)
                      |+||+|||.+|.+|++++....   +...+.++.......+ .......++     .+    ++.++  .+|.+++   .
T Consensus       164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~--~~p~~~~---~  229 (538)
T PRK06183        164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC-----DP----ARPYT--SVRLPHG---R  229 (538)
T ss_pred             EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE-----CC----CCCEE--EEEcCCC---e
Confidence            9999999999999999865321   1111111110000000 000001111     11    12232  3565543   2


Q ss_pred             EEEEEEccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945          327 TTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (584)
Q Consensus       327 ~~~L~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG  405 (584)
                      ..+.+.... .......-.+.+.++++...    ......++...  ..+........++..+||+|+|||||.++|+.|
T Consensus       230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G  303 (538)
T PRK06183        230 RRWEFMLLPGETEEQLASPENVWRLLAPWG----PTPDDAELIRH--AVYTFHARVADRWRSGRVLLAGDAAHLMPPFAG  303 (538)
T ss_pred             EEEEEEeCCCCChhhcCCHHHHHHHHHhhC----CCCcceEEEEE--EeeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence            223333221 11111111222333333221    01112222221  111111112335678999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       406 gG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ||+|++++|+..|++.|+..++. ......   |..|+..
T Consensus       304 QG~n~gi~DA~~La~kLa~~~~g-~~~~~~---L~~Ye~e  339 (538)
T PRK06183        304 QGMNSGIRDAANLAWKLAAVLRG-RAGDAL---LDTYEQE  339 (538)
T ss_pred             cchhhhHHHHHHHHHHHHHHHcC-CCcHHH---HHHHHHH
Confidence            99999999999999999876643 223233   5566654

>PRK06184 hypothetical protein; Provisional

Probab=99.95  E-value=9e-26  Score=250.41  Aligned_cols=298  Identities=15%  Similarity=0.117  Sum_probs=179.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh---cccCC-ce
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-NR  183 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~-~~  183 (584)
                      ++||+|||| ++|+++|+.|+++|++|+||||++.+.. .+.-.|++..++.|..+|++++..-.....   ..|.. ..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            589999995 6799999999999999999999986642 355678999999999999875421000000   01111 10


Q ss_pred             e---eecCC--CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEccEEEE
Q 007945          184 C---GFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID  255 (584)
Q Consensus       184 v---~f~~~--~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~---~~G~~i~ArlVId  255 (584)
                      +   .+...  .....+....+.+++..+++.|.+++.+.|++++.++++++++.+++++++++   .++++++||+||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg  162 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG  162 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence            1   00000  00011112234578889999999999999999999999999999888888877   4567899999999


Q ss_pred             ecCCChHHHhHhcCCCC---CCc-eeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          256 AMGNFSPVVKQIRSGRK---PDG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       256 ADG~~S~v~rql~~~~~---~~~-~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      |||.+|.+|++++....   ... .+.+........+ ......+..     +    ..+.+ ..+|..++.  ...+.+
T Consensus       163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~----~~~~~-~~~p~~~~~--~~~~~~  229 (502)
T PRK06184        163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLD-RDAWHQWPD-----G----DMGMI-ALCPLPGTD--LFQIQA  229 (502)
T ss_pred             CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCC-CcceEEccC-----C----CCcEE-EEEEccCCC--eEEEEE
Confidence            99999999999875432   111 2211111011111 011111110     0    11222 245655331  222222


Q ss_pred             EccCCCCCCc---cHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQAGSP---KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~~~~---~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      ...+......   .+.+++.+++..    ....+..+.+    ...++.......++..+||+|+|||||.++|..|||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~  301 (502)
T PRK06184        230 PLPPGGEPDLSADGLTALLAERTGR----TDIRLHSVTW----ASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGL  301 (502)
T ss_pred             EcCCCccCCCCHHHHHHHHHHhcCC----CCcceeeeee----eeccccceeEhhhhcCCcEEEeccccccCCCcccccc
Confidence            2221111111   233333322211    1111111111    1122222122335678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhC
Q 007945          409 GSLTRHLGRLSTGVYEAVRG  428 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~  428 (584)
                      |++++|+..|++.|+.+++.
T Consensus       302 n~gi~DA~~LawkLa~vl~g  321 (502)
T PRK06184        302 NTSVQDAYNLGWKLAAVLAG  321 (502)
T ss_pred             cchHHHHHHHHHHHHHHHcC
Confidence            99999999999999888764

>PRK07045 putative monooxygenase; Reviewed

Probab=99.95  E-value=1.5e-25  Score=240.33  Aligned_cols=317  Identities=14%  Similarity=0.138  Sum_probs=185.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccch-hhhc---ccCCce
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDE-ATAT---KFNPNR  183 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~-~i~~---~~~~~~  183 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+||++.+... +...+++..++.|..+|+++...-.. ....   .+....
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   84 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE   84 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence            689999996 57999999999999999999999876432 33347888889999999875421000 0000   011111


Q ss_pred             -eeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCC
Q 007945          184 -CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       184 -v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~  259 (584)
                       +....-... .+....+.+.+..|.+.|.+++.+ .|++++.+++++++..+++++  .|++++|++++|++||+|||.
T Consensus        85 ~~~~~~~~~~-~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~  163 (388)
T PRK07045         85 LIASLDYRSA-SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA  163 (388)
T ss_pred             EEEEecCCcc-ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence             100000000 001112347888999999999865 478999999999998877663  577888899999999999999


Q ss_pred             ChHHHhHh-cCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccC
Q 007945          260 FSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID  335 (584)
Q Consensus       260 ~S~v~rql-~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~  335 (584)
                      +|.+|+++ +...   ++...+. ++.....-.......+++.     +    ..+++| .||.+++   ...+.+.+..
T Consensus       164 ~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~----~~~~~~-~~p~~~~---~~~~~~~~~~  229 (388)
T PRK07045        164 RSMIRDDVLRMPAERVPYATPMA-FGTIALTDSVRECNRLYVD-----S----NQGLAY-FYPIGDQ---ATRLVVSFPA  229 (388)
T ss_pred             ChHHHHHhhCCCcccCCCCccee-EEEEeccCCccccceEEEc-----C----CCceEE-EEEcCCC---cEEEEEEecc
Confidence            99999974 3221   1222221 1221110000011112211     1    245667 5887654   2222222221


Q ss_pred             CCCC----CccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945          336 PQAG----SPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (584)
Q Consensus       336 ~~~~----~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~  410 (584)
                      ....    ....+++.+.+.+.+ +..... +..+.. ...+..+|+......++..+|++|+|||||.++|++|+|+|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~  307 (388)
T PRK07045        230 DEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL  307 (388)
T ss_pred             ccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCccccHHH
Confidence            1110    011222222222222 111110 111110 011223454432334667899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       411 ~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~  446 (584)
                      +++|+..|++.|..++..+. +  .-+.|+.|+..-
T Consensus       308 ai~Da~~La~~L~~~~~~~~-~--~~~~L~~Ye~~R  340 (388)
T PRK07045        308 AIEDAGELGACLDLHLSGQI-A--LADALERFERIR  340 (388)
T ss_pred             HHHHHHHHHHHHHhhcCCch-h--HHHHHHHHHHHh
Confidence            99999999999988764421 1  122367777643

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.95  E-value=5e-26  Score=243.12  Aligned_cols=311  Identities=18%  Similarity=0.192  Sum_probs=186.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCCCCCCc-----ccccCCHHHHHHHHHcCCCcccccchhhhcc--c-CC
Q 007945          112 DVIVCGG-TLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATK--F-NP  181 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~-----r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~--~-~~  181 (584)
                      ||+|||| ++|+++|..|+++| ++|+|+||.+.+...     +...+++..++.|.++|+++...-.......  + +.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            8999996 57999999999999 999999999876532     3456888889999999987542110000000  0 00


Q ss_pred             ---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       182 ---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                         ..+.+.. ..... ...++.+++..|.+.|.+++.+. |++++.+++|+++..++++++|++.+|++++||+||+||
T Consensus        81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence               0111110 00111 11245689999999999999884 899999999999998888999998888899999999999


Q ss_pred             CCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945          258 GNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (584)
Q Consensus       258 G~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~  334 (584)
                      |.+|.++++++......   ..+... .+....+.......++     .     ..+.++ .+|..++.  ...+.+...
T Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-----~~g~~~-~~p~~~~~--~~~~~~~~~  224 (382)
T TIGR01984       159 GANSKVRELLSIPTEEHDYNQTALIA-NIRHEQPHQGCAFERF-----T-----PHGPLA-LLPLKDNY--RSSLVWCLP  224 (382)
T ss_pred             CCChHHHHHcCCCCcccccCCEEEEE-EEEecCCCCCEEEEee-----C-----CCCCeE-ECcCCCCC--CEEEEEECC
Confidence            99999999987543211   222111 1111111100000000     0     012233 47876541  222222221


Q ss_pred             CCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       335 ~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      .....   ..+.++..+++.+.++..    +..+..... ...+|.......++..+||+|+|||||.++|++|+|++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a  299 (382)
T TIGR01984       225 SKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGE-RKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG  299 (382)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-ccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence            10000   011222233332222110    111111111 1234444323335677999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~  447 (584)
                      ++|+..|++.|..++. +....   +.++.|+...+
T Consensus       300 l~Da~~La~~L~~~~~-~~~~~---~~l~~Y~~~r~  331 (382)
T TIGR01984       300 LRDVETLAEVLIDARI-DLGTY---ALLQEYLRRRQ  331 (382)
T ss_pred             HHHHHHHHHHHHHhcc-CccCH---HHHHHHHHHHH
Confidence            9999999999987652 11112   23677887543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.95  E-value=6.1e-25  Score=233.04  Aligned_cols=312  Identities=13%  Similarity=0.120  Sum_probs=183.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC----C-cccccCCHHHHHHHHHcCCCcccc-cchhhhcccCCc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN  182 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~----~-~r~w~Is~~~l~~L~~lGl~~~~e-le~~i~~~~~~~  182 (584)
                      .|||+|||| ++|+++|..|+++ ++|+||||++...    . +....++++.++.|..+|++.... +..  ...+...
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~--~~~~~~~   77 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN--PQIFAVK   77 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeec--cccceee
Confidence            389999995 6799999999999 9999999997532    1 133468999999999999864311 111  0011111


Q ss_pred             eeeecCCCccccccc-ccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecC
Q 007945          183 RCGFEGKGEIWVEDI-LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG  258 (584)
Q Consensus       183 ~v~f~~~~~l~~~~~-l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG  258 (584)
                      .+.+..  .+..... ..+.+++..|++.|.+. .+.|++++.++.++++..+++++.|++ .+|+  +++|++||+|||
T Consensus        78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG  154 (351)
T PRK11445         78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG  154 (351)
T ss_pred             Eecccc--cchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence            121111  1100011 12358999999999885 467899999999999998888888876 4564  799999999999


Q ss_pred             CChHHHhHhcCCCCCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC
Q 007945          259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA  338 (584)
Q Consensus       259 ~~S~v~rql~~~~~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~  338 (584)
                      .+|.++++++...+..... .+..........+...+++... .      ..+|.| .||..+.    ..+.+.+..  .
T Consensus       155 ~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~~--~  219 (351)
T PRK11445        155 ANSMVRRHLYPDHQIRKYV-AIQQWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYPM--K  219 (351)
T ss_pred             CCcHHhHHhcCCCchhhEE-EEEEEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEecccccc--c
Confidence            9999999886432211110 1111110000111111222211 1      247899 6898643    222122211  1


Q ss_pred             CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCC-CccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHH
Q 007945          339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR  417 (584)
Q Consensus       339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~  417 (584)
                      ......+.+.+++..+..    ..++.  .+...+.++....... ....+|+++||||||++||++|+|++.+++++..
T Consensus       220 ~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~  293 (351)
T PRK11445        220 DGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARI  293 (351)
T ss_pred             chHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHH
Confidence            111111122223322211    01111  1112222222111111 2235899999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH--HHHHHhh
Q 007945          418 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW--LFQRAMS  457 (584)
Q Consensus       418 La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~--~l~k~m~  457 (584)
                      |++.|.++.+      ..   ++.|++.++.--  +|.|.+.
T Consensus       294 la~~l~~~~~------~~---~~~y~~~~~~~~~~~~~~~~~  326 (351)
T PRK11445        294 LSEVLNKQPE------KL---NTAYWRKTRKLRLKLFGKILK  326 (351)
T ss_pred             HHHHHHhccc------ch---HHHHHHHHHHHHHHHHHHHhc
Confidence            9998876542      22   667887665542  4555553

>PTZ00367 squalene epoxidase; Provisional

Probab=99.94  E-value=1.9e-24  Score=241.38  Aligned_cols=298  Identities=15%  Similarity=0.172  Sum_probs=167.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~--~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +||||||||| +|+++|..|+++|++|+|+||++...  ......+++..++.|+++|+++..+  .. ........+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~--~i-~~~~~~~~v~~  109 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAE--GI-GMPCFGYVVFD  109 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHh--hc-CcceeeeEEEE
Confidence            6999999965 69999999999999999999986322  2223358899999999999986421  11 11111111111


Q ss_pred             cCCCccccc---ccccceeCHHHHHHHHHHHH---HhCCCEEEeCceEEEEEEeCC-------eEEEEEcC---------
Q 007945          187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE---------  244 (584)
Q Consensus       187 ~~~~~l~~~---~~l~~~vd~~~L~~~L~~~a---~~~G~~i~~~t~v~~v~~~~~-------gv~V~~~~---------  244 (584)
                      ..+..+..+   ...+..+.+..+.+.|.+++   ...++++++ ++++++..+++       +++++..+         
T Consensus       110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f  188 (567)
T PTZ00367        110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF  188 (567)
T ss_pred             CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence            111111111   11123456777888888877   334778865 47887755433       35555444         


Q ss_pred             --------------CcEEEccEEEEecCCChHHHhHhcCCCC-CCceeeEEEEeeecc--CCCcceeEEccCCcccccCC
Q 007945          245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PDGVCLVVGSCARGF--KDNSTSDVIYSSSSVKKVGD  307 (584)
Q Consensus       245 --------------G~~i~ArlVIdADG~~S~v~rql~~~~~-~~~~~~~vg~~a~g~--~~~~~~di~~~~~~~~~~~~  307 (584)
                                    +++++|++||+|||.+|.+|++++...+ .+......+......  +....+.++++         
T Consensus       189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g---------  259 (567)
T PTZ00367        189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLG---------  259 (567)
T ss_pred             ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEc---------
Confidence                          5689999999999999999999864322 111111122222211  12222333321         


Q ss_pred             CCceEEEEEccCCCCCCccEEEEEEccCC-CCCCccHHHHHHHHHh-hCcc-cccccCCceeEEEEEeeeeccccCCCCC
Q 007945          308 SEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEELLERYWD-LMPE-YQGVTLDNLEIQRVIYGIFPTYRDSPLP  384 (584)
Q Consensus       308 ~~~~~~W~~fP~~~g~~~~~~~L~~~~~~-~~~~~~l~~l~~~~~~-~lp~-~~~~~l~~~~~~~~~~g~~P~~~~~~~~  384 (584)
                       ..+.+| .||.+++   ....+..+... .+......+.+.+... .+|+ ++..-...+.-... .-..|.+...+.+
T Consensus       260 -~~gpi~-~yPl~~~---~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~-l~~~p~~~~p~~~  333 (567)
T PTZ00367        260 -KTGPIL-SYRLDDN---ELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKR-IRSMPNARYPPAF  333 (567)
T ss_pred             -CCceEE-EEEcCCC---eEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCC-eEEeeHhhCCCcc
Confidence             134566 5898765   22223333221 1110112222221111 1111 11000000000000 1123444323345


Q ss_pred             ccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHH
Q 007945          385 AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  426 (584)
Q Consensus       385 ~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL  426 (584)
                      +..+|++|+|||||++||++|||++++++|+..|++.|..+.
T Consensus       334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~  375 (567)
T PTZ00367        334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK  375 (567)
T ss_pred             CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence            567899999999999999999999999999999999987643

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.93  E-value=4.1e-24  Score=239.58  Aligned_cols=314  Identities=15%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhh---ccc-CCc
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA---TKF-NPN  182 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~-~~~  182 (584)
                      ..+||+|||| ++|+++|+.|+++|++|+||||++... ..+.+.++...++.|.++|++++..-.....   ..+ ...
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~  101 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE  101 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence            4699999995 679999999999999999999998543 3456789999999999999875421000000   001 000


Q ss_pred             e-eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CCc-EEEccEEEEec
Q 007945          183 R-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIIDAM  257 (584)
Q Consensus       183 ~-v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~--~G~-~i~ArlVIdAD  257 (584)
                      . ..|.............+.+.+..|++.|.+++.+. +++++.+++++++..+++++++++.  +|. +++|++||+||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD  181 (547)
T PRK08132        102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD  181 (547)
T ss_pred             eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence            0 11110000000011123467888999999999876 6799999999999988888877664  344 79999999999


Q ss_pred             CCChHHHhHhcCCCC---CCceeeEEEEeee-ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEc
Q 007945          258 GNFSPVVKQIRSGRK---PDGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (584)
Q Consensus       258 G~~S~v~rql~~~~~---~~~~~~~vg~~a~-g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~  333 (584)
                      |.+|.+|++++....   +...+.++..... .++  .....++. .+..     ...++| .+|.+++   ...+-+..
T Consensus       182 G~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~--~~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~~~~  249 (547)
T PRK08132        182 GARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP--TERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRIDFQL  249 (547)
T ss_pred             CCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC--CeeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEEEec
Confidence            999999999875322   1121211111110 111  01111111 1111     123454 3555433   11111211


Q ss_pred             cC-CCCC-CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          334 ID-PQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       334 ~~-~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      .. .... ..+.++..+...+.++.     ....++..  ...++.......++..+||+|+|||||.++|..|||+|++
T Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~g  322 (547)
T PRK08132        250 GWDADPEAEKKPENVIPRVRALLGE-----DVPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSG  322 (547)
T ss_pred             CCCCCchhhcCHHHHHHHHHHHcCC-----CCCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCcccccccch
Confidence            11 1111 11222222222222221     01122111  1122332223346778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ++|+..|++.|+..++. ..+..   .|..|+..
T Consensus       323 i~DA~~LawkLa~vl~g-~~~~~---lL~~Ye~e  352 (547)
T PRK08132        323 IQDADNLAWKLALVLRG-RAPDS---LLDSYASE  352 (547)
T ss_pred             HHHHHHHHHHHHHHHcC-CCcHH---HHHHHHHH
Confidence            99999999999988754 33333   35666653

>PLN02985 squalene monooxygenase

Probab=99.93  E-value=2.5e-23  Score=230.90  Aligned_cols=298  Identities=16%  Similarity=0.182  Sum_probs=163.7

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce--
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNR--  183 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~--  183 (584)
                      +.+|||+||||| +|+++|+.|+++|++|+|+||.+... ......+++..++.|.++|+++..  +......+....  
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l--~~~~~~~~~~~~v~  118 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCL--EGIDAQKATGMAVY  118 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchh--hhccCcccccEEEE
Confidence            447999999965 79999999999999999999986422 112334777888999999998642  211111111111  


Q ss_pred             -------eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe---EEEEEcCCc--EEEc
Q 007945          184 -------CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSS  250 (584)
Q Consensus       184 -------v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~g---v~V~~~~G~--~i~A  250 (584)
                             +.|.....-......++.+++..|.+.|.+++.+. ++++..+ +++++..+++.   +++...+|+  +++|
T Consensus       119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A  197 (514)
T PLN02985        119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA  197 (514)
T ss_pred             ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence                   11110000000012235688999999999999877 4677654 57777655543   333334564  4789


Q ss_pred             cEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeecc--CCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945          251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGF--KDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (584)
Q Consensus       251 rlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~--~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~  328 (584)
                      ++||+|||.+|.+|++++...+...... ++......  ++.....++++          ..+.+. .+|.++++   ..
T Consensus       198 dLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~~---~~  262 (514)
T PLN02985        198 PLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISSTD---VR  262 (514)
T ss_pred             CEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCCe---EE
Confidence            9999999999999999865332211111 11111111  11112222221          112333 46766542   22


Q ss_pred             EEEEccCCC-CC--CccHHHHHHHHH-hhCcc-cccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCC
Q 007945          329 YMFTYIDPQ-AG--SPKLEELLERYW-DLMPE-YQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV  403 (584)
Q Consensus       329 ~L~~~~~~~-~~--~~~l~~l~~~~~-~~lp~-~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Pl  403 (584)
                      .+....... +.  ...+.+.+.+.. ..+|+ ++..-....+-. ..+-..|.+.........+|++|+|||||++||+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~  341 (514)
T PLN02985        263 CVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPA  341 (514)
T ss_pred             EEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcccccccccCCCCEEEEecccccCCCC
Confidence            222222111 10  012222222211 11111 111100000000 0011234332222233468999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHH
Q 007945          404 SFGGFGSLTRHLGRLSTGVYE  424 (584)
Q Consensus       404 tGgG~g~~lr~~~~La~~i~~  424 (584)
                      +|||+++++.|+..|++.|..
T Consensus       342 ~GQGmn~AleDA~vLa~lL~~  362 (514)
T PLN02985        342 IASGMMVLLSDILILRRLLQP  362 (514)
T ss_pred             ccccHhHHHHHHHHHHHHhhh
Confidence            999999999999999988865

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.93  E-value=1.2e-23  Score=225.68  Aligned_cols=316  Identities=16%  Similarity=0.165  Sum_probs=185.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC---CCeEEEEcCCCCCC------CcccccCCHHHHHHHHHcCCCcccccchhhhcc-
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK---GLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEATATK-  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~---GlrVlLIEr~~~~~------~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~-  178 (584)
                      .|||+|||| ++|+++|+.|+++   |++|+|+||.....      ..+...++...++.|..+|++++..-....... 
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   82 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI   82 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence            689999996 5799999999998   99999999963221      123456888889999999998642211100000 


Q ss_pred             -c-CCc---eeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945          179 -F-NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (584)
Q Consensus       179 -~-~~~---~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl  252 (584)
                       + +..   .+.+.. .....+ ..++.+++..|.+.|.+.+.+. |++++.+++++++..+++++.|++++|.+++|++
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (395)
T PRK05732         83 HVSDRGHAGFVRLDA-EDYGVP-ALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL  160 (395)
T ss_pred             EEecCCCCceEEeeh-hhcCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence             0 000   011110 011111 1235678888999999988775 7899999999999888888999988888999999


Q ss_pred             EEEecCCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945          253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (584)
Q Consensus       253 VIdADG~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~  329 (584)
                      ||+|||.+|.++++++......   ..+. ...+..  ........+..   ..+     .+.++ .+|.+++.   ..+
T Consensus       161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~---~~~-----~g~~~-~~p~~~g~---~~~  225 (395)
T PRK05732        161 LVAADGSHSALREALGIDWQQHPYEQVAV-IANVTT--SEAHQGRAFER---FTE-----HGPLA-LLPMSDGR---CSL  225 (395)
T ss_pred             EEEecCCChhhHHhhCCCccceecCCEEE-EEEEEe--cCCCCCEEEEe---ecC-----CCCEE-EeECCCCC---eEE
Confidence            9999999999999886543211   1121 111110  00001111110   001     12344 47776652   222


Q ss_pred             EEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       330 L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      .+.......   ...+..+..+.+.+.++. .   +..+..... ...+|+....+.++..+|++|+|||||.++|++|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq  300 (395)
T PRK05732        226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ  300 (395)
T ss_pred             EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence            222111000   001222233333222211 0   111110000 11234332233456789999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      |++.+++|+..|++.|+.+++.+. +...-+.++.|+.+.+.
T Consensus       301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~~~R~~  341 (395)
T PRK05732        301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQQRRQQ  341 (395)
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHH
Confidence            999999999999999998876432 11111336778875543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.93  E-value=1e-23  Score=225.29  Aligned_cols=340  Identities=15%  Similarity=0.174  Sum_probs=200.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ||+||||| +|+++|+.|+++  |++|+|+|+.+..+..+.|..+..++....      ...++.++.+.|+...+.+..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~------~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQ------HAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhh------hhhhhhhheEeCCCCEEECcc
Confidence            89999965 699999999987  999999999987666677776654332211      112455667778776666543


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhHhc
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~  268 (584)
                      ... .....+ +.|++..|.+.|.+++.. +  ++.+++|+++  +++++++  ++|++++|++||||+|.+|+-.... 
T Consensus        75 ~~~-~l~~~Y-~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~-  144 (370)
T TIGR01789        75 YRR-KLKTAY-RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKG-  144 (370)
T ss_pred             hhh-hcCCCc-eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccc-
Confidence            211 111222 468889999999877643 3  7778999987  5566555  6889999999999999998522211 


Q ss_pred             CCCCCCceeeEEEEeee---ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC----CCc
Q 007945          269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP  341 (584)
Q Consensus       269 ~~~~~~~~~~~vg~~a~---g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~----~~~  341 (584)
                       +     .....|...+   .++ .+.. ++.+...-+   .++..++. +-|.+++    ..+ +.+....+    ...
T Consensus       145 -~-----~Q~f~G~~~r~~~p~~-~~~~-~lMD~~~~q---~~g~~F~Y-~lP~~~~----~~l-vE~T~~s~~~~l~~~  207 (370)
T TIGR01789       145 -G-----FQVFLGREMRLQEPHG-LENP-IIMDATVDQ---LAGYRFVY-VLPLGSH----DLL-IEDTYYADDPLLDRN  207 (370)
T ss_pred             -e-----eeEEEEEEEEEcCCCC-CCcc-EEEeeeccC---CCCceEEE-ECcCCCC----eEE-EEEEeccCCCCCCHH
Confidence             1     1111122111   111 1111 111111101   01223332 4566543    122 11111011    112


Q ss_pred             cHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC--C-CCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHH
Q 007945          342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS--P-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  418 (584)
Q Consensus       342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~--~-~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~L  418 (584)
                      .+++.+.+|.+..    +  ....++.+.+.|.+|+....  + .....++++++|||||++||.||||++.+++++..|
T Consensus       208 ~l~~~l~~~~~~~----g--~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l  281 (370)
T TIGR01789       208 ALSQRIDQYARAN----G--WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL  281 (370)
T ss_pred             HHHHHHHHHHHHh----C--CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence            4445555555432    2  23344556667899984421  1 112356799999999999999999999999987777


Q ss_pred             HHHHHHHHhCC-CCChhhhHhhhchhhh-----hhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCCccccccc
Q 007945          419 STGVYEAVRGD-FVDSYSLSLLNPYMPN-----LSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFL  492 (584)
Q Consensus       419 a~~i~~AL~~~-~ls~~~l~~L~~Ye~~-----~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl  492 (584)
                      ++.+.  + ++ .+.    +.+..|...     -.-.++...+|...     .    ++....||..|++||++.+..||
T Consensus       282 a~~~~--~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----~----~~~~~~~f~~~f~l~~~~~~rFl  345 (370)
T TIGR01789       282 AAQPD--L-SSEQLA----AFIDSRARRHWSKTGYYRLLNRMLFFAA-----K----PEKRVRVFQRFYGLREGLIERFY  345 (370)
T ss_pred             HhccC--c-Cccchh----hhhhHHHHHHHHHhHHHHHHHHHHhccC-----C----chhHHHHHHHHhCCCHHHHHHHH
Confidence            75442  0 21 111    012223322     11122233333111     1    23668888999999999999999


Q ss_pred             ccccchhHHHHHHH
Q 007945          493 QDVIKFGPLAKTLG  506 (584)
Q Consensus       493 ~d~~~~~~l~~~~~  506 (584)
                      .++.++.+..++|.
T Consensus       346 ~~~~~~~~~~~i~~  359 (370)
T TIGR01789       346 AARSNTFDKLRVLW  359 (370)
T ss_pred             hcCCCHHHHHHHHc
Confidence            99999999888774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.93  E-value=1e-23  Score=226.82  Aligned_cols=298  Identities=15%  Similarity=0.150  Sum_probs=163.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~---~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+||+|||| ++|+++|+.|+++|++|+||||++.+.   ..+...+++..++.|.++|++++..  .. ........+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~--~~-~~~~~~~~~~   78 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMD--RE-GLVHEGTEIA   78 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHH--hc-CceecceEEe
Confidence            489999996 569999999999999999999998532   2233458888999999999985421  10 0011111111


Q ss_pred             ecCC-Cccccccc---cc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEccEEEEe
Q 007945          186 FEGK-GEIWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA  256 (584)
Q Consensus       186 f~~~-~~l~~~~~---l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~V~~~-~G~--~i~ArlVIdA  256 (584)
                      ..+. ..+..+..   .. ....+..+.+.|.+++.+.|+.++.+++++.+.. +++.+.|++. +|+  +++||+||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGA  158 (390)
T TIGR02360        79 FDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGC  158 (390)
T ss_pred             eCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEEC
Confidence            1000 00000000   01 1134567888899988888999999988877754 5566777775 665  7999999999


Q ss_pred             cCCChHHHhHhcCCCC--CCceee--EEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945          257 MGNFSPVVKQIRSGRK--PDGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (584)
Q Consensus       257 DG~~S~v~rql~~~~~--~~~~~~--~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~  332 (584)
                      ||.+|.+|+++.....  +.+...  ..+.... .+ .....+++.        +.+..+.+  +|..++.  ...+.+.
T Consensus       159 DG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~~~  224 (390)
T TIGR02360       159 DGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYYVQ  224 (390)
T ss_pred             CCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEEEE
Confidence            9999999999753221  111000  0000000 00 000001100        00123332  2332211  1112112


Q ss_pred             ccCCCC-CCccHHHHHHHHHhhCc-ccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945          333 YIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (584)
Q Consensus       333 ~~~~~~-~~~~l~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~  410 (584)
                      +..... .........+.+.+.++ ...........+   .....|.......++..+|++|+|||||.++|..|||+|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~  301 (390)
T TIGR02360       225 VPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSI---EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNL  301 (390)
T ss_pred             cCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCcc---ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhH
Confidence            211110 00011111122212221 111110000000   0122344222334567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 007945          411 LTRHLGRLSTGVYEAVR  427 (584)
Q Consensus       411 ~lr~~~~La~~i~~AL~  427 (584)
                      +++|+..|++.|..+..
T Consensus       302 aieDA~~La~~L~~~~~  318 (390)
T TIGR02360       302 AASDVHYLYEALLEHYQ  318 (390)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999877654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07588 hypothetical protein; Provisional

Probab=99.93  E-value=8.3e-24  Score=227.18  Aligned_cols=311  Identities=14%  Similarity=0.096  Sum_probs=176.5

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~-  188 (584)
                      ||+|||| ++|+++|..|+++|++|+|+||.+.... ...+.++...++.|.++|++++..  .   ..+....+.+.. 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~--~---~~~~~~~~~~~~~   76 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR--E---AGYQIEHVRSVDP   76 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHH--h---ccCCccceEEEcC
Confidence            8999996 5699999999999999999999976432 234667778889999999875321  1   111111111111 


Q ss_pred             -CCc---cc---ccccc---cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          189 -KGE---IW---VEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       189 -~~~---l~---~~~~l---~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                       +..   +.   .....   .+.+.+..|.+.|.+++. .|++++.+++|++++.++++++|++++|++++|++||+|||
T Consensus        77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588         77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence             000   00   00011   135888899999887654 47899999999999998889999999999999999999999


Q ss_pred             CChHHHhHhcCCCCC-Cc-eeeEEEEe-eeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945          259 NFSPVVKQIRSGRKP-DG-VCLVVGSC-ARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (584)
Q Consensus       259 ~~S~v~rql~~~~~~-~~-~~~~vg~~-a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~  334 (584)
                      .+|.+|+++...... .. ....+..+ ...+. .....-..+.    .     ...++- .+|..++   ...+++...
T Consensus       156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~-----~g~~~~-~~p~~~~---~~~~~~~~~  222 (391)
T PRK07588        156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN----E-----VGRQVA-RVALRGD---RTLFLFIFR  222 (391)
T ss_pred             CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe----C-----CCCEEE-EEecCCC---CeEEEEEEE
Confidence            999999976322211 11 00011000 01111 0000000000    0     112332 4676544   222333222


Q ss_pred             CCCC--C--CccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchh
Q 007945          335 DPQA--G--SPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG  409 (584)
Q Consensus       335 ~~~~--~--~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g  409 (584)
                      ....  .  .+...+.+.+.+... +..... ++.+.-.... .+.+.......++..+|++|+|||||.++|+.|||+|
T Consensus       223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n  300 (391)
T PRK07588        223 AEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSG  300 (391)
T ss_pred             cCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcHH
Confidence            1111  1  112333333333211 111111 0011000000 0111110112245679999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHH
Q 007945          410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS  449 (584)
Q Consensus       410 ~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~  449 (584)
                      ++++|+..|++.|..+.  +. .   -..|+.|+...+..
T Consensus       301 ~aieDa~~La~~L~~~~--~~-~---~~al~~Y~~~R~~~  334 (391)
T PRK07588        301 LAITEAYVLAGELARAG--GD-H---RRAFDAYEKRLRPF  334 (391)
T ss_pred             HHHHHHHHHHHHHHhcc--CC-H---HHHHHHHHHHHHHH
Confidence            99999999998886432  11 1   12367888754443

>PRK06753 hypothetical protein; Provisional

Probab=99.93  E-value=5e-24  Score=227.10  Aligned_cols=304  Identities=19%  Similarity=0.185  Sum_probs=178.2

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~-  188 (584)
                      ||+|||| ++|+++|..|+++|++|+|+||++.+... ....+++..++.|..+|+++..  ..   .......+.+.. 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~--~~---~~~~~~~~~~~~~   76 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGI--KN---AGQILSTMNLLDD   76 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHH--Hh---cCCcccceeEEcC
Confidence            8999996 57999999999999999999999875432 3456889999999999986431  11   000001111111 


Q ss_pred             -CCc---ccc-cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          189 -KGE---IWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       189 -~~~---l~~-~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                       +..   +.. .....+.+++..|.+.|.+.+.  ..+++.++++++++.++++++|++.+|+++++++||+|||.+|.+
T Consensus        77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence             100   000 0122356899999999988874  358999999999998888899999889999999999999999999


Q ss_pred             HhHhcCCCCCC--ceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccC---CC
Q 007945          264 VKQIRSGRKPD--GVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID---PQ  337 (584)
Q Consensus       264 ~rql~~~~~~~--~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~---~~  337 (584)
                      |++++...+..  +.....+... ...+.......++.          ..+++| .+|..++    ..+++....   ..
T Consensus       155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~-~~p~~~~----~~~~~~~~~~~~~~  219 (373)
T PRK06753        155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWG----------TKGRFG-IVPLLNN----QAYWFITINAKERD  219 (373)
T ss_pred             HHHhCCCCCceEcceEEEEEEeccccccCccceEEEEc----------CCCEEE-EEEcCCC----eEEEEEEeccccCC
Confidence            99986433211  1110111110 01000000001110          134566 5787654    122222211   11


Q ss_pred             CCC-ccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCC-CCccCCCEEEeCCCCCCcCCCCCCchhhHHHH
Q 007945          338 AGS-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRH  414 (584)
Q Consensus       338 ~~~-~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~  414 (584)
                      +.. ..-.+.+.++++.. +.++.. ++.... .... ..+.+...+ .++..+|++|+|||||.++|.+|+|++++++|
T Consensus       220 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~D  296 (373)
T PRK06753        220 PKYSSFGKPHLQAYFNHYPNEVREI-LDKQSE-TGIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMED  296 (373)
T ss_pred             cccccccHHHHHHHHhcCChHHHHH-HHhCCc-ccce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHH
Confidence            110 11112223333322 111111 111100 0000 112222122 24567999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       415 ~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      +..|++.|..    .+  .  -+.++.|+...+.
T Consensus       297 a~~L~~~L~~----~~--~--~~al~~Y~~~r~~  322 (373)
T PRK06753        297 AIVLANCLNA----YD--F--EKALQRYDKIRVK  322 (373)
T ss_pred             HHHHHHHhhh----cc--H--HHHHHHHHHHhhH
Confidence            9999877742    11  1  1236678775443

>PRK07538 hypothetical protein; Provisional

Probab=99.93  E-value=1.7e-23  Score=226.67  Aligned_cols=310  Identities=17%  Similarity=0.211  Sum_probs=176.8

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~-  188 (584)
                      ||+|||| ++|+++|+.|+++|++|+|+||++..+.. ...++++..++.|.++|+++..  ..   .......+.|.. 
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l--~~---~~~~~~~~~~~~~   76 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL--DA---IGIRTRELAYFNR   76 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHH--Hh---hCCCCcceEEEcC
Confidence            8999996 56999999999999999999999865532 2345778889999999987542  11   111001111110 


Q ss_pred             -CCcccc-------cc-cccceeCHHHHHHHHHHHHHhC-CC-EEEeCceEEEEEEeCCeEEEEEcCC-----cEEEccE
Q 007945          189 -KGEIWV-------ED-ILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL  252 (584)
Q Consensus       189 -~~~l~~-------~~-~l~~~vd~~~L~~~L~~~a~~~-G~-~i~~~t~v~~v~~~~~gv~V~~~~G-----~~i~Arl  252 (584)
                       +..++.       .. ...+.+++..|++.|.+++.+. |. .++.+++|+++..+++++++.+.++     ++++||+
T Consensus        77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl  156 (413)
T PRK07538         77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV  156 (413)
T ss_pred             CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence             111110       00 0123589999999999998764 75 6999999999988888777776542     4899999


Q ss_pred             EEEecCCChHHHhHhcCCC-C--CCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCC--CC--
Q 007945          253 IIDAMGNFSPVVKQIRSGR-K--PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--PL--  324 (584)
Q Consensus       253 VIdADG~~S~v~rql~~~~-~--~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g--~~--  324 (584)
                      ||+|||.+|.+|+++.... +  +.+.....+.+. ..+...  ..+...       +. ..+.+. .||..++  +.  
T Consensus       157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~  225 (413)
T PRK07538        157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTG--RSMVMA-------GH-LDGKLV-VYPISEPVDADGR  225 (413)
T ss_pred             EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCC--CcEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence            9999999999999885332 1  111111111110 000000  000000       00 011222 3554321  00  


Q ss_pred             ccEEEEEEccCC---CC-----CC-ccHHHHHHHHHhhCcc---cccccCCceeEEEEEeeeeccccCCCC-CccCCCEE
Q 007945          325 DRTTYMFTYIDP---QA-----GS-PKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRIL  391 (584)
Q Consensus       325 ~~~~~L~~~~~~---~~-----~~-~~l~~l~~~~~~~lp~---~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvl  391 (584)
                      ....+.+.....   ..     .. ...+++++.|-...+.   .... +...   .. .-.+|++...+. ++..+|++
T Consensus       226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~-~~~~p~~~~~~~~~w~~grv~  300 (413)
T PRK07538        226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EA-IYEYPMVDRDPLPRWTRGRVT  300 (413)
T ss_pred             eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cc-eeeccccccCCCCcccCCcEE
Confidence            011122111111   00     01 1344444332211111   1110 0100   01 112466543333 56779999


Q ss_pred             EeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHH
Q 007945          392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS  449 (584)
Q Consensus       392 LvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~  449 (584)
                      |+|||||.++|++|+|.+.+++|+..|++.|.+.   ++    .-+.|+.|+...+..
T Consensus       301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~~R~~~  351 (413)
T PRK07538        301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEAERRPA  351 (413)
T ss_pred             EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999888653   21    123377888865443

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.92  E-value=1.4e-23  Score=226.24  Aligned_cols=298  Identities=14%  Similarity=0.131  Sum_probs=172.7

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      -+|+|||| ++|+++|..|+++|++|.|+||.+.... .+...+++..++.|..+|++++..  .   ..+.+..+.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~--~---~~~~~~~~~~~~   77 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLS--G---TGVTPKALYLMD   77 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHh--h---cccCcceEEEec
Confidence            47999996 4699999999999999999999875432 244678899999999999875421  1   111111111111


Q ss_pred             CCc-----------cccc--ccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcc
Q 007945          189 KGE-----------IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH  251 (584)
Q Consensus       189 ~~~-----------l~~~--~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~---~G~~i~Ar  251 (584)
                      +..           ....  ....+.+.+..|.+.|.+++.+. |++++.+++++++..++++++|++.   ++++++||
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad  157 (400)
T PRK06475         78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA  157 (400)
T ss_pred             CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence            000           0000  00113578999999999999775 7899999999999888888888763   34689999


Q ss_pred             EEEEecCCChHHHhHhcCCC-CCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945          252 LIIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (584)
Q Consensus       252 lVIdADG~~S~v~rql~~~~-~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~  329 (584)
                      +||+|||.+|.+|++++... .+.+.....+.+. ..++. .....+..........+.+.. +. .+|..++.  ...+
T Consensus       158 lvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~-~~p~~~~~--~~~~  232 (400)
T PRK06475        158 YLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNKAH-FI-AYPVKGGK--FFNF  232 (400)
T ss_pred             EEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCCCE-EE-EEEccCCc--EEEE
Confidence            99999999999999985421 1222221111111 11110 000000000000000011222 22 47776542  2223


Q ss_pred             EEEccCCC-C---CCccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCc-cCCCEEEeCCCCCCcCCC
Q 007945          330 MFTYIDPQ-A---GSPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV  403 (584)
Q Consensus       330 L~~~~~~~-~---~~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~-~~~rvlLvGDAA~~v~Pl  403 (584)
                      +....+.. .   ..+.-.+.+.+++... |.+... ++...   . ...+|++...+.++ ..+|++|+|||||.++|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~  307 (400)
T PRK06475        233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF  307 (400)
T ss_pred             EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence            22111111 1   1111122223333322 111211 11111   1 12456654444444 358999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHH
Q 007945          404 SFGGFGSLTRHLGRLSTGVY  423 (584)
Q Consensus       404 tGgG~g~~lr~~~~La~~i~  423 (584)
                      +|||.+++++|+..|++.|.
T Consensus       308 ~GqG~n~aieDa~~La~~L~  327 (400)
T PRK06475        308 AAQGAAMAIEDAAALAEALD  327 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHh
Confidence            99999999999999998774

>PRK05868 hypothetical protein; Validated

Probab=99.92  E-value=9.7e-23  Score=217.94  Aligned_cols=309  Identities=16%  Similarity=0.108  Sum_probs=172.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .||+|||| ++|+++|..|+++|++|+|+||++..+.. ....++...++.|.++|+++..  ... ...+....+...+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~--~~~-~~~~~~~~~~~~~   78 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA--QEH-KTRIRGASFVDRD   78 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH--Hhh-ccCccceEEEeCC
Confidence            48999996 56999999999999999999999875432 2235677788999999987532  110 1111111110000


Q ss_pred             CCccc-------ccc---cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          189 KGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       189 ~~~l~-------~~~---~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      +..+.       ...   ...+.+.+..|.+.|.+. ...|++++.++++++++.++++++|++++|++++|++||+|||
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence            00000       000   012356677888877553 3568899999999999888889999999999999999999999


Q ss_pred             CChHHHhHhcCCCCC-C-cee--eEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945          259 NFSPVVKQIRSGRKP-D-GVC--LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (584)
Q Consensus       259 ~~S~v~rql~~~~~~-~-~~~--~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~  334 (584)
                      .+|.+|+++...... . ...  ..+..+....+.+.....+.+          ...++. .||..++.  ....++.+.
T Consensus       158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~-~~~~~~~~--~~~~~~~~~  224 (372)
T PRK05868        158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYG----------DSTMAG-VYSARNNT--EARAALAFM  224 (372)
T ss_pred             CCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEec----------CCcEEE-EEecCCCC--ceEEEEEEe
Confidence            999999988432211 1 100  000000000000001111110          011222 45655431  111122221


Q ss_pred             CCC--CC---Cc-cHHHHHHHHHhh-C--cccccccCCceeEEEEEeeeec-cccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945          335 DPQ--AG---SP-KLEELLERYWDL-M--PEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSPVS  404 (584)
Q Consensus       335 ~~~--~~---~~-~l~~l~~~~~~~-l--p~~~~~~l~~~~~~~~~~g~~P-~~~~~~~~~~~~rvlLvGDAA~~v~Plt  404 (584)
                      ...  ..   .+ ..+++.+.|... .  +.+... +....   .  -+++ +......+++.+||+|+|||||.++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~---~--~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~  298 (372)
T PRK05868        225 DTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP---D--FYFDEMSQILMDRWSRGRVALVGDAGYCCSPLS  298 (372)
T ss_pred             cCCcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC---c--eeeccceEEecCCCCCCCeeeeecccccCCCcc
Confidence            111  00   11 223333333211 1  111111 00000   0  0122 1111223567899999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      |||.|+++.|+..|++.|...  .+++ .   +.++.||..++-
T Consensus       299 GqGa~~AleDa~~La~~L~~~--~~~~-~---~al~~ye~~~~~  336 (372)
T PRK05868        299 GQGTSVALLGAYILAGELKAA--GDDY-Q---LGFANYHAEFHG  336 (372)
T ss_pred             CccHHHHHHHHHHHHHHHHhc--CCCH-H---HHHHHHHHHHhH
Confidence            999999999999999888542  1111 1   236788875433

>PRK06126 hypothetical protein; Provisional

Probab=99.92  E-value=6.4e-23  Score=229.86  Aligned_cols=297  Identities=13%  Similarity=0.129  Sum_probs=170.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhccc--------
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKF--------  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~--------  179 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+||++.+.. ++...++...++.|..+|++++..-.. ....+        
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g-~~~~~~~~~~~~~   85 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAG-LPVDYPTDIAYFT   85 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhc-CCccccCCceEEe
Confidence            689999996 5799999999999999999999975442 355678999999999999875421000 00000        


Q ss_pred             --CCc---eeeecCCC-cc---------cccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc
Q 007945          180 --NPN---RCGFEGKG-EI---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA  243 (584)
Q Consensus       180 --~~~---~v~f~~~~-~l---------~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~  243 (584)
                        ...   .+.+.... ..         +......+.+++..|++.|.+++.+. |++++.++++++++.+++++++++.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~  165 (545)
T PRK06126         86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE  165 (545)
T ss_pred             cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence              110   01111000 00         00011234578889999999999875 7899999999999988888877764


Q ss_pred             ---CCc--EEEccEEEEecCCChHHHhHhcCCCCCCc-eeeEEEEeee--ccCC---CcceeEEccCCcccccCCCCceE
Q 007945          244 ---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEVQL  312 (584)
Q Consensus       244 ---~G~--~i~ArlVIdADG~~S~v~rql~~~~~~~~-~~~~vg~~a~--g~~~---~~~~di~~~~~~~~~~~~~~~~~  312 (584)
                         +|+  +++|++||+|||.+|.+|++++....-.. ....+.....  ....   ......++...   +    + ..
T Consensus       166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---p----~-~~  237 (545)
T PRK06126        166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFN---P----D-RR  237 (545)
T ss_pred             ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEEC---C----C-cc
Confidence               353  79999999999999999999875421111 0000000000  0000   00000000000   0    0 01


Q ss_pred             EEEEccCCCCCCccEEEEEE-ccCCCC-CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCE
Q 007945          313 FWEAFPAGSGPLDRTTYMFT-YIDPQA-GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI  390 (584)
Q Consensus       313 ~W~~fP~~~g~~~~~~~L~~-~~~~~~-~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rv  390 (584)
                      .. .+|....    ..+.+. +..... ...+-++..+.+.+.++  ...   ..++...  ..++.......++..+||
T Consensus       238 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~i~~~--~~w~~~~~~a~~~~~gRv  305 (545)
T PRK06126        238 GV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVG--EDI---DYEVLSV--VPWTGRRLVADSYRRGRV  305 (545)
T ss_pred             EE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcC--CCC---CeEEEee--cccchhheehhhhccCCE
Confidence            11 1222211    122222 211111 11121222222222221  011   1222211  112222223346678999


Q ss_pred             EEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 007945          391 LQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  427 (584)
Q Consensus       391 lLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~  427 (584)
                      +|+|||||.++|+.|||+|+++.|+..|++.|+..++
T Consensus       306 ~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~  342 (545)
T PRK06126        306 FLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLN  342 (545)
T ss_pred             EEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999988774

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.92  E-value=4e-23  Score=221.93  Aligned_cols=295  Identities=14%  Similarity=0.138  Sum_probs=176.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..||+|||| ++|+++|..|+++|++|+|+||.+.++.. +...+++..++.|..+|+++...  .   ..+....+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~--~---~~~~~~~~~~~   78 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAAR--Q---RAVFTDHLTMM   78 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHH--h---hccCCcceEEE
Confidence            579999996 56999999999999999999999865532 23457888999999999875421  1   11101111111


Q ss_pred             C---CCc---cccc----ccc---cceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945          188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (584)
Q Consensus       188 ~---~~~---l~~~----~~l---~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlV  253 (584)
                      +   +..   +...    ..+   ...+++..|.+.|.+++.+.+ ++++.+++++++..++++++|++.+|++++|++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  158 (396)
T PRK08163         79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL  158 (396)
T ss_pred             eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence            0   000   0000    001   135789999999999998775 7999999999998888889898888889999999


Q ss_pred             EEecCCChHHHhHhcCC-CCCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       254 IdADG~~S~v~rql~~~-~~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      |+|||.+|.+++++... ..+.+.....+... ..++. ...   . ....... + ..+++| .||..++.  ...+++
T Consensus       159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~~---~-~~~~~~~-g-~~~~~~-~~p~~~g~--~~~~~~  228 (396)
T PRK08163        159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPE-DLR---I-NAPVLWA-G-PHCHLV-HYPLRGGE--QYNLVV  228 (396)
T ss_pred             EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcc-hhc---c-CccEEEE-c-CCceEE-EEEecCCe--EEEEEE
Confidence            99999999999887322 12222211111110 01110 000   0 0000000 1 134555 57876541  122222


Q ss_pred             EccCCCC-----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCC-CccCCCEEEeCCCCCCcCCCCC
Q 007945          332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSF  405 (584)
Q Consensus       332 ~~~~~~~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLvGDAA~~v~PltG  405 (584)
                      .+.....     ...+.+++.+.|-...|..... ++...    .+..++.+...+. ++..+|++|+|||||.++|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G  303 (396)
T PRK08163        229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPT----SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA  303 (396)
T ss_pred             EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCC----ceeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence            2211110     1113344444333334433322 11111    0111222222222 4567999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHH
Q 007945          406 GGFGSLTRHLGRLSTGVYE  424 (584)
Q Consensus       406 gG~g~~lr~~~~La~~i~~  424 (584)
                      +|.+++++|+..|++.|..
T Consensus       304 qG~n~ai~Da~~La~~L~~  322 (396)
T PRK08163        304 QGACMALEDAVTLGKALEG  322 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHh
Confidence            9999999999999987754

>PRK06847 hypothetical protein; Provisional

Probab=99.92  E-value=1.1e-22  Score=216.75  Aligned_cols=291  Identities=18%  Similarity=0.159  Sum_probs=172.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..||+|||| ++|+++|..|+++|++|+|+||++.+... ....+++..++.|..+|+++..     ....+....+.+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~-----~~~~~~~~~~~~~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDEC-----LEAGFGFDGVDLF   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHH-----HHhCCCccceEEE
Confidence            579999996 57999999999999999999998765422 1234778888999999976431     1111111111111


Q ss_pred             C--CC--------ccccc-ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEe
Q 007945          188 G--KG--------EIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (584)
Q Consensus       188 ~--~~--------~l~~~-~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdA  256 (584)
                      .  +.        ....+ ......+++..|.+.|.+.+.+.|++++.++++++++.++++++|.+.+|+++.|++||+|
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A  158 (375)
T PRK06847         79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA  158 (375)
T ss_pred             CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence            0  00        00000 0112457889999999999988899999999999998888888898888999999999999


Q ss_pred             cCCChHHHhHhc-CCCCC--CceeeEEEEeeeccCCC-cceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945          257 MGNFSPVVKQIR-SGRKP--DGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (584)
Q Consensus       257 DG~~S~v~rql~-~~~~~--~~~~~~vg~~a~g~~~~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~  332 (584)
                      ||.+|.+++++. ....+  .+.....+    .++.. .........+        ....+. .+|..++    ..+.+.
T Consensus       159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~-~~p~~~~----~~~~~~  221 (375)
T PRK06847        159 DGLYSKVRSLVFPDEPEPEYTGQGVWRA----VLPRPAEVDRSLMYLG--------PTTKAG-VVPLSED----LMYLFV  221 (375)
T ss_pred             cCCCcchhhHhcCCCCCceeccceEEEE----EecCCCCccceEEEeC--------CCcEEE-EEcCCCC----eEEEEE
Confidence            999999999873 21111  11110000    11100 0000000000        112232 3566543    223332


Q ss_pred             ccCCCC-C---CccHHHHHHHHHhhCcc--cccccCCceeEEEEEeeeeccccC-CCCCccCCCEEEeCCCCCCcCCCCC
Q 007945          333 YIDPQA-G---SPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSF  405 (584)
Q Consensus       333 ~~~~~~-~---~~~l~~l~~~~~~~lp~--~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLvGDAA~~v~PltG  405 (584)
                      ...... .   ...+.+.+++.+...+.  ..... +.+.-... ....|.+.. .+.++..+|++|+|||||.++|.+|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~G  299 (375)
T PRK06847        222 TEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELR-EQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLA  299 (375)
T ss_pred             eccCcccccCChHHHHHHHHHHHhhcCchHHHHHH-HhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCcc
Confidence            221110 0   11333444444333221  11110 11100011 112344322 1235678999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHH
Q 007945          406 GGFGSLTRHLGRLSTGVYE  424 (584)
Q Consensus       406 gG~g~~lr~~~~La~~i~~  424 (584)
                      +|.+.+++|+..|++.|..
T Consensus       300 qG~n~aieDA~~La~~L~~  318 (375)
T PRK06847        300 QGAGMAIEDAIVLAEELAR  318 (375)
T ss_pred             ccHHHHHHHHHHHHHHHhh
Confidence            9999999999999988754

>PRK07236 hypothetical protein; Provisional

Probab=99.90  E-value=5.8e-22  Score=212.71  Aligned_cols=153  Identities=19%  Similarity=0.177  Sum_probs=106.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||+||||| +|+++|..|+++|++|+|+||++.+...+.  ..+++..++.|..+|+....+.    ........+..
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~----~~~~~~~~~~~   81 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI----GVPSRERIYLD   81 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc----ccCccceEEEe
Confidence            5899999965 699999999999999999999875433333  2468888999999998653211    11111110100


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      ..+..+.........+.+..+.+.|.+.+  .+.+++.+++|++++.++++++|++.+|++++|++||+|||.+|.+|++
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~  159 (386)
T PRK07236         82 RDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ  159 (386)
T ss_pred             CCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence            11111110000011245666777776654  2457999999999999888999999999999999999999999999998


Q ss_pred             hc
Q 007945          267 IR  268 (584)
Q Consensus       267 l~  268 (584)
                      +.
T Consensus       160 l~  161 (386)
T PRK07236        160 LL  161 (386)
T ss_pred             hC
Confidence            74

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.88  E-value=3e-20  Score=209.29  Aligned_cols=318  Identities=19%  Similarity=0.180  Sum_probs=175.3

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCc----ccccCCHHHHHHHHHcCCCcccccchh--hh-cc-
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GRE----QEWNISRKELLELVESGILVEDDIDEA--TA-TK-  178 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~----r~w~Is~~~l~~L~~lGl~~~~ele~~--i~-~~-  178 (584)
                      ..++|+||||| +|+++|..|+++|++|.|+||.+.. +..    +...|++..++.|..+|++..+++...  +. .. 
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            35899999965 6999999999999999999998632 111    235688899999999996433222111  00 00 


Q ss_pred             --c-C---Cce-eeecCCCcc-cccccccceeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEE
Q 007945          179 --F-N---PNR-CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILS  249 (584)
Q Consensus       179 --~-~---~~~-v~f~~~~~l-~~~~~l~~~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~  249 (584)
                        + +   ..+ +.+...... .......+.|++..|++.|.+.+   +. .++.+++|+++..++++++|++.+|++++
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~  236 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYE  236 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence              0 0   000 111110000 00011234689999999997654   33 46788999999988999999998999999


Q ss_pred             ccEEEEecCCChHHHhHhcCCCC--CCceeeEEEEeeeccC-C-CcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945          250 SHLIIDAMGNFSPVVKQIRSGRK--PDGVCLVVGSCARGFK-D-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD  325 (584)
Q Consensus       250 ArlVIdADG~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~-~-~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~  325 (584)
                      |++||+|||.+|.+|+++....+  +.+.+...+.+ ...+ + .......+        .+ ..+++- .+|.+++.  
T Consensus       237 aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g~--  303 (668)
T PLN02927        237 GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGGK--  303 (668)
T ss_pred             cCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCCe--
Confidence            99999999999999998743222  12211111111 0000 0 00000000        00 122222 23443331  


Q ss_pred             cEEEEEEccCC-C-CCCccHHHHHHHHHh-hCcccccccCCceeEEEEEeeeeccccCCC-CCccCCCEEEeCCCCCCcC
Q 007945          326 RTTYMFTYIDP-Q-AGSPKLEELLERYWD-LMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQS  401 (584)
Q Consensus       326 ~~~~L~~~~~~-~-~~~~~l~~l~~~~~~-~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLvGDAA~~v~  401 (584)
                      ...|.|...+. . ......++.+.+.++ ..|.++.. +......  .....+++...+ .++..+||+|+|||||.++
T Consensus       304 ~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~--~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~  380 (668)
T PLN02927        304 MQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEED--AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQ  380 (668)
T ss_pred             EEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCccc--cceeeeEEeccCCCccccCcEEEEcCccCCCC
Confidence            11111211110 0 011112222222222 12222221 1110000  001122332222 2456799999999999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHhCCCC---ChhhhHhhhchhhh
Q 007945          402 PVSFGGFGSLTRHLGRLSTGVYEAVRGDFV---DSYSLSLLNPYMPN  445 (584)
Q Consensus       402 PltGgG~g~~lr~~~~La~~i~~AL~~~~l---s~~~l~~L~~Ye~~  445 (584)
                      |..|+|.++++.|+..|+..|.++++....   +....+.|+.|+..
T Consensus       381 P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~  427 (668)
T PLN02927        381 PNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEES  427 (668)
T ss_pred             CccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHH
Confidence            999999999999999999999888643110   11112347788874

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.87  E-value=1.7e-20  Score=203.27  Aligned_cols=318  Identities=15%  Similarity=0.165  Sum_probs=173.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCccccc-chhhhcccCCceeeec
Q 007945          112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDI-DEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~el-e~~i~~~~~~~~v~f~  187 (584)
                      .|+||||| +|+++|..|+++| ++|+|+||++..+.. ....+++..++.|..+|+.+...- .......+...++.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            69999965 6999999999998 699999998765421 123468888999999998643210 0000011111111111


Q ss_pred             CCCc---cc---ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGE---IW---VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~---l~---~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ....   +.   .+..-...+++..|.+.|.+.+.  ...+..+++|+++..++++++|++.+|.+++|++||+|||.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence            1100   00   01100124788889988887763  3567889999999988889999998999999999999999999


Q ss_pred             HHHhHhcCC-----CC--CCceeeEEEEeee-ccCCC-c---ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945          262 PVVKQIRSG-----RK--PDGVCLVVGSCAR-GFKDN-S---TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (584)
Q Consensus       262 ~v~rql~~~-----~~--~~~~~~~vg~~a~-g~~~~-~---~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~  329 (584)
                      .+|+++...     ..  +.+.+..-+.+.. .+... .   ..+-+. ..+.... + ..++++ .||..++.  ...+
T Consensus       160 ~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~-~~p~~~g~--~~~~  233 (414)
T TIGR03219       160 ALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLV-DVPQMYL-G-LDGHIL-TFPVRQGR--LINV  233 (414)
T ss_pred             HHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccccccc-ccceEEE-c-CCCeEE-EEECCCCc--EEEE
Confidence            999987421     11  1111111111100 00000 0   000000 0000000 1 123444 47876652  2222


Q ss_pred             EEEccCCC-------C-----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC-CCCccCCCEEEeCCC
Q 007945          330 MFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDA  396 (584)
Q Consensus       330 L~~~~~~~-------~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLvGDA  396 (584)
                      +....+..       .     .....+++.+.|-...|.++.+ ++...  ..  ..++.+... ..++..+||+|+|||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiGDA  308 (414)
T TIGR03219       234 VAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIGDA  308 (414)
T ss_pred             EEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEEcc
Confidence            22111100       0     0113344444332211222211 01110  00  011222111 225667999999999


Q ss_pred             CCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          397 SGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       397 A~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ||.+.|..|+|.++++.|+..|++.|......+. +.  -+.|+.|+..
T Consensus       309 AH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~~--~~al~~Ye~~  354 (414)
T TIGR03219       309 AHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-DL--PALLEAYDDV  354 (414)
T ss_pred             cCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-hH--HHHHHHHHHH
Confidence            9999999999999999999999988876532211 11  1226677764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.86  E-value=4.4e-21  Score=198.48  Aligned_cols=325  Identities=16%  Similarity=0.133  Sum_probs=201.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCC--C--------CcccccCCHHHHHHHHHcCCCcccccchh
Q 007945          110 TFDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLK--G--------REQEWNISRKELLELVESGILVEDDIDEA  174 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr----~GlrVlLIEr~~~~--~--------~~r~w~Is~~~l~~L~~lGl~~~~ele~~  174 (584)
                      .|||||||| ++|.++|+.|..    +-+||+|+|-...+  +        .+|.-.+|+.++..|..+|+|+..  .+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i--~~~  113 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHI--FHD  113 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHh--hhh
Confidence            699999996 579999999984    37899999977322  1        134445888899999998988642  121


Q ss_pred             hhcccCC---------ceeeecCCCcccccccccceeCHHHHHHHHHH--HHHh-CCCEEEeCceEEEEEEe-------C
Q 007945          175 TATKFNP---------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY-------E  235 (584)
Q Consensus       175 i~~~~~~---------~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~--~a~~-~G~~i~~~t~v~~v~~~-------~  235 (584)
                      ....++.         ..+.|.. ....  ...++.++++.++..|..  ...+ ..+++...+.+..+.+-       +
T Consensus       114 R~~~~~~~~v~Ds~s~a~I~~~~-d~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n  190 (481)
T KOG3855|consen  114 RYQKFSRMLVWDSCSAALILFDH-DNVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN  190 (481)
T ss_pred             ccccccceeeecccchhhhhhcc-cccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence            1122211         1122221 1111  112467888888887773  3333 25799999999888762       1


Q ss_pred             C-eEEEEEcCCcEEEccEEEEecCCChHHHhHhcCC---CCCCceeeEEEEeeecc--C-CCcceeEEccCCccc--ccC
Q 007945          236 N-AAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVK--KVG  306 (584)
Q Consensus       236 ~-gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~~---~~~~~~~~~vg~~a~g~--~-~~~~~di~~~~~~~~--~~~  306 (584)
                      . ...+++.+|..+..|++|+|||.+|.+|+..++.   ..++....+ ++..-..  . +....+.|...+|+.  |++
T Consensus       191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havV-Atl~l~~~~~~~~~AwQRFlP~GpiAllpl~  269 (481)
T KOG3855|consen  191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVV-ATLKLEEEAILNGVAWQRFLPTGPIALLPLS  269 (481)
T ss_pred             cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeee-EEEEecccccccchhHHhcCCCCceeecccc
Confidence            1 3568888999999999999999999999976653   445544422 2211111  1 233445666777776  445


Q ss_pred             CCCceEEEEEccCCCCC--------------------CccEEEEEEccCCCCCCccHHHHHHHHHhhCccccccc--CCc
Q 007945          307 DSEVQLFWEAFPAGSGP--------------------LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVT--LDN  364 (584)
Q Consensus       307 ~~~~~~~W~~fP~~~g~--------------------~~~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~--l~~  364 (584)
                      ++...++|..-|.....                    ..+..|.+..+   ...+...++-+.++.......+..  ..-
T Consensus       270 d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~---~al~~~~~~~~sl~~~~k~~~~~q~pp~V  346 (481)
T KOG3855|consen  270 DTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDAD---FALNGRAQLSESLLNTSKRLANQQYPPSV  346 (481)
T ss_pred             cccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchh---hhhcchhhccHHHHhccCcccccccCCeE
Confidence            66678999643321100                    00011110000   000011111111221110000100  012


Q ss_pred             eeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945          365 LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP  444 (584)
Q Consensus       365 ~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~  444 (584)
                      +++.......||+.+.+...++.+|+.++|||||-+||++|||++++..|+..|.+.+.+|+.+| ++..+.+.|+.|+.
T Consensus       347 ~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g-~DlgS~~~L~~y~~  425 (481)
T KOG3855|consen  347 FEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSG-LDLGSVEHLEPYER  425 (481)
T ss_pred             EEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhc-ccccchhhhhHHHH
Confidence            34444455678988877778999999999999999999999999999999999999999999987 47777666776665

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.83  E-value=4.2e-19  Score=194.43  Aligned_cols=302  Identities=19%  Similarity=0.200  Sum_probs=158.8

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC---CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh-----cc---c
Q 007945          112 DVIVCGG-TLGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TK---F  179 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~G---lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~-----~~---~  179 (584)
                      ||||||| ++|.++|+.|++.+   ++|+|||+...+.........+.....+..+|+-+.+-+..+-.     .+   |
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w   80 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW   80 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence            7999996 57999999999998   99999999987764433343443334555566543311111100     01   1


Q ss_pred             CC--ce--eeec---------------------CC----------------Ccc-------cccccccceeCHHHHHHHH
Q 007945          180 NP--NR--CGFE---------------------GK----------------GEI-------WVEDILNLGVSPAKLIEIV  211 (584)
Q Consensus       180 ~~--~~--v~f~---------------------~~----------------~~l-------~~~~~l~~~vd~~~L~~~L  211 (584)
                      ..  ..  ..|.                     +.                ..+       ..+....+.+|+..|++.|
T Consensus        81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L  160 (454)
T PF04820_consen   81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL  160 (454)
T ss_dssp             SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred             CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence            00  00  0000                     00                000       0111234569999999999


Q ss_pred             HHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCCChHHHhHh-cCCC-CCCceeeEEEEeeecc
Q 007945          212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGR-KPDGVCLVVGSCARGF  287 (584)
Q Consensus       212 ~~~a~~~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~~S~v~rql-~~~~-~~~~~~~~vg~~a~g~  287 (584)
                      +++|.+.|+++++++ |+++..++++.  .|++++|++++||+||||+|..|.+.++. +.+. ......+.-...+...
T Consensus       161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~  239 (454)
T PF04820_consen  161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV  239 (454)
T ss_dssp             HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred             HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence            999999999999885 88888877764  47788899999999999999999998773 2211 0111110000111111


Q ss_pred             C--C--CcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCC
Q 007945          288 K--D--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD  363 (584)
Q Consensus       288 ~--~--~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~  363 (584)
                      +  +  ..+..+.     ..     ..+|+| .+|..++   +.+++ .+.....   +-++.++++.+.++.....  .
T Consensus       240 ~~~~~~~~~T~~~-----a~-----~~GW~W-~IPL~~~---~~~G~-V~s~~~~---s~~~A~~~l~~~l~~~~~~--~  299 (454)
T PF04820_consen  240 PNEDPPEPYTRST-----AF-----EAGWIW-YIPLQNR---RGSGY-VYSSDFI---SDDEAEAELLAYLGGSPEA--E  299 (454)
T ss_dssp             E-SSCTTSSEEEE-----EE-----SSEEEE-EEEESSE---EEEEE-EEETTTS---HHHHHHHHHHHHHTCHCTT--S
T ss_pred             CcCCCCCCceeEE-----ec-----CCceEE-EccCCCc---ceEEE-EeccccC---CHHHHHHHHHHhcchhhhc--c
Confidence            1  0  0111110     11     258999 5998864   33322 2322111   2223333333333221111  1


Q ss_pred             ceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchh
Q 007945          364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (584)
Q Consensus       364 ~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye  443 (584)
                      . ...+...|       ...+...+|+++|||||++++|+++.|+.+++..    ++.|.+++..+..+...   +..|+
T Consensus       300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~a----a~~l~~~l~~~~~~~~~---~~~Yn  364 (454)
T PF04820_consen  300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSA----AEALAEALPDDDFSPAA---LDRYN  364 (454)
T ss_dssp             C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHH----HHHHHHTHHCTTCCHHH---HHHHH
T ss_pred             h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHH----HHHHHHhcccCCCCHHH---HHHHH
Confidence            1 11111111       1235678999999999999999999999988874    45566677766555443   56787


Q ss_pred             hhhhHH
Q 007945          444 PNLSAS  449 (584)
Q Consensus       444 ~~~~~~  449 (584)
                      ..+...
T Consensus       365 ~~~~~~  370 (454)
T PF04820_consen  365 RRMRRE  370 (454)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            755444

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.82  E-value=3.2e-19  Score=186.09  Aligned_cols=294  Identities=18%  Similarity=0.178  Sum_probs=155.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhccc--CCceeee
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF--NPNRCGF  186 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~--~~~~v~f  186 (584)
                      -+||||||| +|+++|..|+|+|++|+|+|++..++.. ...++.-...+.|+.+|+-+      .+....  -..++-.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e------~i~~~gip~~~~v~~   76 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKE------QIREQGIPLGGRVLI   76 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHH------HHHHhcCcccceeee
Confidence            489999987 5999999999999999999997766543 23445555677777777321      111111  0111111


Q ss_pred             cC--CC---ccccccc--ccceeCHHHHHHHHHHHHHhCCCEEEeCc------eEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945          187 EG--KG---EIWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI  253 (584)
Q Consensus       187 ~~--~~---~l~~~~~--l~~~vd~~~L~~~L~~~a~~~G~~i~~~t------~v~~v~~~~~gv~V~~~~G~~i~ArlV  253 (584)
                      ++  +.   .+.+++.  .-..+.+..+...+...+... ..++.+.      ....++......+|++.+|.++.+|++
T Consensus        77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll  155 (420)
T KOG2614|consen   77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL  155 (420)
T ss_pred             ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence            11  11   0111111  111244555555555555443 3444442      444444445556788889999999999


Q ss_pred             EEecCCChHHHhHhcCC-CCCCceeeEEEEeeeccC-CCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945          254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (584)
Q Consensus       254 IdADG~~S~v~rql~~~-~~~~~~~~~vg~~a~g~~-~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L  330 (584)
                      |+|||+.|.||+.+... .+++..|-..|...  ++ .... ..++.    ...    +.-+.|   |.+..  ....|.
T Consensus       156 igCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~----~~~----~~~~~~---~~~~~--~~~~y~  220 (420)
T KOG2614|consen  156 IGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFA----IYG----NGLHSW---PRPGF--HLIAYW  220 (420)
T ss_pred             EEcCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceec----ccC----CeEEEc---ccCCc--eEEEEE
Confidence            99999999999998754 33444332211110  11 1111 11111    110    112222   22211  011221


Q ss_pred             EEc--------cCC-CCC--CccHHHHHHHHHhhCccccccc-CCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCC
Q 007945          331 FTY--------IDP-QAG--SPKLEELLERYWDLMPEYQGVT-LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG  398 (584)
Q Consensus       331 ~~~--------~~~-~~~--~~~l~~l~~~~~~~lp~~~~~~-l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~  398 (584)
                      +.-        ... .++  .....+..+.+.+.+|+.-... .+.+  .+...-..|.+.....+...++++|+|||||
T Consensus       221 ~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i--~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaH  298 (420)
T KOG2614|consen  221 FLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESI--VRTPLADRPPWPLISVKCSPGNVVLLGDAAH  298 (420)
T ss_pred             eecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHh--hhchhhhcCCcCeeeeccCCCeEEEeccccc
Confidence            110        000 000  1123344444444444433321 1111  1110001111100011223468999999999


Q ss_pred             CcCCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 007945          399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  428 (584)
Q Consensus       399 ~v~PltGgG~g~~lr~~~~La~~i~~AL~~  428 (584)
                      .+-|.-|||.+.++.|+-.|++.+++|..+
T Consensus       299 aM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d  328 (420)
T KOG2614|consen  299 AMTPFLGQGGNCAFEDCVVLAECLDEAIND  328 (420)
T ss_pred             ccCCcccccccchHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999873

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.78  E-value=9.1e-17  Score=165.08  Aligned_cols=393  Identities=17%  Similarity=0.190  Sum_probs=208.6

Q ss_pred             CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCccc-ccchhhhcccCCce
Q 007945          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVED-DIDEATATKFNPNR  183 (584)
Q Consensus       107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~-ele~~i~~~~~~~~  183 (584)
                      .+..+||||||+| +|+++|++|+|.|.||.||||.-... +-...-+.+.....|.++|+-+-. +++......|    
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy----  117 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY----  117 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence            4457999999976 69999999999999999999985321 111223445566788888875321 1222222222    


Q ss_pred             eeecCCCcccccc--------cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEc
Q 007945          184 CGFEGKGEIWVED--------ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSS  250 (584)
Q Consensus       184 v~f~~~~~l~~~~--------~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~A  250 (584)
                      .-|.++.+...|.        .-+..+.+.+|.+.|++++......-++..+|.++..+++.++ |+.+  .|+  +..|
T Consensus       118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A  197 (509)
T KOG1298|consen  118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA  197 (509)
T ss_pred             EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence            1222222222221        2244577789999999999988777677777888876666332 4443  343  6889


Q ss_pred             cEEEEecCCChHHHhHhcCCCCC-CceeeEEEEeeec--cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945          251 HLIIDAMGNFSPVVKQIRSGRKP-DGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (584)
Q Consensus       251 rlVIdADG~~S~v~rql~~~~~~-~~~~~~vg~~a~g--~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~  327 (584)
                      .+-|-|||-.|.+||.+...... -..+ .||....+  .+....++++++. |.+         +. .||....+   +
T Consensus       198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~-fVG~vl~N~~l~~p~hghvIL~~-psp---------il-~Y~ISStE---v  262 (509)
T KOG1298|consen  198 PLTVVCDGCFSNLRRSLCDPKVEEVPSY-FVGLVLKNCRLPAPNHGHVILSK-PSP---------IL-VYQISSTE---V  262 (509)
T ss_pred             ceEEEecchhHHHHHHhcCCcccccchh-eeeeeecCCCCCCCCcceEEecC-CCc---------EE-EEEecchh---e
Confidence            99999999999999988532211 0111 23333222  2234566776652 221         11 46655431   3


Q ss_pred             EEEEEccCC-CCC--CccHHHHHHHHHh-hCccc-ccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCC
Q 007945          328 TYMFTYIDP-QAG--SPKLEELLERYWD-LMPEY-QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP  402 (584)
Q Consensus       328 ~~L~~~~~~-~~~--~~~l~~l~~~~~~-~lp~~-~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~P  402 (584)
                      .-++.+... -+.  +..+..++.+-+. ..|.- +..-++.++  ....-..|..+..+......+++++|||--+-||
T Consensus       263 Rcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~--~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHP  340 (509)
T KOG1298|consen  263 RCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVD--EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHP  340 (509)
T ss_pred             EEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhh--ccchhcCccccCCCCcCCCCceEEEcccccccCC
Confidence            334444321 010  1122222222111 11211 111000110  0011134544333334567899999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHh
Q 007945          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQK  482 (584)
Q Consensus       403 ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~  482 (584)
                      +||+|+..++.|...|-+.|.-     ..+-.+-+.+..|-.   +.+-.+|.|         .-.||-|.+++..+|-.
T Consensus       341 ltggGMtV~l~Di~lLr~ll~p-----l~dL~d~ekv~~~i~---sFy~~RKp~---------s~tINtLa~Aly~vf~a  403 (509)
T KOG1298|consen  341 LTGGGMTVALSDIVLLRRLLKP-----LPDLSDAEKVSDYIK---SFYWIRKPY---------SATINTLANALYQVFVA  403 (509)
T ss_pred             ccCCceEeehhHHHHHHHHhcc-----ccccccHHHHHHHHH---HHHHhhcch---------hHHHHHHHHHHHHHhcC
Confidence            9999999999988877665532     112222222222222   111122222         33467777777766665


Q ss_pred             cCCcccccccccccchhHHHHHHHHHHHhCCCChH---HHHhhcCcchhhhhhHHHHHHHHHHHHHhhh
Q 007945          483 LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIP---SIFKQVGIPVLVDWSGHFFMLGYYTLLSTFA  548 (584)
Q Consensus       483 lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  548 (584)
                      -.++.+..+=+          .-..-+.+--.-+.   .+|.-+...+ +..+.||+..++|+.-.-+.
T Consensus       404 s~dea~~~mr~----------gCfdYl~~GG~c~sGpv~lLsGlnP~P-l~Lv~HffAValy~i~~ll~  461 (509)
T KOG1298|consen  404 STDEARKAMRK----------GCFDYLKRGGFCVSGPVALLSGLNPRP-LSLVLHFFAVALYGIYRLLS  461 (509)
T ss_pred             CchHHHHHHHH----------HHHHHHhcCCccccchHHHhcCCCCCc-hHHHHHHHHHHHHHHHHHcC
Confidence            44444433211          11111111111111   1111111111 36788999999999876543

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.72  E-value=2.8e-16  Score=182.60  Aligned_cols=285  Identities=16%  Similarity=0.137  Sum_probs=152.2

Q ss_pred             cEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          112 DVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|+|||| ++|+++|..|+++  |++|+|+||++..... ..-.+++..++.|...+-.....+... ...+....+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDA-FNHWDDIDVHFK   80 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHh-cccCCceEEEEC
Confidence            7999996 5699999999988  9999999999864321 112477777777765441000001000 011222222222


Q ss_pred             CCCccccccccc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          188 GKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       188 ~~~~l~~~~~l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      + ..+ ...... +.+++..|++.|.+++.+.|++++.+++++++..            ..++|++||+|||.+|.+|++
T Consensus        81 g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR~~  146 (765)
T PRK08255         81 G-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIRTR  146 (765)
T ss_pred             C-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHHHH
Confidence            1 111 111111 3588999999999999999999999998876521            125799999999999999997


Q ss_pred             hcCCCCCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEE-EccCCCCCCccEEEEEEccCC----CC---
Q 007945          267 IRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP----QA---  338 (584)
Q Consensus       267 l~~~~~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~-~fP~~~g~~~~~~~L~~~~~~----~~---  338 (584)
                      +.....+............+.... ...+-+...+.      ..+++|. .||..++   ...+++...+.    ..   
T Consensus       147 ~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~~  216 (765)
T PRK08255        147 YADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAGLDE  216 (765)
T ss_pred             HHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcCCcc
Confidence            642111110000000001111100 00000000011      1233332 3676544   23444444211    00   


Q ss_pred             -CCccHHHHHHHHHh-hCcccccccCCceeE-EEEEeeeeccccCCCCCccCCC----EEEeCCCCCCcCCCCCCchhhH
Q 007945          339 -GSPKLEELLERYWD-LMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       339 -~~~~l~~l~~~~~~-~lp~~~~~~l~~~~~-~~~~~g~~P~~~~~~~~~~~~r----vlLvGDAA~~v~PltGgG~g~~  411 (584)
                       ......+.+.+.+. ..+...-  +..... ....+..++..  ...++..+|    ++|+|||||.++|..|+|.+++
T Consensus       217 ~~~~~~~~~l~~~f~~~~~~~~l--i~~~~~~~~~~w~~~~~~--~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~a  292 (765)
T PRK08255        217 MSQEESIAFCEKLFADYLDGHPL--MSNASHLRGSAWINFPRV--VCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLA  292 (765)
T ss_pred             CCHHHHHHHHHHHhHHhcCCCcc--cccccccccceeeeccee--ccCCCccCCCcccEEEEEcCcccCCCCcchhHHHH
Confidence             01122233333332 2222111  111100 00112222211  123566677    9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 007945          412 TRHLGRLSTGVYEA  425 (584)
Q Consensus       412 lr~~~~La~~i~~A  425 (584)
                      +.|+..|++.|...
T Consensus       293 ieDa~~La~~L~~~  306 (765)
T PRK08255        293 LEDAIELARCLHEH  306 (765)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988653

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.40  E-value=4.7e-11  Score=120.77  Aligned_cols=253  Identities=18%  Similarity=0.199  Sum_probs=151.5

Q ss_pred             ccEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeec--cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945          250 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (584)
Q Consensus       250 ArlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g--~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~  327 (584)
                      |+++|.|||..|.+|+++. ..++.-....+|.+..+  .+....++++.+.          .+.++ .|+.+.+   -+
T Consensus         2 A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---et   66 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---ET   66 (276)
T ss_pred             CCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---ce
Confidence            7899999999999999987 33333333345555443  2345677777653          23345 5787754   35


Q ss_pred             EEEEEccCC-CCC--CccHHHHHHHHHh-hCcccccccC-CceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCC
Q 007945          328 TYMFTYIDP-QAG--SPKLEELLERYWD-LMPEYQGVTL-DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP  402 (584)
Q Consensus       328 ~~L~~~~~~-~~~--~~~l~~l~~~~~~-~lp~~~~~~l-~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~P  402 (584)
                      ..|+.+... -+.  +.++++++.+.+. .+|+.-+... ..++  ....-..|..+..+.+...++++++|||+++.||
T Consensus        67 R~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~--~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP  144 (276)
T PF08491_consen   67 RVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALE--DGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP  144 (276)
T ss_pred             EEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhc--cCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence            566666442 111  2256666655442 3443211100 0111  1112245665544455667999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhh-HhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHH
Q 007945          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQ  481 (584)
Q Consensus       403 ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l-~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~  481 (584)
                      +||||+..++.|+..|++.|...  .+..+.+.. +.++.|..+             +..   ..--||-+.+++...|.
T Consensus       145 LTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~~l~~f~~~-------------Rk~---~~s~iNiLA~aLY~lF~  206 (276)
T PF08491_consen  145 LTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLEALKKFHWK-------------RKP---LSSVINILAQALYSLFA  206 (276)
T ss_pred             ccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHH-------------Hcc---chHHHHHHHHHHHHHHh
Confidence            99999999999999999888776  222122221 222322221             111   22257777777776665


Q ss_pred             hcCCcccccccccccchhHHHHHHHHHHHhCCCChHHHHhhc-Ccchhh-hhhHHHHHHHHHHHHHhhh
Q 007945          482 KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV-GIPVLV-DWSGHFFMLGYYTLLSTFA  548 (584)
Q Consensus       482 ~lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~  548 (584)
                      .           |.-.+..|-+.-++-+.+-+.-+..-+..+ |+.+.- -.+.||+....|++...+.
T Consensus       207 a-----------~~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L~~Hff~Va~~~i~~~~~  264 (276)
T PF08491_consen  207 A-----------DDDYLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVLFYHFFAVAFYAIYLNLK  264 (276)
T ss_pred             C-----------CCHHHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence            4           222334566667777777777655544444 444433 6788999999999987654

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.38  E-value=1e-11  Score=126.34  Aligned_cols=133  Identities=24%  Similarity=0.320  Sum_probs=93.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCcccccchhhhccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w---------~Is~~~l~~L~~lGl~~~~ele~~i~~~~  179 (584)
                      +|||+|||| ++|+++|..|++.|++|+||||+..++.. .|         .+.....+.|.++|+.             
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~-------------   90 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIR-------------   90 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCC-------------
Confidence            699999995 57999999999999999999999765421 11         1111122333333321             


Q ss_pred             CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEE----c-----CCc
Q 007945          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLL----A-----EGK  246 (584)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V~~----~-----~G~  246 (584)
                            |....    +.  .+.+|+..+...|.+++.++|++++.+++|.++..+++ .+   ++..    .     +..
T Consensus        91 ------~~~~~----~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~  158 (257)
T PRK04176         91 ------YKEVE----DG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPL  158 (257)
T ss_pred             ------ceeec----Cc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcE
Confidence                  10000    01  13467889999999999999999999999999987666 32   2221    0     224


Q ss_pred             EEEccEEEEecCCChHHHhHhc
Q 007945          247 ILSSHLIIDAMGNFSPVVKQIR  268 (584)
Q Consensus       247 ~i~ArlVIdADG~~S~v~rql~  268 (584)
                      +++||+||+|+|++|.+.+.+.
T Consensus       159 ~i~Ak~VI~ATG~~a~v~~~l~  180 (257)
T PRK04176        159 TIEAKAVVDATGHDAEVVSVLA  180 (257)
T ss_pred             EEEcCEEEEEeCCCcHHHHHHH
Confidence            7999999999999999998763

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.36  E-value=1.7e-11  Score=124.58  Aligned_cols=132  Identities=27%  Similarity=0.433  Sum_probs=91.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~  179 (584)
                      +|||+|||| ++|+++|..||++|++|+||||+...+.. .|.         +.....+.+.++|+              
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi--------------   85 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGI--------------   85 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCC--------------
Confidence            699999995 67999999999999999999999876522 121         11111122222221              


Q ss_pred             CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CC
Q 007945          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG  245 (584)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~-V~~~-----------~G  245 (584)
                           .|....     +. .+..++..+.+.|.+++.++|++++.++.+.++..++++  +. |.+.           +.
T Consensus        86 -----~~~~~~-----~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~  154 (254)
T TIGR00292        86 -----RYEDEG-----DG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP  154 (254)
T ss_pred             -----Ceeecc-----Cc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence                 111000     00 123467788999999999999999999999999887762  22 2221           12


Q ss_pred             cEEEccEEEEecCCChHHHhHh
Q 007945          246 KILSSHLIIDAMGNFSPVVKQI  267 (584)
Q Consensus       246 ~~i~ArlVIdADG~~S~v~rql  267 (584)
                      .+++|++||||+|+.|.+.+.+
T Consensus       155 ~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       155 LTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             EEEEcCEEEEeecCCchHHHHH
Confidence            4799999999999999999876

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.31  E-value=1.2e-11  Score=120.19  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=85.0

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~  179 (584)
                      +|||+||| ||+|+++|..||++|+||+++||+..++- ..|.         +.......|.++|+-             
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG-g~~~Gg~lf~~iVVq~~a~~iL~elgi~-------------   82 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG-GMWGGGMLFNKIVVQEEADEILDELGIP-------------   82 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT-TTTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc-cccccccccchhhhhhhHHHHHHhCCce-------------
Confidence            69999999 56899999999999999999999987652 1121         111122333333321             


Q ss_pred             CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCc
Q 007945          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK  246 (584)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv---~V~~~---------~G~  246 (584)
                            +....     + .-+..|...+-..|..++.++|++++..+.|+++...+ +.+   ++.-.         |--
T Consensus        83 ------y~~~~-----~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl  150 (230)
T PF01946_consen   83 ------YEEYG-----D-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL  150 (230)
T ss_dssp             -------EE-S-----S-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred             ------eEEeC-----C-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence                  11000     1 11346788888999999999999999999999999888 443   33322         123


Q ss_pred             EEEccEEEEecCCChHHHhH
Q 007945          247 ILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       247 ~i~ArlVIdADG~~S~v~rq  266 (584)
                      +|+|++||||+||.+++.+.
T Consensus       151 ~i~ak~ViDaTGHda~v~~~  170 (230)
T PF01946_consen  151 TIRAKVVIDATGHDAEVVRV  170 (230)
T ss_dssp             EEEESEEEE---SSSSSTSH
T ss_pred             eEEEeEEEeCCCCchHHHHH
Confidence            89999999999999976653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.28  E-value=7.7e-11  Score=114.05  Aligned_cols=132  Identities=27%  Similarity=0.368  Sum_probs=93.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~  179 (584)
                      +.||+|||| |+|+++|+.||++|+||+++||+-.++- .-|.         +-...-+.|.++|+-            |
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI~------------y   96 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGIR------------Y   96 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCCc------------c
Confidence            469999994 6899999999999999999999876542 1121         111122334343321            1


Q ss_pred             CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCc
Q 007945          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGK  246 (584)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V~~~---------~G~  246 (584)
                             ...+     +. -+..|...+-..|..++.++|++|+..+.|.++...++ +|   ++.-.         |--
T Consensus        97 -------e~~e-----~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl  163 (262)
T COG1635          97 -------EEEE-----DG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL  163 (262)
T ss_pred             -------eecC-----Cc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence                   1001     10 13467778889999999999999999999999998877 33   33221         234


Q ss_pred             EEEccEEEEecCCChHHHhHh
Q 007945          247 ILSSHLIIDAMGNFSPVVKQI  267 (584)
Q Consensus       247 ~i~ArlVIdADG~~S~v~rql  267 (584)
                      +++|++||||+||..++.+-+
T Consensus       164 ~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         164 TIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             eeeEEEEEeCCCCchHHHHHH
Confidence            799999999999999988755

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.27  E-value=1.2e-09  Score=114.01  Aligned_cols=333  Identities=20%  Similarity=0.232  Sum_probs=178.7

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHH------hCCCeEEEEcCCCCCCCcccc--cCCHHHHHHHHHcCCCcc--cccchhhh
Q 007945          108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVE--DDIDEATA  176 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LA------r~GlrVlLIEr~~~~~~~r~w--~Is~~~l~~L~~lGl~~~--~ele~~i~  176 (584)
                      ++.+||+|||| |+|+++|..|.      .+-+||+|+||...++.+---  -|-+..+++|..  =|.+  .++...+ 
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P--~wke~~apl~t~v-  150 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLP--DWKEDGAPLNTPV-  150 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCc--chhhcCCcccccc-
Confidence            34799999995 68999999753      347899999999987643210  022223333311  0100  0111111 


Q ss_pred             cccCCceeeecC-CCcccc------cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE--EEcC---
Q 007945          177 TKFNPNRCGFEG-KGEIWV------EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAE---  244 (584)
Q Consensus       177 ~~~~~~~v~f~~-~~~l~~------~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V--~~~~---  244 (584)
                         ....+.|-- +..+.+      .+.-|+.|+-..+.++|.++|++.|++|+.+..+.++..++|+.++  .+.|   
T Consensus       151 ---T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI  227 (621)
T KOG2415|consen  151 ---TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI  227 (621)
T ss_pred             ---cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence               111122211 111222      2333678888999999999999999999999999999888776543  3322   


Q ss_pred             ------------CcEEEccEEEEecCCChHHHhHhcCCCCCCcee--eEEEEeee---ccC--CCcceeEEccCC-cccc
Q 007945          245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--LVVGSCAR---GFK--DNSTSDVIYSSS-SVKK  304 (584)
Q Consensus       245 ------------G~~i~ArlVIdADG~~S~v~rql~~~~~~~~~~--~~vg~~a~---g~~--~~~~~di~~~~~-~~~~  304 (584)
                                  |-++.|++-|=|.|-+-.+.+|+-.....+.-|  .+.|....   .++  +..-+++.-..+ |+.+
T Consensus       228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~  307 (621)
T KOG2415|consen  228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN  307 (621)
T ss_pred             cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccC
Confidence                        237999999999999988888753211111101  01111100   011  111122111100 1111


Q ss_pred             cCCC-CceEEEEEccCCCCCCccEEEEEEccCCCCCCc--cHHHHHHHHHhhCcccccccCCceeEEEEEeeeecc---c
Q 007945          305 VGDS-EVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y  378 (584)
Q Consensus       305 ~~~~-~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~--~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~---~  378 (584)
                        +. ++++.   |-..+..  .+.++..-.+  -.+|  +.-+.|+++ +..|.++.+ ++.-+  +..+|...+   .
T Consensus       308 --~tYGGsFl---Yh~~d~~--VavGlVVgLd--Y~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG  374 (621)
T KOG2415|consen  308 --DTYGGSFL---YHFNDPL--VAVGLVVGLD--YKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG  374 (621)
T ss_pred             --CccCceeE---EEcCCCe--EEEEEEEEec--CCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence              10 11221   1222210  2222221111  1123  333334433 355666654 22221  122222211   1


Q ss_pred             cCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhc
Q 007945          379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA  458 (584)
Q Consensus       379 ~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~  458 (584)
                      +++-.+...++=+|||=+|++++=--=-|-..+|.+....|+.|-+|++....+.-..--...|+.|++.+|.+..+.++
T Consensus       375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysv  454 (621)
T KOG2415|consen  375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSV  454 (621)
T ss_pred             cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHh
Confidence            12222566788899999999987554467777788777778999999976542221111145899999999988776665


Q ss_pred             c
Q 007945          459 K  459 (584)
Q Consensus       459 ~  459 (584)
                      +
T Consensus       455 R  455 (621)
T KOG2415|consen  455 R  455 (621)
T ss_pred             h
Confidence            4

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.27  E-value=4.6e-10  Score=117.48  Aligned_cols=66  Identities=21%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH-HhHh
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQI  267 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v-~rql  267 (584)
                      .+|+..+.+.|.+.+++.|++++.+++|+++..++++++ |++.+|+ ++|+.||.|.|.+|.- .+.+
T Consensus       143 ~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~  210 (358)
T PF01266_consen  143 VIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL  210 (358)
T ss_dssp             EEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT
T ss_pred             cccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecc
Confidence            489999999999999999999999999999999999998 9998887 9999999999999875 3444

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.23  E-value=3e-09  Score=118.48  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEccEEEEecCCChH-HHhHh
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI  267 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G----~~i~ArlVIdADG~~S~-v~rql  267 (584)
                      .+|+.+|...+.+.+.+.|++++..++|+++..+++.+.|++.++    .+++|+.||.|+|.+|. +++++
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~  222 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV  222 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence            478899999999999999999999999999988877777776554    36999999999999987 54543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.21  E-value=3.5e-09  Score=118.14  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEccEEEEecCCChH-HHhH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ  266 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~--~i~ArlVIdADG~~S~-v~rq  266 (584)
                      .+|+.+|...+.+.+.+.|++++.+++|+++..+++.+.|++.+   |+  +|+|+.||.|+|.+|. ++++
T Consensus       151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~  222 (508)
T PRK12266        151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD  222 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence            37888888888889999999999999999998877777776653   43  7999999999999986 4444

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.13  E-value=4.2e-10  Score=118.13  Aligned_cols=148  Identities=24%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHH-HHHH-HHcCCCcccccchhhhccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKE-LLEL-VESGILVEDDIDEATATKF  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~w~Is~~~-l~~L-~~lGl~~~~ele~~i~~~~  179 (584)
                      .+||||||| ++|+++|..++++|.+|+|||+.+-.+.+       |+ |++..+ .+.+ ...+= ...-+.+. -.+|
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrC-N~Tn~~~~~~~ls~~p~-~~~fl~sa-l~~f   79 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRC-NFTNSEAPDEFLSRNPG-NGHFLKSA-LARF   79 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCc-cccccccHHHHHHhCCC-cchHHHHH-HHhC
Confidence            689999996 57999999999999999999999977643       11 332211 1111 11110 00000000 0111


Q ss_pred             CCc-eeeecC--CCcccccccccc----eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945          180 NPN-RCGFEG--KGEIWVEDILNL----GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (584)
Q Consensus       180 ~~~-~v~f~~--~~~l~~~~~l~~----~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl  252 (584)
                      .+. .+.|..  +..++..+ ++.    .-+...+.++|..++++.|++++.++++.++..++++..|.+.+|++|+|+-
T Consensus        80 t~~d~i~~~e~~Gi~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~  158 (408)
T COG2081          80 TPEDFIDWVEGLGIALKEED-LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS  158 (408)
T ss_pred             CHHHHHHHHHhcCCeeEEcc-CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence            110 011110  01111111 111    1245568899999999999999999999999999888999999999999999


Q ss_pred             EEEecCCCh
Q 007945          253 IIDAMGNFS  261 (584)
Q Consensus       253 VIdADG~~S  261 (584)
                      ||-|+|..|
T Consensus       159 lilAtGG~S  167 (408)
T COG2081         159 LILATGGKS  167 (408)
T ss_pred             EEEecCCcC
Confidence            999999776

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.04  E-value=5.4e-09  Score=111.63  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC-hHHHhHhcCC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSG  270 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~-S~v~rql~~~  270 (584)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++.+.|.+.++ +++|+.||.|.|.+ |.+++.++..
T Consensus       140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~  210 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIE  210 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccC
Confidence            3589999999999999999999999999999988877888877555 79999888888876 5577766543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.04  E-value=2.9e-09  Score=119.19  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=88.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCcccccchhhhcccCCc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN  182 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~----w~Is~~-~l~~L~~lGl~~~~ele~~i~~~~~~~  182 (584)
                      +|||||||| ++|+.+|+.+|+.|++|+|||++. ..+...+    -++... -++++..+|-......+.. ...+.  
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-giq~r--   80 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GIQFR--   80 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cCcee--
Confidence            699999996 579999999999999999999884 2221110    012221 2333444441100000100 00010  


Q ss_pred             eeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCC
Q 007945          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       183 ~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~  260 (584)
                      ......+...+.+   ...+|+..+...+.+.+.+. |++++ .+.|+++..+++.+. |.+.+|.++.|+.||+|+|.+
T Consensus        81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            0000001112211   12588999999999999877 56765 567888887777665 777889999999999999976


Q ss_pred             h
Q 007945          261 S  261 (584)
Q Consensus       261 S  261 (584)
                      +
T Consensus       157 L  157 (618)
T PRK05192        157 L  157 (618)
T ss_pred             h
Confidence            5

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.03  E-value=5.6e-09  Score=112.57  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEccEEEEecCCChH-HHhHhcCC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~-i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      ..||+..+-..|.+.+.++|+++..+++|++++.++|+ ..+.+.+|++ ++||.||.|.|..|. +++..+..
T Consensus       148 giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~  221 (429)
T COG0579         148 GIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIP  221 (429)
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCC
Confidence            35899999999999999999999999999999999985 5566777766 999999999999886 66666543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.01  E-value=9.7e-09  Score=110.73  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      ..+++..+.+.|.+.+.+.|++++.+++|.++..+++++.|++.+| +++|+.||.|+|.+|. +++.++.
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~  213 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL  213 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence            3578999999999999999999999999999988877888887666 7999999999999995 5665653

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.00  E-value=3.3e-09  Score=114.80  Aligned_cols=148  Identities=24%  Similarity=0.279  Sum_probs=73.9

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHH--HHHHHHcCCC-cccccchhhhccc
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKE--LLELVESGIL-VEDDIDEATATKF  179 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~w~Is~~~--l~~L~~lGl~-~~~ele~~i~~~~  179 (584)
                      |||+|||| ++|+++|..+|+.|++|+|+||++..+.+       |+ |++...  ...+..- .- ...-+... -..|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~-~~~~~~f~~~~-l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSG-YGRNPKFLKSA-LKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS--TBTTTCTHHH-HHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhh-cccchHHHHHH-HhcC
Confidence            89999996 57999999999999999999999876531       11 111000  0000000 00 00000000 0001


Q ss_pred             CCc-eeeecC--CCcccc-cccccce--eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccE
Q 007945          180 NPN-RCGFEG--KGEIWV-EDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL  252 (584)
Q Consensus       180 ~~~-~v~f~~--~~~l~~-~~~l~~~--vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~Arl  252 (584)
                      ++. .+.|..  +-++.. ++..-+.  -....+.+.|.+++.+.|++++.+++|.++..++++ +.|++++++++.|+-
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence            000 000100  000000 0000011  134567889999999999999999999999998887 778887788999999


Q ss_pred             EEEecCCCh
Q 007945          253 IIDAMGNFS  261 (584)
Q Consensus       253 VIdADG~~S  261 (584)
                      ||-|+|..|
T Consensus       158 vILAtGG~S  166 (409)
T PF03486_consen  158 VILATGGKS  166 (409)
T ss_dssp             EEE----SS
T ss_pred             EEEecCCCC
Confidence            999999887

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.99  E-value=1.3e-08  Score=108.52  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+++.++...+.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence            478889999898899889999999999999998888888887666 7999999999999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.95  E-value=3.6e-07  Score=98.87  Aligned_cols=69  Identities=10%  Similarity=0.001  Sum_probs=51.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE-EEEEcCCcEEEcc-EEEEecCCChHHHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv-~V~~~~G~~i~Ar-lVIdADG~~S~v~rql~~~  270 (584)
                      .+++..+...|.+.+.+.|++++.+++|+++... ++.+ .|++.+| +++|+ +||+|.|..|.+++.++..
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~  250 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR  250 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence            4688888888999999999999999999999764 3443 3666556 68887 5566677667777765543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.95  E-value=9.8e-09  Score=109.51  Aligned_cols=140  Identities=19%  Similarity=0.209  Sum_probs=84.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEE-cCCCCCCCccc----ccCCHHHH-HHHHHcCCCcccccchhhhcccCCcee
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKEL-LELVESGILVEDDIDEATATKFNPNRC  184 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLI-Er~~~~~~~r~----w~Is~~~l-~~L~~lGl~~~~ele~~i~~~~~~~~v  184 (584)
                      |||||||| +|+.+|+++|+.|++|+|+ ++....+...+    -.+.+..+ .++..+|-+    +-.. .   +...+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~-a---D~~~i   72 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRA-A---DETGI   72 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHH-H---HHHEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHH-H---hHhhh
Confidence            89999976 7999999999999999999 33322221111    12344333 445455521    1000 0   01112


Q ss_pred             eecCCCcccccccc--cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCC
Q 007945          185 GFEGKGEIWVEDIL--NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       185 ~f~~~~~l~~~~~l--~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~  259 (584)
                      .|.-...--.|.+.  ...+|+..+.+.+.+.+.+.+...+..++|+++..+++.+. |.+.+|..+.|+.||.|+|.
T Consensus        73 ~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   73 HFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             EEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             hhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            22110000001222  24699999999999999987664445679999999888765 88889999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.91  E-value=4.4e-08  Score=108.58  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEc---CC--cEEEccEEEEecCCChH-HHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      .||+..+.+.|.+.+.+.|++++.+++|+++..+++ ++.|++.   +|  .+++|+.||-|.|.+|. +++.++..
T Consensus       174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence            589999999999999999999999999999987654 5666542   23  36999999888777765 77777654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.90  E-value=3.8e-08  Score=109.26  Aligned_cols=71  Identities=11%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             ceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe-EEEEEc---CCc--EEEccEEEEecCCChH-HHhHhcCC
Q 007945          200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~g-v~V~~~---~G~--~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      ..||+..+.+.|.+.+++.| ++++.+++|+++..++++ +.|++.   +|+  +++|+.||.|.|.+|. ++++++..
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            35899999999999999887 699999999999886664 666543   353  6999988877776665 77666543

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.88  E-value=2.8e-08  Score=107.64  Aligned_cols=67  Identities=19%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-----cEEEccEEEEecCCChH-HHhHhc
Q 007945          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-----~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      +++.++...|.+.+.+.|++++.+++|+++..+++++++.+.++     .+++|+.||.|.|.+|. +.+.++
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~  266 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG  266 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence            67888889999999999999999999999988777777665432     37999999999999986 555544

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.88  E-value=6.8e-10  Score=121.22  Aligned_cols=147  Identities=18%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc----CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN----ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~----Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ||||||| ++|+++|..+|+.|++|+||||....|....-.    +..........-|++.  ++...+.. ....  ..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~--e~~~~~~~-~~~~--~~   75 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFR--EFLNRLRA-RGGY--PQ   75 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHH--HHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHH--HHHHHHhh-hccc--cc
Confidence            8999996 568888889999999999999999865321000    0000000000001100  00000000 0000  00


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--C-CcEEEccEEEEecCCChH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--E-GKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~-G~~i~ArlVIdADG~~S~  262 (584)
                      .. ..-+   .....+++..+...|.+.+.++|++++.++.+.++..+++.++ |.+.  + ..+|+|+++|||+|. ..
T Consensus        76 ~~-~~~~---~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~  150 (428)
T PF12831_consen   76 ED-RYGW---VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD-GD  150 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            00 0000   0013467778888888888889999999999999998875433 4443  3 457999999999995 45


Q ss_pred             HHhHhc
Q 007945          263 VVKQIR  268 (584)
Q Consensus       263 v~rql~  268 (584)
                      ++...+
T Consensus       151 l~~~aG  156 (428)
T PF12831_consen  151 LAALAG  156 (428)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            554443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.87  E-value=2.5e-08  Score=114.88  Aligned_cols=61  Identities=20%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+++..+.+.|.+.+.+ |++++.+++|+++..++++++|.+.+|..++|+.||.|+|.+|.
T Consensus       404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            47899999999999988 99999999999999888888888877877899999999999986

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.86  E-value=2.8e-08  Score=111.88  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCChH-HHhHhc
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      ..+|+.+|...+.+.+.++|++++.+++|+++..+++.++ |++.   ++  .+|+|+.||.|.|.+|. +.+.++
T Consensus       144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g  219 (546)
T PRK11101        144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD  219 (546)
T ss_pred             cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence            3589999999999999999999999999999988776543 4442   23  47999999999999997 555443

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.83  E-value=1.8e-08  Score=97.89  Aligned_cols=136  Identities=17%  Similarity=0.216  Sum_probs=77.6

Q ss_pred             EEEc-chHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCC-ceeeecCCC
Q 007945          114 IVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGFEGKG  190 (584)
Q Consensus       114 VIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~-~~v~f~~~~  190 (584)
                      +||| |++|+++|+.|.++|++ |++|||+..++..  |.-+..      ...+.+......  ....+. ..+.+....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~--w~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   70 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV--WRRYYS------YTRLHSPSFFSS--DFGLPDFESFSFDDSP   70 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH--HHCH-T------TTT-BSSSCCTG--GSS--CCCHSCHHHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe--eEEeCC------CCccccCccccc--cccCCcccccccccCC
Confidence            6888 56799999999999999 9999999766532  321000      001111000000  000000 000000000


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ...   ..........+.+.|.+.+.+.+..++.+++|+++..++++++|++.++++++|+.||.|+|..|.
T Consensus        71 ~~~---~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   71 EWR---WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHH---HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             CCC---CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            000   001124566778888888888898999999999999999999999998989999999999998653

...

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.82  E-value=3.7e-08  Score=108.55  Aligned_cols=61  Identities=18%  Similarity=0.315  Sum_probs=51.9

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+++.++...|.+.+.+.|++++++++|++++. ++.+.|++.+| +++|+.||-|.|.+|.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            3589999999999999999999999999999874 45566777656 6999999999998864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.78  E-value=1.8e-07  Score=103.76  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             eeCHHHHHHHHHHHHHh----CC--CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~----~G--~~i~~~t~v~~v~~~-~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      .||+..+.+.+.+.+++    .|  ++++.+++|+++..+ ++.+.|++.+| +++|+.||-|.|.+|. +++.++.+
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~  283 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG  283 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence            58999999999999988    77  679999999999887 44567887666 6999999999999986 77777654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.75  E-value=1.1e-07  Score=97.65  Aligned_cols=111  Identities=22%  Similarity=0.331  Sum_probs=80.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      |||+|||| ++|+++|..|++.|++|+|||+....+.   |...                   .. ...+       .+ 
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------------~~-~~~~-------~~-   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT-------------------TE-VENY-------PG-   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec-------------------cc-cccc-------CC-
Confidence            79999996 5799999999999999999998863221   1000                   00 0000       00 


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                              +...+....+...+.+.+++.|++++. ++|++++.+++.+.|++.+++++++|.||-|+|...
T Consensus        50 --------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        50 --------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             --------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence                    000123345667777888888999888 899999887777888887888999999999999865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.75  E-value=2.4e-06  Score=94.30  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEccEEEEecCCChHH-HhHh
Q 007945          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSPV-VKQI  267 (584)
Q Consensus       199 ~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~--~i~ArlVIdADG~~S~v-~rql  267 (584)
                      ++.+|..+|.-.....|.+.|++++..++|+++..+++.+-|.+.|   |+  +|+|+.||.|.|.++-- ++..
T Consensus       158 D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~  232 (532)
T COG0578         158 DGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA  232 (532)
T ss_pred             cceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence            3468888999999999999999999999999999988733455544   33  69999999999999984 4444

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.72  E-value=4.4e-06  Score=95.55  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEE---cCCc--EEEccEEEEecCCChH-HHhHhc
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~gv~-V~~---~~G~--~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      .+|+..+...|.+.+.+.|++++..++|+++..++  +.++ |++   .+++  +++|+.||.|+|.+|. +++.++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            47999999999999999999999999999998763  4332 343   2343  6899999999999997 555554

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.72  E-value=4.1e-07  Score=100.79  Aligned_cols=69  Identities=10%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             eeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEe-CCeEEEEE---cCCc--EEEccEEEEecCCChH-HHhHhcC
Q 007945          201 GVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~-~~gv~V~~---~~G~--~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      .||...+.+.|.+.+.+ .|++++.+++|+++... +++++|++   .+++  +++|++||-|.|.+|. +++.++.
T Consensus       180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi  256 (497)
T PRK13339        180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI  256 (497)
T ss_pred             ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence            48999999999999865 48999999999999877 66777763   3342  6999999999988886 6666654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.71  E-value=6.4e-07  Score=98.78  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       199 ~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      +-.+||..+-.+|...|.+.|+.|.+++.|+++....+. +-|++..| .|+|..+|+|.|.+..-...
T Consensus       181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~  248 (856)
T KOG2844|consen  181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGA  248 (856)
T ss_pred             CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhh
Confidence            345899999999999999999999999999999887664 34766555 49999999999999864433

>PLN02661 Putative thiazole synthesis

Probab=98.70  E-value=3.2e-07  Score=96.71  Aligned_cols=130  Identities=17%  Similarity=0.306  Sum_probs=81.4

Q ss_pred             CccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhcc
Q 007945          110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK  178 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~  178 (584)
                      ++||+||||| +|+++|..|+++ |++|+||||...++. ..|.         +.....+.|.++|+.            
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG-G~~~gg~l~~~~vv~~~a~e~LeElGV~------------  158 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHLFLDELGVP------------  158 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc-ceeeCcccccccccccHHHHHHHHcCCC------------
Confidence            6899999965 699999999976 999999999876542 1121         101112233333321            


Q ss_pred             cCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE---EEE----EcC--C---
Q 007945          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLL----LAE--G---  245 (584)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv---~V~----~~~--G---  245 (584)
                             |.....      +....+...+.+.|.+++.+ .|++++.++.++++..+++.+   ++.    ..+  +   
T Consensus       159 -------fd~~dg------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~  225 (357)
T PLN02661        159 -------YDEQEN------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC  225 (357)
T ss_pred             -------cccCCC------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence                   110000      00111233445667776665 688999999999998876643   221    111  1   


Q ss_pred             ---cEEEccEEEEecCCChHHHh
Q 007945          246 ---KILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       246 ---~~i~ArlVIdADG~~S~v~r  265 (584)
                         ..|+|+.||.|+|+..++..
T Consensus       226 ~dp~~I~AkaVVlATGh~g~~ga  248 (357)
T PLN02661        226 MDPNVMEAKVVVSSCGHDGPFGA  248 (357)
T ss_pred             cceeEEECCEEEEcCCCCCcchh
Confidence               26999999999998887654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.66  E-value=2.9e-07  Score=103.10  Aligned_cols=113  Identities=25%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..+|||+|||| ++|+++|..|++.|++|+|||+. ..+.   |.-+         .+      ++.            +
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~~---------~~------~~~------------~  257 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLDT---------MG------IEN------------F  257 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eecc---------Cc------ccc------------c
Confidence            44699999996 57999999999999999999864 2221   1000         00      000            0


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .     ..+     ..+...+.+.+.+++++.|++++.++++.++..+++.+.|++.+|.+++++.||.|+|..+
T Consensus       258 ~-----~~~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        258 I-----SVP-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             C-----CCC-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            0     000     0234567788888898999999999999999887778888888888999999999999976

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.66  E-value=5.5e-07  Score=97.53  Aligned_cols=67  Identities=12%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhHhc
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      .+++..+...|.+.+.+.|++++.+++|++++.+++++. |++. +.+++|+.||.|.|.+|. +.+.++
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g  265 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG  265 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence            468888999999999999999999999999988777754 5554 457999999999999986 444443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.66  E-value=2.3e-07  Score=104.03  Aligned_cols=141  Identities=17%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCcc----cccCCHHH-HHHHHHcCCCcccccchhhh---cccC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQ----EWNISRKE-LLELVESGILVEDDIDEATA---TKFN  180 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~r----~w~Is~~~-l~~L~~lGl~~~~ele~~i~---~~~~  180 (584)
                      ||||||||| +|+.+|..+|+.|.+|+|||++... +...    ..++.... .+++..+|=.    +..+..   ..|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence            799999965 7999999999999999999987532 1110    01111111 2233333210    001110   0110


Q ss_pred             CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEe-CCe-EEEEEcCCcEEEccEEEEec
Q 007945          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~-~~g-v~V~~~~G~~i~ArlVIdAD  257 (584)
                      ....+ . +...+.+   ...+|+..+...+.+.+.+.+ ++++ ...++++..+ ++. +.|.+.+|..+.|+.||.|+
T Consensus        77 ~ln~s-k-gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT  150 (617)
T TIGR00136        77 VLNSS-K-GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT  150 (617)
T ss_pred             ecccC-C-CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence            00000 0 1112221   235899999999999999885 4665 4578887665 443 34777788899999999999


Q ss_pred             CCCh
Q 007945          258 GNFS  261 (584)
Q Consensus       258 G~~S  261 (584)
                      |.++
T Consensus       151 GtfL  154 (617)
T TIGR00136       151 GTFL  154 (617)
T ss_pred             Cccc
Confidence            9995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.64  E-value=5.9e-07  Score=101.11  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEE-----EcCC-cEEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~-----~~~G-~~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++++.|++++.++.++++..+++    ++.+.     ..++ .++.|+.||.|+|..|.+
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~  212 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL  212 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence            45778888999889999999999999987654    33343     1233 369999999999998853

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.61  E-value=1.1e-06  Score=98.19  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEEcCC--cEEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEG--KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g---v~V~~~~G--~~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.|.+.+++.|++++.+++++++..+++.   +++...++  .+++|+.||.|+|..+.
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            457778888898999999999999999876554   33443443  36999999999997664

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.60  E-value=4.1e-07  Score=96.81  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+|+..+...|.+.+.+. |++++.+++|+++..  +  .|++.+| +++|+.||-|+|.+|.
T Consensus       141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE  198 (365)
T ss_pred             eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence            489999999999988775 999999999999853  2  5666555 4789999999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.58  E-value=1.2e-06  Score=96.58  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCC--cEEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~--~~G--~~i~ArlVIdADG~~S~  262 (584)
                      ..+...|.+++++.|++++.+++++++..+++.++ |.+  .++  .+++|+.||.|+|..+.
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            45778888899999999999999999987666543 333  233  36899999999997654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.58  E-value=1.2e-06  Score=99.82  Aligned_cols=153  Identities=16%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcc----cccC--------CHHH-HHHHHHc--CCCccccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI  171 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r----~w~I--------s~~~-l~~L~~l--Gl~~~~el  171 (584)
                      ++||||||| ++|+++|+.+++.  |.+|+||||....+...    .+.+        +.+. .+.+...  ++.++.-+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            589999996 5799999999998  99999999987543211    1111        1111 1111111  11111000


Q ss_pred             chhhh-----ccc-CCceeeecC--CCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-E-
Q 007945          172 DEATA-----TKF-NPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-L-  240 (584)
Q Consensus       172 e~~i~-----~~~-~~~~v~f~~--~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~-V-  240 (584)
                      +..+.     .+| ....+.|..  ...+.........++...+.+.|.+.+.+.| ++++.++.++++..+++.++ | 
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~  170 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV  170 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence            00000     000 000122211  0011100000011345567788888888876 89999999999987666432 2 


Q ss_pred             --EEcCCc--EEEccEEEEecCCChH
Q 007945          241 --LLAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       241 --~~~~G~--~i~ArlVIdADG~~S~  262 (584)
                        ...+++  .++|+.||.|+|..+.
T Consensus       171 ~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        171 GFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEccCCcEEEEECCEEEECCCchhh
Confidence              233453  6999999999998774

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.57  E-value=1.1e-06  Score=99.59  Aligned_cols=60  Identities=15%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EE---EcCCc--EEEccEEEEecCCChHHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~---~~~G~--~i~ArlVIdADG~~S~v~  264 (584)
                      ..+...|.+++.+.|++++.++.++++..+++.++ |.   ..+|+  .+.|+.||.|+|..|.+.
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~  194 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY  194 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence            35677888888888999999999999988766543 22   23454  699999999999988543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.56  E-value=3.8e-07  Score=98.84  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             EEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCCHH-HHHHH-HHcCCCcccccchhhhcccCCc-e
Q 007945          114 IVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNISRK-ELLEL-VESGILVEDDIDEATATKFNPN-R  183 (584)
Q Consensus       114 VIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r------~w~Is~~-~l~~L-~~lGl~~~~ele~~i~~~~~~~-~  183 (584)
                      ||||| ++|+++|+.++++|++|+|+||++..+.+-      ..+++.. ....+ ...+- ....+... ...|+.. .
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~d~   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSA-LSRFSNKDL   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHH-HHhCCHHHH
Confidence            57785 579999999999999999999998655320      1122110 01111 11110 00000000 0111100 0


Q ss_pred             eeecC--CCccccc---ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          184 CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       184 v~f~~--~~~l~~~---~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      +.|..  +-++...   ..+...-....+.+.|.+.+++.|++++.++.|+++..+++.+.|++ +++++.|+.||.|+|
T Consensus        79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence            00000  0000000   00101112456778888899889999999999999987777777776 566899999999999


Q ss_pred             CCh-----------HHHhHhcC
Q 007945          259 NFS-----------PVVKQIRS  269 (584)
Q Consensus       259 ~~S-----------~v~rql~~  269 (584)
                      ..|           .++++++.
T Consensus       158 ~~s~p~~gs~G~g~~la~~lG~  179 (400)
T TIGR00275       158 GLSYPQLGSTGDGYEIAESLGH  179 (400)
T ss_pred             CcccCCCCCCcHHHHHHHHCCC
Confidence            987           56666654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.54  E-value=1.8e-06  Score=93.64  Aligned_cols=63  Identities=22%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChH-HHhH
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQ  266 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~-v~rq  266 (584)
                      -..+...|.+.++++|++++.++.++++..+++.|+ |...   +|+  +|+|+-||-|+|..+. +.++
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~  209 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQ  209 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHH
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccccc
Confidence            456888999999999999999999999999887654 3333   454  6899999999999995 5544

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR00551 nadB L-aspartate oxidase

Probab=98.53  E-value=1.6e-06  Score=96.49  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC-C--cEEEccEEEEecCCChHH
Q 007945          204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       204 ~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~~-G--~~i~ArlVIdADG~~S~v  263 (584)
                      ...+.+.|.+++.+ .|++++.++.++++..+++.++ |.+.+ +  .+++|+.||.|+|..|.+
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            45678888998887 5899999999999987665544 43332 3  369999999999999974

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=9.3e-07  Score=92.17  Aligned_cols=114  Identities=25%  Similarity=0.337  Sum_probs=79.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|||+|||| |+|+++|..++|+|++ ++++|+....+....+                      . ....|    ..|.
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~----------------------~-~veny----pg~~   55 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT----------------------T-DVENY----PGFP   55 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc----------------------e-eecCC----CCCc
Confidence            699999995 6799999999999999 6777765443211000                      0 00111    1111


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      +            .+.-..|.+.+.+++...|+++.. ..+.+++..++..+|++.++. ++||.||-|+|....--
T Consensus        56 ~------------~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          56 G------------GILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             c------------CCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            1            133456788888999888998877 778887766657788887777 99999999999987544

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.53  E-value=9.9e-07  Score=90.69  Aligned_cols=168  Identities=19%  Similarity=0.232  Sum_probs=100.3

Q ss_pred             CCCccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCCc---cc-ccCCHHH-------------HHHHHHc------
Q 007945          108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE---QE-WNISRKE-------------LLELVES------  163 (584)
Q Consensus       108 ~~~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---r~-w~Is~~~-------------l~~L~~l------  163 (584)
                      ...+||||||+|+ |+++|..||++|.++++||+-+++...   .. -.|-+.+             .+....+      
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~   84 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV   84 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence            3468999999875 999999999999999999999876421   00 0111111             0100000      


Q ss_pred             ------CCCc---c--cccchh--------h----------hcccCCceeeecCCCcccccccccceeCHHHHHHHHHHH
Q 007945          164 ------GILV---E--DDIDEA--------T----------ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR  214 (584)
Q Consensus       164 ------Gl~~---~--~ele~~--------i----------~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~  214 (584)
                            +++.   .  .+++++        +          ..+|+. .+.+..+. ..+-+..+-.+...+-+..+...
T Consensus        85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~-~G~~n~~gGvi~a~kslk~~~~~  162 (399)
T KOG2820|consen   85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGW-QGVVNESGGVINAAKSLKALQDK  162 (399)
T ss_pred             eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcch-hhcccccccEeeHHHHHHHHHHH
Confidence                  0000   0  001110        0          111111 22222111 11112223347788889999999


Q ss_pred             HHhCCCEEEeCceEEEEEE---eCCeEEEEEcCCcEEEccEEEEecCCChH-HH-hHhcCCCCCCcee
Q 007945          215 FISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNFSP-VV-KQIRSGRKPDGVC  277 (584)
Q Consensus       215 a~~~G~~i~~~t~v~~v~~---~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~-rql~~~~~~~~~~  277 (584)
                      +++.|+.++.+..+..+..   ++.++.|.+.+|..+.|+-+|-+.|.+-. +. ..++++.+...+.
T Consensus       163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~  230 (399)
T KOG2820|consen  163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQ  230 (399)
T ss_pred             HHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeE
Confidence            9999999999999988864   33467888889999999999999998732 21 1234444444443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.52  E-value=1.2e-06  Score=98.14  Aligned_cols=113  Identities=25%  Similarity=0.352  Sum_probs=81.1

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ...|||+|||| ++|+++|..|++.|++|+|||+. ..+...  .          ..+      ++            .+
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~----------~~~------~~------------~~  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D----------TVG------IE------------NL  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c----------CcC------cc------------cc
Confidence            34699999996 57999999999999999999753 222100  0          000      00            00


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .+     .+.     .....+.+.+.+.+.+.|++++.+++|+++..+++.+.|++.+|.+++++.||.|+|...
T Consensus       259 ~~-----~~~-----~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       259 IS-----VPY-----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             cc-----cCC-----CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            00     000     123456777788888889999999999999887777888888888999999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.50  E-value=2e-06  Score=97.59  Aligned_cols=60  Identities=13%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHHH
Q 007945          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v~  264 (584)
                      ..+...|.+++.+. +++++.++.++++..+++.+.    +...+|+  .++|+.||.|+|..|.+-
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~  199 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  199 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence            35677788887775 789999999999988766543    2334563  799999999999998753

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.49  E-value=2e-06  Score=94.18  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEcCCc--EEEccEEEEecCCChH
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      +...+.+.|.+++.+.|++++.+++++++..+++    ++++...+++  .+.|+.||-|+|..|.
T Consensus       128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            3456888899999999999999999999988654    2334433444  4789999999998886

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.49  E-value=2.6e-06  Score=93.39  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EE-EcCCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LL-LAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~-~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.|.+++++ .|++++.+++++++..+++.+. |. ..+++  ++.|+-||.|+|..+.
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence            4567778888775 4899999999999987666432 22 22443  6999999999998664

>PRK07121 hypothetical protein; Validated

Probab=98.47  E-value=5e-06  Score=92.53  Aligned_cols=59  Identities=20%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEEc-CCc--EEEc-cEEEEecCCChH
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLLA-EGK--ILSS-HLIIDAMGNFSP  262 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~~~-~G~--~i~A-rlVIdADG~~S~  262 (584)
                      ...+.+.|.+++++.|++++.+++++++..+++ .++ |... +++  +++| +.||.|+|..+.
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            456788899999999999999999999987654 332 3332 332  6899 999999998874

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.47  E-value=2.7e-06  Score=97.16  Aligned_cols=58  Identities=10%  Similarity=0.253  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEE-EE---EcCCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAV-LL---LAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~-V~---~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+...|.+++.+.|++++.++.++++.. +++.+. |.   ..+|+  .++|+.||.|+|..+.
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            46788899999999999999999999987 344332 22   23454  6899999999998764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.46  E-value=2.8e-06  Score=96.44  Aligned_cols=59  Identities=17%  Similarity=0.363  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+.|++++.++.++++..+++.+.    +...+|+  .++|+.||.|+|..+.+
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            45778888888888999999999999987665432    2233554  69999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.46  E-value=1.9e-06  Score=97.29  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .|||+|||| ++|+++|..|+++|++|+|||+....+...   ..                   ..+ .       .+.+
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~---~~-------------------~~i-~-------~~pg   53 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQIT---IT-------------------SEV-V-------NYPG   53 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEE---ec-------------------ccc-c-------cCCC
Confidence            699999996 579999999999999999999875433110   00                   000 0       0000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .          ..+....+.+.+.+.+.+.|++++ .++|+++..+++...|.+.++ ++.++.||-|+|..+.
T Consensus        54 ~----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        54 I----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR  115 (555)
T ss_pred             C----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence            0          012334566777778888898875 678888887666667777555 6899999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.43  E-value=3.3e-06  Score=93.11  Aligned_cols=145  Identities=13%  Similarity=0.099  Sum_probs=86.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhccc-------CC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-------NP  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~-------~~  181 (584)
                      ..+|+|||| ++|+++|..|++.|++|+++||+...|  ..|+.+...-.  ..+++-.....  .....|       +.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~   83 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence            579999996 579999999999999999999998665  23443221100  00111000000  000011       00


Q ss_pred             ceeeecC---CCccc-c-cccccceeCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCCeEEEEEcCC--c--EEEc
Q 007945          182 NRCGFEG---KGEIW-V-EDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSS  250 (584)
Q Consensus       182 ~~v~f~~---~~~l~-~-~~~l~~~vd~~~L~~~L~~~a~~~G~~--i~~~t~v~~v~~~~~gv~V~~~~G--~--~i~A  250 (584)
                      ....|.+   ..... . .+...+ .....+.+.|.+.+...|..  |..+++|+++...++.++|++.++  .  +..+
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~  162 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF  162 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence            0111211   00000 0 000001 23567888999999888886  899999999988888898887642  2  4678


Q ss_pred             cEEEEecCCCh
Q 007945          251 HLIIDAMGNFS  261 (584)
Q Consensus       251 rlVIdADG~~S  261 (584)
                      |.||-|+|+.+
T Consensus       163 d~VIvAtG~~~  173 (461)
T PLN02172        163 DAVVVCNGHYT  173 (461)
T ss_pred             CEEEEeccCCC
Confidence            99999999865

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.42  E-value=4.3e-06  Score=95.23  Aligned_cols=58  Identities=12%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EE---EcCCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL---LAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~---~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+...|.+++.+.|++++.++.++++..++++ ++ |.   ..+|+  .|.|+-||-|+|..+.
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            357788888888889999999999999876532 32 22   23554  6999999999999875

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.42  E-value=3.5e-06  Score=95.67  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE---E-EEcCCc--EEEccEEEEecCCChHH
Q 007945          206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       206 ~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~---V-~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      .+.+.|.+++.+ .|++++.++.++++..+++.++   + ...+|+  .++|+.||.|+|..+.+
T Consensus       138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence            466777887766 5899999999999987766432   2 223554  58999999999998754

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.41  E-value=6e-06  Score=93.70  Aligned_cols=59  Identities=12%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+. +++++.++.++++..+++.+.    +...+|+  .++|+.||.|+|..|.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            45778888888765 789999999999988766443    2233553  69999999999999865

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.39  E-value=4.8e-06  Score=88.98  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          201 GVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      .+++..+.+.|.+.+.+.|+ .+..++.+..+......+.|.+.+|+ +.|+.||-|.|.+|...
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l  215 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGEL  215 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence            48899999999999999995 66678999888764245677776676 99999999999998744

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.38  E-value=7.6e-06  Score=92.68  Aligned_cols=59  Identities=12%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+.|++++.++.++++..+++.++ |.+.   +++  .++|+-||-|+|..+.+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence            35677888888888999999999999998766443 3222   333  68999999999988743

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=9.7e-06  Score=92.27  Aligned_cols=59  Identities=12%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~~---~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+...|.+++.+.|++++.++.++++..+++ .+. |.+   .+|+  .+.|+-||.|+|..+.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            35778888888888999999999999987643 232 222   2454  68999999999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.34  E-value=7.5e-06  Score=93.74  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+...|.+++.+.|++++.++.++++..++ +.+. |.+   .+|+  .|.|+-||.|+|..+.+
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            4577888888888899999999999988763 4332 222   2454  68999999999998753

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.34  E-value=5.8e-06  Score=91.42  Aligned_cols=152  Identities=21%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCC--------HH-HH-HHHHHc-CCCcccccchhhh
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNIS--------RK-EL-LELVES-GILVEDDIDEATA  176 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r--~w~Is--------~~-~l-~~L~~l-Gl~~~~ele~~i~  176 (584)
                      +||||||| ++|+++|+.++++|.+|+||||.+..+...  ..+|.        .+ .+ +.+..- ++.++.-++..+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            79999996 579999999999999999999986432110  01111        00 01 111111 1111110111000


Q ss_pred             -----ccc-CCceeeecCCC---cccccccccc-eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 007945          177 -----TKF-NPNRCGFEGKG---EIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG  245 (584)
Q Consensus       177 -----~~~-~~~~v~f~~~~---~l~~~~~l~~-~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G  245 (584)
                           .+| ....+.|....   .-..+..+.. ......+.+.|.+++.+.|++++.. .++.+..+++.++ |.+ ++
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g  159 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG  159 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence                 000 00012221100   0000111000 0123467888999998899998876 7888876665554 444 56


Q ss_pred             cEEEccEEEEecCCChHHH
Q 007945          246 KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       246 ~~i~ArlVIdADG~~S~v~  264 (584)
                      +.++|+-||-|+|..|.+.
T Consensus       160 ~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        160 ELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             EEEEeCeEEECCCcCcCCC
Confidence            7899999999999999764

>PRK07233 hypothetical protein; Provisional

Probab=98.33  E-value=0.00087  Score=72.69  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .+.+.|.+.+.+.|++|+.+++|++++.+++++++...++++++|+.||-|....
T Consensus       199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            3567777888888999999999999998888776555677889999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=8.6e-06  Score=93.42  Aligned_cols=56  Identities=9%  Similarity=0.201  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChHH
Q 007945          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       208 ~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~v  263 (584)
                      .+.|.+++.+.|++++.++.++++..+++.++ |.+.   +|+  .+.|+.||.|+|..+.+
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence            35666677788999999999999987766443 3332   453  69999999999997753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.31  E-value=9.2e-06  Score=91.56  Aligned_cols=58  Identities=16%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EE--E-cCCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL--L-AEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~--~-~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+...|.+++.+.|++++.++.++++..++++ ++ |.  . .+|+  .++|+-||.|+|..+.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            456778888888889999999999999887664 32 22  2 3454  6999999999999874

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.30  E-value=1.3e-05  Score=87.88  Aligned_cols=56  Identities=18%  Similarity=0.212  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChH
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      |-+.+.+.++..|++++.+++|.+|..++++  +.|++++|++++|+.||......+.
T Consensus       234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            4456666677789999999999999887654  4578889999999999986555543

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.28  E-value=1.4e-05  Score=90.91  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC----CeE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~----~gv---~V-~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+.|++++.++.++++..++    +.+   ++ ...+|+  .++|+-||.|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            4577888898988999999999999998765    322   22 223454  68999999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=98.28  E-value=1.5e-05  Score=90.12  Aligned_cols=59  Identities=8%  Similarity=0.129  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv---~V-~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+.|++++.++.++++..+ ++.+   .+ ...+|+  .++|+.||.|+|..+.+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            357788888898899999999999999876 3322   22 123454  58999999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.26  E-value=6.7e-06  Score=90.40  Aligned_cols=137  Identities=20%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| |+|.++|..+|++|++|+|+|+....|....++ +..+.+-.-.  .+..  .++..  ..|.   +...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~~~--~~~~~--~~~g---~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TFGG--EFEDA--AGYG---WTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HHHH--HHhhh--HhcC---cCCC
Confidence            699999996 568888889999999999999976555322111 2222111000  0000  00000  0000   0000


Q ss_pred             CCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       ...+..+..... .+  -..+.+.+.+.+.+.|++++.+ ++..+  +.+.+.|. .+|++++++.||-|+|...
T Consensus        73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p  142 (446)
T TIGR01424        73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP  142 (446)
T ss_pred             -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence             001111111000 00  1123445566677789988776 45444  33445554 3577899999999999764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.25  E-value=6.3e-06  Score=91.26  Aligned_cols=141  Identities=18%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..|||||||| |+|+++|..|+++|++|+|||+....|....++ |..+.+-....  +..  ....  ...+   .+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~--~~~--~~~~--~~~~---g~~~   73 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAE--VFQ--TAKK--ASPF---GISV   73 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHH--HHH--HHHH--HHhc---CccC
Confidence            3699999996 568888889999999999999986655432222 33222211000  000  0000  0000   0000


Q ss_pred             cCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-----CCeEEEEEcCC--cEEEccEEEEec
Q 007945          187 EGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAM  257 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-----~~gv~V~~~~G--~~i~ArlVIdAD  257 (584)
                      . ...+..+..... .+  .+.+.+...+.+++.|++++.+. ++.++.+     ++.+.|.+.+|  .++++|.||-|+
T Consensus        74 ~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViAT  150 (472)
T PRK05976         74 S-GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIAT  150 (472)
T ss_pred             C-CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeC
Confidence            0 000110010000 00  01233334455566788988874 3444322     22677877676  479999999999


Q ss_pred             CCCh
Q 007945          258 GNFS  261 (584)
Q Consensus       258 G~~S  261 (584)
                      |...
T Consensus       151 Gs~p  154 (472)
T PRK05976        151 GSRP  154 (472)
T ss_pred             CCCC
Confidence            9875

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.25  E-value=2.1e-05  Score=90.04  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=31.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +||||||||| +|+++|..+++.|.+|+||||.+..+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            6899999965 79999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.25  E-value=8.2e-06  Score=89.98  Aligned_cols=138  Identities=25%  Similarity=0.239  Sum_probs=72.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhh-hcccCCceee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v~  185 (584)
                      .+|||||||| |+|+++|..++++|++|+||||....|....++ +..+.+....  .+     .+... ...|.   +.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~--~~-----~~~~~~~~~~g---~~   72 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAA--ER-----ADEARHSEDFG---IK   72 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhh--hH-----HHHHHHHHhcC---cc
Confidence            3699999996 568888889999999999999987555322122 2222211100  00     00000 00010   00


Q ss_pred             ecCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCCh
Q 007945          186 FEGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS  261 (584)
Q Consensus       186 f~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S  261 (584)
                      .. ...+.......+ .+  .+.+...+...+.+.|++++.++. +.  .++..++|...+ ++++++|.||-|+|...
T Consensus        73 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p  146 (462)
T PRK06416         73 AE-NVGIDFKKVQEW-KNGVVNRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP  146 (462)
T ss_pred             cC-CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence            00 000000000000 00  011223355566678999887743 22  344556666433 46899999999999875

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.24  E-value=2.5e-05  Score=88.83  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCCc-EEEc-cEEEEecCCChH
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSS-HLIIDAMGNFSP  262 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~--~~G~-~i~A-rlVIdADG~~S~  262 (584)
                      +...|...|.+.+++.|++++.+++|+++..+++.++ |.+  .++. +++| +.||-|+|..+.
T Consensus       215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            3445667888999999999999999999987765443 333  2343 5899 889999998875

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.22  E-value=2.2e-05  Score=87.89  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.|.+++. .|++++.++.++++..+++.+. |.+.  +|+  .++|+.||.|+|..+.
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            456777777775 6899999999999977665433 3332  343  6899999999999874

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.22  E-value=2e-05  Score=89.60  Aligned_cols=59  Identities=14%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EE---EcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LL---LAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~---~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+...|.+++.+.|++++.++.++++..+++ .++ |.   ..+|+  .+.|+-||-|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            45778888888888999999999999987543 332 22   23454  68999999999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.1e-05  Score=89.33  Aligned_cols=139  Identities=19%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+||||||||| .|..+|..+|++|++|+|||+.+ ..+....++ +....+-..  ..+...  ++..  ..+   .+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~--a~~~~~--~~~~--~~~---g~~   73 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHV--AKVIEE--AKAL--AEH---GIV   73 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHH--HHHHHH--Hhhh--hhc---Ccc
Confidence            47999999965 68888889999999999999874 333211111 322221110  000000  0000  000   011


Q ss_pred             ecCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCCh
Q 007945          186 FEGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       186 f~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S  261 (584)
                      +. ...+..+..... .+  -.++.......+++.|++++.++..   ..+++.+.|+..+|  .++++|.||-|+|...
T Consensus        74 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p  148 (471)
T PRK06467         74 FG-EPKIDIDKMRAR-KEKVVKQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP  148 (471)
T ss_pred             cC-CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence            10 000100010000 00  0112233344566779999877532   23455677776666  4799999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.22  E-value=1e-05  Score=89.25  Aligned_cols=139  Identities=22%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||+. ..|....++ +....+......  ..  ..+.  ...|    ..+
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~   74 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY   74 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence            699999996 569999999999999999999964 444321111 332222110000  00  0000  0000    000


Q ss_pred             cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S  261 (584)
                      .....+..+..+... --.+.+.+.+.+.+.+.|++++.++ +..  .+.+.++|...+|+  ++++|.||-|+|...
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p  149 (461)
T PRK05249         75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARF--VDPHTVEVECPDGEVETLTADKIVIATGSRP  149 (461)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence            000000000100000 0001123345566677889888774 222  34556777776664  799999999999764

>PTZ00058 glutathione reductase; Provisional

Probab=98.22  E-value=4.2e-06  Score=94.33  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=32.5

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      .+||||||||| +|.++|..+++.|.+|+||||...+|.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGt   85 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGT   85 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence            47999999965 688888899999999999999866664

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.21  E-value=3.2e-05  Score=87.38  Aligned_cols=34  Identities=32%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .++||||||+ ++|+++|+.++++|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3799999996 579999999999999999999998

>PLN02815 L-aspartate oxidase

Probab=98.21  E-value=1.8e-05  Score=89.85  Aligned_cols=159  Identities=16%  Similarity=0.241  Sum_probs=84.6

Q ss_pred             CCCCCCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---cC--------CHHH-HHHHHHcC--CCcc
Q 007945          104 SDKAVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE  168 (584)
Q Consensus       104 ~~~~~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w---~I--------s~~~-l~~L~~lG--l~~~  168 (584)
                      .++...++||||||| ++|+++|+.+++.| +|+||||.+..+....|   +|        +.+. ++.....|  +.++
T Consensus        23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~  101 (594)
T PLN02815         23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE  101 (594)
T ss_pred             ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence            444555799999996 57999999999999 99999998865432111   11        1111 11111111  1111


Q ss_pred             cccchhhh-----ccc-CCceeeecCC--Ccccc--c------ccc-cceeCHHHHHHHHHHHHHhC-CCEEEeCceEEE
Q 007945          169 DDIDEATA-----TKF-NPNRCGFEGK--GEIWV--E------DIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS  230 (584)
Q Consensus       169 ~ele~~i~-----~~~-~~~~v~f~~~--~~l~~--~------~~l-~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~  230 (584)
                      .-++.++.     .+| ....+.|...  ..+..  .      ..+ .....-..+...|.+++.+. |++++.++.+++
T Consensus       102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~  181 (594)
T PLN02815        102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID  181 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence            11111000     000 0001222110  00000  0      000 00012345777888888765 889999999999


Q ss_pred             EEEeCCe----EE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945          231 ICTYENA----AV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       231 v~~~~~g----v~-V~~---~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      +..++++    ++ |.+   .+|+  .+.|+-||-|+|..+.+
T Consensus       182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI  224 (594)
T ss_pred             eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence            9875432    22 222   2454  58999999999988653

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.19  E-value=2.5e-05  Score=88.64  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc-EEEcc-EEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK-ILSSH-LIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~-~i~Ar-lVIdADG~~S~  262 (584)
                      .+.+.|.+++++.|++++.+++|+++..+++.++ |.+.  ++. ++.|+ -||-|+|..+.
T Consensus       215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            3556678888889999999999999988776443 3332  343 57884 68889998874

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.18  E-value=0.0012  Score=72.71  Aligned_cols=38  Identities=11%  Similarity=0.177  Sum_probs=34.3

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      ++|..+++|++|+.+++++.|++.+|+++.||.||-|.
T Consensus       239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~  276 (463)
T PRK12416        239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAA  276 (463)
T ss_pred             ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECC
Confidence            47999999999999988998888888889999999887

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.18  E-value=1.3e-05  Score=88.31  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=70.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| |+|.++|..++++|++|+||||....|....++ |....+..-.+  +..  ....  ...|.   +...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~--~~~--~~~~--~~~~g---~~~~   72 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASD--LAE--RMHD--AADYG---FYQN   72 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHH--HHH--HHhH--HhhcC---cccC
Confidence            599999996 568888889999999999999987666322121 22111100000  000  0000  00000   0000


Q ss_pred             CCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ....+..+...... ---+.+.+.+...+.+.|++++.++...   .++..  |.+ ++++++++.||-|+|...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~--v~v-~~~~~~~d~vIiAtGs~p  141 (450)
T TIGR01421        73 LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGT--VEV-NGRDYTAPHILIATGGKP  141 (450)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCE--EEE-CCEEEEeCEEEEecCCCC
Confidence            00000000000000 0001233445566777899999887542   22333  333 567899999999999765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.17  E-value=2.6e-05  Score=89.74  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEE-cCCc--EEEccEEEEecCCChHH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g---v~V~~-~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      .+...|.+++.+.|++++.++.++++..+++.   +++.. .+|+  .+.|+-||-|+|..+.+
T Consensus       159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence            45667888888899999999999999877654   33432 3554  57899999999987654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.17  E-value=2.9e-05  Score=81.35  Aligned_cols=111  Identities=12%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|++||+....+...   .+             .  +     ...|       .+
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~---~~-------------~--~-----~~~~-------~~   55 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT---TT-------------T--E-----VENW-------PG   55 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCcee---cC-------------c--e-----ECCC-------CC
Confidence            689999996 579999999999999999999654322100   00             0  0     0000       00


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .         ...++...+.+.+.+.+...+.+++.+ ++++++..++.++++.. ..+++++.||-|+|...
T Consensus        56 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~  117 (321)
T PRK10262         56 D---------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGD-SGEYTCDALIIATGASA  117 (321)
T ss_pred             C---------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEec-CCEEEECEEEECCCCCC
Confidence            0         001234456677777777777776665 57778777777777653 34799999999999975

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.16  E-value=5.7e-05  Score=83.20  Aligned_cols=58  Identities=17%  Similarity=0.229  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChHHH
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~v~  264 (584)
                      +.+.+.+.+++.|++++.++++++++.+++++.+.+.+|  +++.++.||-|.|..+...
T Consensus       213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       213 VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            455667778888999999999999988777887777666  5799999999999987654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.16  E-value=2.9e-05  Score=87.87  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEc-cEEEEecCCChHHH
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV  264 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~-~~G~--~i~A-rlVIdADG~~S~v~  264 (584)
                      |...|.+++++.|++++.+++++++..+++.|+ |.. .+|+  .+.| +-||-|+|..+...
T Consensus       219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~  281 (564)
T PRK12845        219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM  281 (564)
T ss_pred             HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence            455677888889999999999999986554332 222 2343  4667 57888999888654

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.14  E-value=8.7e-06  Score=88.03  Aligned_cols=113  Identities=19%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCcccccchhhhcccC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN  180 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~  180 (584)
                      -||+||||| +|+.+|+.||++|++|+|+|+++....+         +.-+.|..+...+...|+|.+ +++..     .
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~l-----g   76 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRL-----G   76 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHh-----c
Confidence            599999975 7999999999999999999987765321         112344445556667777752 22111     0


Q ss_pred             CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 007945          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC  232 (584)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~  232 (584)
                      .  +.+........|..-...+|+..+.+.|.+++++. +++++ ..+|+++.
T Consensus        77 s--l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         77 S--LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             c--hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence            0  11111111112222124689988999999999876 46776 56787774

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.12  E-value=6e-05  Score=85.82  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHhCC----CEEEeCceEEEEEEeCCe-E---EEEEc-CCc--EEEccEEEEecCCChHH
Q 007945          204 PAKLIEIVKKRFISLG----GVIFEGYSVSSICTYENA-A---VLLLA-EGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G----~~i~~~t~v~~v~~~~~g-v---~V~~~-~G~--~i~ArlVIdADG~~S~v  263 (584)
                      -..+...|.+++.+.+    ++++.++.++++..++++ +   .+... +++  .+.|+-||-|+|..+.+
T Consensus       132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII  202 (589)
T ss_pred             HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence            3456777777776543    679999999999875443 2   22221 343  58999999999998753

>PRK06370 mercuric reductase; Validated

Probab=98.11  E-value=1.5e-05  Score=87.92  Aligned_cols=136  Identities=20%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhh-hcccCCceee
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v~  185 (584)
                      .+||||||||| .|.++|..++++|++|+||||....|....++ |..+.+....+.       ..... ...+  + +.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~-------~~~~~~~~~~--g-~~   73 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARA-------AHLARRAAEY--G-VS   73 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHH-------HHHHHHHHhc--C-cc
Confidence            36999999965 68888889999999999999987666432222 332222110000       00000 0000  0 00


Q ss_pred             ecCCCcccccccccc---eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          186 FEGKGEIWVEDILNL---GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       186 f~~~~~l~~~~~l~~---~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ......+..+.....   .++  .+...+.+.+++. |++++.++.+.   .++..  |++ +++++++|.||-|+|...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~--v~v-~~~~~~~d~lViATGs~p  145 (463)
T PRK06370         74 VGGPVSVDFKAVMARKRRIRA--RSRHGSEQWLRGLEGVDVFRGHARF---ESPNT--VRV-GGETLRAKRIFINTGARA  145 (463)
T ss_pred             cCccCccCHHHHHHHHHHHHH--HHHHhHHHHHhcCCCcEEEEEEEEE---ccCCE--EEE-CcEEEEeCEEEEcCCCCC
Confidence            000000000000000   011  1223445566666 89988877542   23333  333 466899999999999865


Q ss_pred             H
Q 007945          262 P  262 (584)
Q Consensus       262 ~  262 (584)
                      .
T Consensus       146 ~  146 (463)
T PRK06370        146 A  146 (463)
T ss_pred             C
Confidence            3

>PRK06116 glutathione reductase; Validated

Probab=98.10  E-value=1.5e-05  Score=87.68  Aligned_cols=36  Identities=39%  Similarity=0.642  Sum_probs=31.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||+|||| |+|+++|..|+++|++|+|||+....|
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG   40 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG   40 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence            699999996 568998999999999999999976555

>PLN02507 glutathione reductase

Probab=98.09  E-value=3.3e-05  Score=86.20  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCCh
Q 007945          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       208 ~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S  261 (584)
                      ...+.+.+.+.|++++.+ ++..  .+++.+.|++.+|+  ++++|.||-|+|...
T Consensus       127 ~~~~~~~l~~~gV~~i~g-~a~~--vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p  179 (499)
T PLN02507        127 NGIYKRLLANAGVKLYEG-EGKI--VGPNEVEVTQLDGTKLRYTAKHILIATGSRA  179 (499)
T ss_pred             HHHHHHHHHhCCcEEEEE-EEEE--ecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence            334445566678888776 3333  34567888877775  599999999999865

>PRK12839 hypothetical protein; Provisional

Probab=98.09  E-value=6.2e-05  Score=85.38  Aligned_cols=60  Identities=17%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce---EEEEEcCCc-EEE-ccEEEEecCCChH
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLAEGK-ILS-SHLIIDAMGNFSP  262 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~g---v~V~~~~G~-~i~-ArlVIdADG~~S~  262 (584)
                      +...|...|.+++.+.|++++.++.++++..++ +.   |++...+++ ++. ++-||-|+|..+.
T Consensus       212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            445667788899999999999999999997754 33   333333444 344 4788888887775

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.09  E-value=3.6e-05  Score=86.21  Aligned_cols=36  Identities=36%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ++||||||+|+|+++|+.+|+.|++|+||||.+..+
T Consensus         7 ~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          7 EVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             ccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            799999994488889999999999999999987643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.08  E-value=4.8e-05  Score=86.03  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcc-EEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~Ar-lVIdADG~~S~  262 (584)
                      .+...|.+.+++.|++++.+++++++..+++.|+ |.+. +++  +|+|+ -||-|+|..+.
T Consensus       209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            3556777788888999999999999988766543 3332 343  58896 47777776655

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.07  E-value=0.0027  Score=69.36  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=35.0

Q ss_pred             EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       221 ~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      +|+.+++|++|..++++++|.+.+|+++.||.||-|.-.
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            799999999999988888888888989999999988654

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.05  E-value=5.2e-05  Score=85.65  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC--CeEE-EE-EcCCc--EEEccEEEEecCCCh
Q 007945          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--NAAV-LL-LAEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~--~gv~-V~-~~~G~--~i~ArlVIdADG~~S  261 (584)
                      ..+...|.+++.+. |++++.++.++++..++  +.++ |. ..+|+  .+.|+-||-|+|..+
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence            35667788887654 89999999999998764  3222 22 23454  489999999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.04  E-value=5.7e-05  Score=85.89  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=32.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .++||||||+ ++|+++|..++++|.+|+||||.+..+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            4699999996 579999999999999999999998643

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.03  E-value=0.00011  Score=82.89  Aligned_cols=60  Identities=13%  Similarity=0.167  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC------CeEE-EEE---cCCc--EEEccEEEEecCCChHHH
Q 007945          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~------~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v~  264 (584)
                      ..+...|.+++.+. |++++.++.++++..++      +.++ |.+   .+|+  .|.|+.||.|+|..+.+.
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~  210 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY  210 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence            35677888888765 78999999999997653      3332 322   2344  599999999999988543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.03  E-value=2.8e-05  Score=85.40  Aligned_cols=129  Identities=23%  Similarity=0.309  Sum_probs=76.4

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..+||+||||| .|+++|..|.++|.. ++++||+..++..  |...+     .  -++.       +....+   ...|
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~--W~~~r-----y--~~l~-------~~~p~~---~~~~   67 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT--WRYNR-----Y--PGLR-------LDSPKW---LLGF   67 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc--chhcc-----C--CceE-------ECCchh---eecc
Confidence            47999999965 799999999999999 9999999865522  32110     0  0000       000000   0111


Q ss_pred             cCCCcc-cccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCcE--EEccEEEEecCC
Q 007945          187 EGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN  259 (584)
Q Consensus       187 ~~~~~l-~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~--~gv~V~~~~G~~--i~ArlVIdADG~  259 (584)
                      .. .+. +.+....  .  ..+...+...+.+.+.  .+...+.|..+..++  +.++|++++|.+  ++||.||-|+|+
T Consensus        68 ~~-~p~~~~~~~~~--~--~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~  142 (443)
T COG2072          68 PF-LPFRWDEAFAP--F--AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH  142 (443)
T ss_pred             CC-CccCCcccCCC--c--ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence            11 000 0000000  1  1245666667776665  555556665565544  478999987765  569999999999


Q ss_pred             Ch
Q 007945          260 FS  261 (584)
Q Consensus       260 ~S  261 (584)
                      .|
T Consensus       143 ~~  144 (443)
T COG2072         143 LS  144 (443)
T ss_pred             CC
Confidence            65

>PRK14694 putative mercuric reductase; Provisional

Probab=98.02  E-value=3.8e-05  Score=84.99  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||||||||| +|+++|..|++.|++|+|||+....|
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GG   42 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGG   42 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence            37999999965 68888889999999999999986555

>PRK09897 hypothetical protein; Provisional

Probab=98.02  E-value=5.5e-05  Score=84.73  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce-ee-
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CG-  185 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~-v~-  185 (584)
                      .+|+||||| .|+++|..|++.  .++|.|+|++..+|....|......-..+....-.+...... .-.+|.... .. 
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~-~f~~Wl~~~~~~~   80 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYC-TYLEWLQKQEDSH   80 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChH-HHHHHhhhhhHHH
Confidence            589999965 699999999865  469999999877665444433110000111100000000000 000110000 00 


Q ss_pred             ec--C------CCcccccccccceeCHHHHH---HHHHHHHHhCC--CEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcc
Q 007945          186 FE--G------KGEIWVEDILNLGVSPAKLI---EIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSH  251 (584)
Q Consensus       186 f~--~------~~~l~~~~~l~~~vd~~~L~---~~L~~~a~~~G--~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~Ar  251 (584)
                      +.  +      ...-+.|    ..+-...|.   +.+.+.+.+.|  +.++..++|+++..++++++|++.+ +..+.|+
T Consensus        81 ~~~~g~~~~~l~~~~f~P----R~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD  156 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLP----RILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFD  156 (534)
T ss_pred             HHhcCCcceeecCCccCC----eecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcC
Confidence            00  0      0001111    112222222   33455566666  5788899999999988899988855 5689999


Q ss_pred             EEEEecCCCh
Q 007945          252 LIIDAMGNFS  261 (584)
Q Consensus       252 lVIdADG~~S  261 (584)
                      .||-|+|+..
T Consensus       157 ~VVLAtGh~~  166 (534)
T PRK09897        157 LAVIATGHVW  166 (534)
T ss_pred             EEEECCCCCC
Confidence            9999999854

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.01  E-value=0.00031  Score=72.67  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=52.1

Q ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--cEEEccEEEEecCC
Q 007945          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN  259 (584)
Q Consensus       202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---------~~-----------gv~V~~~~G--~~i~ArlVIdADG~  259 (584)
                      +|+..|+..+++++...|+.+. +.+|++.+.+         ++           ++.|...|+  +++++.++|.|.|+
T Consensus       240 fdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa  318 (509)
T KOG2853|consen  240 FDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA  318 (509)
T ss_pred             cCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence            7888999999999998887654 4456665544         22           244554443  57999999999999


Q ss_pred             ChH-HHhHhcCCCCC
Q 007945          260 FSP-VVKQIRSGRKP  273 (584)
Q Consensus       260 ~S~-v~rql~~~~~~  273 (584)
                      +|- |++.++++.++
T Consensus       319 ~s~QvArlAgIG~g~  333 (509)
T KOG2853|consen  319 WSGQVARLAGIGKGP  333 (509)
T ss_pred             cHHHHHHHhccCCCC
Confidence            997 88877777543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.01  E-value=3.6e-05  Score=83.63  Aligned_cols=134  Identities=17%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCcccccchhhhcccC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN  180 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~  180 (584)
                      .||+||||| +|+.+|..||++|++|+|+|+++..+.+         +.-+.|-.....+...|+|.+ +++..     .
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~l-----g   74 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQL-----S   74 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhc-----C
Confidence            489999976 6999999999999999999987653321         111122222334445555532 11110     0


Q ss_pred             CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC-
Q 007945          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN-  259 (584)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~-  259 (584)
                      .  +.+.......++..-...+|+..+.+.+.+++.+.....+...+++++..                .+.||-|+|. 
T Consensus        75 ~--l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~----------------~d~VViATG~~  136 (433)
T TIGR00137        75 S--LIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE----------------EGITVIATGPL  136 (433)
T ss_pred             e--eeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc----------------CCeEEEeCCCC
Confidence            0  11111011111222234578888889999998776442223445554431                2357778885 


Q ss_pred             -ChHHHhHhc
Q 007945          260 -FSPVVKQIR  268 (584)
Q Consensus       260 -~S~v~rql~  268 (584)
                       ...+.+++.
T Consensus       137 ~s~~La~~L~  146 (433)
T TIGR00137       137 TSPALSEDLK  146 (433)
T ss_pred             ccHHHHHHHH
Confidence             344666554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.01  E-value=4.3e-05  Score=86.83  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEc-cEEEEecCCChHHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPVV  264 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~A-rlVIdADG~~S~v~  264 (584)
                      ..+...|.+++++.|++++.+++++++..+++.++ |.+. +++  ++.| +-||-|+|..+.-.
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~  285 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHP  285 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCH
Confidence            34677888999999999999999999987666443 3333 343  5786 68888999888743

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.00  E-value=8.1e-05  Score=84.20  Aligned_cols=57  Identities=14%  Similarity=0.328  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEcc-EEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~-~~G~--~i~Ar-lVIdADG~~S~  262 (584)
                      .+...|.+++++.|++++.++.++++..+++.|+ |.. .+|+  ++.|+ -||-|+|..+.
T Consensus       209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            4566778889899999999999999988766443 333 2343  58895 57778887765

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.99  E-value=7.1e-05  Score=83.85  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEccEEEEecCCChH
Q 007945          204 PAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~ArlVIdADG~~S~  262 (584)
                      ...+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++.  +++|+-||-|+|..+.
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence            345778888888765 899999999999876655332 3332 232  6999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.99  E-value=8.4e-05  Score=61.60  Aligned_cols=78  Identities=24%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~  191 (584)
                      |+||||| +|+-+|..|++.|.+|.+|++.+.+. +                                         .  
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~-----------------------------------------~--   37 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P-----------------------------------------G--   37 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T-----------------------------------------T--
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h-----------------------------------------h--
Confidence            7899965 79999999999999999999886322 0                                         0  


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 007945          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG  245 (584)
Q Consensus       192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G  245 (584)
                                ++ ..+.+.+.+.+++.|++++.++.+.++..++++++|+++||
T Consensus        38 ----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   38 ----------FD-PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             ----------SS-HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             ----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                      01 12345566777888999999999999999988877888775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.98  E-value=5.5e-05  Score=82.78  Aligned_cols=135  Identities=15%  Similarity=0.134  Sum_probs=86.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHH----HHHHHcCCCcccccchhhhcccCCcee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL----LELVESGILVEDDIDEATATKFNPNRC  184 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l----~~L~~lGl~~~~ele~~i~~~~~~~~v  184 (584)
                      .-+|+|||+ ++|+++|..|.+.|+.|+++||...++.  -|.....+=    .....+            ....+..-.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l------------~tn~pKe~~   71 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSL------------RTNLPKEMM   71 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhh------------hccCChhhh
Confidence            469999995 6799999999999999999999987662  132211000    000000            000000001


Q ss_pred             eecCCCcccccc-cccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC-CeEEEEEcCC----cEEEccEEEEe
Q 007945          185 GFEGKGEIWVED-ILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDA  256 (584)
Q Consensus       185 ~f~~~~~l~~~~-~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~-~gv~V~~~~G----~~i~ArlVIdA  256 (584)
                      .|.+   ...++ ..++.-+...+.+.|..-|+.-+.  .+..++++..++... +.|.|.+.++    .+..+|.||-|
T Consensus        72 ~~~d---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVc  148 (448)
T KOG1399|consen   72 GYSD---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVC  148 (448)
T ss_pred             cCCC---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEc
Confidence            1111   11111 112224456788999998888775  789999999998877 5888888653    47889999999


Q ss_pred             cCCCh
Q 007945          257 MGNFS  261 (584)
Q Consensus       257 DG~~S  261 (584)
                      +|++.
T Consensus       149 tGh~~  153 (448)
T KOG1399|consen  149 TGHYV  153 (448)
T ss_pred             ccCcC
Confidence            99994

>TIGR03452 mycothione_red mycothione reductase

Probab=97.95  E-value=3.4e-05  Score=85.02  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 007945          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE  147 (584)
Q Consensus       110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~  147 (584)
                      +|||||||||+|+..| ++++.|.+|+||||....|..
T Consensus         2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC   38 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC   38 (452)
T ss_pred             CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence            5999999987655555 345679999999998777643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02612 phytoene desaturase

Probab=97.94  E-value=0.0057  Score=69.50  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~  259 (584)
                      +-+.|.+.+++.|++|+.+++|++|..++++.  .|.+.+|+++.||.||-|...
T Consensus       310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            33555566667899999999999998876653  366778889999999999754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.94  E-value=9.6e-05  Score=82.95  Aligned_cols=137  Identities=21%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+++|..|.+.|+.|+++||++..|-  .|......     .-|-.  .-.+.+. ...+.....|.+  
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG--~W~~~~~~-----~~g~~--~~y~sl~-~n~sk~~~~fsd--   70 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG--LWRYTENP-----EDGRS--SVYDSLH-TNTSKEMMAFSD--   70 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG--GGCHSTTC-----CCSEG--GGSTT-B--SS-GGGSCCTT--
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc--cCeeCCcC-----CCCcc--ccccceE-EeeCchHhcCCC--
Confidence            58999965 699988899999999999999987662  23211000     00000  0000000 000011122221  


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Cc--EEEccEEEEecCCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~-----gv~V~~~~-G~--~i~ArlVIdADG~~  260 (584)
                       ...|....--.....+.+.|..-|...+.  .|..+|+|+++...++     .+.|++.+ |+  +-..|.||-|+|++
T Consensus        71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~  149 (531)
T PF00743_consen   71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF  149 (531)
T ss_dssp             -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred             -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence             11111111124567889999999988776  6899999999988754     58888764 43  34568899999998


Q ss_pred             h
Q 007945          261 S  261 (584)
Q Consensus       261 S  261 (584)
                      +
T Consensus       150 ~  150 (531)
T PF00743_consen  150 S  150 (531)
T ss_dssp             S
T ss_pred             C
Confidence            7

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.92  E-value=8e-05  Score=82.58  Aligned_cols=31  Identities=39%  Similarity=0.528  Sum_probs=28.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVER  140 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr  140 (584)
                      +|||||||| ++|+++|..+++.|.+|+|||+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            699999996 5799999999999999999998

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.92  E-value=7.1e-05  Score=82.82  Aligned_cols=36  Identities=42%  Similarity=0.581  Sum_probs=30.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~  145 (584)
                      +|||+|||| |+|+++|..++++|++|+|||++ ...|
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG   40 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG   40 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence            599999995 56888888999999999999974 4444

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.91  E-value=0.00018  Score=81.97  Aligned_cols=57  Identities=21%  Similarity=0.178  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeC---C---eEEE-EEcCCc--EEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~---~---gv~V-~~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      .+.+.+...+.+.+++++.++.++++..++   +   |+++ ...+|+  .+.|+.||-|+|..+.
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            445566666666778999999999998764   2   3333 223454  6899999999999863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.90  E-value=0.00022  Score=87.21  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +.++||||||| ++|+++|..+++.|.+|+||||.+..+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            34699999996 579999999999999999999987654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.90  E-value=0.00017  Score=78.95  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce-EE-EEEc-CCcEEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV-LLLA-EGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~g-v~-V~~~-~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.|.+++++.|++++.+++++++..++ ++ ++ |... ++.+++|+.||-|+|..+.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            4577888999999999999999999998763 33 32 3333 3458999999999998765

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.90  E-value=4.8e-05  Score=83.39  Aligned_cols=33  Identities=39%  Similarity=0.551  Sum_probs=29.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +|||||||| ++|+++|..|+++|++|+||||..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            599999996 568888889999999999999985

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.89  E-value=0.00016  Score=82.57  Aligned_cols=30  Identities=30%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |||||| ++|+++|..+++.|.+|+||||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            789995 579999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.87  E-value=9.3e-05  Score=83.69  Aligned_cols=37  Identities=30%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      +|||||||| +.|+++|..|++.|++|+|||+...+|.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~  135 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT  135 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence            699999996 5688888899999999999999865553

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.85  E-value=0.00028  Score=76.31  Aligned_cols=69  Identities=9%  Similarity=0.058  Sum_probs=55.2

Q ss_pred             eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe-EEEEEcC-----CcEEEccEEEEecCCChH-HHhHhcC
Q 007945          201 GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE-----GKILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~g-v~V~~~~-----G~~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      .||-..|-+.|.+.+.+. |+++..+++|+++.+.+|+ +.|++.|     .++++||+|+-..|..|- +.+..++
T Consensus       177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI  253 (488)
T ss_pred             cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence            377778888888888887 8899999999999998887 8888753     347999998777777765 6665554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.83  E-value=1.9e-05  Score=83.86  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCC-ceeee
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF  186 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~-~~v~f  186 (584)
                      .||+|+|| ||.++++|+.|...+ ++++.+||.+....+..+-+....++.    ..     +.+++.. .+| ...+|
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlvt~-~~P~s~~sf   71 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLVTL-RDPTSPFSF   71 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSSTT-T-TTSTTSH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccCcC-cCCCCcccH
Confidence            58999999 788999999998664 999999998865443333222211110    00     1111110 111 11222


Q ss_pred             cC----CCcccccccc-cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEc----CCcEEEccEE
Q 007945          187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI  253 (584)
Q Consensus       187 ~~----~~~l~~~~~l-~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~----~G~~i~ArlV  253 (584)
                      .+    .++++.-... .....+..+.+.|...+.+....+..+++|++|...++    .+.|++.    +++++.||-|
T Consensus        72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v  151 (341)
T PF13434_consen   72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV  151 (341)
T ss_dssp             HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred             HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence            11    1121100000 11256778888998888777777999999999987654    4778874    3468999999


Q ss_pred             EEecCCChHH
Q 007945          254 IDAMGNFSPV  263 (584)
Q Consensus       254 IdADG~~S~v  263 (584)
                      |-|.|....+
T Consensus       152 Vla~G~~P~i  161 (341)
T PF13434_consen  152 VLATGGQPRI  161 (341)
T ss_dssp             EE----EE--
T ss_pred             EECcCCCCCC
Confidence            9999944333

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.82  E-value=5.5e-05  Score=82.18  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEcC---Cc--EEEccEEEEecCCChHHHhHhcC
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIRS  269 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~--V~~~~---G~--~i~ArlVIdADG~~S~v~rql~~  269 (584)
                      |-.++.-.+.--|.++|+.+....+|.++..++++-+  +.+.|   |+  +|+|+.||.|+|..|--.+++..
T Consensus       222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd  295 (680)
T KOG0042|consen  222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDD  295 (680)
T ss_pred             chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcc
Confidence            4456666777778889999999999999988777522  33333   54  69999999999999986666643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.82  E-value=0.00011  Score=80.64  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|||||||| ++|+++|..|+++|++|+|||+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            599999996 579999999999999999999975

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.81  E-value=0.00018  Score=86.66  Aligned_cols=109  Identities=16%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..+||+|||| ++|+++|..+++.|++|+|+|+.+..+..    +..                         ...  ...
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~  210 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID  210 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence            4689999995 67999999999999999999998754311    000                         000  000


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEE-E--------cC---C--cEEEccE
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL  252 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~-~--------~~---G--~~i~Arl  252 (584)
                                   ..+...+...+.+++.+.+ ++++.+++|.++..+..-..+. .        .+   +  .+++++-
T Consensus       211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~  277 (985)
T TIGR01372       211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR  277 (985)
T ss_pred             -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence                         0122344455666776664 8999999998874322111111 0        01   1  1699999


Q ss_pred             EEEecCCCh
Q 007945          253 IIDAMGNFS  261 (584)
Q Consensus       253 VIdADG~~S  261 (584)
                      ||-|+|...
T Consensus       278 VILATGa~~  286 (985)
T TIGR01372       278 VVLATGAHE  286 (985)
T ss_pred             EEEcCCCCC
Confidence            999999864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=0.00021  Score=79.03  Aligned_cols=37  Identities=32%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      +|||+|||| ++|+++|..++++|.+|+|||+....|.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~   41 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV   41 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            599999996 5688888899999999999999866654

>PLN02546 glutathione reductase

Probab=97.80  E-value=0.00017  Score=81.40  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=28.2

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER  140 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr  140 (584)
                      ..+|||+||||| .|..+|..+|++|.+|+|||+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            346999999965 577777799999999999996

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.80  E-value=1.9e-05  Score=87.84  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      .+.+.|.+.++++|++|+.+++|++|..+++ ++++...+|..+.+|.||.+...
T Consensus       225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            4677899999999999999999999999877 56777777778999999987666

>PRK07846 mycothione reductase; Reviewed

Probab=97.79  E-value=0.00011  Score=80.89  Aligned_cols=37  Identities=35%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 007945          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE  147 (584)
Q Consensus       110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~  147 (584)
                      +|||||||||+|+..|+ +++.|.+|+|||+....|..
T Consensus         1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC   37 (451)
T PRK07846          1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC   37 (451)
T ss_pred             CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence            48999999876555444 34569999999998776643

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.79  E-value=0.00015  Score=81.69  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCe-E---E-EEEcCCc--EEEccEEEEecCCCh
Q 007945          205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA-A---V-LLLAEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       205 ~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~g-v---~-V~~~~G~--~i~ArlVIdADG~~S  261 (584)
                      ..+...|.+++.+ .+.+++....++++..++++ +   + +.+.+|+  .++|+-||-|+|...
T Consensus       138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            3577888888887 45689999999999877553 2   2 2233454  588999999998776

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=4.3e-05  Score=83.44  Aligned_cols=139  Identities=18%  Similarity=0.199  Sum_probs=82.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCccccc-----CCHHH-HHHHHHcCCCcccccchhhhcccCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWN-----ISRKE-LLELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~r~w~-----Is~~~-l~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      +||||||||| +|+-+|++.||.|++|+|+--+... +. -.+|     +.+.. ..++..+|=        ......+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG~lvrEIDALGG--------~Mg~~~D~   74 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKGHLVREIDALGG--------LMGKAADK   74 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccceeEEeehhccc--------hHHHhhhh
Confidence            5999999988 8999999999999999999765421 11 0111     11110 011222220        00000011


Q ss_pred             ceeeecC----CCc-ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCcEEEccEEE
Q 007945          182 NRCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGKILSSHLII  254 (584)
Q Consensus       182 ~~v~f~~----~~~-l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v-~V~~~~G~~i~ArlVI  254 (584)
                      ..+.|.-    +++ .+.+   ...+|+....+.+.+.+.....--+....|+++..+++. + -|.+.+|..+.|+.||
T Consensus        75 ~~IQ~r~LN~sKGPAVra~---RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV  151 (621)
T COG0445          75 AGIQFRMLNSSKGPAVRAP---RAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV  151 (621)
T ss_pred             cCCchhhccCCCcchhcch---hhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence            1122210    111 1111   123677777778888887776544455668888876653 4 4777889999999999


Q ss_pred             EecCCC
Q 007945          255 DAMGNF  260 (584)
Q Consensus       255 dADG~~  260 (584)
                      -++|..
T Consensus       152 lTTGTF  157 (621)
T COG0445         152 LTTGTF  157 (621)
T ss_pred             Eeeccc
Confidence            999976

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.75  E-value=0.00023  Score=78.84  Aligned_cols=141  Identities=19%  Similarity=0.250  Sum_probs=75.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec-
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE-  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~-  187 (584)
                      -|||||||| .|+.+|..++++|.+|+||||....+....++ +..+.+-.-.+  +..  .+..  ...+   .+... 
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~--~~~--~~~~--~~~~---g~~~~~   72 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAE--VRT--ELRR--AAEL---GIRFID   72 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHH--HHH--HHHH--HHhC---Cccccc
Confidence            389999965 68888889999999999999987666432222 22111100000  000  0000  0000   00000 


Q ss_pred             -CCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEE--EeCCeEEEEEcCCc--EEEccEEEEecCCC
Q 007945          188 -GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       188 -~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~--~~~~gv~V~~~~G~--~i~ArlVIdADG~~  260 (584)
                       ....+..+..... ++  .+.+.+.+.+.+.+.|++++.++. +.++  .+++.++|++.+|+  ++.+|.||-|+|..
T Consensus        73 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~  150 (466)
T PRK07845         73 DGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS  150 (466)
T ss_pred             CcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence             0000000000000 00  011233456677778999988753 3322  45667888777775  79999999999997


Q ss_pred             hH
Q 007945          261 SP  262 (584)
Q Consensus       261 S~  262 (584)
                      ..
T Consensus       151 p~  152 (466)
T PRK07845        151 PR  152 (466)
T ss_pred             CC
Confidence            63

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.74  E-value=0.00042  Score=74.40  Aligned_cols=104  Identities=16%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------------------~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------------------S  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------------------h
Confidence            369999975 699999999999999999998652100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql  267 (584)
                       .          .+ ..+...+.+.+.+.|++++.++++.++..+++++.|++.+|+++.+++||.|+|..+  .+.++.
T Consensus       180 -~----------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~  247 (377)
T PRK04965        180 -L----------MP-PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA  247 (377)
T ss_pred             -h----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence             0          00 122344556677789999999999999877777788888899999999999999865  466555


Q ss_pred             c
Q 007945          268 R  268 (584)
Q Consensus       268 ~  268 (584)
                      +
T Consensus       248 g  248 (377)
T PRK04965        248 G  248 (377)
T ss_pred             C
Confidence            4

>TIGR02053 MerA mercuric reductase

Probab=97.72  E-value=0.00017  Score=79.68  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      |||||||| |.|.++|..++++|++|+||||....|.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~   37 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT   37 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence            79999996 5688888899999999999999876664

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.72  E-value=0.00015  Score=79.89  Aligned_cols=36  Identities=36%  Similarity=0.576  Sum_probs=31.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||||||| ++|+++|..|++.|.+|+|||+....+
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG   39 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG   39 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            599999996 568888889999999999999965544

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.70  E-value=6.3e-05  Score=72.62  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      ||||||| ++|+++|..|++.|++|+++|+.+...... ..++..   .+.          +.                .
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~~~---~~~----------~~----------------~   50 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIPSP---LLV----------EI----------------A   50 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHHHH---HHH----------HH----------------H
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccccc---ccc----------cc----------------c
Confidence            7999996 579999999999999999998875311100 000000   000          00                0


Q ss_pred             cccccccccceeCHHHHH--H--HHHHHHHhCCCEEEeCceEEEEEEeCCeE-----EEE---EcCCcEEEccEEEEecC
Q 007945          191 EIWVEDILNLGVSPAKLI--E--IVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMG  258 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~--~--~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-----~V~---~~~G~~i~ArlVIdADG  258 (584)
                      .    .       ...+.  +  .+.+++...+++++.++++.+++.....+     .+.   ..++.++.++.||-|+|
T Consensus        51 ~----~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG  119 (201)
T PF07992_consen   51 P----H-------RHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG  119 (201)
T ss_dssp             H----H-------HHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST
T ss_pred             c----c-------ccccccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCc
Confidence            0    0       00000  0  34445556778998889999998877632     222   23456899999999999


Q ss_pred             CCh
Q 007945          259 NFS  261 (584)
Q Consensus       259 ~~S  261 (584)
                      ..+
T Consensus       120 ~~~  122 (201)
T PF07992_consen  120 SRP  122 (201)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.70  E-value=0.00074  Score=80.69  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      ..+|||||||| ++|+++|..+++.|.+|+||||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            34699999996 5799999999999999999999875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.69  E-value=0.00038  Score=75.32  Aligned_cols=96  Identities=17%  Similarity=0.308  Sum_probs=73.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|||+.+....                                          . 
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  182 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG------------------------------------------R-  182 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh------------------------------------------h-
Confidence            69999975 799999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .          . ...+.+.+.+.+.+.|++++.+++++++.. ++.+.|++.+|+++.|++||-|.|....
T Consensus       183 ~----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        183 N----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             h----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence            0          0 012334556666778999999999999865 5567788888999999999999998765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.63  E-value=0.0003  Score=77.29  Aligned_cols=144  Identities=22%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+|||||||| |.|-.+|..+|+.|.+|++||+. ...|..-.++ |....+-.-  ..+.     +....... ...+.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~--a~~~-----~~~~~~~~-~~Gi~   74 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHA--AEVI-----EEARHAAK-EYGIS   74 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHH--HHHH-----HHHhhccc-cccee
Confidence            3799999996 56777788999999999999999 5666433232 222222110  0000     00000000 00011


Q ss_pred             ecCCCcccccccccceeC-HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          186 FEGKGEIWVEDILNLGVS-PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       186 f~~~~~l~~~~~l~~~vd-~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      .... .+..+......-+ -+.+.......++++|++++.++.-   ..++..+.|...+.++++|+.+|-|+|.+..+-
T Consensus        75 ~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~---f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~  150 (454)
T COG1249          75 AEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR---FVDPHTVEVTGEDKETITADNIIIATGSRPRIP  150 (454)
T ss_pred             cCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE---ECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence            1100 1111111100000 0112233334445568888877532   112445555543347899999999999997544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=7.5e-05  Score=77.21  Aligned_cols=110  Identities=24%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .|||+|||| |+|.++|...||+|+|.-|+-.+ +.+.            .|..++      +|..|.            
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer-fGGQ------------vldT~~------IENfIs------------  259 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER-FGGQ------------VLDTMG------IENFIS------------  259 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh-hCCe------------eccccc------hhheec------------
Confidence            599999996 67888888999999999877422 3331            121111      222111            


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                           +|.     .+-.+|-..|.++.+++.++++...+++++...   .+-..|++.+|-.+++|-||-++|+.
T Consensus       260 -----v~~-----teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         260 -----VPE-----TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             -----ccc-----ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence                 111     122467788888888888888888778777653   34577999999999999999999986

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.63  E-value=0.00033  Score=70.59  Aligned_cols=130  Identities=17%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cc----cc--------c----CCHHHHHHHHHcCCCccccc
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQ----EW--------N----ISRKELLELVESGILVEDDI  171 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~---~r----~w--------~----Is~~~l~~L~~lGl~~~~el  171 (584)
                      +|+|||+ .+|+++|..|+.+|+.|+|+||..-.+-   .|    .|        +    .-.+.++.+.+-|+.     
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV-----   77 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV-----   77 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce-----
Confidence            7999996 5799999999999999999999875431   01    11        0    111223444444433     


Q ss_pred             chhhhcccCCceeeecCCCcccccccccce-e-CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEE
Q 007945          172 DEATATKFNPNRCGFEGKGEIWVEDILNLG-V-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KIL  248 (584)
Q Consensus       172 e~~i~~~~~~~~v~f~~~~~l~~~~~l~~~-v-d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i  248 (584)
                           ..|.+..-.|.+...-..++...+. . ....|-+.|     ....+|..+++|+.+...++.+++++++| +..
T Consensus        78 -----~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-----AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~  147 (331)
T COG3380          78 -----DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-----ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHT  147 (331)
T ss_pred             -----eeccccccccccCCCCCCCCCCccccCcchHHHHHHH-----hccchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence                 2222222222221000000000010 0 111222332     33457889999999999999999999664 457


Q ss_pred             EccEEEEe
Q 007945          249 SSHLIIDA  256 (584)
Q Consensus       249 ~ArlVIdA  256 (584)
                      .++.||-|
T Consensus       148 ~~d~vvla  155 (331)
T COG3380         148 QFDDVVLA  155 (331)
T ss_pred             ccceEEEe
Confidence            77777765

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.62  E-value=0.00049  Score=70.59  Aligned_cols=65  Identities=18%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-----EEEEEcCCcEEEccEEEEecCCChHHHh
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-----v~V~~~~G~~i~ArlVIdADG~~S~v~r  265 (584)
                      .||-..+-..+.+.+...|+.+..+-++.++....+.     ++|.-..+++++++.||.|.|-.|--..
T Consensus       192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~a  261 (453)
T KOG2665|consen  192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCA  261 (453)
T ss_pred             eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHH
Confidence            4777778888899999999999999999998765552     2333223679999999999999887443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.61  E-value=0.00043  Score=77.09  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=27.6

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERN  141 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~  141 (584)
                      .+||||||||| .|..+|..+|++ |.+|+||||.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            36999999976 577777789996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.57  E-value=0.00016  Score=80.68  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=28.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      +|||||||| |+|+++|..++++|.+|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            699999996 56888888999999999999974

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.57  E-value=0.00085  Score=74.01  Aligned_cols=98  Identities=14%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.+||+.+....                                          . 
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  213 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------------F-  213 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------c-
Confidence            69999965 799999999999999999998741100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 +|+ .+.+.+.+.+++.|++++.+++++++..+++++.+++.+|+++.++.||-|.|..+...
T Consensus       214 -----------~d~-~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        214 -----------LDD-EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             -----------CCH-HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence                       011 13345556667789999999999999877778888887888999999999999987653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.56  E-value=0.001  Score=62.53  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             CCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          218 LGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       218 ~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      .|+ ......+|+++...+++..|.+.+|..+.++.||-|+|+
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            354 334567999999999999999999999999999999997

>PRK14727 putative mercuric reductase; Provisional

Probab=97.53  E-value=0.00056  Score=75.99  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~  145 (584)
                      +|||||||| +.|.++|..|++.|.+|++|||. ...|
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG   53 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG   53 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence            699999996 56888888999999999999997 4443

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.0011  Score=71.60  Aligned_cols=47  Identities=11%  Similarity=0.088  Sum_probs=40.1

Q ss_pred             HHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEe
Q 007945          210 IVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (584)
Q Consensus       210 ~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdA  256 (584)
                      .|.+++.+. |..|..+.+|.+|.+++++|+|++.+..++.|+++|.+
T Consensus       210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t  257 (450)
T COG1231         210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT  257 (450)
T ss_pred             HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence            555666544 77999999999999999999999977678999999977

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.49  E-value=0.00076  Score=75.07  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      +||||||||| .|..+|..+++.|.+|++||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5999999965 6888888999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02730 carot_isom carotene isomerase

Probab=97.49  E-value=9.6e-05  Score=82.31  Aligned_cols=62  Identities=21%  Similarity=0.225  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChHHHhHh
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQI  267 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~v~rql  267 (584)
                      .+.+.|.+.+++.|++|+.+++|+++..+++.+ .|.+.+|+++.|+.||-|.|....+.+.+
T Consensus       230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence            466788899999999999999999998876644 47777888999999999999887776544

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.00037  Score=74.91  Aligned_cols=140  Identities=21%  Similarity=0.269  Sum_probs=75.7

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCc----ccccCCHHHH-HHHHHcCCCcccccchhhhcccCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGRE----QEWNISRKEL-LELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~-~~~~----r~w~Is~~~l-~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      ..||||||||| +|+-+|++.||.|.+.+|+-.+-. ++..    ..-+|.+..| .+...+        +..+....+.
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDAL--------dGl~~rvcD~   98 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL--------DGLCSRVCDQ   98 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhh--------cchHhhhhhh
Confidence            37999999987 899999999999999999976642 2211    0112332211 111111        1111111111


Q ss_pred             ceeeecC-----CCcccccccccceeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCe-----E-EEEEcCCcEEE
Q 007945          182 NRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA-----A-VLLLAEGKILS  249 (584)
Q Consensus       182 ~~v~f~~-----~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~g-----v-~V~~~~G~~i~  249 (584)
                      ..+.|.-     +..+|.+   ...+|+......+.+.+..... +|+++ .|.++...+..     + -|.+.||..|.
T Consensus        99 s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~  174 (679)
T KOG2311|consen   99 SGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVY  174 (679)
T ss_pred             hhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEec
Confidence            1122211     1112221   1236666666666555544433 55544 45566553321     2 25566899999


Q ss_pred             ccEEEEecCCC
Q 007945          250 SHLIIDAMGNF  260 (584)
Q Consensus       250 ArlVIdADG~~  260 (584)
                      |+-||--+|..
T Consensus       175 a~~VilTTGTF  185 (679)
T KOG2311|consen  175 AESVILTTGTF  185 (679)
T ss_pred             cceEEEeeccc
Confidence            99999999876

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.45  E-value=0.00034  Score=83.59  Aligned_cols=98  Identities=22%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ..+|+||| ||+|+++|..|+++|++|+|+|+...++-                  ++           .|         
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG------------------~l-----------~y---------  347 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG------------------VL-----------RY---------  347 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc------------------eE-----------Ec---------
Confidence            47999999 57899999999999999999999864331                  00           00         


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +    .|+   +...+ .+.+...+.+++.|+++..++.+-        ..+++++......|.||-|+|...
T Consensus       348 G----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~  404 (944)
T PRK12779        348 G----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL  404 (944)
T ss_pred             c----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence            0    000   01112 233334566677899988776542        234554544566889999999863

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.45  E-value=0.00091  Score=72.69  Aligned_cols=148  Identities=16%  Similarity=0.292  Sum_probs=85.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---C----CH------HHHHHHHH-cCCCcccccchhhh
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----SR------KELLELVE-SGILVEDDIDEATA  176 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---I----s~------~~l~~L~~-lGl~~~~ele~~i~  176 (584)
                      ||+|||+| +|+++|..|++. ++|+||-|.+.......|.   |    +.      +-.+.|.. -|+-++.-++.++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            99999966 699999999988 9999999998764322231   1    11      11112211 12322211111110


Q ss_pred             cc-----c-CCceeeecCCC---------------c-ccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEE
Q 007945          177 TK-----F-NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT  233 (584)
Q Consensus       177 ~~-----~-~~~~v~f~~~~---------------~-l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~  233 (584)
                      ..     + -..-+.|....               + ++..+     -.-..+...|.+++.+ -++++++++.+.++..
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-----~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~  162 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-----ATGKEIMTALLKKVRNRPNITVLEGAEALDLII  162 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-----CccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence            00     0 00012222111               0 11111     1123567788888877 4789999999999998


Q ss_pred             eCC-e---EEEEEcCC--cEEEccEEEEecCCChHHHh
Q 007945          234 YEN-A---AVLLLAEG--KILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       234 ~~~-g---v~V~~~~G--~~i~ArlVIdADG~~S~v~r  265 (584)
                      +++ +   +.+...++  .+++|+.||-|+|.-+.+=+
T Consensus       163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~  200 (518)
T COG0029         163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA  200 (518)
T ss_pred             cCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence            888 3   33332333  57999999999999886654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.43  E-value=0.00089  Score=76.96  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC--CCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN--TLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~--~~~~  145 (584)
                      +||||||||| .|..+|..+|+.|++|+|||+.  ...|
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG  154 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG  154 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc
Confidence            7999999965 5777777999999999999975  4444

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.34  E-value=0.0014  Score=72.37  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      +||||||| +|.++|..+++.|.+|+||||....|.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~   37 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT   37 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence            79999965 688888899999999999999876653

>PRK12831 putative oxidoreductase; Provisional

Probab=97.33  E-value=0.0005  Score=76.11  Aligned_cols=36  Identities=31%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G  176 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG  176 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            579999995 579999999999999999999876443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.29  E-value=0.0012  Score=70.26  Aligned_cols=48  Identities=19%  Similarity=0.202  Sum_probs=36.6

Q ss_pred             HHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          212 KKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       212 ~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+.+.+.|++++.+ +|++++.++.  +|.+.+|++++.|.||-|+|....
T Consensus        61 ~~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        61 RRLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             HHHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence            34455678887764 7888876655  566778889999999999998753

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.26  E-value=0.0018  Score=70.96  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=67.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .||||||| +|+++|..|++.|  .+|+|||+.+...    |..          .++                  ..+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~----~~~----------~~~------------------~~~~~   49 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS----FGA----------CGL------------------PYFVG   49 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce----eec----------CCC------------------ceEec
Confidence            59999965 6899898999864  5999999986422    100          000                  00000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEE--ccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~--ArlVIdADG~~S  261 (584)
                      +  ..        -+...+.....+.+.+.|++++.+++|++++.++..+.++.. +++++.  +|.||-|+|...
T Consensus        50 ~--~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         50 G--FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             c--cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence            0  00        001111112234455678999999999999877777766542 355666  999999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.25  E-value=0.0036  Score=69.06  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=74.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+...+                                          . 
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  210 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------------------------------------------G-  210 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------------------------------------------c-
Confidence            69999965 799999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..+++++.+.+.++   +++.++.||-|.|.....
T Consensus       211 -----------~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        211 -----------ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence                       00 12234455666778999999999999988777777777665   679999999999988654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.25  E-value=0.00043  Score=55.80  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             EEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       115 IVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ||||| .|+++|..|+++|++|+|+|+++.++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            78965 69999999999999999999998765

...

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.23  E-value=0.014  Score=60.80  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .+++..+...|.+.+.+.|++++.+++|+++..++++++ |.+.+| +++|+.||-|+|.+|.-
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            489999999999999999999999999999998777664 666555 89999999999999874

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.21  E-value=0.00027  Score=73.00  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=27.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~  143 (584)
                      ||+||||+| .|+++|..||+.| .+|+|||+.+.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            899999965 6888899999997 79999999875

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.20  E-value=0.002  Score=70.38  Aligned_cols=107  Identities=14%  Similarity=0.118  Sum_probs=67.3

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ..+||||||| +|+.+|..|.+.+++|+|||+++..-    |.  + .+...                   -        
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~~--~-~l~~~-------------------~--------   55 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----FT--P-LLPQT-------------------T--------   55 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----hh--h-hHHHh-------------------c--------
Confidence            5799999987 68887778887789999999876311    10  0 00000                   0        


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--------cCCcEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~--------~~G~~i~ArlVIdADG~~  260 (584)
                      ...          .+.+.+..-+.+.+...++++. ..+|++|+.++..+++..        .+|.++.+|.||-|+|..
T Consensus        56 ~g~----------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~  124 (424)
T PTZ00318         56 TGT----------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR  124 (424)
T ss_pred             ccC----------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence            000          1111222223444545566654 468999988777776632        346689999999999998


Q ss_pred             h
Q 007945          261 S  261 (584)
Q Consensus       261 S  261 (584)
                      .
T Consensus       125 ~  125 (424)
T PTZ00318        125 P  125 (424)
T ss_pred             c
Confidence            5

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.18  E-value=0.0044  Score=68.20  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=74.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..+++.|.+|.++++.+..-.                                          . 
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~-  204 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------G-  204 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------c-
Confidence            58999965 699999999999999999997642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 +++ .+.+.+.+.+.+.|++++.+++++++..+++++.|++.+|+++.++.||-|.|.....
T Consensus       205 -----------~d~-~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       205 -----------FDD-DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             -----------cCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                       011 1233445566778999999999999987777777887788899999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=97.17  E-value=0.0046  Score=69.11  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=75.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..+++.|.+|.++++.+.+-.                                          . 
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~-  241 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------------G-  241 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------------c-
Confidence            69999965 699999999999999999997642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 +|+ .+.+.+.+.+.+.|++++.+++++++..++++++|.+.+|+++.++.||-|.|......
T Consensus       242 -----------~d~-~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        242 -----------FDD-EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             -----------cCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence                       011 12344555667789999999999999877777888877788999999999999887653

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.15  E-value=0.0004  Score=77.28  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCC-----cEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G-----~~i~ArlVIdADG~~  260 (584)
                      .|-+.|.+.++++|++|+.+++|++|..+++.+ -|.+.++     +++.||.||-+.-..
T Consensus       233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            356678888888899999999999999887743 2333343     579999999886653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.15  E-value=0.00083  Score=78.79  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ..||+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            579999995 57999999999999999999987543

>PRK06116 glutathione reductase; Validated

Probab=97.14  E-value=0.0052  Score=67.63  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-.                               .            
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  205 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G------------  205 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c------------
Confidence            69999965 799999999999999999997642100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .++ .+.+.+.+.+.+.|++++.++++.++..++++ +.|.+.+|+++.++.||-|.|......
T Consensus       206 -----------~~~-~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        206 -----------FDP-DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             -----------cCH-HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence                       000 12344556667789999999999999876655 778887888999999999999876543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.12  E-value=0.0052  Score=67.78  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.+|++.+.+-.                                          . 
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------~-  204 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------------S-  204 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------------c-
Confidence            69999976 699999999999999999998742110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC-cEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G-~~i~ArlVIdADG~~S~v~  264 (584)
                                 +|+ .+.+.+.+.+.+.|++++.++.++++..++++ +.|.+.+| +++.++.||-|.|......
T Consensus       205 -----------~d~-~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       205 -----------FDS-MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             -----------cCH-HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence                       011 13345556677789999999999999765544 66777777 5799999999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.11  E-value=0.0052  Score=68.00  Aligned_cols=97  Identities=24%  Similarity=0.338  Sum_probs=72.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+..-+                                          . 
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------~-  210 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP------------------------------------------N-  210 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------c-
Confidence            69999975 799999999999999999997641100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~ArlVIdADG~~S~v  263 (584)
                                 .| ..+...+.+.+++.|++++.+++++++..+++.+.+.+.  +|  +++.++.||-|.|.....
T Consensus       211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence                       01 112344556677789999999999999876666666554  55  479999999999988765

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.08  E-value=0.008  Score=66.58  Aligned_cols=98  Identities=18%  Similarity=0.272  Sum_probs=75.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.+|++.+....                                          . 
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  215 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------------G-  215 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------------C-
Confidence            58999965 799999999999999999997642110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .++ .+...+.+.+.+.|++++.++++++++.+++++.|.+.+|+++.++.||-|.|......
T Consensus       216 -----------~d~-~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        216 -----------EDA-DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             -----------CCH-HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence                       000 12344556667789999999999999877778888887888999999999999987653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.05  E-value=0.0046  Score=72.90  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|||+.+..-       .                                    .
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------~------------------------------------~  178 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------A------------------------------------K  178 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------h------------------------------------h
Confidence            68999976 69999999999999999999764110       0                                    0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql  267 (584)
                      .          +|+ .+.+.+.+.+++.|++++.++.++++..++....|.+.+|+++.+++||-|.|....  +++..
T Consensus       179 ~----------ld~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~  246 (785)
T TIGR02374       179 Q----------LDQ-TAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA  246 (785)
T ss_pred             h----------cCH-HHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence            0          001 123445566677899999999999886554445677888999999999999998743  55544

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.05  E-value=0.0023  Score=69.18  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=68.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .+||||||| +|+.+|..|+++|.  +|+|||+.+...-.+. .++..-   +               ...     .   
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~~---~---------------~~~-----~---   56 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKSM---L---------------LED-----S---   56 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHHH---H---------------CCC-----C---
Confidence            489999975 68888889999887  7999998864332211 122110   0               000     0   


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       ....   .    ..+.        +...+.|++++.++.|+.++.+..  +|.+.+|+++.++.||-|+|...
T Consensus        57 -~~~~---~----~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         57 -PQLQ---Q----VLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             -cccc---c----cCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence             0000   0    0111        123356899999999999876543  45566888999999999999886

>PRK06370 mercuric reductase; Validated

Probab=97.01  E-value=0.0077  Score=66.57  Aligned_cols=98  Identities=14%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+....                                          .
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------------------------------------------R  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------------------------------------------c
Confidence            368999965 699999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--C-CcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~-G~~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+.+.|++++.++++.++..+++++.|.+.  + +.++.++.||-|.|.....
T Consensus       210 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        210 ------------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             ------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence                        00 012344556667789999999999999877666655542  3 4579999999999987654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.00  E-value=0.0026  Score=67.03  Aligned_cols=35  Identities=34%  Similarity=0.552  Sum_probs=28.2

Q ss_pred             CCccEEEEcchHHHHH-HHHHHhCCCeEEEEcCCCC
Q 007945          109 GTFDVIVCGGTLGIFI-ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       109 ~~yDVVIVGGg~Gl~~-Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .+|||+|||||+|+.. |...|+.|++.+.||++..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence            3799999998765555 5588899999999998653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.00  E-value=0.0034  Score=74.81  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            469999995 579999999999999999999886543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.98  E-value=0.0091  Score=66.28  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=73.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+....                                          . 
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  221 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------A-  221 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------c-
Confidence            78999965 699999999999999999998642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G--~~i~ArlVIdADG~~S~v~  264 (584)
                                 .| ..+.+.+.+++.+.|++++.+++++++..+++++.|.+.+  |  +++.++.||-|.|..+...
T Consensus       222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence                       01 1233445556667899999999999998777777776654  3  4799999999999887643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.97  E-value=0.002  Score=71.12  Aligned_cols=35  Identities=31%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+..
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            479999996 57999999999999999999998643

>TIGR02734 crtI_fam phytoene desaturase

Probab=96.96  E-value=0.00062  Score=75.92  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      .+.+.|.+.+++.|++++.+++|+++..+++. +.|++.+|+++.|+.||-|.+....+.+.
T Consensus       220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l  281 (502)
T TIGR02734       220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRL  281 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHh
Confidence            46678888888899999999999999888766 45788888899999999988876655543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02053 MerA mercuric reductase

Probab=96.93  E-value=0.01  Score=65.52  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.|+|+.+..-.                                          .
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP------------------------------------------R  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC------------------------------------------c
Confidence            369999965 799999999999999999998742100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEccEEEEecCCChHHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~~i~ArlVIdADG~~S~v~  264 (584)
                                  .|+ .+...+.+.+.+.|++++.+++++++..+++.+.+++.+   ++++.++.||-|.|..+...
T Consensus       205 ------------~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       205 ------------EEP-EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             ------------cCH-HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence                        001 122344556667799999999999998766666665532   35799999999999876543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.93  E-value=0.011  Score=64.70  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+..-.                                          . 
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  195 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP------------------------------------------R-  195 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC------------------------------------------C-
Confidence            69999975 799999999999999999998752100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.++++++++.+++.+.+.. +++++.++.||-|.|.....
T Consensus       196 -----------~~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        196 -----------EE-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence                       00 01223445566778999999999999987666666654 56789999999999998654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.91  E-value=0.011  Score=65.16  Aligned_cols=97  Identities=20%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..+++.|.+|.++|+.+....                                          . 
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------~-  208 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------------------------------G-  208 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------------------------------c-
Confidence            69999965 799999999999999999998742100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.++++++++.++..+++...++ .++.+++||-|.|..+.+
T Consensus       209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence                       00 11234455667778999999999999976665555554322 379999999999988765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.90  E-value=0.0018  Score=78.10  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=31.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            479999995 679999999999999999999886443

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.89  E-value=0.011  Score=65.12  Aligned_cols=98  Identities=18%  Similarity=0.333  Sum_probs=76.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -++||||| +|+=.|..+++.|.+|+|||+.+..-+                                          . 
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------------------------------~-  211 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------------------------------G-  211 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC------------------------------------------c-
Confidence            49999975 799999999999999999998862110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+-+.+.+.+++.|..++.+++++.++..++++.+++++|.  +++|+.|+-|.|+...+-
T Consensus       212 -----------~D~-ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~  275 (454)
T COG1249         212 -----------EDP-EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD  275 (454)
T ss_pred             -----------CCH-HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence                       111 23455566666667899999999999888777888887765  799999999999886554

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.88  E-value=0.012  Score=65.78  Aligned_cols=97  Identities=18%  Similarity=0.243  Sum_probs=73.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|+++.....     .                                       
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-----~---------------------------------------  219 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-----G---------------------------------------  219 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-----c---------------------------------------
Confidence            69999975 79999999999999999998632100     0                                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+.+.+.+.+++.|++++.++.+.++...++.+.|.+.+|+++.++.||-|.|..+...
T Consensus       220 -----------~d~-~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        220 -----------FDR-QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             -----------CCH-HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence                       000 12244555667789999999999998766666677777888899999999999987643

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.88  E-value=0.0085  Score=64.66  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      +..+-+.+.+.+.|++++..|+|.++...++.+ .|.+++|.+|.||.||-|-|+.+.
T Consensus       174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            456778899999999999999999999988754 477778999999999999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.88  E-value=0.0086  Score=71.02  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .++||||| +|+-+|..|++.|.+|.|||+.+..-.                                           .
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------------------~  183 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------------------E  183 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------------------h
Confidence            58999976 699999999999999999997641000                                           0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCChH--HHhH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ  266 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S~--v~rq  266 (584)
                      .          +|+ ..-+.+.+++++.|++++.++.++++..+++  ...|.+.+|+++.+++||-|.|....  +++.
T Consensus       184 ~----------ld~-~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~  252 (847)
T PRK14989        184 Q----------LDQ-MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ  252 (847)
T ss_pred             h----------cCH-HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence            0          011 1234556667788999999999999865432  34577788999999999999998765  4444


Q ss_pred             hc
Q 007945          267 IR  268 (584)
Q Consensus       267 l~  268 (584)
                      .+
T Consensus       253 ~G  254 (847)
T PRK14989        253 CG  254 (847)
T ss_pred             cC
Confidence            43

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.87  E-value=0.014  Score=64.67  Aligned_cols=97  Identities=16%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..+++.|.+|.+||+.+..-.                                          . 
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------~-  212 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------G-  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------C-
Confidence            68999965 799999999999999999997641100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~--G~~i~ArlVIdADG~~S~v  263 (584)
                                 +|+ .+.+.+.+.+.+.|++++.+++++++..+++++.+.+.   +  ++++.++.||-|.|..+..
T Consensus       213 -----------~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        213 -----------TDT-ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             -----------CCH-HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence                       011 12344556677789999999999999876667766543   2  3579999999999988654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.85  E-value=0.0097  Score=63.64  Aligned_cols=98  Identities=21%  Similarity=0.321  Sum_probs=75.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -+|+|+|| .+|+.+|..++++|++|+++|+.+.++..                                          
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------------------------------------  174 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------------------------------------  174 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------------------------------------
Confidence            59999996 57999999999999999999988643210                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~---V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                        +.     .     ..+-+.+.+.+.+.|++++.++++.+++...+...   +...++.++.+++++-+.|..-.
T Consensus       175 --~~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         175 --LL-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             --hh-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence              00     0     12345566677778899999999999987766543   45667889999999999998873

>PRK07846 mycothione reductase; Reviewed

Probab=96.84  E-value=0.015  Score=64.22  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=71.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-.                                          .
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------------~  204 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------------H  204 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------c
Confidence            369999965 799999999999999999998742100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                  .|++ +.+.+.+ ..+.|++++.++++++++.+++++.|++.+|+++.++.||-|.|..+...
T Consensus       205 ------------~d~~-~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        205 ------------LDDD-ISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD  265 (451)
T ss_pred             ------------cCHH-HHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence                        0011 1122222 23457899999999999877667778887888999999999999987653

>PRK02106 choline dehydrogenase; Validated

Probab=96.83  E-value=0.0012  Score=74.87  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             CccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr-~GlrVlLIEr~~  142 (584)
                      +||+|||||| +|+.+|..||+ .|++|+|||+.+
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            6999999965 69999999999 899999999995

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.82  E-value=0.01  Score=63.64  Aligned_cols=105  Identities=10%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|||||||| +|+.+|..|.+.  ..+|+||++.+.....+. .++.    .+                          .
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~~----~~--------------------------~   51 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLSH----VF--------------------------S   51 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCcH----HH--------------------------h
Confidence            589999975 688888788764  668999998763221111 0100    00                          0


Q ss_pred             CCCcccccccccceeCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~-~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       +           ..+...+.. ...+.+++.|++++.+++|++++.+..  +|++ +++++.+|.||-|+|...
T Consensus        52 -~-----------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         52 -Q-----------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             -C-----------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence             0           011111111 122334567899999999999876544  4444 577899999999999875

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.81  E-value=0.012  Score=64.22  Aligned_cols=101  Identities=22%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-.                                           
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------------------  174 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------------------  174 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence            379999965 699999999999999999997752100                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql  267 (584)
                      ..          .+ ..+.+.+.+.+++.|++++.++.+.++..++ .+ +.+.+|+++.++.||-|.|....  +.+.+
T Consensus       175 ~~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (427)
T TIGR03385       175 KL----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDS  241 (427)
T ss_pred             cc----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence            00          00 1223445566677899999999999986543 33 45567889999999999998743  44443

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02576 protoporphyrinogen oxidase

Probab=96.79  E-value=0.0015  Score=72.71  Aligned_cols=38  Identities=34%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKG  145 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~~  145 (584)
                      ..++||+||||| +|+++|..|+++ |++|+|+|+....|
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            346899999976 699999999999 99999999987644

>PRK14727 putative mercuric reductase; Provisional

Probab=96.76  E-value=0.017  Score=64.23  Aligned_cols=96  Identities=25%  Similarity=0.264  Sum_probs=72.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++++.....                                           . 
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------------------------------------------~-  225 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------------------------------------------R-  225 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------------------------------------------c-
Confidence            69999975 69999999999999999998642100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+.+.+.+.+.+.|++++.+++++++..+++.++|.+.++ ++.++.||-|.|..+...
T Consensus       226 -----------~d~-~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        226 -----------EDP-LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH  286 (479)
T ss_pred             -----------chH-HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence                       001 1234455666778999999999999987777777776544 699999999999997654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.76  E-value=0.0016  Score=69.96  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      |||+||||| +|+++|..|++.|.+|+|||++...+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            799999965 69999999999999999999977554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.75  E-value=0.015  Score=64.52  Aligned_cols=97  Identities=21%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.+||+.+...+                                          . 
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------~-  218 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP------------------------------------------T-  218 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC------------------------------------------c-
Confidence            69999975 799999999999999999998752100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEE-EEEcCC--cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV-LLLAEG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~-V~~~~G--~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.+++++++... ++++. +.+.+|  +++.++.||-|.|.....
T Consensus       219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence                       00 112344555667789999999999998752 34443 334455  369999999999998654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.74  E-value=0.0058  Score=72.07  Aligned_cols=45  Identities=24%  Similarity=0.371  Sum_probs=36.9

Q ss_pred             HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       215 a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +.+.|++++.+++|++++.+.  .+|.+.+|+++.+|.||-|+|...
T Consensus        64 ~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        64 YEKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence            355789999999999987654  356667888999999999999864

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.73  E-value=0.0016  Score=73.26  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      |||+|||+ ++|+++|..||++|++|++||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            79999995 679999999999999999999998754

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07208 hypothetical protein; Provisional

Probab=96.72  E-value=0.0017  Score=71.82  Aligned_cols=57  Identities=16%  Similarity=0.298  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc--CCc--EEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~--V~~~--~G~--~i~ArlVIdADG~~S~  262 (584)
                      .|.+.|.+.+.+.|++|+.+++|+++..++++++  +...  +|+  ++.|+.||-|.-....
T Consensus       219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l  281 (479)
T PRK07208        219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL  281 (479)
T ss_pred             hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence            3556777888888999999999999998877643  3322  343  6999999987665433

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.71  E-value=0.0096  Score=65.39  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=66.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .||||||| +|+.+|..|++.  +.+|+|||+.+...-..+ .+.     .+              +.     ..+    
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~-~lp-----~~--------------~~-----~~~----   53 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-ALP-----YY--------------IG-----EVV----   53 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC-Ccc-----hh--------------hc-----Ccc----
Confidence            69999975 688888888876  789999999864321110 000     00              00     000    


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-Cc--EEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~--~i~ArlVIdADG~~S~  262 (584)
                      ...   ...  ..++++       +...+.|++++.+++|++++.++..+.+...+ ++  ++.+|.||-|+|....
T Consensus        54 ~~~---~~~--~~~~~~-------~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~  118 (438)
T PRK13512         54 EDR---KYA--LAYTPE-------KFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN  118 (438)
T ss_pred             CCH---HHc--ccCCHH-------HHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence            000   000  001111       11234689999999999998877766666432 22  4789999999998753

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.71  E-value=0.017  Score=64.48  Aligned_cols=98  Identities=19%  Similarity=0.305  Sum_probs=70.3

Q ss_pred             cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LA---r~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|+||||| .|+-+|..++   +.|.+|.|||+.+..-+                                         
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-----------------------------------------  227 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-----------------------------------------  227 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-----------------------------------------
Confidence            48899965 6888886554   34999999987642100                                         


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                   .+| ..+.+.+.+.+++.|++++.++.++++..++++ ..|.+.+|+++.++.||-|.|......
T Consensus       228 -------------~~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       228 -------------GFD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             -------------ccC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence                         011 123345566677789999999999999766554 567777788999999999999887653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.67  E-value=0.023  Score=62.41  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+|+||| .|+-+|..|++.|.+|.|+|+.+...+                                          . 
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  196 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP------------------------------------------R-  196 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC------------------------------------------C-
Confidence            69999965 699999999999999999998641100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..+++.++++..++ ++.++.||-|.|..+..
T Consensus       197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                       00 11234456677788999999999999987766777766444 58999999999988754

>PRK14694 putative mercuric reductase; Provisional

Probab=96.64  E-value=0.023  Score=62.90  Aligned_cols=95  Identities=18%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++++.....                                           . 
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~-  215 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-------------------------------------------Q-  215 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-------------------------------------------C-
Confidence            58999965 79999999999999999998632100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 .++ .+.+.+.+.+++.|++++.++.+.++..+++.+.+.+. +.++.++.||-|.|..+..
T Consensus       216 -----------~~~-~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        216 -----------EDP-AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN-AGTLRAEQLLVATGRTPNT  275 (468)
T ss_pred             -----------CCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CCEEEeCEEEEccCCCCCc
Confidence                       001 12344566667789999999999999876666666654 4479999999999998764

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.64  E-value=0.0022  Score=66.27  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=32.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .||.+|||+| .|+.+|-.+++.|.+|++|||++.+|
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            3899999977 59999999999999999999999876

>PRK13748 putative mercuric reductase; Provisional

Probab=96.63  E-value=0.022  Score=64.47  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=70.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.||++.....                                           . 
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------------------------------------------~-  307 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-------------------------------------------R-  307 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-------------------------------------------c-
Confidence            59999975 69999999999999999998742100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 .|+ .+-+.+.+.+++.|++++.++.+.++..+++.+++.+.++ ++.++.||-|.|.....
T Consensus       308 -----------~d~-~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        308 -----------EDP-AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             -----------cCH-HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence                       000 1223445566678999999999999987766666766444 69999999999987654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.60  E-value=0.024  Score=63.11  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++++....+                                           . 
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-------------------------------------------~-  217 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------------------------------------------G-  217 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-------------------------------------------c-
Confidence            68999975 79999999999999999998631100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~S~v  263 (584)
                                 +|+ .+.+.+.+.+++.|++++.++.+.++...++.+.|++.++   +++.++.||-|.|.....
T Consensus       218 -----------~d~-~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       218 -----------FDQ-DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             -----------cCH-HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence                       000 1223445666778999999999999877666666776554   379999999999987554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.56  E-value=0.025  Score=62.01  Aligned_cols=102  Identities=12%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-.                                           
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------------  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------------------  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------------------
Confidence            369999975 699999999999999999987641000                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql  267 (584)
                      ..          ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.++.||-|.|..+  .+.+..
T Consensus       187 ~~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~  254 (444)
T PRK09564        187 DS----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDT  254 (444)
T ss_pred             hh----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhc
Confidence            00          01 12344566677788999999999999864333333444 455799999999999864  344444

>TIGR03452 mycothione_red mycothione reductase

Probab=96.56  E-value=0.031  Score=61.67  Aligned_cols=97  Identities=21%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.+||+.+....            .                              
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------------~------------------------------  207 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------------H------------------------------  207 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------------c------------------------------
Confidence            369999965 799999999999999999997642100            0                              


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                  ++++ +.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||-|.|.....
T Consensus       208 ------------~d~~-~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       208 ------------LDED-ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             ------------cCHH-HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                        0000 1111222 2235789999999999987777777888778899999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.51  E-value=0.011  Score=62.93  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+.+|..|++.|++|+++|+.+.++
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            369999996 579999999999999999999986543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.50  E-value=0.019  Score=63.13  Aligned_cols=92  Identities=15%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|+++.+....            .                               
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------~-------------------------------  186 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK------------L-------------------------------  186 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch------------h-------------------------------
Confidence            69999975 699999999999999999998642110            0                               


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                                 ++ ..+.+.+.+.+++.|++++.++++++++.  +  .|++.+|+++.++.||-|.|....
T Consensus       187 -----------~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        187 -----------MD-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             -----------cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence                       00 11234455666778999999999999852  2  455667888999999999998753

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.45  E-value=0.003  Score=69.50  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=35.7

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      ++|+.+++|++|..++++++|++.+|+++.|+.||-|.-..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            57899999999999888899988888889999999887643

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.42  E-value=0.016  Score=68.87  Aligned_cols=104  Identities=14%  Similarity=0.197  Sum_probs=66.5

Q ss_pred             cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr----~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .||||||| +|+.+|..|.+    .+++|+||++.+...-.+. .++.     .                         |
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~-----~-------------------------~   53 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS-----Y-------------------------F   53 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH-----h-------------------------H
Confidence            79999965 68888888864    3689999998875432211 0110     0                         0


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .+. .            .+.+.....+.+.+.|++++.+++|++++.+.  .+|.+.+|+++.++.||-|+|...
T Consensus        54 ~~~-~------------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         54 SHH-T------------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             cCC-C------------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence            000 0            00000011123345789999999999886643  456677888999999999999864

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.39  E-value=0.0029  Score=71.40  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..+||+||||+ .+|+++|..|+..|++|+|||+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            44799999995 579999999999999999999985

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.27  E-value=0.0046  Score=67.59  Aligned_cols=55  Identities=22%  Similarity=0.262  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCC--cEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEG--KILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V-~~~~G--~~i~ArlVIdADG~~  260 (584)
                      ++.+.|.+++++.|++++.+++|+++..+++++++ ...++  .+++|+.||-|+|..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            35667888888899999999999999887776654 33344  359999999999975

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.27  E-value=0.0099  Score=63.80  Aligned_cols=62  Identities=16%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+|+..+...|.+.+.+ |++++.+++|++++.+++++.|++.+|.+++|+.||.|.|.+|.
T Consensus       130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            347999999999999988 99999999999999888888888888888999999999999986

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.27  E-value=0.041  Score=61.11  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=70.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|||+.+..-+.                                           
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-------------------------------------------  212 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-------------------------------------------  212 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------------------------------
Confidence            69999965 6999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G--~~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+.+.+.+.+.+. +.++.++.++++..+++++.+++.+  +  +++.++.||-|.|..+...
T Consensus       213 -----------~d~-~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        213 -----------ADK-DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             -----------CCH-HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence                       001 1223344455555 7889999999998777777776643  2  4699999999999987653

>PTZ00058 glutathione reductase; Provisional

Probab=96.26  E-value=0.05  Score=61.72  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..+++.|.+|.++|+.+..-+                                            
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~--------------------------------------------  274 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR--------------------------------------------  274 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc--------------------------------------------
Confidence            58999975 699999999999999999997641100                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC-CcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE-GKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~-G~~i~ArlVIdADG~~S~v~  264 (584)
                                .+|+ .+.+.+.+.+++.|++++.++.+.++..+++ ++.+...+ ++++.++.||-|.|....+.
T Consensus       275 ----------~~d~-~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        275 ----------KFDE-TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             ----------cCCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence                      0111 1234455566778999999999999976544 45555544 45799999999999875543

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.25  E-value=0.019  Score=61.68  Aligned_cols=66  Identities=15%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCCh-----------HHHhHhcCC
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS-----------PVVKQIRSG  270 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S-----------~v~rql~~~  270 (584)
                      ....+.+.|..++.+.|++++.+++|+++  +++++.|.+.+ +.+++|+-||-|+|..|           .++++++..
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~  161 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS  161 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence            45667889999999999999999999998  44456677654 35799999999999987           677777643

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.24  E-value=0.0052  Score=73.45  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            579999995 579999999999999999999987543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.19  E-value=0.0051  Score=66.61  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .-+|+||||| +|+++|..||+.|++|.|+||.+..|
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            4589999976 69999999999999999999999865

>PLN02268 probable polyamine oxidase

Probab=96.19  E-value=0.0052  Score=67.18  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=36.0

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      .+..|+.+++|+++...+++++|++.+|+++.|+.||-|.
T Consensus       209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~  248 (435)
T PLN02268        209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV  248 (435)
T ss_pred             ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence            3567999999999999989999999888899999999996

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.0053  Score=63.59  Aligned_cols=33  Identities=42%  Similarity=0.623  Sum_probs=30.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +|||+||||| +|+++|..|+++|.++.+|-+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            6999999998 59999999999999999998875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.14  E-value=0.0059  Score=68.50  Aligned_cols=38  Identities=29%  Similarity=0.376  Sum_probs=33.3

Q ss_pred             CCCCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 007945          107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (584)
Q Consensus       107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~  144 (584)
                      ....||.|||||| +|+.+|+.|++. -++|+|||+...+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4557999999975 799999999986 7899999999765

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.13  E-value=0.021  Score=60.90  Aligned_cols=144  Identities=16%  Similarity=0.248  Sum_probs=86.6

Q ss_pred             CCccEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCc-eee
Q 007945          109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RCG  185 (584)
Q Consensus       109 ~~yDVVIVG-Gg~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~-~v~  185 (584)
                      ..+|+|.|| ||.-+++|+.|... +++++.+||.+....+..--+...+++.-.-.++.+          --+|. ..+
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVT----------l~~PTs~yS   73 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVT----------LVDPTSPYS   73 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhcc----------ccCCCCchH
Confidence            369999999 89899999999966 589999999986543322123222222111111111          01111 122


Q ss_pred             ecC----CCcccccccc---cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCe-EE--EEEcCCcEEEccEEE
Q 007945          186 FEG----KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENA-AV--LLLAEGKILSSHLII  254 (584)
Q Consensus       186 f~~----~~~l~~~~~l---~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~g-v~--V~~~~G~~i~ArlVI  254 (584)
                      |-+    ..+++  ..+   +..+.|....+.|...+... -.++.+++|++|..- .|. ..  +.+.++.+++||=||
T Consensus        74 FLNYL~~h~RLy--~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lV  150 (436)
T COG3486          74 FLNYLHEHGRLY--EFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLV  150 (436)
T ss_pred             HHHHHHHcchHh--hhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEE
Confidence            211    11221  111   23467888888888887766 678889999977322 222 22  445567799999999


Q ss_pred             EecCCChHHHh
Q 007945          255 DAMGNFSPVVK  265 (584)
Q Consensus       255 dADG~~S~v~r  265 (584)
                      -..|..-.|-.
T Consensus       151 lg~G~~P~IP~  161 (436)
T COG3486         151 LGVGTQPYIPP  161 (436)
T ss_pred             EccCCCcCCCh
Confidence            99998755443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.11  E-value=0.054  Score=59.23  Aligned_cols=51  Identities=20%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +.+.+.+.+++.|++++.++++.++.  ++.  |.+++|+++.+++||-|.|...
T Consensus       230 ~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        230 LRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEccCCCC
Confidence            34555667778899999999999874  343  4567889999999999999653

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.09  E-value=0.0065  Score=67.76  Aligned_cols=36  Identities=31%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+||||||| +|+++|-.|.+.|++|+|+|.+...|
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            6899999976 69999999999999999999777643

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.09  E-value=0.0062  Score=63.12  Aligned_cols=34  Identities=38%  Similarity=0.499  Sum_probs=30.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      ++||||||+| +|+.+|++||.+|.+|+++|....
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            6899999977 699999999999999999997754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.97  E-value=0.029  Score=61.88  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G  169 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG  169 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            579999996 579999999999999999999987543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01810 betA choline dehydrogenase

Probab=95.96  E-value=0.006  Score=68.71  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~  143 (584)
                      |+|||||| +|+.+|..||+.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            89999965 6999999999998 79999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.95  E-value=0.0088  Score=65.40  Aligned_cols=51  Identities=18%  Similarity=0.275  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCcEEEccEEEEec
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM  257 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~~i~ArlVIdAD  257 (584)
                      |-+.....++-.|+....++.+.++..++++..+.+ .+|++++|+.||+..
T Consensus       234 LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp  285 (438)
T PF00996_consen  234 LPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP  285 (438)
T ss_dssp             HHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred             HHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence            444555556667999999999999998766554433 378899999999543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02676 polyamine oxidase

Probab=95.95  E-value=0.0084  Score=66.85  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhC------CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~------G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .|.+.|.+.+.+.      +..|..+++|++|..++++|+|++.+|++++|+.||.|....
T Consensus       225 ~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~  285 (487)
T PLN02676        225 SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG  285 (487)
T ss_pred             HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence            3445555544332      257999999999999999999999999999999999998644

>PLN02785 Protein HOTHEAD

Probab=95.93  E-value=0.0077  Score=68.64  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      ...||+|||||| +|+.+|+.|++ +++|+|||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            336999999965 79999999999 699999999974

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.90  E-value=0.018  Score=63.87  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||+|||| ++|+++|..|+++|++|+++|+.+..+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            479999995 579999999999999999999987654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.0078  Score=66.06  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      -|+|+||| +|+++|..||.+|++|+|.|+++..|
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            48999987 69999999999999999999999865

>PLN02546 glutathione reductase

Probab=95.87  E-value=0.082  Score=59.97  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=69.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.|+++.+....                               .            
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-------------------------------~------------  290 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-------------------------------G------------  290 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-------------------------------c------------
Confidence            68999975 699999999999999999987641100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 +| ..+.+.+.+.+.+.|++++.++.+.++...++ .+.|.+.+++...++.||-|.|......
T Consensus       291 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        291 -----------FD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             -----------cC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence                       01 12234455666778999999999999876433 4556554454455899999999987653

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.85  E-value=0.064  Score=56.19  Aligned_cols=129  Identities=19%  Similarity=0.303  Sum_probs=74.0

Q ss_pred             CCCccEEEEcchHHHHHHH-HHHhCCCeEEEEcCC-CCCCC---------cccccCCHHH--HHHHHHcCCCcccccchh
Q 007945          108 VGTFDVIVCGGTLGIFIAT-ALSFKGLRVAIVERN-TLKGR---------EQEWNISRKE--LLELVESGILVEDDIDEA  174 (584)
Q Consensus       108 ~~~yDVVIVGGg~Gl~~Aa-~LAr~GlrVlLIEr~-~~~~~---------~r~w~Is~~~--l~~L~~lGl~~~~ele~~  174 (584)
                      +.+||.+|||||.|+.+++ ..|..|.+|.|+|-. ...+.         +.-|+.+...  ++.-.+-|+-.+      
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~------   91 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN------   91 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc------
Confidence            4479999999998665555 667889999999976 33332         1236554321  111111121100      


Q ss_pred             hhcccCCceeeecCCCcccccccccce-e--CH----HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-
Q 007945          175 TATKFNPNRCGFEGKGEIWVEDILNLG-V--SP----AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-  246 (584)
Q Consensus       175 i~~~~~~~~v~f~~~~~l~~~~~l~~~-v--d~----~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~-  246 (584)
                             ....|            ++. +  .+    .+|.......+.++++++.++..-   ..++..+.|+..||+ 
T Consensus        92 -------~~~~f------------dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~  149 (478)
T KOG0405|consen   92 -------EEGSF------------DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTK  149 (478)
T ss_pred             -------cccCC------------cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCee
Confidence                   00111            110 0  01    134444455556667777776421   234667888887874 


Q ss_pred             -EEEccEEEEecCCChHHH
Q 007945          247 -ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       247 -~i~ArlVIdADG~~S~v~  264 (584)
                       .++|+-+.-|.|....+-
T Consensus       150 ~~Ytak~iLIAtGg~p~~P  168 (478)
T KOG0405|consen  150 IVYTAKHILIATGGRPIIP  168 (478)
T ss_pred             EEEecceEEEEeCCccCCC
Confidence             389999999999886544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.79  E-value=0.015  Score=67.22  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+++|..|++.|++|+|+|+.+..+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            469999995 679999999999999999999987644

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=95.77  E-value=0.013  Score=63.73  Aligned_cols=62  Identities=29%  Similarity=0.358  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC--cEEEccEEEEecCCC-hH-HHhHh
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI  267 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G--~~i~ArlVIdADG~~-S~-v~rql  267 (584)
                      +|.+.|.+++++.|++++.+++|+++..++++++ |.+.++  .+++|+-||-|+|.+ |. +.+++
T Consensus       264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            3566788888888888888888988887777665 444454  478899999999988 76 55554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.75  E-value=0.11  Score=60.02  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=66.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.+||+.+....                                          . 
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------------------------------------~-  350 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------------------------------------L-  350 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------------------------------------c-
Confidence            68999975 699999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------cEEEccE
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL  252 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a-~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~-------G--------~~i~Arl  252 (584)
                                 +|+ .+.+.+.+.+ .+.|++++.++.|.++..++++  ++|++.+       +        +++.++.
T Consensus       351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~  418 (659)
T PTZ00153        351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS  418 (659)
T ss_pred             -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence                       011 1122233332 3578999999999999765543  5555421       1        2799999


Q ss_pred             EEEecCCChHH
Q 007945          253 IIDAMGNFSPV  263 (584)
Q Consensus       253 VIdADG~~S~v  263 (584)
                      ||-|.|....+
T Consensus       419 VlvAtGr~Pnt  429 (659)
T PTZ00153        419 CLVATGRKPNT  429 (659)
T ss_pred             EEEEECcccCC
Confidence            99999988654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.69  E-value=0.022  Score=63.16  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+++|..|+++|++|+++|+.+..+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g  177 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG  177 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            479999995 679999999999999999999987543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.67  E-value=0.012  Score=64.70  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCc-----EEEccEEEEecCCCh
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS  261 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v-~V~~~~G~-----~i~ArlVIdADG~~S  261 (584)
                      +-+.|.+.+++.|++|+.+++|++|..++++ + .|++.+|+     ++.||.||-|...+.
T Consensus       215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~  276 (453)
T TIGR02731       215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI  276 (453)
T ss_pred             HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence            3456666676779999999999999875554 3 35665554     799999999986643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.66  E-value=0.15  Score=56.31  Aligned_cols=97  Identities=21%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.....                                           
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------------  207 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-------------------------------------------  207 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------------------------------------------
Confidence            69999975 6999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC--CcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE--GKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~--G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+.+.+.+.+++. ++++.++++.++..+++ .++++..+  ++++.++.||-|.|......
T Consensus       208 -----------~d~-~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        208 -----------EDP-EVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             -----------hhH-HHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence                       001 1234445556667 89999999999976554 45554433  35799999999999875543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.66  E-value=0.067  Score=54.76  Aligned_cols=63  Identities=16%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---C-CcEEEccEEEEecCCChHH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~-G~~i~ArlVIdADG~~S~v  263 (584)
                      .|+|..|-+.+.+.+.+.|+.-+.-..|.++..+..++. |-.+   + .....++.+|-++|.+++-
T Consensus       143 qvhP~lFc~~i~sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk  210 (380)
T KOG2852|consen  143 QVHPYLFCHFILSEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK  210 (380)
T ss_pred             eeCHHHHHHHHHHHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence            488999999999999988754334446777753333322 2222   2 3457788999999999863

>PLN02568 polyamine oxidase

Probab=95.64  E-value=0.014  Score=65.99  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      |.+.|.+.+.  +..|+.+++|++|...+++++|++.+|++++|+.||-+.=
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP  293 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS  293 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence            4444444431  3479999999999999999999999998999999998753

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.53  E-value=0.03  Score=54.79  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=29.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~  145 (584)
                      .||||||+| +|+++|+..+++  .++|++||....|+
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            699999965 799999988843  89999999887665

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.51  E-value=0.022  Score=63.42  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=31.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr--~GlrVlLIEr~~~~~  145 (584)
                      ...|+|||| |+|+.+|..|++  .|++|.|+||.+.++
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            578999995 679999999986  799999999998765

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.48  E-value=0.014  Score=64.82  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---EE-EEEcCC---cEEEccEEEEecCCC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---AV-LLLAEG---KILSSHLIIDAMGNF  260 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~g---v~-V~~~~G---~~i~ArlVIdADG~~  260 (584)
                      +.+.|.+.+++.|++|+.+++|++|..++  ++   ++ |.+.+|   +++.||.||-|....
T Consensus       221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            34557778888999999999999998764  22   32 345433   569999999999876

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.47  E-value=0.032  Score=64.54  Aligned_cols=36  Identities=31%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+++|..|++.|++|+|+|+.+..+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG  229 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            479999995 679999999999999999999987643

>PRK10262 thioredoxin reductase; Provisional

Probab=95.43  E-value=0.12  Score=54.00  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~-  184 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E-  184 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence            79999976 699999999999999999998641100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcC------CcEEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE------GKILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~------G~~i~ArlVIdADG~~S  261 (584)
                                    ..+.+.+.+++.+.|++++.++.++++..+++++ .|++.+      .+++.++.||-|.|...
T Consensus       185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence                          0112334555566788999999999986554332 244332      13699999998888654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.40  E-value=0.041  Score=56.96  Aligned_cols=111  Identities=23%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             CCCCccEEEEcchH-HHHHHHHHHhC-CC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce
Q 007945          107 AVGTFDVIVCGGTL-GIFIATALSFK-GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR  183 (584)
Q Consensus       107 ~~~~yDVVIVGGg~-Gl~~Aa~LAr~-Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~  183 (584)
                      ...+|.|+|||||. |+.+|+.+.++ |- +|.+||....---...|.+-.+.+..|...+             + .   
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr-------------r-~---   98 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR-------------R-K---   98 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhcc-------------C-c---
Confidence            34579999999875 88889988854 43 7999987652111123544444443332111             0 0   


Q ss_pred             eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       184 v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                           ...+ +|.      +    ..++.+++.             +  .+++.-+|.+.+|++|+.|++|-|+|..-..
T Consensus        99 -----~a~l-iP~------~----a~wi~ekv~-------------~--f~P~~N~v~t~gg~eIsYdylviA~Giql~y  147 (446)
T KOG3851|consen   99 -----QASL-IPK------G----ATWIKEKVK-------------E--FNPDKNTVVTRGGEEISYDYLVIAMGIQLDY  147 (446)
T ss_pred             -----cccc-ccC------C----cHHHHHHHH-------------h--cCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence                 0000 010      0    022233332             2  3456667778899999999999999998655


Q ss_pred             Hh
Q 007945          264 VK  265 (584)
Q Consensus       264 ~r  265 (584)
                      -+
T Consensus       148 ~~  149 (446)
T KOG3851|consen  148 GK  149 (446)
T ss_pred             ch
Confidence            43

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.092  Score=51.90  Aligned_cols=116  Identities=20%  Similarity=0.299  Sum_probs=77.7

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .-.|+||| ||++-++|..+|++-++-+|+|--...+      |.+..  .     +.+..+++            .|++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~------i~pGG--Q-----LtTTT~ve------------NfPG   62 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG------IAPGG--Q-----LTTTTDVE------------NFPG   62 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC------cCCCc--e-----eeeeeccc------------cCCC
Confidence            45899999 6789999999999999999999543221      11100  0     00000111            1111


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                           .|+    ++.-..|.+.+++++.+.|.+|+..| |.+++....-.+|.+ +.+.++|+-||-|+|+..
T Consensus        63 -----FPd----gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~sskpF~l~t-d~~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   63 -----FPD----GITGPELMDKMRKQSERFGTEIITET-VSKVDLSSKPFKLWT-DARPVTADAVILATGASA  124 (322)
T ss_pred             -----CCc----ccccHHHHHHHHHHHHhhcceeeeee-hhhccccCCCeEEEe-cCCceeeeeEEEecccce
Confidence                 011    13334677889999999999987654 788888777777766 666899999999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.38  E-value=0.059  Score=58.35  Aligned_cols=105  Identities=20%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      --|||+||| .|+.+|..|+++  +.+|+||||+..--    |.   ..+-+              ...-.         
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl----~~---plL~e--------------va~g~---------   53 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL----FT---PLLYE--------------VATGT---------   53 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc----cc---hhhhh--------------hhcCC---------
Confidence            469999998 577777799986  49999999987421    10   00100              00000         


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                                    ++...+.--+.+.+.+.+..-+...+|++|+.+...  |+++++.++..|.+|-|.|..+
T Consensus        54 --------------l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          54 --------------LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSET  111 (405)
T ss_pred             --------------CChhheeccHHHHhcccCceEEEEEEEEEEcccCCE--EEeCCCccccccEEEEecCCcC
Confidence                          111111111223333344344555678898777654  5555677899999999999885

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.30  E-value=0.065  Score=58.05  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEccEEEEecCCC-hHHHhHh
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI  267 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~-~i~ArlVIdADG~~-S~v~rql  267 (584)
                      ++.....+.+++.|++++.++.|++++  ++++++  ++|. +|.|+.+|=|.|.. |++.+.+
T Consensus       210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~--~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         210 KLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTL--KDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEE--ccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            455566667788899999999999974  455544  4565 59999999999976 5577764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.28  E-value=0.035  Score=63.06  Aligned_cols=36  Identities=33%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .-+|+|||+ ++|+++|..|++.|++|+++|+.+..+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            358999995 689999999999999999999987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.27  E-value=0.03  Score=64.60  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||| ++|+++|..|++.|++|+++|+.+..+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            468999995 679999999999999999999998654

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.21  E-value=0.015  Score=62.62  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      +-.++.+-++++|++|+.+..|.+|..+++.++ |.++||++++++.||-=.+.+-.+-+.
T Consensus       266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL  326 (561)
T KOG4254|consen  266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL  326 (561)
T ss_pred             HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh
Confidence            345778888899999999999999998886554 888999999999999877766666443

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.024  Score=58.98  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             CCCccEEEEcchH-HHHHHHHHHhCCCeEEEEcCC
Q 007945          108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       108 ~~~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      +.+||.||||||. |+++|-..|..|.+|+++|--
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            4489999999875 777788999999999999943

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.09  E-value=0.2  Score=54.85  Aligned_cols=46  Identities=17%  Similarity=0.150  Sum_probs=35.9

Q ss_pred             EEEeCceEEEEEEe--CCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       221 ~i~~~t~v~~v~~~--~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      .....++++++...  ..+..+...+|....|+.+|-|+|+.-+....
T Consensus       122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~  169 (474)
T COG4529         122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP  169 (474)
T ss_pred             eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence            45566778887776  45677888889999999999999998766644

>PLN02529 lysine-specific histone demethylase 1

Probab=95.09  E-value=0.027  Score=65.60  Aligned_cols=38  Identities=16%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       219 G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      +..|+.+++|++|...+++|+|++ ++++++||.||-+-
T Consensus       366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV  403 (738)
T PLN02529        366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV  403 (738)
T ss_pred             cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence            456999999999999999999875 55689999999763

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.06  E-value=0.16  Score=55.28  Aligned_cols=96  Identities=23%  Similarity=0.324  Sum_probs=73.1

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~  191 (584)
                      |+++||| +|+-+|+.|.-.+.+|++|++.+.+-       .+                                     
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------~~-------------------------------------  251 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------PR-------------------------------------  251 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEccCccch-------hh-------------------------------------
Confidence            9999988 79999999998899999998764211       00                                     


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChH
Q 007945          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      +..          ..+.+...+.+++.|++++.++.+.++.-++++  ..|.+.+|+++.|++||-..|..+.
T Consensus       252 lf~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  252 LFG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             hhh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence            000          122344556667789999999999999877743  4588889999999999999887753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.97  E-value=0.22  Score=56.03  Aligned_cols=89  Identities=20%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+...                                            .
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~  389 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A  389 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence            79999976 69999999999999999998653100                                            0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~~---G--~~i~ArlVIdADG~~S  261 (584)
                                       ...+.+.+.+ .|++++.++.++++..+++.++ |++.+   +  +++.++.||-|.|...
T Consensus       390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence                             0112233333 5889999999999876545443 55543   2  4699999999988764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=94.70  E-value=0.039  Score=64.72  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ...||+||||| +|+++|..|++.|++|+|+|++..+|
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            35899999976 69999999999999999999987553

>PRK13984 putative oxidoreductase; Provisional

Probab=94.69  E-value=0.072  Score=61.01  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            579999995 679999999999999999999987653

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.68  E-value=0.37  Score=54.91  Aligned_cols=59  Identities=12%  Similarity=0.245  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V-~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+...|.+++.+.|++++.++.++++..+++ .+   ++ ...+|+  .|+|+-||-|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            46788888888888999999999999987644 33   22 223454  68999999999998754

>PLN02487 zeta-carotene desaturase

Probab=94.53  E-value=0.039  Score=62.59  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---E-EEEEc---CCcEEEccEEEEecCCC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLA---EGKILSSHLIIDAMGNF  260 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~g---v-~V~~~---~G~~i~ArlVIdADG~~  260 (584)
                      |-+.+.+.+++.|++|+.+++|.++..+.  ++   + -|++.   +++++.||.||-|.+..
T Consensus       297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            55667778888999999999999998873  32   2 24552   34579999999999977

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=94.49  E-value=0.14  Score=57.43  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCChH-HHhHhc
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      ..+|+.++...+.+.+.++|++++..++|+++..+++.+. |++.   +|  .+|+|+.||.|.|.+|. +.+.++
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g  198 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAG  198 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcC
Confidence            3589999999999999999999999999999988777643 4442   24  37999999999999998 444444

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.46  E-value=0.045  Score=64.97  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=29.5

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ...|+||| ||+|+++|..|+++|++|+|+|+.+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            46999999 5689999999999999999999853

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.42  E-value=0.18  Score=55.03  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             CCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945          387 FNRILQFGDASGIQSPVSFGGFGSLT  412 (584)
Q Consensus       387 ~~rvlLvGDAA~~v~PltGgG~g~~l  412 (584)
                      .+|+..+|-.-+-.||+. +|-|+++
T Consensus       382 ~~Nl~a~G~vL~G~d~~~-~gcG~GV  406 (419)
T TIGR03378       382 IENLYAIGAVLGGYDPIF-EGCGSGV  406 (419)
T ss_pred             cccceEechhhcCCChHh-cCCCchh
Confidence            688999999988889975 5555443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.39  E-value=0.14  Score=53.44  Aligned_cols=110  Identities=17%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc--ccccC----CHHHH---HHHHHcCCCccccc---chhhhc
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QEWNI----SRKEL---LELVESGILVEDDI---DEATAT  177 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~--r~w~I----s~~~l---~~L~~lGl~~~~el---e~~i~~  177 (584)
                      --|.||||| +|+-+|+.+|++|++|.|.|-++....+  ..-++    +-.++   ..-...|++.+ |+   .++|..
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~   82 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIE   82 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhh
Confidence            358899988 5888899999999999999977654321  11110    00000   01111222211 11   111111


Q ss_pred             ccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEE
Q 007945          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSI  231 (584)
Q Consensus       178 ~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v  231 (584)
                      .        .  ..-.+|..-.++|||+.|-+..-++++++...-....+|+.+
T Consensus        83 ~--------A--d~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~i  126 (439)
T COG1206          83 A--------A--DKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEI  126 (439)
T ss_pred             h--------h--hhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccC
Confidence            1        0  011223333467999999999999998775533333345444

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.31  E-value=0.37  Score=51.13  Aligned_cols=52  Identities=17%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       210 ~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .+...+...|.+|+.+++|++|..+++++.|.+.+|+++.||.||-|.....
T Consensus       214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  214 ALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             HHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence            3344444457799999999999999999999999999999999997765443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=94.19  E-value=0.53  Score=48.03  Aligned_cols=90  Identities=19%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+|+||| .|+-+|..|++.|.+|.++++.+...      .                                    .
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~  179 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E  179 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence            379999965 69999999999999999998753100      0                                    0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEccEEEEecCCCh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFS  261 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~---~--G~~i~ArlVIdADG~~S  261 (584)
                                         ..+.+.+.+. |++++.++.++++..++....+++.   +  ++++.++.||-|.|...
T Consensus       180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~  238 (300)
T TIGR01292       180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP  238 (300)
T ss_pred             -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence                               0122334445 8889999999988754422223332   2  35799999999999664

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=94.13  E-value=0.059  Score=60.77  Aligned_cols=55  Identities=22%  Similarity=0.221  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEe-CC--e-EE-EEEc-CCc-----EEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--A-AV-LLLA-EGK-----ILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~--g-v~-V~~~-~G~-----~i~ArlVIdADG~~  260 (584)
                      .+..-|.+.+++.|++++.+++|+++..+ ++  + |+ |.+. +|+     ...+|+||-|.|..
T Consensus       227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence            46677888999999999999999999885 22  2 22 3332 222     36799999999865

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=93.89  E-value=0.078  Score=59.15  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            369999995 57999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=93.86  E-value=0.062  Score=58.97  Aligned_cols=58  Identities=16%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhHhc
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~  268 (584)
                      |.+.|.+++.   +.++.+++|+.+..+..+..+...+|.++.++-||- ++....+.+.++
T Consensus       217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~-t~p~~~l~~ll~  274 (444)
T COG1232         217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIS-TAPLPELARLLG  274 (444)
T ss_pred             HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEE-cCCHHHHHHHcC
Confidence            3344444443   459999999999998777787777888999999984 444444554443

>PLN02976 amine oxidase

Probab=93.84  E-value=0.072  Score=65.32  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      .+..+||+||||| +|+++|+.|+++|++|+|+|+...+
T Consensus       690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            4446899999965 6999999999999999999987654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=93.83  E-value=0.65  Score=48.45  Aligned_cols=56  Identities=18%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhCC--CEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEccEEEEecCCChH
Q 007945          207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       207 L~~~L~~~a~~~G--~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~ArlVIdADG~~S~  262 (584)
                      |...|.+.+.+..  +.|..+++|+++..+++.|. |...  +|+  .+.++-||-|+|..+-
T Consensus       145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            3444455554443  48899999999987777554 4433  343  5888889999998873

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.64  E-value=0.63  Score=49.47  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       209 ~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ..+.+.+++.|++++.++++.++.  ++  .|.+.+|+++.++.||-|.|...
T Consensus       195 ~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       195 RLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCCh
Confidence            445566777899999999998874  33  45666888999999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.62  E-value=0.59  Score=51.59  Aligned_cols=32  Identities=31%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      -.|+||||| .|+-+|..|++.|. +|.++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            379999976 69999999999998 899998763

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.59  E-value=0.1  Score=57.72  Aligned_cols=54  Identities=35%  Similarity=0.369  Sum_probs=43.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCccc---------ccCCHHHHHHHHHcC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE---------WNISRKELLELVESG  164 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~---------w~Is~~~l~~L~~lG  164 (584)
                      -.|.||| ||+|+++|..|+++|+.|++.|+.+.++.--.         -.|....++.|...|
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G  187 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG  187 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence            5899999 57899999999999999999999998653111         135566788888887

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.56  E-value=0.43  Score=50.79  Aligned_cols=130  Identities=18%  Similarity=0.085  Sum_probs=68.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCccc-----ccCCHHHHHHHHHcCCCcccccchhhhcccCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQE-----WNISRKELLELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~-----w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      ...|+||||| .+.-++..|.+++  .+|.+|=|++.-.....     .-.+++-++.+..+.-    +....+..+.  
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~----~~R~~~l~~~--  263 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD----EERRELLREQ--  263 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H----HHHHHHHHHT--
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH----HHHHHHHHHh--
Confidence            5789999977 6888888888766  48999988874321100     0133333333322110    0000000000  


Q ss_pred             ceeeecCCCcccccccccc-eeCHHHHHHH---HH-HHHHhC-CCEEEeCceEEEEEEeCC-eEEEEEcC-----CcEEE
Q 007945          182 NRCGFEGKGEIWVEDILNL-GVSPAKLIEI---VK-KRFISL-GGVIFEGYSVSSICTYEN-AAVLLLAE-----GKILS  249 (584)
Q Consensus       182 ~~v~f~~~~~l~~~~~l~~-~vd~~~L~~~---L~-~~a~~~-G~~i~~~t~v~~v~~~~~-gv~V~~~~-----G~~i~  249 (584)
                                    ..+++ +|+++.+.+.   +. +++... -..++..++++++...++ ++.+++.+     ..++.
T Consensus       264 --------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~  329 (341)
T PF13434_consen  264 --------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLE  329 (341)
T ss_dssp             --------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEE
T ss_pred             --------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEe
Confidence                          00122 3666544332   22 233222 358999999999999885 88888865     24799


Q ss_pred             ccEEEEecCC
Q 007945          250 SHLIIDAMGN  259 (584)
Q Consensus       250 ArlVIdADG~  259 (584)
                      +|.||-|+|.
T Consensus       330 ~D~VilATGy  339 (341)
T PF13434_consen  330 VDAVILATGY  339 (341)
T ss_dssp             ESEEEE---E
T ss_pred             cCEEEEcCCc
Confidence            9999999995

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.53  E-value=0.67  Score=51.13  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=28.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            79999976 79999999999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=93.27  E-value=0.62  Score=51.04  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=25.0

Q ss_pred             CccEEEEcchHHHHHH-HHHH----hCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGGTLGIFIA-TALS----FKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg~Gl~~A-a~LA----r~GlrVlLIEr~~~  143 (584)
                      ..|.|+.+|-+|+-.| ..++    +.|.+|.+++..+.
T Consensus       216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp  254 (422)
T PRK05329        216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP  254 (422)
T ss_pred             CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC
Confidence            4688877777777776 3333    56999999998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.13  E-value=0.13  Score=57.14  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CccEEEEcc-hHHHHHHHHH-HhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATAL-SFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~L-Ar~GlrVlLIEr~~~~~  145 (584)
                      ..-|+|||| |+|+.+|..| ++.|++|.|+||.+.++
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            457999995 6799998865 47799999999998765

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=92.89  E-value=0.75  Score=51.09  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=24.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .|+||||| +|+-+|..+.+.|. +|.+++...
T Consensus       283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            69999976 69999988888886 688766543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.88  E-value=0.85  Score=51.28  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      +|+||||| .|+-+|..|+..|.+|.|+++.+....                                          . 
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~-  389 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D-  389 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence            79999976 699999999999999999987642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S  261 (584)
                                        ..+.+++.+ .|++++.++.++++..+++.++ |++.   +|  +++.++.|+-|.|...
T Consensus       390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p  449 (517)
T PRK15317        390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP  449 (517)
T ss_pred             ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence                              011223333 4789999999999876544443 4443   23  3588999998888764

>PLN03000 amine oxidase

Probab=92.29  E-value=0.17  Score=59.84  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..||+||||| +|+++|..|++.|++|+|+|++..++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            5899999975 69999999999999999999987654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=92.26  E-value=0.99  Score=47.96  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=26.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      .|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            69999965 799999999999997 99998764

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=0.16  Score=54.17  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             CCccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       109 ~~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      ..||||||| |=+=..+|++.+|.|.+|+-+|+++.-|.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence            369999999 54688888899999999999999998764

>PRK12831 putative oxidoreductase; Provisional

Probab=92.15  E-value=1.4  Score=49.01  Aligned_cols=32  Identities=31%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+||||| .|+-+|..|++.|.+|.+++|..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            379999976 69999999999999999998764

>TIGR02730 carot_isom carotene isomerase

Probab=92.11  E-value=0.51  Score=52.62  Aligned_cols=35  Identities=40%  Similarity=0.660  Sum_probs=31.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ||||||||| .|+++|+.||++|++|+|+||+..+|
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            799999977 59999999999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=0.23  Score=52.48  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=32.5

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .|||+|+| |-.=+.++++|+..|.+|++|||++.-|
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            69999999 5569999999999999999999998755

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=91.69  E-value=0.17  Score=54.56  Aligned_cols=34  Identities=32%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEE--EcCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAI--VERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlL--IEr~~~  143 (584)
                      ..+|+||||| .|+++|+.|++++.+|.|  +|..+-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R   47 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR   47 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence            4699999987 599999999999888754  898764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=91.64  E-value=24  Score=38.64  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~----GlrVlLIEr~~~~~  145 (584)
                      ..||+||||| +|+++|..|+++    |++|+|+|+++..|
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            4699999976 699999999998    99999999987653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.46  E-value=0.27  Score=45.33  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|+|+ .+|+..|+.|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            689995 579999999999999999998764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=91.33  E-value=1.5  Score=53.31  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      .|+|+|| ..|+-+|..|++.|. .|+|+|+.+..        .                                    
T Consensus       319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------  354 (985)
T TIGR01372       319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------  354 (985)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence            6899996 579999999999995 57888765310        0                                    


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEccEEEEecCCChH--H
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSP--V  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~----~G~~i~ArlVIdADG~~S~--v  263 (584)
                                         ..+.+++++.|+.++.++.++.+..++....|++.    +++++.|+.|+-+.|....  +
T Consensus       355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L  415 (985)
T TIGR01372       355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL  415 (985)
T ss_pred             -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence                               01223456678899999988887644332223332    3568999999999998764  5


Q ss_pred             HhHhcC
Q 007945          264 VKQIRS  269 (584)
Q Consensus       264 ~rql~~  269 (584)
                      .++++.
T Consensus       416 ~~~lg~  421 (985)
T TIGR01372       416 FSQRGG  421 (985)
T ss_pred             HHhcCC
Confidence            566653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=90.85  E-value=0.51  Score=54.16  Aligned_cols=102  Identities=20%  Similarity=0.326  Sum_probs=71.1

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~  191 (584)
                      .+||||| +|+=+|..|...|++|.|++=.+.                |          ++..                 
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------l----------MerQ-----------------  184 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------L----------MERQ-----------------  184 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------H----------HHHh-----------------
Confidence            4788877 699999999999999999963321                1          0000                 


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHhc
Q 007945          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR  268 (584)
Q Consensus       192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql~  268 (584)
                                +|+. =-+.|...+.+.|..++.+...+.+..++.-..|.++||..+.|++||=|+|..-.  ++++.+
T Consensus       185 ----------LD~~-ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aG  252 (793)
T COG1251         185 ----------LDRT-AGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAG  252 (793)
T ss_pred             ----------hhhH-HHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcC
Confidence                      0000 02345556667788888887777776544445688999999999999999998754  666654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=90.80  E-value=0.29  Score=45.95  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=26.9

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|+||| .|.++|..|+++|++|.|..|.+
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            7899976 59999999999999999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=90.77  E-value=0.13  Score=54.98  Aligned_cols=36  Identities=39%  Similarity=0.618  Sum_probs=32.4

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .|||||.| |..=+.+++.|+..|-+|+.|||++.-|
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG   40 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG   40 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence            59999999 6779999999999999999999998643

>TIGR02734 crtI_fam phytoene desaturase

Probab=90.05  E-value=1.2  Score=49.65  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ||||||| .|+++|+.||++|++|+|+|++..+|
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            6899977 59999999999999999999998765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=89.81  E-value=0.39  Score=46.24  Aligned_cols=30  Identities=30%  Similarity=0.435  Sum_probs=25.6

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|+|+| .|...|+.+|+.|++|.++|+++
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            7899965 79999999999999999999875

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=89.36  E-value=2.7  Score=49.61  Aligned_cols=32  Identities=31%  Similarity=0.294  Sum_probs=27.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      -.|+||||| .|+-+|..+.+.|.+ |.++++..
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            379999976 699999999999997 99999764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.93  E-value=0.55  Score=46.11  Aligned_cols=33  Identities=30%  Similarity=0.605  Sum_probs=29.4

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ...|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            35899999 7899999999999999 699999874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.90  E-value=0.49  Score=52.17  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=28.7

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      |+|+| |+.|.++|..|+++|++|.+.|+...+
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            78999 789999988999999999999988653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=88.81  E-value=2.3  Score=45.55  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=68.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -.+|+||| +|+-++..-.+.|-+|++||-.+..+..                                           
T Consensus       213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-------------------------------------------  249 (506)
T KOG1335|consen  213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-------------------------------------------  249 (506)
T ss_pred             eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------------------------------------------
Confidence            57888866 7999999999999999999855422210                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~---G--~~i~ArlVIdADG~~S~v~  264 (584)
                                 +|++ +-.....-+.++|..+..+|+|..+....| .+.|++.+   +  +++.|+++.-|.|+. |+-
T Consensus       250 -----------mD~E-isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t  316 (506)
T KOG1335|consen  250 -----------MDGE-ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFT  316 (506)
T ss_pred             -----------cCHH-HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccc
Confidence                       1111 111122223447899999999999999888 56666653   3  379999999999987 344


Q ss_pred             hHh
Q 007945          265 KQI  267 (584)
Q Consensus       265 rql  267 (584)
                      +.|
T Consensus       317 ~GL  319 (506)
T KOG1335|consen  317 EGL  319 (506)
T ss_pred             cCC
Confidence            444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.80  E-value=0.39  Score=46.53  Aligned_cols=31  Identities=32%  Similarity=0.392  Sum_probs=24.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|+|-| +|+.+|+.||++|++|+.+|.++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            37899955 89999999999999999999775

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=88.40  E-value=0.58  Score=48.49  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             cEEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-T-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.|| | +|+-++..|.++|++|+++|...
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~   34 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS   34 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence            3789997 7 89999999999999999999765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.24  E-value=0.57  Score=48.96  Aligned_cols=32  Identities=31%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            4699999 5689999999999999999999863

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.68  E-value=4.5  Score=46.96  Aligned_cols=32  Identities=34%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      -.|+||||| .|.-+|..+.+.|. +|.++++..
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            379999976 69999999899997 599998764

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=87.32  E-value=0.51  Score=48.44  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ++|+| ||+|-++     |+.||++|.||+|||-.+..
T Consensus         4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~   41 (279)
T PRK13230          4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA   41 (279)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence            56668 8887666     77899999999999977653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.77  E-value=0.79  Score=48.75  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .-|+||| ||+|+.+|..|++.|+ ++.++|...
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            5899999 7899999999999999 999999864

>PLN02976 amine oxidase

Probab=86.69  E-value=53  Score=41.64  Aligned_cols=37  Identities=8%  Similarity=0.052  Sum_probs=31.8

Q ss_pred             EEEeCceEEEEEEe----------CCeEEEEEcCCcEEEccEEEEec
Q 007945          221 VIFEGYSVSSICTY----------ENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       221 ~i~~~t~v~~v~~~----------~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      .|+.++.|+.|...          +++|.|++.+|++++|+.||-+-
T Consensus       947 ~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTV  993 (1713)
T PLN02976        947 DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITV  993 (1713)
T ss_pred             CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeC
Confidence            59999999999874          46788999899999999999774

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.66  E-value=0.82  Score=48.62  Aligned_cols=33  Identities=33%  Similarity=0.577  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~  143 (584)
                      .-|+||| ||+|+.+|-.|++.|+ ++.|+|+...
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            5799999 7899999999999999 8999998753

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=86.55  E-value=0.9  Score=44.55  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ..-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            36899999 7899999999999998 899999875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.43  E-value=1  Score=41.22  Aligned_cols=30  Identities=33%  Similarity=0.630  Sum_probs=27.5

Q ss_pred             EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       113 VVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      |+|+| |++|+.+|..|++.|+ ++.++|...
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            79999 7899999999999999 699999775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.18  E-value=0.97  Score=47.31  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+| |.+|++.|+.|+++|++|.++.|..
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4699999 4579999999999999999999864

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=86.10  E-value=1.3  Score=44.57  Aligned_cols=33  Identities=27%  Similarity=0.590  Sum_probs=29.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~  143 (584)
                      .-|+|+| ||+|+-++-+|||.|+ +..|||....
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v   65 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV   65 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence            4799999 9999999999999999 7899998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.09  E-value=0.86  Score=50.60  Aligned_cols=31  Identities=39%  Similarity=0.536  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+| |++|+.+|..|+++|++|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            699999 5689999999999999999999765

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=85.77  E-value=1  Score=43.07  Aligned_cols=30  Identities=33%  Similarity=0.492  Sum_probs=27.3

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       113 VVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      |+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            79999 78999999999999995 99999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=85.69  E-value=1.2  Score=40.76  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=28.9

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      .--|+|+| ||+|.+++..|+..|.+ |.++.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            35899999 78999999999999998 99998763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=85.53  E-value=1.3  Score=48.88  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      -+|+||||| .|+-+|..|++.|.+|.++|+.+..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            479999975 7999999999999999999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.51  E-value=0.91  Score=45.37  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=29.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .++|+|+ -.|.++|-.|++.|+.|++||+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            5899995 5899999999999999999999874

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=85.40  E-value=56  Score=36.33  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=30.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|+||||| +|+++|..|+++|++|+|+|+++..|
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            58999976 69999999999999999999988654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.22  E-value=0.95  Score=47.31  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999965 69999999999999999999885

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=85.21  E-value=1  Score=40.85  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~  143 (584)
                      .-|+|+| |++|+.+|-.|++.|+ ++.++|....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            4689999 6799999999999999 6999998754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=84.93  E-value=0.79  Score=46.88  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=25.4

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      |.|+| ||+|-++     |+.||++|.||+|||-.+..
T Consensus         4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~   41 (273)
T PRK13232          4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA   41 (273)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence            34558 8887766     78899999999999977653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=84.76  E-value=1.1  Score=46.26  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=27.3

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|.|+|+ ..|+++|..|++.|++|.+++|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            3889995 579999999999999999999853

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=84.52  E-value=3.5  Score=45.26  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=36.5

Q ss_pred             HhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       216 ~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      ++.|.+++.++.|++++....  +|.+.+|+++.-+.+|-|+|.
T Consensus       138 ke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             hhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence            456899999999999987664  566778999999999999999

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.45  E-value=2.4  Score=47.30  Aligned_cols=36  Identities=39%  Similarity=0.672  Sum_probs=32.9

Q ss_pred             CccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .|||||||||. |+++|+.||++|++|+|+||+..+|
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            69999999874 9999999999999999999998765

>PLN02676 polyamine oxidase

Probab=84.11  E-value=2.5  Score=47.20  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~~~  144 (584)
                      .+||+||||| .|+++|..|+++|+ +|+|+|++...
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            6899999976 69999999999998 59999998754

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=84.01  E-value=1.2  Score=46.13  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=26.3

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVER  140 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr  140 (584)
                      .|.|+|+ ..|+++|..|+++|++|.+++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            4889995 5799999999999999999997

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=83.73  E-value=9.5  Score=44.24  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      -.|+||||| .|+-+|..+.+.|. +|.++.+..
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            379999976 68888888888997 699998764

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=83.59  E-value=2.7  Score=45.04  Aligned_cols=55  Identities=22%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~ArlVIdADG~~  260 (584)
                      .+.+.|.+.+.+.|++|+.+++|++|..+++++++.+. +|+++.||.||-|.-..
T Consensus       198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence            34455777887889999999999999998888765543 67789999999875543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.51  E-value=1.2  Score=46.03  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|.|||+| .|..+|..+++.|++|.++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58899955 799999999999999999998864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.41  E-value=1.3  Score=46.70  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=28.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|||+| .|...|+.++.+|++|.+.|+.+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999965 79999999999999999999876

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=83.27  E-value=1.5  Score=45.05  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=29.0

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-lrVlLIEr~~  142 (584)
                      ..-|+|+| ||+|+.+|-.||+.| -++.|+|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            35899999 789999999999999 4899999764

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=83.17  E-value=1.2  Score=47.25  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          120 LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       120 ~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|+++|..|+++|++|+|+|++..+|
T Consensus         2 aGL~aA~~L~~~G~~v~vlEa~~r~G   27 (450)
T PF01593_consen    2 AGLAAAYYLAKAGYDVTVLEASDRVG   27 (450)
T ss_dssp             HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred             hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence            69999999999999999999998754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=83.14  E-value=11  Score=41.80  Aligned_cols=32  Identities=22%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      -.|+|+||| .|+-+|..+.+.|. +|.+|+|..
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            479999975 68888888888896 699998864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=82.84  E-value=1.2  Score=45.54  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      |.|+| ||+|-++     |+.||++|.||+|||-.+..
T Consensus         4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~   41 (274)
T PRK13235          4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA   41 (274)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            45568 7877665     77899999999999977653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.76  E-value=1.7  Score=37.92  Aligned_cols=30  Identities=33%  Similarity=0.648  Sum_probs=27.0

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ||||| |..|..+|-.|.+.+.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            78999 5689999999999888999999885

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=82.76  E-value=1.6  Score=42.79  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=27.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      --|+||||| +|...|..|.+.|.+|+||++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            479999976 7999999999999999999854

>PRK04148 hypothetical protein; Provisional

Probab=82.74  E-value=1.1  Score=41.01  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             ccEEEEcchHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|++||-|.|..+|..|++.|++|+.+|.++
T Consensus        18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence            35999995599989999999999999999775

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=82.73  E-value=1.7  Score=43.96  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=28.6

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ...|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            36899999 7899999999999998 678888765

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=82.68  E-value=1.7  Score=40.86  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVER  140 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr  140 (584)
                      --|+||||| +|..-|..|.+.|.+|+||++
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            479999976 799999999999999999953

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.65  E-value=1.5  Score=45.34  Aligned_cols=31  Identities=35%  Similarity=0.527  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|+|+| .|..+|..++++|++|.++|+++
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999965 69999999999999999999875

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=82.63  E-value=1.1  Score=45.58  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |.|.| ||+|-++     |+.||++|.||+|||=.+.
T Consensus         3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q   39 (268)
T TIGR01281         3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK   39 (268)
T ss_pred             EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            45667 7776655     6678899999999997764

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=82.50  E-value=1.5  Score=47.16  Aligned_cols=63  Identities=22%  Similarity=0.243  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC--ChHHHh
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVK  265 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~--~S~v~r  265 (584)
                      -++.|-++-.++.++.|+.++.+..|.++......+.+.++||.+++.++||.|.|-  +|-++.
T Consensus       391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~  455 (659)
T KOG1346|consen  391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE  455 (659)
T ss_pred             hHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence            345566677778888899999999999998888889999999999999999999995  455664

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=82.45  E-value=1.2  Score=45.32  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |.|.| ||+|-++     |..||++|.||+|||-.+.
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq   39 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK   39 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            56778 7776554     7788999999999998764

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=82.44  E-value=1.1  Score=45.40  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.5

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~  143 (584)
                      ++|+| ||+|-++     |+.||++|.||+|||=.+.
T Consensus         4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq   40 (270)
T cd02040           4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK   40 (270)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            55668 7776665     6778899999999997764

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.29  E-value=1.8  Score=42.93  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      ..-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35899999 78999999999999996 99999774

>TIGR01287 nifH nitrogenase iron protein

Probab=82.26  E-value=1.5  Score=44.92  Aligned_cols=32  Identities=31%  Similarity=0.420  Sum_probs=25.4

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      +.|.| ||+|-++     |..||++|.||+|||=.+..
T Consensus         3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~   40 (275)
T TIGR01287         3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA   40 (275)
T ss_pred             eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            56789 8776555     77888999999999977654

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.26  E-value=1.5  Score=45.38  Aligned_cols=31  Identities=23%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|.|||+| .|..+|..|+++|++|.++|+++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            48899965 69999999999999999999875

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=81.79  E-value=1.6  Score=42.92  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      |.|.| ||.|-++     |+.||++|.||+|||-.+..
T Consensus         3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~   40 (212)
T cd02117           3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA   40 (212)
T ss_pred             EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            56778 7776665     66788999999999966543

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=81.60  E-value=1.9  Score=44.67  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      -.|+|+| ||+|.++|..|++.|+ +|.|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4799999 6899999999999998 799999874

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=81.52  E-value=1.7  Score=52.07  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      .-|.||| ||+|+++|..|-+.|+-|+|.||...++-
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            6899999 78899999999999999999999987653

>PRK08328 hypothetical protein; Provisional

Probab=81.41  E-value=2  Score=43.05  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=28.6

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ..-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35799999 7899999999999998 578888764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=81.40  E-value=1.7  Score=44.98  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|+|+| .|..+|..++++|++|.++|+++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999965 79999999999999999999875

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.29  E-value=1.7  Score=44.93  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|.|||+| .|..+|..|+++|++|.++|+.+
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999965 79999999999999999999875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.26  E-value=1.8  Score=47.46  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+|+|+ ++|..+|..|+++|++|.++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            46899995 689999999999999999999874

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=81.22  E-value=2.1  Score=43.35  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCC-----------CeEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-----------lrVlLIEr~~  142 (584)
                      ...|+||| ||+|+.++-.||+.|           .++.|+|...
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            47899999 789999999999864           3899999765

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=80.89  E-value=2.2  Score=42.03  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+||||| +|..-|..|.+.|.+|+|+++..
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            69999975 79998999999999999998653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=80.78  E-value=6.1  Score=43.01  Aligned_cols=46  Identities=11%  Similarity=0.012  Sum_probs=36.0

Q ss_pred             HhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEE--ccEEEEecCCCh
Q 007945          216 ISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILS--SHLIIDAMGNFS  261 (584)
Q Consensus       216 ~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~--ArlVIdADG~~S  261 (584)
                      .+.|++++.+++|++++.++..+.+...+ ++++.  ++.||-|+|...
T Consensus        55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence            55689998999999998766666665432 45788  999999999854

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK08223 hypothetical protein; Validated

Probab=80.72  E-value=2.1  Score=44.35  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .-|+||| ||+|+.+|..||+.|+ ++.++|...
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5899999 7899999999999999 678888664

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=80.70  E-value=1.8  Score=45.02  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .||.||  |+|-+-|-.||++|++|+||-|..
T Consensus        52 AVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~   83 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAKRGFNVVLISRTQ   83 (312)
T ss_pred             EEEECCCCcchHHHHHHHHHcCCEEEEEeCCH
Confidence            556674  799999999999999999998874

>PLN02487 zeta-carotene desaturase

Probab=80.58  E-value=1.1e+02  Score=34.94  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|+||||| .|+++|..|+++|++|+|+|+.+..+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            4699999975 69999999999999999999988654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=80.57  E-value=2.1  Score=44.43  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=27.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      --|+|+| ||+|.++|..|++.|++ |.++.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3589999 68999999999999997 99999864

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=80.56  E-value=2  Score=45.88  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr--~GlrVlLIEr~~~~~  145 (584)
                      .-|.||| ||+|..+|..|-+  -++.|.++|+.+.|.
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            4799999 6789999997765  489999999999764

>PRK13236 nitrogenase reductase; Reviewed

Probab=80.43  E-value=1.4  Score=45.85  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +.+.| ||+|-++     |+.||++|.||+|||-.+...
T Consensus         9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~   47 (296)
T PRK13236          9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKAD   47 (296)
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            44556 6776655     888999999999999776543

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.37  E-value=1.5  Score=45.61  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~-----~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ++|.| ||+|-+     +|+.||+.|.||+|||-.+..
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~   40 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH   40 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            67888 876554     477899999999999977653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.35  E-value=2.3  Score=42.39  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .-|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5899999 7899999999999999 778888764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=80.34  E-value=5.6  Score=44.22  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=31.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      -|||||||| .|+++|+.||++|++|+|+||+..+|
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            499999976 58999999999999999999998654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=80.10  E-value=2  Score=45.34  Aligned_cols=30  Identities=23%  Similarity=0.536  Sum_probs=27.2

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      .|.|+|. ..|+..|..|+++|++|.+++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            5899995 57999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	584
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-06
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 87/654 (13%), Positives = 199/654 (30%), Gaps = 207/654 (31%)

Query: 3   FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           F+       V   P  +  K ++    I +   A   S T R+  ++    E        
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAV--SGTLRLFWTLLSKQE-------- 76

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
                             + VQ+ +++V+  N                            
Sbjct: 77  ------------------EMVQKFVEEVLRINYK-------------------------- 92

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKE--------LLEL-VESG 164
           F+ + +  +  + +++ R  ++ R++ +N         +SR +        LLEL     
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 165 ILVEDDI-------------DEATATKFNPNRCGFEGKGEI-WVEDILNLG--VSPAKLI 208
           +L++  +                   K +          +I W    LNL    SP  ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMD---------FKIFW----LNLKNCNSPETVL 199

Query: 209 EIVKKRFISLGGVIFEGYSVSS-----ICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263
           E+++K    +          SS     I + +     LL      +  L++    N    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---N---- 252

Query: 264 VKQIRSGRKPDGVC--LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGS 321
           V+  ++    +  C  L+     R       +D + ++++     D              
Sbjct: 253 VQNAKAWNAFNLSCKILLT---TR---FKQVTDFLSAATTTHISLDHHSMTLTP------ 300

Query: 322 GPLDRTTYMF-TYID-------PQA--GSP--------KLEELLER--YW-----DLMPE 356
              D    +   Y+D        +    +P         + + L     W     D +  
Sbjct: 301 ---DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 357 YQGVTLDNLE--IQRVIY---GIFPTYRDSPLPAAFNRILQFGDASGIQSPV--SFGGFG 409
               +L+ LE    R ++    +FP    + +P     ++ F         V      + 
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 410 SLTRHLGRLST---GVYEAVRGDFVDSYSL--SLLNPYMP-------NLSASWLFQ---- 453
            + +     +     +Y  ++    + Y+L  S+++ Y         +L   +L Q    
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 454 ---RAMSAKQQSDVSPDFINELLYVNFQCMQ-KL---GDPVLRPFLQDVIKFGPLAKTLG 506
                +   +  +    F   +++++F+ ++ K+                  G +  TL 
Sbjct: 476 HIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNAS--------GSILNTLQ 525

Query: 507 LVMLNKPQIIPS--IFKQVGIPVLVDWSGHFFM-LGYYTLLSTFADPVIRSLLN 557
            +   KP I  +   +++     LV+    F   +    + S + D +  +L+ 
Sbjct: 526 QLKFYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 84/582 (14%), Positives = 166/582 (28%), Gaps = 177/582 (30%)

Query: 7   RHFNGVSHF-PSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG------ 59
           R +N    F    V   +   +    L           R  +++ + G V G+G      
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLEL--------RPAKNVLIDG-VLGSGKTWVAL 168

Query: 60  -GAYSYDALKRLD-QI-WSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVC 116
               SY    ++D +I W N+ +  + +  ++ +      L  Q D +            
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LLYQIDPN------------ 212

Query: 117 GGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEAT 175
                 + + +     +++ I        R  +       LL      +L   ++ +   
Sbjct: 213 ------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VL--LNVQNAKA 258

Query: 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE 235
              FN   C    K       IL            +  RF  +   +    + + I    
Sbjct: 259 WNAFN-LSC----K-------IL------------LTTRFKQVTDFL-SAATTTHISLDH 293

Query: 236 NAAVLLLAEGK-ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDN-STS 293
           ++  L   E K +L  +L      +    V        P      +   A   +D  +T 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTT----NP----RRLSIIAESIRDGLATW 344

Query: 294 D------------VIYSSSSVKKVGDSEVQ-LFWE--AFPAGSGPLDRTTYMFTYIDPQA 338
           D            +I   SS+  +  +E + +F     FP              +I    
Sbjct: 345 DNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPS-----------AHI---- 387

Query: 339 GSPKLEELLERYWDLMPEY-QGVTLDNLEIQRVI--------YGIFPTYRDSPLPA---- 385
             P    LL   W  + +    V ++ L    ++          I   Y +  +      
Sbjct: 388 --P--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 386 --------AFNRILQFGDASGIQSPVSFGGFGS-LTRHLGRLSTGVYEAVRGDFVDSYSL 436
                    +N    F D+  +  P     F S +  HL             + +  + +
Sbjct: 444 ALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHL-------KNIEHPERMTLFRM 495

Query: 437 SLLNPYMPNLSASWLFQR---AMSAKQQSDVSPDFINEL-LYVNFQCMQKLGDPVLRPFL 492
             L+         +L Q+     +A   S    + + +L  Y  + C     DP     +
Sbjct: 496 VFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---DPKYERLV 545

Query: 493 QDVIKF----------GPLAKTLGLVMLNKPQ-IIPSIFKQV 523
             ++ F                L + ++ + + I     KQV
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 73/502 (14%), Positives = 139/502 (27%), Gaps = 170/502 (33%)

Query: 152 ISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE----IWVEDILNLG----VS 203
           +S++E+       I++  D    T   F         K E     +VE++L +     +S
Sbjct: 46  LSKEEIDH-----IIMSKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 204 PAKLI----EIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSH-- 251
           P K       ++ + +I           +F  Y+VS +  Y      LL     L     
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----LRPAKN 152

Query: 252 LIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQ 311
           ++ID +       K            + +  C               S  V+   D ++ 
Sbjct: 153 VLIDGVLGSG---KT----------WVALDVC--------------LSYKVQCKMDFKI- 184

Query: 312 LFWEAFPAGSGP---LDRTTYMFTYIDP-------QAGSPKL--EELLERYWDLM--PEY 357
            FW      + P   L+    +   IDP        + + KL    +      L+    Y
Sbjct: 185 -FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 358 QG--VTLDNLEIQRVIYGIFPTYRDSPLPAAFN---RILQFGDASGIQSPVSFGGFGSLT 412
           +   + L N++  +                AFN   +IL           +        T
Sbjct: 244 ENCLLVLLNVQNAKAW-------------NAFNLSCKIL-----------L-------TT 272

Query: 413 RHLG---RLSTGVYEAVRGD-----FVDSYSLSLLNPYMPNLSASWLFQRAMS-AKQQSD 463
           R       LS      +  D            SLL          +L  R     ++   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------LKYLDCRPQDLPREVLT 324

Query: 464 VSP-----------DFIN---ELLYVNF--------QCMQKLGDPVLRP-------FLQD 494
            +P           D +       +VN           +  L     R        F   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 495 V-IKFGPLAKTLGLVMLN-KPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVI 552
             I   P    L L+  +     +  +  ++    LV+       +   ++       + 
Sbjct: 385 AHI---P-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 553 ------RSLLNAFPPRMKYEWN 568
                 RS+++ +     ++ +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSD 462

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 64/440 (14%), Positives = 138/440 (31%), Gaps = 63/440 (14%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISRKELLELVE 162
           +DV++ G G  G   A  LS +GL++ +V+                   +S+    +L  
Sbjct: 7   YDVLIIGGGFAGSSAAYQLSRRGLKILLVDS----KPWNRIGDKPCGDAVSKAHFDKLGM 62

Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVI 222
                     E    K N  +        +W  +     ++     + V K     G  I
Sbjct: 63  -----PYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEI 117

Query: 223 FEGYSVSSICTYENAAVLLLA------EGKILSSHLIIDAMGNFSPVVKQI--RSGRKPD 274
           ++  +       +      +       E   + S ++++A G       ++        D
Sbjct: 118 WDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITED 177

Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDRTTYMF 331
                     R         V+ +   ++      + +  E  P G     P  +     
Sbjct: 178 LDDKDADVAYRE--------VLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNV 229

Query: 332 -TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI 390
              I    G P + E  ++Y D         +D  ++      + P  R      A+N I
Sbjct: 230 GLGIQGGMGYPSIHEYYKKYLDKYAPD----VDKSKLLVKGGALVP-TRRPLYTMAWNGI 284

Query: 391 LQFGDASGIQSPVSFGG--FGSLTRHLGRL-STGVYEAV-RGDF----VDSYSLSLLNPY 442
           +  GD+    +PV  GG     ++   G   +  +  A   GDF    +   ++  +N Y
Sbjct: 285 IVIGDSGFTVNPVHGGGKGSAMIS---GYCAAKAILSAFETGDFSASGLWDMNICYVNEY 341

Query: 443 MPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLA 502
               ++  +F+R +             N+ +    +      + +L    +  +      
Sbjct: 342 GAKQASLDIFRRFLQK---------LSNDDINYGMKKKIIKEEDLLEASEKGDLHLSVAD 392

Query: 503 KTLGLVM-LNKPQIIPSIFK 521
           K + ++  L +P ++  +  
Sbjct: 393 KAMRVISGLGRPSLLFKLKA 412

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 47/345 (13%), Positives = 93/345 (26%), Gaps = 63/345 (18%)

Query: 111 FDVIVCGG-----TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKE--------- 156
            DV+V G            A+ ++  G +V IVE+             R           
Sbjct: 6   VDVLVIGAGPAGTVA----ASLVNKSGFKVKIVEKQKF---------PRFVIGESLLPRC 52

Query: 157 LLELVESGILVEDDIDEATATKFNPNR-CGFEGKGEIWVEDILNLGVSPAKLI------E 209
           +  L E+G L  D +      +    +    +   +    D  + G +    +      +
Sbjct: 53  MEHLDEAGFL--DAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDK 110

Query: 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSPVVK 265
            +       G  +     V+ I  +   +V  +       + + +  IIDA G    + +
Sbjct: 111 TLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPR 170

Query: 266 QIRSGRKPDGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGP 323
                 KP G           +  K    ++     + +  V        W   P  +G 
Sbjct: 171 MFGL-DKPSGFESRRTLFTHIKDVKRPVAAE--MEGNRITAVVHKPKVWIW-VIPFSNG- 225

Query: 324 LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL 383
                ++         +   EE +                + E       I   Y  S  
Sbjct: 226 NTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFEPRTIEG-YAISAS 283

Query: 384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
               +  +  G+A+    P+               S+G   A+  
Sbjct: 284 KLYGDGFVLTGNATEFLDPIF--------------SSGATFAMES 314

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 60/349 (17%), Positives = 106/349 (30%), Gaps = 63/349 (18%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISR--KELLELVESG 164
            FD+IV G G  G  +A+ ++ +G RV ++ER     R Q  E  +      +  +    
Sbjct: 7   VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF-PRHQIGESLLPATVHGICAM---- 61

Query: 165 ILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSP---------AKLIEIVKKRF 215
           + + D++  A           +  + E W          P         A+  +++ +  
Sbjct: 62  LGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNS 121

Query: 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGK-----ILSSHLIIDAMGNFSPVVKQIRSG 270
              G  + E + V  +      AV +          +  +  I+DA GN + V + +   
Sbjct: 122 ERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGER 181

Query: 271 RKPDGVCLVVGSCARG-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDR 326
                          G F++                   +  +   AF  G     PL  
Sbjct: 182 VYSRF---FQNVALYGYFENGKRLP-----------APRQGNILSAAFQDGWFWYIPLSD 227

Query: 327 TTYMFTYIDPQAGSPK----LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP 382
           T      +  +  +       E  L RY D  P  +        +    YG     +D  
Sbjct: 228 TLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYS 287

Query: 383 L---PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
                   N +   GDA+    PV               S+GV+ A   
Sbjct: 288 YCNTSFWKNGMALVGDAACFVDPVF--------------SSGVHLATYS 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	584
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	99.97
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.96
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.96
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.96
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.95
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.95
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.95
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.94
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.94
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.94
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.94
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.94
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.93
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.92
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.92
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.92
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.91
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.91
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.89
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.88
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.88
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.88
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.86
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.81
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.72
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.63
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.6
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.48
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.43
3dme_A	369	Conserved exported protein; structural genomics, P	99.4
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.4
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.37
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.29
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.24
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.23
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.21
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.2
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.19
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.18
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.17
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.14
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.13
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.12
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.1
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.08
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.07
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.01
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.98
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.97
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.97
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.96
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.93
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.9
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.89
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.88
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.88
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.88
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.87
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.83
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.83
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.82
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.82
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.8
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.79
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.78
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.77
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.77
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.77
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.76
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.75
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.75
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.74
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.72
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.71
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.71
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.7
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.7
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.69
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.68
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.67
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.67
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.66
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.66
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.65
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.64
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.62
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.62
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.62
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.6
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.58
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.57
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.57
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.53
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.53
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.52
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.49
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.48
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.47
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.39
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.37
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.32
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.32
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.31
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.29
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.29
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.29
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.29
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.17
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.15
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.12
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.07
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.07
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.07
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.03
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.02
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.02
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.01
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.95
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.94
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.91
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.88
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.88
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.87
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.87
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.87
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.86
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.85
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.85
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.84
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.83
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.81
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.8
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.8
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.79
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.78
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.77
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.76
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.75
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.75
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.74
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.71
4dna_A	463	Probable glutathione reductase; structural genomic	97.71
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.7
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.68
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.68
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.68
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.65
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.65
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.65
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.63
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.62
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.62
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.61
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.61
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.58
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.56
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.54
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.54
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.53
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.52
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.49
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.47
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.46
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.46
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.45
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.44
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.44
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.42
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.4
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.4
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.39
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.39
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.39
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.37
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.37
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.34
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.34
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.33
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.33
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.33
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.32
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.29
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.29
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.29
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.27
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.24
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.22
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.22
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.21
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.2
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.2
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.13
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.08
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.05
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.03
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.03
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.01
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.01
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.98
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.96
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.95
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.93
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	96.91
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.91
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.9
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.86
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.83
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	96.83
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.82
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.81
4dna_A	463	Probable glutathione reductase; structural genomic	96.79
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.79
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.75
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.75
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.74
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.72
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.72
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.71
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.69
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.61
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.59
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.55
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.54
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.53
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.47
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.43
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.41
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.37
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	96.34
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.32
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.3
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.23
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.17
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.15
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.15
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.09
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.99
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.97
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.92
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.92
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.88
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.85
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.78
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.75
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.62
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.6
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.52
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.48
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.45
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.44
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.33
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.3
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.01
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.01
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.98
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	94.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.57
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.36
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	93.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	93.52
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	92.92
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.85
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	92.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.62
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	92.44
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.09
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.75
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.44
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.36
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	91.07
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.04
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	90.94
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.32
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.29
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	88.92
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	88.88
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.84
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.83
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	88.3
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.16
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.1
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	87.5
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	87.49
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	86.53
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	86.37
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.2
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	85.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	85.59
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.52
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.39
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	85.21
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	85.21
3fwy_A	314	Light-independent protochlorophyllide reductase I	85.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.08
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	84.99
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.9
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	84.87
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	84.67
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	84.6
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	84.44
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	84.18
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	84.11
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	84.08
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	83.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.89
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	83.87
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.83
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	83.69
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	83.42
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	83.39
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	83.34
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	83.27
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	83.25
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.24
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	83.2
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	83.13
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	83.12
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.1
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	83.0
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	82.98
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	82.91
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	82.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	82.86
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	82.75
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	82.68
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.65
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	82.63
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	82.61
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	82.59
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	82.53
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	82.52
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	82.5
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	82.47
4dqx_A	277	Probable oxidoreductase protein; structural genomi	82.46
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	82.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	82.43
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	82.43
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	82.41
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	82.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	82.33
4fk1_A	304	Putative thioredoxin reductase; structural genomic	82.32
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	82.32
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	82.26
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	82.23
3imf_A	257	Short chain dehydrogenase; structural genomics, in	82.22
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	82.21
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	82.13
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	82.12
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	82.1
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	82.08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	82.08
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	82.07
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	82.07
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	82.06
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	82.02
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	81.99
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	81.98
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	81.95
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	81.93
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	81.86
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	81.79
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	81.78
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	81.69
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	81.69
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	81.67
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	81.66
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	81.62
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.61
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	81.6
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	81.59
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	81.57
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	81.56
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.51
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	81.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	81.44
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	81.43
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	81.42
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	81.32
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	81.3
3rih_A	293	Short chain dehydrogenase or reductase; structural	81.27
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	81.23
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	81.18
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	81.11
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.09
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	81.07
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	81.06
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	80.96
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	80.96
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	80.96
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	80.95
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.92
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	80.92
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	80.89
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	80.84
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	80.83
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	80.75
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.73
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	80.61
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	80.55
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	80.51
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	80.5
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	80.5
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	80.48
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	80.47
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	80.39
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	80.37
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	80.35
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	80.34
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.32
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	80.25
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	80.18
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	80.12
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	80.09
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	80.09
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	80.07
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	80.07
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	80.05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	80.05
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	80.04
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	80.04
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	80.04
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	80.02
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	80.01

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=6.2e-35  Score=307.38  Aligned_cols=371  Identities=15%  Similarity=0.173  Sum_probs=237.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r--~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||||||| |+|+++|..||++|++|+||||++.++.+.  ...|++..   +..+|+.....   .+..+....++..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~---l~~l~~~~~~~---~~~~~~~~~~~~~   77 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGI---LNEADIKADRS---FIANEVKGARIYG   77 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHH---HHHTTCCCCTT---TEEEEESEEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHH---HHHcCCCchhh---hhhcccceEEEEe
Confidence            599999995 679999999999999999999998765442  24566543   45556653221   1222221111111


Q ss_pred             cCCC-cc-----cccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEE-E-cCC--cEEEccEEEEe
Q 007945          187 EGKG-EI-----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-L-AEG--KILSSHLIIDA  256 (584)
Q Consensus       187 ~~~~-~l-----~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~-~-~~G--~~i~ArlVIdA  256 (584)
                      .+.. .+     ......++.+++..|++.|.+++.+.|++++.+++++++..+++.++.. . .++  .+++|++||+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgA  157 (397)
T 3oz2_A           78 PSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAA  157 (397)
T ss_dssp             TTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeC
Confidence            1110 00     0112234679999999999999999999999999999999988876532 2 233  36999999999


Q ss_pred             cCCChHHHhHhcCCCC---CCceeeEEEEeeeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945          257 MGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (584)
Q Consensus       257 DG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~  332 (584)
                      ||.+|.++++++....   +..............+ +.+..++++.  ...+     .+++| .||.+++.  ...++..
T Consensus       158 dG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~g~~~-~~~~~~~~--~~vg~~~  227 (397)
T 3oz2_A          158 DGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLG--SIAP-----AGYIW-VFPKGEGM--ANVGIGS  227 (397)
T ss_dssp             CCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECS--TTST-----TEEEE-EEEEETTE--EEEEEEE
T ss_pred             CccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeee--ccCC-----CceEE-Eeecccce--eEEEEee
Confidence            9999999999865322   2222211111111222 2334444432  2232     57888 68887652  2233333


Q ss_pred             ccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945          333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (584)
Q Consensus       333 ~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~l  412 (584)
                      ..+......++.++++++++..|.+...     +..+...+.+|... ...++..+|++++|||||.++|++|+|++.++
T Consensus       228 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~-----~~~~~~~~~~~~~~-~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~  301 (397)
T 3oz2_A          228 SINWIHNRFELKNYLDRFIENHPGLKKG-----QDIQLVTGGVSVSK-VKMPITMPGLMLVGDAARLIDPITGGGIANAI  301 (397)
T ss_dssp             ETTTSCSHHHHHHHHHHHHHTCHHHHTS-----EEEEEEEEEEECCC-CCSCCEETTEEECGGGGTCSCTTTCCCHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHhCcccccc-----ceeeeeeccccccC-cccceeeeeEEEcccccccCCCCcchhHHHHH
Confidence            3222222336778888888777665432     22334446677643 33467789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHH---HHhhccccCCCChHHHHHHHHHHHHHHHhcCCcccc
Q 007945          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ---RAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLR  489 (584)
Q Consensus       413 r~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~---k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~  489 (584)
                      .++..||+.|.++++.++.+...   |+.|+..++..+...   ..........++++++|.+++.+.    +   .   
T Consensus       302 ~~g~~~A~~i~~~l~~~~~~~~~---L~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~---  368 (397)
T 3oz2_A          302 VSGMYAAQVTKEAIESNDYSPQM---MQKYEKLIKERFERKHLRNWVAKEKLAMLSDDTLDKLVDIVS----E---Q---  368 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT----T---S---
T ss_pred             HHHHHHHHHHHHHHHcCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----H---H---
Confidence            99999999999999999887766   677887776654211   111112234457777665554332    2   1   


Q ss_pred             cccccccchhHHHHHHHHHHHhCCCChHHHH
Q 007945          490 PFLQDVIKFGPLAKTLGLVMLNKPQIIPSIF  520 (584)
Q Consensus       490 ~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~  520 (584)
                       .++ .+++.   .++.+++.++|++++..-
T Consensus       369 -~~~-~~~~~---~~~k~~~~~~p~~~~~l~  394 (397)
T 3oz2_A          369 -VLT-TISVE---AILKAIAEKYPEVVKELE  394 (397)
T ss_dssp             -CBC-SCSHH---HHHHHHHHHCGGGGGGGG
T ss_pred             -Hhh-hcCHH---HHHHHHHHHCHHHHHHHH
Confidence             111 23443   345677899999977653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.97  E-value=6.2e-29  Score=270.11  Aligned_cols=376  Identities=16%  Similarity=0.139  Sum_probs=221.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--Cc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--RE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~--~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      +|||||||| ++|+++|..|+++|++|+||||++.++  .. ....++   ...|.++|+....  ...+...+..  +.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~---~~~l~~lg~~~~~--~~~~~~~~~~--~~   78 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS---KAHFDKLGMPYPK--GEELENKING--IK   78 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEE---HHHHHHTTCCCCC--GGGEEEEEEE--EE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCccccccccc---HHHHHHhcCCCCc--hHHHHhhhcc--eE
Confidence            599999996 579999999999999999999998642  11 123343   3566777876431  1111111111  11


Q ss_pred             ecC-CC--cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEe
Q 007945          186 FEG-KG--EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDA  256 (584)
Q Consensus       186 f~~-~~--~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdA  256 (584)
                      +.. ..  .+..+ ...+.+++..|++.|.+++.+.|++++.+++|+++..+++.++ |++.   +|+  +++|++||+|
T Consensus        79 ~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~A  157 (453)
T 3atr_A           79 LYSPDMQTVWTVN-GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEA  157 (453)
T ss_dssp             EECTTSSCEEEEE-EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEEC
T ss_pred             EECCCCceEEeEC-CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEEC
Confidence            111 00  11111 1245689999999999999999999999999999998888765 5554   565  7999999999


Q ss_pred             cCCChHHHhHhcCCCC------CCceeeEEEEeee---ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945          257 MGNFSPVVKQIRSGRK------PDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (584)
Q Consensus       257 DG~~S~v~rql~~~~~------~~~~~~~vg~~a~---g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~  327 (584)
                      ||.+|.++++++...+      +...+..+.....   ...+.....+++.. +..+     .+|+| .||.+++.  ..
T Consensus       158 dG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~~~-~~P~~~~~--~~  228 (453)
T 3atr_A          158 TGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQ-ETSP-----GGYWW-YFPKGKNK--VN  228 (453)
T ss_dssp             CGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCT-TTST-----TSCEE-EEEEETTE--EE
T ss_pred             cCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECC-CCCC-----CcEEE-EEECCCCe--EE
Confidence            9999999998865321      1122221111111   11112222333322 1222     46888 69987652  22


Q ss_pred             EEEEEccCCCCCCccHHHHHHHHHhh-CcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945          328 TYMFTYIDPQAGSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (584)
Q Consensus       328 ~~L~~~~~~~~~~~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg  406 (584)
                      .++....+..  ..+..+.+.++++. .|.+..     .++.+...+.+|... ...++..+|++++|||||.++|++|+
T Consensus       229 vg~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~p~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~  300 (453)
T 3atr_A          229 VGLGIQGGMG--YPSIHEYYKKYLDKYAPDVDK-----SKLLVKGGALVPTRR-PLYTMAWNGIIVIGDSGFTVNPVHGG  300 (453)
T ss_dssp             EEEEEESSSC--CCCHHHHHHHHHHHHCTTEEE-----EEEEEEEEEEEECSS-CCSCSEETTEEECGGGGTCSCTTTCC
T ss_pred             EEEEecCCCC--CCCHHHHHHHHHHhhhhhcCC-----CeEEeccceeccCCC-CCCceecCCEEEEeCcccCCCCCccc
Confidence            2222222211  12344455555533 333322     233334445667632 22356689999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHH-HHHHh-hc-cccCCCChHHHHHHHHHHHHHHHhc
Q 007945          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWL-FQRAM-SA-KQQSDVSPDFINELLYVNFQCMQKL  483 (584)
Q Consensus       407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~-l~k~m-~~-~~~~~~~~~~in~ll~~~f~~~~~l  483 (584)
                      |++.++.++..||+.|.++++.++.+...   |+.|+..++..+. .++.+ .+ .....++++.++.++...     -|
T Consensus       301 G~~~Ai~da~~la~~l~~~l~~~~~~~~~---L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l  372 (453)
T 3atr_A          301 GKGSAMISGYCAAKAILSAFETGDFSASG---LWDMNICYVNEYGAKQASLDIFRRFLQKLSNDDINYGMKKK-----II  372 (453)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCSTTT---TTHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-----SS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHc-----CC
Confidence            99999999999999999999866554444   6677765544321 11111 11 112234555555443211     14


Q ss_pred             CCcccccc-cccccchhHHHHHHHHHHH--hCCCChHHH
Q 007945          484 GDPVLRPF-LQDVIKFGPLAKTLGLVML--NKPQIIPSI  519 (584)
Q Consensus       484 p~~~~~~f-l~d~~~~~~l~~~~~~~~~--~~P~~~~~~  519 (584)
                      +......| -.+++++..+.+ +..+.+  ++|++++..
T Consensus       373 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l  410 (453)
T 3atr_A          373 KEEDLLEASEKGDLHLSVADK-AMRVISGLGRPSLLFKL  410 (453)
T ss_dssp             CHHHHHHHHHHCCCCHHHHHH-HHHHHTTCCSCCGGGGH
T ss_pred             ChHHHHHHhhcCCccccHHHH-HHHHHHhcCChHHHHHH
Confidence            44544555 334454443333 333555  789887543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.96  E-value=1.9e-28  Score=274.23  Aligned_cols=311  Identities=17%  Similarity=0.112  Sum_probs=194.1

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh-cc-cCCc--
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-TK-FNPN--  182 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~-~~-~~~~--  182 (584)
                      .+|||||||| ++|+++|+.|+++|++|+||||.+.+.. .+...++...++.|..+|+++...-..... .. |...  
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~  127 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT  127 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence            3699999996 5799999999999999999999987642 355679999999999999875421111000 00 1111  


Q ss_pred             -eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cCC-cEEEccEEEEecC
Q 007945          183 -RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG-KILSSHLIIDAMG  258 (584)
Q Consensus       183 -~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~--~~G-~~i~ArlVIdADG  258 (584)
                       .+.+.   .+..+....+.+++..|.+.|.+++.+.|++++.+++|++++.++++++|++  .+| ++++|++||+|||
T Consensus       128 ~~~~~~---~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          128 QGLDFG---LVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG  204 (570)
T ss_dssp             TCCBGG---GSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred             cccccc---ccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence             11111   1111223345689999999999999999999999999999999889998888  567 6899999999999


Q ss_pred             CChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCcc-EEEEEEcc
Q 007945          259 NFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR-TTYMFTYI  334 (584)
Q Consensus       259 ~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~-~~~L~~~~  334 (584)
                      .+|.+|++++...+   +...+.+. .+  ..+.... .  ... ...     ..+++|..+|.+++.  . ..++....
T Consensus       205 ~~S~vR~~lGi~~~~~~~~~~~~~~-~v--~~~~~~~-~--~~~-~~~-----~~G~~~~~~P~~~g~--~~~i~~~~~~  270 (570)
T 3fmw_A          205 GRSTVRRLAADRFPGTEATVRALIG-YV--TTPEREV-P--RRW-ERT-----PDGILVLAFPPEGGL--GPGWSSSSTG  270 (570)
T ss_dssp             SSCHHHHHTTCCCCCCCCCEEEEEE-EC--CCCSCSS-C--CCC-CCC-----CSSCEEECCCC--------CEEEEEES
T ss_pred             CCchHHHHcCCCCccceeeeEEEEE-EE--EecCCCc-c--eEE-Eec-----CCEEEEEEeecCCCe--EEEEEEEeCC
Confidence            99999999875432   22222111 10  1111110 0  000 011     235666337987652  1 12222222


Q ss_pred             CCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      ....   ...+.+++.+.+-+.++..    +...+... ....+|.......++..+||+|+|||||.++|++|||+|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~g  345 (570)
T 3fmw_A          271 HSPAADEGPVTLEDLGAAVARVRGTP----LTLTEPVS-WLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTG  345 (570)
T ss_dssp             CC-----CCCCHHHHHHHTTSSSSCC----CCCCSCCE-EEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHH
T ss_pred             CCccccccCCCHHHHHHHHHHHhhcc----cccceeee-eeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHH
Confidence            1111   1124555444433333311    11111110 12345654434456778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ++|+..|++.|+.+++. ..+...   |..|+..
T Consensus       346 l~DA~~La~~La~~~~g-~~~~~l---L~~Ye~e  375 (570)
T 3fmw_A          346 LQDAVNLGWKLAARVRG-WGSEEL---LDTYHDE  375 (570)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-CCcHHH---HHHHHHH
Confidence            99999999999999864 223333   5566653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.96  E-value=2.7e-27  Score=260.84  Aligned_cols=309  Identities=15%  Similarity=0.175  Sum_probs=195.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhh-hcccCCceee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG  185 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v~  185 (584)
                      .++||+|||| ++|+++|+.|+++|++|+||||.+.+.. .+...++..+++.|..+|++++..-.... ...+....+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            3799999995 5799999999999999999999987643 35567999999999999987542111000 0001111111


Q ss_pred             ecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc---EEEccEEEEecCCChH
Q 007945          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       186 f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~---~i~ArlVIdADG~~S~  262 (584)
                      +.   .+..+....+.+++..|++.|.+++.+.|++++.+++|++++.++++++|++.++.   +++|++||+|||.+|.
T Consensus        91 ~~---~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           91 FG---VLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             GG---GSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             cc---cCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence            11   11111223456899999999999999999999999999999999999999987764   8999999999999999


Q ss_pred             HHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC-
Q 007945          263 VVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA-  338 (584)
Q Consensus       263 v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~-  338 (584)
                      +|++++...+   +...+..+ .+  ..++.. ..+.+.   ..     ..+++| .+|.+++.  ...++........ 
T Consensus       168 VR~~lg~~~~~~~~~~~~~~~-~v--~~~~~~-~~~~~~---~~-----~~g~~~-~~P~~~g~--~~~~~~~~~~~~~~  232 (499)
T 2qa2_A          168 VRKAAGFDFPGTSASREMFLA-DI--RGCEIT-PRPIGE---TV-----PLGMVM-SAPLGDGV--DRIIVCERGAPARR  232 (499)
T ss_dssp             HHHHTTCCCCEECCCCCEEEE-EE--ESCCCC-CEEEEE---EE-----TTEEEE-EEECSSSC--EEEEEEETTCCCCC
T ss_pred             HHHHcCCCCCCCCCccEEEEE-EE--EECCCC-cceEEE---EC-----CCeEEE-EEEcCCCE--EEEEEEecCCCCcc
Confidence            9999865432   22222111 11  011100 111110   11     135666 68987652  2222222222111 


Q ss_pred             --CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHH
Q 007945          339 --GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLG  416 (584)
Q Consensus       339 --~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~  416 (584)
                        ...+.+++.+.+-+.++.  .....+..+.    ..++.......++..+||+|+|||||.++|++|+|+|++++|+.
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~  306 (499)
T 2qa2_A          233 RTGPPPYQEVAAAWQRLTGQ--DISHGEPVWV----SAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSV  306 (499)
T ss_dssp             CSSSCCHHHHHHHHHHHHSC--CCTTCEEEEE----EEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhCC--CCCccceeEE----EEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHH
Confidence              112444444433332221  1111122211    23344322334667799999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          417 RLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       417 ~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      .|++.|+.+++. ......   |..|+..
T Consensus       307 ~La~~La~~l~g-~~~~~~---L~~Ye~e  331 (499)
T 2qa2_A          307 NLGWKLAAVVSG-RAPAGL---LDTYHEE  331 (499)
T ss_dssp             HHHHHHHHHHTT-SSCTHH---HHHHHHH
T ss_pred             HHHHHHHHHHcC-CCChHH---HHHHHHH
Confidence            999999998853 222223   5566643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.96  E-value=4e-27  Score=259.53  Aligned_cols=310  Identities=15%  Similarity=0.126  Sum_probs=193.9

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhh-hcccCCcee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT-ATKFNPNRC  184 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v  184 (584)
                      ..++||||||| ++|+++|+.|+++|++|+||||.+.+.. .+...++...++.|..+|++++..-.... ...|....+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            34799999995 5799999999999999999999987643 35567999999999999987542111000 000111111


Q ss_pred             eecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc---EEEccEEEEecCCCh
Q 007945          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGNFS  261 (584)
Q Consensus       185 ~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~---~i~ArlVIdADG~~S  261 (584)
                      .+.   .+..+....+.+++..|++.|.+++.+.|++++.+++|++++.++++++|++.++.   +++|++||+|||.+|
T Consensus        89 ~~~---~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           89 DFG---VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EGG---GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             ccc---cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            111   11111223456899999999999999999999999999999999999999887764   799999999999999


Q ss_pred             HHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC
Q 007945          262 PVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA  338 (584)
Q Consensus       262 ~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~  338 (584)
                      .+|++++...+   +...+... .+  ..++.. ..+.+.   ..     ..+++| .+|.+++.  ...+++.......
T Consensus       166 ~VR~~lg~~~~~~~~~~~~~~~-~~--~~~~~~-~~~~~~---~~-----~~g~~~-~~p~~~g~--~~~~~~~~~~~~~  230 (500)
T 2qa1_A          166 SVRKAAGFDFPGTAATMEMYLA-DI--KGVELQ-PRMIGE---TL-----PGGMVM-VGPLPGGI--TRIIVCERGTPPQ  230 (500)
T ss_dssp             HHHHHTTCCCCEECCCCEEEEE-EE--ESCCCC-CEEEEE---EE-----TTEEEE-EEEETTTE--EEEEEEETTCCC-
T ss_pred             HHHHHcCCCcCCCccceEEEEE-EE--EeCCCC-CceEEE---EC-----CCcEEE-EEEcCCCE--EEEEEEcCCCCCc
Confidence            99999875432   22222111 11  011100 111110   11     135666 68877551  2222222222111


Q ss_pred             ---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHH
Q 007945          339 ---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHL  415 (584)
Q Consensus       339 ---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~  415 (584)
                         ...+.+++.+.+.+.++.  .....+..+.    ..++.......++..+||+|+|||||.++|++|+|+|++++|+
T Consensus       231 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA  304 (500)
T 2qa1_A          231 RRETPPSWHEVADAWKRLTGD--DIAHAEPVWV----SAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDA  304 (500)
T ss_dssp             ----CCCHHHHHHHHHHHHSC--CCTTSEEEEE----EEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHhcCC--CCCccceeEE----EEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHH
Confidence               112444444333222221  1111122221    1233322233456779999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          416 GRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       416 ~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                      ..|++.|+.+++. ......   |..|+..
T Consensus       305 ~~La~~La~~~~g-~~~~~~---L~~Y~~e  330 (500)
T 2qa1_A          305 VNLGWKLGAVVNG-TATEEL---LDSYHSE  330 (500)
T ss_dssp             HHHHHHHHHHHTT-SSCHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCChHH---HHHHHHH
Confidence            9999999998853 222333   5566653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.95  E-value=8.1e-27  Score=249.23  Aligned_cols=307  Identities=16%  Similarity=0.100  Sum_probs=187.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|||||||| ++|+++|..|+++|++|+||||.+.++. .+...+++..++.|..+|+++...  .   .......+.+.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~--~---~~~~~~~~~~~   97 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIME--T---FGGPLRRMAYR   97 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHH--H---HSCCCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHH--h---hcCCCcceEEE
Confidence            699999996 5799999999999999999999986543 234678899999999999864321  1   11111111111


Q ss_pred             C---CCc---cccc------ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEE
Q 007945          188 G---KGE---IWVE------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIID  255 (584)
Q Consensus       188 ~---~~~---l~~~------~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVId  255 (584)
                      .   +..   +...      ....+.+++..|++.|.+++.+  ++++.+++|++++.++++++|++.+|++++|++||+
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~  175 (407)
T 3rp8_A           98 DFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIA  175 (407)
T ss_dssp             ETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             ECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEE
Confidence            1   000   0000      1234568999999999999977  889999999999999999999999999999999999


Q ss_pred             ecCCChHHHhHh-cCCCCCCc--eeeEEEEeee--ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945          256 AMGNFSPVVKQI-RSGRKPDG--VCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (584)
Q Consensus       256 ADG~~S~v~rql-~~~~~~~~--~~~~vg~~a~--g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L  330 (584)
                      |||.+|.+++++ +....+..  .....+....  ..+.......++     .     ..+++| .+|.+++   ...+.
T Consensus       176 AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~-~~p~~~~---~~~~~  241 (407)
T 3rp8_A          176 ADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFV-----G-----EGKQVS-LMPVSAG---RFYFF  241 (407)
T ss_dssp             CCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEE-----E-----TTEEEE-EEEETTT---EEEEE
T ss_pred             CCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEE-----C-----CCcEEE-EEEcCCC---eEEEE
Confidence            999999999998 54322211  1111111100  000111111111     1     145666 6898765   22222


Q ss_pred             EEcc-CCC-CCC-ccHHHHHHHHHhh-Ccccccc--cCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945          331 FTYI-DPQ-AGS-PKLEELLERYWDL-MPEYQGV--TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (584)
Q Consensus       331 ~~~~-~~~-~~~-~~l~~l~~~~~~~-lp~~~~~--~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Plt  404 (584)
                      +... +.. ... ....+.+.+.+.. .|.+...  ........  .+..+|...  ..++..+|++|+|||||.++|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~rv~LvGDAAh~~~P~~  317 (407)
T 3rp8_A          242 FDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTN--RIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDI  317 (407)
T ss_dssp             EEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCE--EEEEEECCC--CSCCEETTEEECGGGTCCCCGGG
T ss_pred             EEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCcccee--EEeeEecCC--CCceecCCEEEEEcccccCCcch
Confidence            3222 111 111 1333333333322 2222111  00111111  123344422  14567899999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      |+|++++++|+..|++.|..+   +  +  ..+.|+.|+...+.
T Consensus       318 GqG~~~al~da~~La~~L~~~---~--~--~~~~l~~Y~~~r~~  354 (407)
T 3rp8_A          318 GQGGCAAMEDAVVLGAVFRQT---R--D--IAAALREYEAQRCD  354 (407)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSC---C--C--HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcC---C--C--HHHHHHHHHHHHHH
Confidence            999999999999999888632   2  1  22336677765433

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.95  E-value=7e-27  Score=249.99  Aligned_cols=308  Identities=14%  Similarity=0.083  Sum_probs=195.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchh-----hhcccCCce
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA-----TATKFNPNR  183 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~-----i~~~~~~~~  183 (584)
                      +|||||||| ++|+++|+.|+++|++|+||||.+.++......+++..+..+..+|+++...-...     +...+....
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   84 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI   84 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence            599999996 57999999999999999999999876655555677778888888887643110000     000001110


Q ss_pred             eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE--EEcCCc--EEEccEEEEecCC
Q 007945          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAEGK--ILSSHLIIDAMGN  259 (584)
Q Consensus       184 v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V--~~~~G~--~i~ArlVIdADG~  259 (584)
                      ..+.-...........+.+++..|.+.|.+.+.+.|++++.+++|+++..++++++|  .+.+|+  +++|++||+|||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~  164 (421)
T 3nix_A           85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGY  164 (421)
T ss_dssp             EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred             EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence            111100011111223456999999999999999999999999999999998887654  446777  7999999999999


Q ss_pred             ChHHHhHhcCCCCC---CceeeEEEEeeec-cCCCcc--eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEc
Q 007945          260 FSPVVKQIRSGRKP---DGVCLVVGSCARG-FKDNST--SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (584)
Q Consensus       260 ~S~v~rql~~~~~~---~~~~~~vg~~a~g-~~~~~~--~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~  333 (584)
                      +|.++++++...+.   ...+..  ..... .+....  ..+.+...+..     ..+|+| .+|.+++   .....+.+
T Consensus       165 ~s~l~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-~~P~~~~---~~~vg~~~  233 (421)
T 3nix_A          165 GRVIPRMFGLDKPSGFESRRTLF--THIKDVKRPVAAEMEGNRITAVVHK-----PKVWIW-VIPFSNG---NTSVGFVG  233 (421)
T ss_dssp             GCHHHHHTTCEECCSSCCCEEEE--EEEECTTCCC----CCSEEEEEEEE-----TTEEEE-EEECTTS---EEEEEEEE
T ss_pred             chhhHHhcCCCCCCcCCCcEEEE--EEECCCcCCCccCCCCeEEEEEeCC-----CCEEEE-EEEECCC---CEEEEEEe
Confidence            99999988654322   122211  11111 110000  11111111111     357888 6998875   33333332


Q ss_pred             cC--CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945          334 ID--PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (584)
Q Consensus       334 ~~--~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~  411 (584)
                      ..  ......+..+.++++.+..|.+... +...+...+ ...+|.+.....++..+|++++|||||.++|++|+|++.+
T Consensus       234 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A  311 (421)
T 3nix_A          234 EPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFE-PRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFA  311 (421)
T ss_dssp             CHHHHTTSCSCHHHHHHHHHHTCTTTHHH-HTTCCBSSC-CEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHH
T ss_pred             cHHHhhhcCCCHHHHHHHHHHhCcHHHHH-HhcCccccC-ceeecccceeeeeeccCCEEEecccccccCCcccccHHHH
Confidence            21  1111126677788888777665432 222221111 1223443323335677999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCC
Q 007945          412 TRHLGRLSTGVYEAVRGDF  430 (584)
Q Consensus       412 lr~~~~La~~i~~AL~~~~  430 (584)
                      +.++..|++.|.+++..+.
T Consensus       312 ~~~a~~la~~l~~~~~~~~  330 (421)
T 3nix_A          312 MESGSKGGKLAVQFLKGEE  330 (421)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCc
Confidence            9999999999999987654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.95  E-value=2.1e-26  Score=244.52  Aligned_cols=314  Identities=15%  Similarity=0.125  Sum_probs=185.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      +|||+|||| ++|+++|..|+++|++|+|+||.+.+   ...+...+++..++.|..+|+++...  .. ........+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~--~~-~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMA--RD-GLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHH--HH-CEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHH--hc-CCccceEEEE
Confidence            589999996 57999999999999999999998753   22333458888999999999875321  10 0111111111


Q ss_pred             ecCCC-ccccc----ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEE-cCCc--EEEccEEEEe
Q 007945          186 FEGKG-EIWVE----DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLL-AEGK--ILSSHLIIDA  256 (584)
Q Consensus       186 f~~~~-~l~~~----~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~V~~-~~G~--~i~ArlVIdA  256 (584)
                      ..+.. .+..+    ....+.+++..+.+.|.+++.+.|++++.+++|+++..++ +++.|++ .+|+  +++|++||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence            11100 00000    1123456888899999999998999999999999998753 4677777 6776  7999999999


Q ss_pred             cCCChHHHhHhcCCCCC--CceeeEE-EEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEc
Q 007945          257 MGNFSPVVKQIRSGRKP--DGVCLVV-GSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (584)
Q Consensus       257 DG~~S~v~rql~~~~~~--~~~~~~v-g~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~  333 (584)
                      ||.+|.+|++++....+  ....... .......+. ...++++..   .     ..+++| .+|..++   ...+.+..
T Consensus       159 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~-----~~g~~~-~~~~~~~---~~~~~~~~  225 (394)
T 1k0i_A          159 DGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPP-VSHELIYAN---H-----PRGFAL-CSQRSAT---RSQYYVQV  225 (394)
T ss_dssp             CCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCC-SCSSCEEEC---C-----TTCCEE-EEEEETT---EEEEEEEE
T ss_pred             CCCCcHHHHhcCccccccccccccceeEEEecCCCC-CccceEEEE---c-----CCceEE-EEecCCC---cEEEEEEe
Confidence            99999999987543111  1110000 000001110 001111110   0     245666 3554433   23333332


Q ss_pred             cCCCC-CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945          334 IDPQA-GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (584)
Q Consensus       334 ~~~~~-~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~l  412 (584)
                      ..... ...+..+..+++.+.++......+.......  ...+|.......++..+|++|+|||||.++|++|+|+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai  303 (394)
T 1k0i_A          226 PLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLE--KSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAA  303 (394)
T ss_dssp             CTTCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEE--EEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHH
T ss_pred             CCCCCccccCHHHHHHHHHHhhCcccccccccCccee--eEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHH
Confidence            22111 1112233334444443321110111111111  12334332222345679999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       413 r~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~  446 (584)
                      +|+..|++.|..+++.+  +..   .|+.|+...
T Consensus       304 ~da~~La~~L~~~~~~~--~~~---~L~~Y~~~r  332 (394)
T 1k0i_A          304 SDVSTLYRLLLKAYREG--RGE---LLERYSAIC  332 (394)
T ss_dssp             HHHHHHHHHHHHHHHHC--CGG---GGGGHHHHH
T ss_pred             HHHHHHHHHHHHHhccC--chH---HHHHHHHHH
Confidence            99999999999887643  222   367787654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.94  E-value=4.5e-26  Score=251.61  Aligned_cols=321  Identities=18%  Similarity=0.176  Sum_probs=191.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCcccccchhh-----hcccCCc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEAT-----ATKFNPN  182 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~-~L~~lGl~~~~ele~~i-----~~~~~~~  182 (584)
                      +|||||||| ++|+++|+.|+++|++|+||||.+.++......+.+.... .+..+|+++...-....     ...+...
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   86 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE   86 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence            599999996 5799999999999999999999986654444455555443 66777876421100000     0011000


Q ss_pred             ----eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEEcCCc--EEEccEE
Q 007945          183 ----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEGK--ILSSHLI  253 (584)
Q Consensus       183 ----~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv---~V~~~~G~--~i~ArlV  253 (584)
                          .+.|....  .......+.+++..|.+.|.+++.+.|++++.+++|+++..+++.+   ++...+|+  +++|++|
T Consensus        87 ~~~~~~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~V  164 (512)
T 3e1t_A           87 PEPWTFGFTRHP--DDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFI  164 (512)
T ss_dssp             SSCEEEESSSSS--SSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccccccccccCC--CCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEE
Confidence                01111100  1112234568999999999999999999999999999999988854   44445574  8999999


Q ss_pred             EEecCCChHHHhHhcCCCC---CCceeeEEEEeee--ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945          254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (584)
Q Consensus       254 IdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~--g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~  328 (584)
                      |+|||.+|.++++++....   +...+. .+....  ..+.......+..   ..     ..+++| .+|..++   ...
T Consensus       165 I~AdG~~S~vr~~lg~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~~-~~Pl~~~---~~~  231 (512)
T 3e1t_A          165 VDASGNRTRVSQAVGERVYSRFFQNVAL-YGYFENGKRLPAPRQGNILSA---AF-----QDGWFW-YIPLSDT---LTS  231 (512)
T ss_dssp             EECCCTTCSSGGGTCCEEECSTTCEEEE-EEEEESCCCCSTTCTTSEEEE---EE-----TTEEEE-EEECSSS---EEE
T ss_pred             EECCCcchHHHHHcCCCccCchhcceEE-EEEecCCccCCCCCcCceEEE---Ee-----CCceEE-EEEeCCC---eEE
Confidence            9999999999999853211   111221 111110  1111111111110   01     247888 6998865   233


Q ss_pred             EEEEccC--CCCCCccHHHHHHHHHhhCcccccccCCceeEE-EEEeeeec---cccCCCCCccCCCEEEeCCCCCCcCC
Q 007945          329 YMFTYID--PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQ-RVIYGIFP---TYRDSPLPAAFNRILQFGDASGIQSP  402 (584)
Q Consensus       329 ~L~~~~~--~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~-~~~~g~~P---~~~~~~~~~~~~rvlLvGDAA~~v~P  402 (584)
                      ..+.+..  .........+.++++++..|.+... +...+.. ...++.++   .+.....++..+|+++||||||.++|
T Consensus       232 vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P  310 (512)
T 3e1t_A          232 VGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEY-LAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDP  310 (512)
T ss_dssp             EEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHH-HTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCS
T ss_pred             EEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHH-HhcCccccccccccceeeccccccccccccCCEEEEechhhcCCC
Confidence            3333221  1111123566666676655544332 1111100 00001111   11111235567999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHH
Q 007945          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS  449 (584)
Q Consensus       403 ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~  449 (584)
                      ++|+|++++++++..|++.|..+++.+ .+..  +.|+.|+..++..
T Consensus       311 ~~GqG~~~Al~dA~~La~~L~~~l~~~-~~~~--~aL~~Ye~~~~~~  354 (512)
T 3e1t_A          311 VFSSGVHLATYSALLVARAINTCLAGE-MSEQ--RCFEEFERRYRRE  354 (512)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHTTTC-SCHH--HHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHcCC-ccHH--HHHHHHHHHHHHH
Confidence            999999999999999999999988643 2321  2255666655444

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.94  E-value=6.5e-25  Score=249.72  Aligned_cols=361  Identities=14%  Similarity=0.140  Sum_probs=206.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh-----CCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhh---ccc
Q 007945          110 TFDVIVCGG-TLGIFIATALSF-----KGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA---TKF  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr-----~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~  179 (584)
                      ++||+|||| ++|+++|+.|++     .|++|+||||.+.+. ..+...++..+++.|..+|++++..-+....   .-|
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~   87 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   87 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence            689999995 679999999999     999999999987653 2355679999999999999875321000000   001


Q ss_pred             CC---ceee----ecCCCcccccccccceeCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEeC--------CeEEEE
Q 007945          180 NP---NRCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTYE--------NAAVLL  241 (584)
Q Consensus       180 ~~---~~v~----f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G---~~i~~~t~v~~v~~~~--------~gv~V~  241 (584)
                      ++   ..+.    +.. ..........+.+++..+++.|.+++.+.|   +++..+++++++..++        ++|+|+
T Consensus        88 ~~~~~g~i~~~~~~~~-~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~  166 (665)
T 1pn0_A           88 NPDENGHIRRTDRIPD-TLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMT  166 (665)
T ss_dssp             EECTTSCEEEEEEEES-SCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEE
T ss_pred             eCCCCcceEeecccCc-ccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEE
Confidence            10   1111    000 000011112345899999999999999887   7999999999998875        467776


Q ss_pred             Ec------------------------------------------CC--cEEEccEEEEecCCChHHHhHhcCCCCCCcee
Q 007945          242 LA------------------------------------------EG--KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC  277 (584)
Q Consensus       242 ~~------------------------------------------~G--~~i~ArlVIdADG~~S~v~rql~~~~~~~~~~  277 (584)
                      +.                                          +|  ++++|++||+|||.+|.+|++++...+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~  246 (665)
T 1pn0_A          167 LRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTD  246 (665)
T ss_dssp             EEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEE
T ss_pred             EEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCcc
Confidence            53                                          34  47999999999999999999997543211111


Q ss_pred             eEEEEe---e-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCC-------CCCccHHHH
Q 007945          278 LVVGSC---A-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-------AGSPKLEEL  346 (584)
Q Consensus       278 ~~vg~~---a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~-------~~~~~l~~l  346 (584)
                      ...+..   . ..+++... ...+..   .     ..+++| .+|..++   ...+.+......       ....+.+++
T Consensus       247 ~~~~v~d~~~~~~~p~~~~-~~~~~~---~-----~~g~~~-~~P~~~~---~~r~~~~~~~~~~~~~~~~~~~~t~e~~  313 (665)
T 1pn0_A          247 YIWGVLDAVPASNFPDIRS-RCAIHS---A-----ESGSIM-IIPRENN---LVRFYVQLQARAEKGGRVDRTKFTPEVV  313 (665)
T ss_dssp             EEEEEEEEEEECCCTTTTS-EEEEEC---S-----SSCEEE-EEECSTT---CEEEEEEECC----------CCCCHHHH
T ss_pred             EEEEEEEEEECCCCCCcce-EEEEEe---C-----CCceEE-EEEcCCC---EEEEEEEeCCccccccccCcCCCCHHHH
Confidence            011111   0 01211100 111100   0     134555 5787755   222222222211       011244444


Q ss_pred             HHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCcc-CCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHH
Q 007945          347 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  425 (584)
Q Consensus       347 ~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~-~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~A  425 (584)
                      .+.+.+.+..+. ..+..+.+    +..++.......++. .+||+|+|||||.++|+.|||+|.+++|+..|++.|+.+
T Consensus       314 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~v  388 (665)
T 1pn0_A          314 IANAKKIFHPYT-FDVQQLDW----FTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLV  388 (665)
T ss_dssp             HHHHHHHHTTSC-CEEEEEEE----EEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccc-CceeeEEE----EEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHH
Confidence            444333322111 11111111    223343222234566 699999999999999999999999999999999999998


Q ss_pred             HhCCCCChhhhHhhhchhhh--------hhHHHHHHHHhhccccCC------CChHHHHHHHHHHHHHHHhcCCcccccc
Q 007945          426 VRGDFVDSYSLSLLNPYMPN--------LSASWLFQRAMSAKQQSD------VSPDFINELLYVNFQCMQKLGDPVLRPF  491 (584)
Q Consensus       426 L~~~~ls~~~l~~L~~Ye~~--------~~~~~~l~k~m~~~~~~~------~~~~~in~ll~~~f~~~~~lp~~~~~~f  491 (584)
                      ++. ......   |..|+..        +..+..+.+.|.......      ...+.+.+.+.........++.+|..+-
T Consensus       389 l~g-~a~~~l---L~tYe~eR~p~a~~~i~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Y~~s~  464 (665)
T 1pn0_A          389 LTG-RAKRDI---LKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDENL  464 (665)
T ss_dssp             HTT-CBCGGG---GHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCSBT
T ss_pred             HcC-CCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhhccccccCcccCCCc
Confidence            863 222322   4455532        233334555555432211      1223333333333233345777776665


Q ss_pred             cc
Q 007945          492 LQ  493 (584)
Q Consensus       492 l~  493 (584)
                      |.
T Consensus       465 l~  466 (665)
T 1pn0_A          465 VT  466 (665)
T ss_dssp             TB
T ss_pred             cc
Confidence            53

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.94  E-value=6.7e-25  Score=243.25  Aligned_cols=313  Identities=19%  Similarity=0.102  Sum_probs=187.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhc----------
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATAT----------  177 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~----------  177 (584)
                      ++||||||| ++|+++|+.|+++|++|+||||++... ..+...++...++.|.++|++++..-......          
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   84 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA   84 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence            699999996 579999999999999999999998654 34556799999999999998643211000000          


Q ss_pred             -ccCCceee-----ecC---CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEcC
Q 007945          178 -KFNPNRCG-----FEG---KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAE  244 (584)
Q Consensus       178 -~~~~~~v~-----f~~---~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~~  244 (584)
                       ......+.     +..   ......+. ..+.+++..|.+.|.+++.+.|++++.+++|+++..+++    +++|++.+
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~  163 (535)
T 3ihg_A           85 ESVRGEILRTVSESFDDMVAATEPCTPA-GWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG  163 (535)
T ss_dssp             SSSSSCEEEEEESCHHHHHHTTGGGCSC-CCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE
T ss_pred             eccCCceeeeccccccccccccccCCCC-cccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc
Confidence             00011110     000   00000111 135689999999999999999999999999999999998    99998877


Q ss_pred             C---cEEEccEEEEecCCChHHHhHhcCCCCCCcee-eEEEEeee-ccCC---CcceeEEccCCcccccCCCCceEEEEE
Q 007945          245 G---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC-LVVGSCAR-GFKD---NSTSDVIYSSSSVKKVGDSEVQLFWEA  316 (584)
Q Consensus       245 G---~~i~ArlVIdADG~~S~v~rql~~~~~~~~~~-~~vg~~a~-g~~~---~~~~di~~~~~~~~~~~~~~~~~~W~~  316 (584)
                      +   .+++|++||+|||.+|.++++++...+..... ..+..... .++.   ......++..   .+     .+..| .
T Consensus       164 ~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p-----~~~~~-~  234 (535)
T 3ihg_A          164 PDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLH---HP-----EFKGT-F  234 (535)
T ss_dssp             TTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEE---CS-----SCEEE-E
T ss_pred             CCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEE---CC-----CceEE-E
Confidence            5   68999999999999999999986543211100 00000000 1110   0000000000   01     12233 3


Q ss_pred             ccCCCCCCccEEEEEEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEe
Q 007945          317 FPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQF  393 (584)
Q Consensus       317 fP~~~g~~~~~~~L~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLv  393 (584)
                      +|..++  +...+.+.+......   ..+.+++.+.+.+.++. ..   ..+++..  ...+|.......++..+||+|+
T Consensus       235 ~p~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~-~~---~~~~~~~--~~~~~~~~~~a~~~~~grv~Lv  306 (535)
T 3ihg_A          235 GPTDRP--DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDA-PE---VKPELVD--IQGWEMAARIAERWREGRVFLA  306 (535)
T ss_dssp             EECSST--TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTC-SS---CCCEEEE--EEEEEEEEEEESCSEETTEEEC
T ss_pred             EEecCC--CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCC-CC---CceeEEE--eeEeeeeEEEECccccCCEEEE
Confidence            465532  123333333321111   11222222222222111 01   1122222  1233443323346677999999


Q ss_pred             CCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945          394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP  444 (584)
Q Consensus       394 GDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~  444 (584)
                      |||||.++|++|+|+|++++|+..|++.|+.+++.. .....   |..|+.
T Consensus       307 GDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~-~~~~l---L~~Ye~  353 (535)
T 3ihg_A          307 GDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQ-AGAGL---LDTYED  353 (535)
T ss_dssp             TTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTS-SCTTH---HHHHHH
T ss_pred             ecccccCCCccCCccccccccHHHHHHHHHHHhcCC-CcHHH---HHhhHH
Confidence            999999999999999999999999999999988542 23333   555654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.94  E-value=3.9e-26  Score=243.08  Aligned_cols=310  Identities=15%  Similarity=0.107  Sum_probs=190.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCC------
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNP------  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~------  181 (584)
                      ++||+|||| ++|+++|..|+++|++|+||||++.++. .....++...++.|..+|+++...  .. ...+..      
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~--~~-~~~~~~~~~~~~   82 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVT--RR-GGRVRHELEVYH   82 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHH--HT-TCEEECEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHH--Hh-CCCcceeEEEeC
Confidence            589999996 5799999999999999999999876532 234568888888999999764321  10 000100      


Q ss_pred             -c--eeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEE
Q 007945          182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIID  255 (584)
Q Consensus       182 -~--~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVId  255 (584)
                       .  ...+.. ..+.. ..+++.+++..|.+.|.+++.+. |++++.+++|++++.+++++  .|++.+|++++|++||+
T Consensus        83 ~g~~~~~~~~-~~~~~-~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A           83 DGELLRYFNY-SSVDA-RGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             TTEEEEEEET-TSSCG-GGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCEEEecch-HHhcc-cCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEE
Confidence             0  011111 01111 12345689999999999999988 89999999999999988888  89998888999999999


Q ss_pred             ecCCChHHHhHhcCCCCCC----c---eeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945          256 AMGNFSPVVKQIRSGRKPD----G---VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (584)
Q Consensus       256 ADG~~S~v~rql~~~~~~~----~---~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~  328 (584)
                      |||.+|.++++++...+..    +   .+. .+.+....+. . . .++  .+       ..+++| .+|.+++   ...
T Consensus       161 AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~-~~~~~~~~~~-~-~-~~~--~~-------~~~~~~-~~p~~~~---~~~  223 (399)
T 2x3n_A          161 ADGIASYVRRRLLDIDVERRPYPSPMLVGT-FALAPCVAER-N-R-LYV--DS-------QGGLAY-FYPIGFD---RAR  223 (399)
T ss_dssp             CCCTTCHHHHHTSCCCCCCCCCSSCEEEEE-EECCHHHHHC-E-E-EEE--CT-------TSCEEE-EEEETTT---EEE
T ss_pred             CCCCChHHHHHhCCCccccCCCCCCceEEE-EEEecCCCCC-c-c-EEE--cC-------CCcEEE-EEEcCCC---EEE
Confidence            9999999999886543211    1   111 1111001111 1 1 111  00       035666 5887653   222


Q ss_pred             EEEEccCCCCC---C-ccHHHHHHHHHhhC-cccc-cccCCceeEEEEEeeeecccc-CCCCCccCCCEEEeCCCCCCcC
Q 007945          329 YMFTYIDPQAG---S-PKLEELLERYWDLM-PEYQ-GVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQS  401 (584)
Q Consensus       329 ~L~~~~~~~~~---~-~~l~~l~~~~~~~l-p~~~-~~~l~~~~~~~~~~g~~P~~~-~~~~~~~~~rvlLvGDAA~~v~  401 (584)
                      +.+.+......   . .+.+++. ++++.+ +.+. . .++...  ......+|++. ....++..+|++|+|||||.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~  299 (399)
T 2x3n_A          224 LVVSFPREEARELMADTRGESLR-RRLQRFVGDESAE-AIAAVT--GTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVH  299 (399)
T ss_dssp             EEEECCHHHHHHHHHSTTSHHHH-HHHHTTCCGGGHH-HHHTCC--CSTTCEECCCCCEECSCSEETTEEECGGGTEECC
T ss_pred             EEEEeCccccccccccCCHHHHH-HHHhhcCCcchhh-HHhcCC--ccceEEechhhcccccccccCcEEEEechhccCC
Confidence            22212110000   0 0112222 222222 2221 1 011110  00113456553 2233567799999999999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          402 PVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       402 PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      |++|+|++.+++|+..|++.|..+++.+. +.  -+.|+.|+...+.
T Consensus       300 P~~GqG~~~al~da~~La~~L~~~~~~~~-~~--~~~l~~Y~~~r~~  343 (399)
T 2x3n_A          300 PITGQGMNLAIEDASALADALDLALRDAC-AL--EDALAGYQAERFP  343 (399)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTSS-CH--HHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHhhhcccc-hH--HHHHHHHHHHhcc
Confidence            99999999999999999999999886442 11  2236677765443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.94  E-value=4.8e-26  Score=255.54  Aligned_cols=324  Identities=14%  Similarity=0.095  Sum_probs=196.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhh-----hcccCC--
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEAT-----ATKFNP--  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i-----~~~~~~--  181 (584)
                      ++||||||| ++|+++|+.|+++|++|+||||.+.++......+++.....|..+|+++...-....     ...+..  
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            589999996 579999999999999999999998776555567888888999999986431100000     000110  


Q ss_pred             --ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEc-CC--cEEEccEEEE
Q 007945          182 --NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLA-EG--KILSSHLIID  255 (584)
Q Consensus       182 --~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~V~~~-~G--~~i~ArlVId  255 (584)
                        ....|.............+.+++..|.+.|.+.+.+.|++++.+++|+++..+ ++.+.|++. +|  .+++|++||+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEE
Confidence              01111110000001123456899999999999999999999999999999876 556778776 66  5799999999


Q ss_pred             ecCCChHHHhHhcCCCCCCceee-EEEEeeec---cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945          256 AMGNFSPVVKQIRSGRKPDGVCL-VVGSCARG---FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (584)
Q Consensus       256 ADG~~S~v~rql~~~~~~~~~~~-~vg~~a~g---~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~  331 (584)
                      |||.+|.++++++.......... .+......   .+.......+..   ..     ..+++| .+|..++   .....+
T Consensus       183 AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~w-~iPl~~~---~~sv~~  250 (591)
T 3i3l_A          183 AGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSI---TF-----EDGWVW-MIPIKDD---LYSVGL  250 (591)
T ss_dssp             CCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEE---EE-----TTEEEE-EEECSSS---EEEEEE
T ss_pred             CCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEE---Ec-----CCcEEE-EEECCCC---eEEEEE
Confidence            99999999999864321110000 01011111   111111111110   01     257888 6998764   223222


Q ss_pred             EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945          332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (584)
Q Consensus       332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~  408 (584)
                      ........   ..+..++++++.+..|.+... +...+.... ...++.+.....++..+|++++|||||.++|++|+|+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGi  328 (591)
T 3i3l_A          251 VVDRSKSAEVREQGADAFYSSTLAKCAKAMDI-LGGAEQVDE-VRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGV  328 (591)
T ss_dssp             EEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHH-HTTCEECSC-CEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHH
T ss_pred             EcCHHHHhhhccCCHHHHHHHHHHhCHHHHHH-HhcCccccC-ceEecccccchhhcccCCEEEEccccccCCCcccccH
Confidence            22221100   013455566666555543321 111111000 0011111111235568999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH
Q 007945          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW  450 (584)
Q Consensus       409 g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~  450 (584)
                      +++++++..|++.|..++..+......   ++.|+..++..+
T Consensus       329 nlAl~dA~~LA~~L~~~l~~~~~~~~a---l~~Y~~~~~~~~  367 (591)
T 3i3l_A          329 HLASQSAVSAAAAIDRITRHGDEKDAV---HAWYNRTYREAY  367 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHH---HHHHHHHHHHHH
Confidence            999999999999999998765432222   556666554443

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.93  E-value=4.5e-24  Score=241.88  Aligned_cols=314  Identities=15%  Similarity=0.158  Sum_probs=186.7

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh---cccC--
Q 007945          109 GTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFN--  180 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~--  180 (584)
                      .++||||||| ++|+++|+.|++ .|++|+||||++.+.. .+...++...++.|..+|++++..-.....   ..|.  
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            3699999995 579999999999 9999999999986543 345678999999999999864311000000   0011  


Q ss_pred             ---Cceee----ecCCCcccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC----eEEEEEc----
Q 007945          181 ---PNRCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN----AAVLLLA----  243 (584)
Q Consensus       181 ---~~~v~----f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~----gv~V~~~----  243 (584)
                         ...+.    +... .........+.+++..+.+.|.+++.+.|+  +++.+++|+++..+++    +++|++.    
T Consensus       111 ~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~  189 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDT-EDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDA  189 (639)
T ss_dssp             TTSTTCEEEEEEEESS-CTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSG
T ss_pred             CCCCcceEeecccCcc-cCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccc
Confidence               01111    0000 000011122468999999999999999987  9999999999988763    5777765    


Q ss_pred             --CC--cEEEccEEEEecCCChHHHhHhcCCCC---CCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEE
Q 007945          244 --EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE  315 (584)
Q Consensus       244 --~G--~~i~ArlVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~  315 (584)
                        +|  ++++|++||+|||.+|.+|++++...+   ....+.++.... ..+++.. ....+..    +     .+++| 
T Consensus       190 ~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~----~-----~g~~~-  258 (639)
T 2dkh_A          190 AHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVR-YKVAIQS----E-----QGNVL-  258 (639)
T ss_dssp             GGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTTTT-SEEEEEE----T-----TEEEE-
T ss_pred             cCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCccc-eeEEEEc----C-----CceEE-
Confidence              45  479999999999999999999875421   111111111111 1222110 0111100    1     35666 


Q ss_pred             EccCCCCCCccEEEEEEccC--CC----CCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCcc---
Q 007945          316 AFPAGSGPLDRTTYMFTYID--PQ----AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA---  386 (584)
Q Consensus       316 ~fP~~~g~~~~~~~L~~~~~--~~----~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~---  386 (584)
                      .+|..++.  ...+.+....  ..    ....+.+++.+.+.+.+..+. ..+..+.+    +..++.......++.   
T Consensus       259 ~~P~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~a~~~~~~~  331 (639)
T 2dkh_A          259 IIPREGGH--LVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYK-LEVKNVPW----WSVYEIGQRICAKYDDVV  331 (639)
T ss_dssp             EEECTTSS--CEEEEEECC-----------CCCHHHHHHHHHHHHTTSC-EEEEEEEE----EEEECCCCEECSCSBSCC
T ss_pred             EEEcCCCc--EEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCccc-CcceeeeE----EEecccccchhhhhhccc
Confidence            58876541  2222222221  01    011244444443323221110 11111111    122332211122333   


Q ss_pred             ---------CCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945          387 ---------FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN  445 (584)
Q Consensus       387 ---------~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~  445 (584)
                               .+||+|+|||||.++|++|+|+|.++.|+..|++.|+.+++. ......   |..|+..
T Consensus       332 ~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g-~a~~~l---L~~Ye~e  395 (639)
T 2dkh_A          332 DAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRK-QCAPEL---LHTYSSE  395 (639)
T ss_dssp             CSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTT-SBCGGG---GHHHHHH
T ss_pred             cccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcC-CCcHHH---HHHHHHH
Confidence                     799999999999999999999999999999999999998863 222222   5666654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.92  E-value=2.7e-23  Score=231.45  Aligned_cols=291  Identities=13%  Similarity=0.094  Sum_probs=177.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhc-----cc---
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT-----KF---  179 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~-----~~---  179 (584)
                      ++||||||| ++|+++|+.|+++|++|+||||.+.+.. .+...++...++.|..+|++++..-......     .|   
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            589999995 5799999999999999999999986542 3456788999999999998643110000000     00   


Q ss_pred             -CCce---eeecCCC---cc-cccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--c
Q 007945          180 -NPNR---CGFEGKG---EI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--K  246 (584)
Q Consensus       180 -~~~~---v~f~~~~---~l-~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G--~  246 (584)
                       ....   +.+....   .. ..+ ...+.+++..|++.|.+++.+.   ++.+++|++++.++++|+|++.+   |  .
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~  181 (549)
T 2r0c_A          106 VGGHEVYRIPLGTADTRATPEHTP-EPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATR  181 (549)
T ss_dssp             BTSCEEEEECCCBTTTSCCCSSCS-SCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             CCCceeEeecccccccccccCCCC-CcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEE
Confidence             0100   1110000   00 011 1235688999999999999877   99999999999998999888765   6  4


Q ss_pred             EEEccEEEEecCCChHHHhHhcCCCC---CCceeeEEEEeeec--cCC---CcceeEEccCCcccccCCCCceEEEEEcc
Q 007945          247 ILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARG--FKD---NSTSDVIYSSSSVKKVGDSEVQLFWEAFP  318 (584)
Q Consensus       247 ~i~ArlVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g--~~~---~~~~di~~~~~~~~~~~~~~~~~~W~~fP  318 (584)
                      +++|++||+|||.+|.+|++++...+   +...+..  .....  +.+   ......++.   ..+    +...+| .+|
T Consensus       182 ~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~~-~~p  251 (549)
T 2r0c_A          182 AVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRN--ILFRAPELRSLLGERAALFFFL---MLS----SSLRFP-LRA  251 (549)
T ss_dssp             EEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEE--EEEECTTHHHHHGGGCCSEEEE---EEE----TTEEEE-EEE
T ss_pred             EEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEE--EEEECCchHHhcCCCCceEEEE---ECC----CCcEEE-EEE
Confidence            79999999999999999999975432   1111111  11110  100   000000000   011    113344 466


Q ss_pred             CCCCCCccEEEEEEccC-CC-CCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCC
Q 007945          319 AGSGPLDRTTYMFTYID-PQ-AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDA  396 (584)
Q Consensus       319 ~~~g~~~~~~~L~~~~~-~~-~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDA  396 (584)
                      ..++.  .  +.+.... .. .....+.+.+++++..     ..   ..++..  ...++.......++..+||+|+|||
T Consensus       252 ~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~--~~~~~~~~~~a~~~~~grv~L~GDA  317 (549)
T 2r0c_A          252 LDGRG--L--YRLTVGVDDASKSTMDSFELVRRAVAF-----DT---EIEVLS--DSEWHLTHRVADSFSAGRVFLTGDA  317 (549)
T ss_dssp             SSSSS--E--EEEEEECSTTCCSCCCHHHHHHHHBCS-----CC---CCEEEE--EEEEEECCEECSCSEETTEEECGGG
T ss_pred             ECCCc--E--EEEEecCCCCCCCHHHHHHHHHHHhCC-----CC---ceeEEE--EecchhHhhhHHhhcCCcEEEEccc
Confidence            64321  1  2222211 11 1112455555544321     11   112221  1223333223345668999999999


Q ss_pred             CCCcCCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 007945          397 SGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  428 (584)
Q Consensus       397 A~~v~PltGgG~g~~lr~~~~La~~i~~AL~~  428 (584)
                      ||.++|++|||+|.+++|+..|++.|+.+++.
T Consensus       318 AH~~~P~~GqG~n~gi~DA~~La~~La~~l~g  349 (549)
T 2r0c_A          318 AHTLSPSGGFGMNTGIGSAADLGWKLAATLRG  349 (549)
T ss_dssp             TEECCCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCccCCccccccHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998863

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.92  E-value=1.3e-24  Score=230.18  Aligned_cols=304  Identities=18%  Similarity=0.104  Sum_probs=181.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .+||+|||| ++|+++|..|+++|++|+||||++.++. .....++...++.|..+|+++..  ..   .......+.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~--~~---~~~~~~~~~~~   85 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--LQ---GSHTPPTYETW   85 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHH--HT---TCBCCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHH--Hh---hCCCccceEEE
Confidence            589999996 5799999999999999999999987653 23456788888899999976431  11   00011111111


Q ss_pred             C-CCcc---cccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          188 G-KGEI---WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       188 ~-~~~l---~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      . +..+   ..+....+.+++..|.+.|.+++.+.|++++.+++|++++.  ++ +|++.+|++++|++||+|||.+|.+
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence            1 1100   00011135689999999999999999999999999999976  45 7888888899999999999999999


Q ss_pred             HhHhcCCCCCC--ceeeEEEEeee-----ccCCC-cceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccC
Q 007945          264 VKQIRSGRKPD--GVCLVVGSCAR-----GFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID  335 (584)
Q Consensus       264 ~rql~~~~~~~--~~~~~vg~~a~-----g~~~~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~  335 (584)
                      +++++....+.  +.....+....     ...+. ...+.+...   .     ..+++| .+|.+++   .....+....
T Consensus       163 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~---~~~~~~~~~~  230 (379)
T 3alj_A          163 RDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFW---P-----RVQRIL-YSPCNEN---ELYLGLMAPA  230 (379)
T ss_dssp             HHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCS---S-----SCCEEE-EEECSSS---EEEEEEEECT
T ss_pred             HHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEE---C-----CCCEEE-EEECCCC---cEEEEEEecC
Confidence            99986422111  10000011100     00000 111211011   1     246777 6898865   2222222221


Q ss_pred             CCCCCccHHHHHHHHHhhCc---cc-ccccCCceeEEEEEeeeeccccC-CCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945          336 PQAGSPKLEELLERYWDLMP---EY-QGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (584)
Q Consensus       336 ~~~~~~~l~~l~~~~~~~lp---~~-~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLvGDAA~~v~PltGgG~g~  410 (584)
                      ..+....+.+.+.++...++   +. .......+.       .+|++.. ...++..+|++|+|||||.++|++|+|+++
T Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~  303 (379)
T 3alj_A          231 ADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTA-------RYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGC  303 (379)
T ss_dssp             TCTTTTCSSCCHHHHHHHCGGGHHHHHHHHTCTTC-------CEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHH
T ss_pred             CCCCHHHHHHHHhcCCchhccHHHHHhhCCccceE-------EecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHH
Confidence            11111233334444444343   11 110001111       1111110 112455799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       411 ~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~  447 (584)
                      +++|+..|++.|...   +  +.  -+.|..|+...+
T Consensus       304 ai~da~~La~~L~~~---~--~~--~~~l~~Y~~~r~  333 (379)
T 3alj_A          304 AMVNAFSLSQDLEEG---S--SV--EDALVAWETRIR  333 (379)
T ss_dssp             HHHHHHHHHHHTTSS---S--CH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc---c--CH--HHHHHHHHHHHH
Confidence            999999888776431   1  11  233778887543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.92  E-value=3.7e-24  Score=228.22  Aligned_cols=150  Identities=17%  Similarity=0.129  Sum_probs=110.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc--ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~--r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+||.+.+...  ....+++..++.|..+|++. ...    .  .....+.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~----~--~~~~~~~~   77 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSI----S--VPSSSMEY   77 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGT----C--BCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccc----c--ccccceEE
Confidence            589999996 57999999999999999999998764222  23457888999999999875 111    0  11111111


Q ss_pred             c---CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          187 E---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       187 ~---~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .   .+..+.........+++..|.+.|.+.+  .|++++.+++|+++..++++++|++.+|++++|++||+|||.+|.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence            1   1111100000012356678888888776  5889999999999999888999999999999999999999999999


Q ss_pred             HhHhc
Q 007945          264 VKQIR  268 (584)
Q Consensus       264 ~rql~  268 (584)
                      |++++
T Consensus       156 r~~~~  160 (397)
T 2vou_A          156 RKRLL  160 (397)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99987

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.92  E-value=1.3e-23  Score=222.42  Aligned_cols=322  Identities=18%  Similarity=0.188  Sum_probs=172.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccc--cCCHHHHHHHHHcCCCcccc-cchhhhc-----c-c
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEW--NISRKELLELVESGILVEDD-IDEATAT-----K-F  179 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w--~Is~~~l~~L~~lGl~~~~e-le~~i~~-----~-~  179 (584)
                      ..|+|||| ++|+++|..|+++|++|+|+||.+.+... +.+  .+++..++.|.++|+.+... +......     . +
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            37999995 57999999999999999999998876532 223  36788889999988754211 1110000     0 0


Q ss_pred             CC-ce-eeecCC-Cccc--ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEE
Q 007945          180 NP-NR-CGFEGK-GEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLI  253 (584)
Q Consensus       180 ~~-~~-v~f~~~-~~l~--~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlV  253 (584)
                      +. .. +...+. .+..  ......+.+++..|.+.|.+.+   +..|..++++++++..++ .++|+++||++++|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlv  158 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVL  158 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEE
Confidence            00 00 110100 0000  0011124578888888886654   467999999999987655 58899999999999999


Q ss_pred             EEecCCChHHHhHhcCCCCCCcee--eEEEEeeeccC-CCcceeEEccCCcccccCCC-Cc--eEEEEEccCCCCC----
Q 007945          254 IDAMGNFSPVVKQIRSGRKPDGVC--LVVGSCARGFK-DNSTSDVIYSSSSVKKVGDS-EV--QLFWEAFPAGSGP----  323 (584)
Q Consensus       254 IdADG~~S~v~rql~~~~~~~~~~--~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~-~~--~~~W~~fP~~~g~----  323 (584)
                      |+|||.+|.+|+++....+.....  ...+....... .....+.+....+...++.. ..  -.+| ..|.....    
T Consensus       159 VgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (412)
T 4hb9_A          159 VGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMW-RAPVNIHVEASL  237 (412)
T ss_dssp             EECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEE-EEESCTTSCGGG
T ss_pred             EECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeee-ecCCceeEEEec
Confidence            999999999999987544332211  11111100000 00000000000000000000 01  1122 12211100    


Q ss_pred             ---CccEEEEEEcc-CCCCCC------ccHHHHHHHHHhh-Ccccccc----cCCceeEEEEEeeeeccccC-CCCCccC
Q 007945          324 ---LDRTTYMFTYI-DPQAGS------PKLEELLERYWDL-MPEYQGV----TLDNLEIQRVIYGIFPTYRD-SPLPAAF  387 (584)
Q Consensus       324 ---~~~~~~L~~~~-~~~~~~------~~l~~l~~~~~~~-lp~~~~~----~l~~~~~~~~~~g~~P~~~~-~~~~~~~  387 (584)
                         .+...+++... +..+..      ..+.+.+.+.+.. .|.++..    .....  ..     ++.+.. ...++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~~~~~~--~~-----~~~~~~~~~~~~~~  310 (412)
T 4hb9_A          238 AEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQSDMENI--SP-----LHLRSMPHLLPWKS  310 (412)
T ss_dssp             CCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTSCTTCC--EE-----EEEEECCCCCCCCC
T ss_pred             cCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHhccccee--cc-----chhccccccccccc
Confidence               01112222211 111111      1233333333321 1222211    11111  11     111111 1224667


Q ss_pred             CCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945          388 NRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL  446 (584)
Q Consensus       388 ~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~  446 (584)
                      +||+|+|||||.++|++|+|+|+++.|+..|++.|+.++.... +..  +.|..||...
T Consensus       311 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~-~~~--~aL~~Ye~~R  366 (412)
T 4hb9_A          311 STVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHE-ELV--KAISDYEQQM  366 (412)
T ss_dssp             CSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSS-CHH--HHHHHHHHHH
T ss_pred             cCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCc-CHH--HHHHHHHHHH
Confidence            9999999999999999999999999999999999999886532 211  2267787643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.91  E-value=2.5e-22  Score=225.35  Aligned_cols=329  Identities=15%  Similarity=0.109  Sum_probs=182.8

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhC------CCeEEEEcCCCCCCCc--ccccCCHHHHHHHHHcCCCccc--ccchhhh-
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFK------GLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVED--DIDEATA-  176 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~------GlrVlLIEr~~~~~~~--r~w~Is~~~l~~L~~lGl~~~~--ele~~i~-  176 (584)
                      .+|||||||| ++|+++|..|+++      |++|+||||++.++..  ....+++..++.|  ++-|...  .+...+. 
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~~~~~g~~~~~~~~~  111 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPDWKEKGAPLNTPVTE  111 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTTHHHHTCCCCEECCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHHHHhcCCceeeeech
Confidence            3599999996 5799999999998      9999999999876542  2223565666555  1111100  0000000 


Q ss_pred             --ccc-CC-ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EEEc------C
Q 007945          177 --TKF-NP-NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA------E  244 (584)
Q Consensus       177 --~~~-~~-~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~~~------~  244 (584)
                        ..+ .. ..+.+............++.+++..|.+.|.+++.+.|++++.+++|+++..++++ ++ |.+.      +
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~  191 (584)
T 2gmh_A          112 DRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKD  191 (584)
T ss_dssp             EEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTT
T ss_pred             hheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCC
Confidence              000 00 01111100000001112456899999999999999999999999999999887654 44 6664      2


Q ss_pred             C---------cEEEccEEEEecCCChHHHhHh----cCCC--CCCceeeEEEEeeeccC--CCccee--EEccCCccccc
Q 007945          245 G---------KILSSHLIIDAMGNFSPVVKQI----RSGR--KPDGVCLVVGSCARGFK--DNSTSD--VIYSSSSVKKV  305 (584)
Q Consensus       245 G---------~~i~ArlVIdADG~~S~v~rql----~~~~--~~~~~~~~vg~~a~g~~--~~~~~d--i~~~~~~~~~~  305 (584)
                      |         .+++||+||+|||.+|.+++++    +...  .+......+.... .++  ....+.  ..+.. +... 
T Consensus       192 G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~-~v~~~~~~~~~~~~~~g~-~~~~-  268 (584)
T 2gmh_A          192 GAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELW-VIDEKKWKPGRVDHTVGW-PLDR-  268 (584)
T ss_dssp             SCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEE-ECCGGGCCTTEEEEEEET-TSCT-
T ss_pred             CCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhhe-ecCcccccCCeEEEEEec-cccC-
Confidence            3         6899999999999999999886    3221  1111111111111 111  001111  11111 1110 


Q ss_pred             CCCCceEEEEEccCC--CCCCccEEEEEEccCCCCC-CccHHHHHHHHHhhCcccccccCCceeEEEEE-eeeeccccCC
Q 007945          306 GDSEVQLFWEAFPAG--SGPLDRTTYMFTYIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDS  381 (584)
Q Consensus       306 ~~~~~~~~W~~fP~~--~g~~~~~~~L~~~~~~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~  381 (584)
                       . ..+..| .||..  ++   .....+........ ..+..+.++++.. .|.+... ++..+..... ....+.....
T Consensus       269 -~-~~gg~~-~~~~~~~~~---~~~vg~~~~~~~~~~~~~~~~~l~~~~~-~p~i~~~-l~~~~~~~~~~~~~~~~~~~~  340 (584)
T 2gmh_A          269 -H-TYGGSF-LYHLNEGEP---LLALGFVVGLDYQNPYLSPFREFQRWKH-HPSIKPT-LEGGKRIAYGARALNEGGFQS  340 (584)
T ss_dssp             -T-SCEEEE-EEECCSSSC---EEEEEEEEETTCCCTTCCHHHHHHHHTT-STTTHHH-HTTCEEEEEEEEEEECCGGGG
T ss_pred             -C-cCCceE-EEEecCCCC---eEEEEEEEecCcccccCChHHHHHHHHh-ChHHHHH-hCCCeEEEecceEccCCCccc
Confidence             0 112334 35654  33   22222222211111 1133455555543 2333322 2222222111 1122322222


Q ss_pred             CCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCC-CChhhhHhhhchhhhhhHHH
Q 007945          382 PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYMPNLSASW  450 (584)
Q Consensus       382 ~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~-ls~~~l~~L~~Ye~~~~~~~  450 (584)
                      ..++..+|++|+|||||.++|++|+|+++++.|+..||+.|.++++.++ ....+...|..|+...+..|
T Consensus       341 ~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye~~r~~~~  410 (584)
T 2gmh_A          341 IPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSW  410 (584)
T ss_dssp             CCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSH
T ss_pred             CCccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHHHHHHHHHHhH
Confidence            2356779999999999999999999999999999999999999997653 22221001567887776655

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.91  E-value=4.3e-23  Score=220.83  Aligned_cols=309  Identities=18%  Similarity=0.256  Sum_probs=180.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||||||| ++|+++|..|+++|++ |+||||.+.++. .....+++..++.|..+|+++..  ... ....  ..+.+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l--~~~-~~~~--~~~~~   78 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL--AAT-AIPT--HELRY   78 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHH--HHH-SEEE--CEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHH--Hhh-CCCc--ceEEE
Confidence            589999996 5799999999999999 999999886543 23356788899999999986431  110 0000  01111


Q ss_pred             cC--CCccc-------cc-ccccceeCHHHHHHHHHHHHHh-CCC-EEEeCceEEEEEEeCCeEEEEEcC---C--cEEE
Q 007945          187 EG--KGEIW-------VE-DILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAE---G--KILS  249 (584)
Q Consensus       187 ~~--~~~l~-------~~-~~l~~~vd~~~L~~~L~~~a~~-~G~-~i~~~t~v~~v~~~~~gv~V~~~~---G--~~i~  249 (584)
                      ..  +..+.       .. ....+.+++..|.+.|.+++.+ .|+ +++.+++|+++.. +++++|++.+   |  .+++
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           79 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG  157 (410)
T ss_dssp             ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred             EcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence            10  00000       00 0112468899999999999987 474 8999999999988 7788888765   6  5799


Q ss_pred             ccEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeecc---CC--CcceeEEccCCcccccCCCCceEEEEEccCCC---
Q 007945          250 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGF---KD--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGS---  321 (584)
Q Consensus       250 ArlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~---~~--~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~---  321 (584)
                      |++||+|||.+|.+|+++..........-.  .+..++   +.  .....+++.  + .     ..+++| .||..+   
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~-~-----~~~~~~-~~p~~~~~~  226 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPDQRPLSHGGI--TMWRGVTEFDRFLDGKTMIVAN--D-E-----HWSRLV-AYPISARHA  226 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTTCCCCEEEEE--EEEEEEEEESCCTTSSEEEEEE--C-T-----TCCEEE-EEECCHHHH
T ss_pred             cCEEEECCCccchhHHHhcCCCCCCCcCCe--eEEEeecccccccCCCeEEEec--C-C-----CCcEEE-EEecCCccc
Confidence            999999999999999998643221111100  011111   10  001111111  1 0     124555 477642   


Q ss_pred             --CCCccEEEEEEccC--------CCC-C-CccHHHHHHHHHhhCc---ccccccCCceeEEEEEeeeeccccCCC-CCc
Q 007945          322 --GPLDRTTYMFTYID--------PQA-G-SPKLEELLERYWDLMP---EYQGVTLDNLEIQRVIYGIFPTYRDSP-LPA  385 (584)
Q Consensus       322 --g~~~~~~~L~~~~~--------~~~-~-~~~l~~l~~~~~~~lp---~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~  385 (584)
                        +. ....+.+....        ... . .....++.+.+-...+   ..... +....   .. ..+|+....+ .++
T Consensus       227 ~~g~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-i~~~~---~~-~~~~~~~~~~~~~~  300 (410)
T 3c96_A          227 AEGK-SLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDL-LTRNQ---LI-LQYPMVDRDPLPHW  300 (410)
T ss_dssp             TTTC-EEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHH-HHTCS---EE-EEEEEEECCCCSCC
T ss_pred             CCCC-cEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHH-HhcCc---cc-ceeecccCCCcccc
Confidence              21 11222221110        000 1 1134444443322111   01110 01111   01 1234332222 256


Q ss_pred             cCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          386 AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       386 ~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      ..+||+|+|||||.++|++|+|++++++|+..|++.|...   +  +  .-+.|+.|+...+.
T Consensus       301 ~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~--~--~~~~L~~Ye~~r~~  356 (410)
T 3c96_A          301 GRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---A--D--VAAALREYEEARRP  356 (410)
T ss_dssp             CBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---S--S--HHHHHHHHHHHHHH
T ss_pred             ccCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---C--C--HHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999988752   2  1  12347788875433

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.89  E-value=4.4e-22  Score=219.15  Aligned_cols=303  Identities=12%  Similarity=0.099  Sum_probs=168.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhh-----hc---
Q 007945          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEAT-----AT---  177 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i-----~~---  177 (584)
                      .+|||||||| +|+++|+.|++   +|++|+||||...+.......+++.....+..+|+...+-+..+.     ..   
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~~   81 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRFE   81 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccceec
Confidence            4799999975 69999999999   999999999987543222223444445566667765421011100     00   


Q ss_pred             ccCC-ce--e-eec----------------------C----------------------CCcc----c----------cc
Q 007945          178 KFNP-NR--C-GFE----------------------G----------------------KGEI----W----------VE  195 (584)
Q Consensus       178 ~~~~-~~--v-~f~----------------------~----------------------~~~l----~----------~~  195 (584)
                      .|.. ..  + .|.                      +                      ....    .          ..
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  161 (511)
T 2weu_A           82 NWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQR  161 (511)
T ss_dssp             SSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGCC
T ss_pred             CCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccCc
Confidence            0100 00  0 000                      0                      0000    0          00


Q ss_pred             --ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChHHHhH-hcCC
Q 007945          196 --DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVKQ-IRSG  270 (584)
Q Consensus       196 --~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~v~rq-l~~~  270 (584)
                        ....+.+++..|.+.|.+++.+.|++++.+ +|+++..++++  +.|++.+|++++|++||+|||.+|.++++ ++..
T Consensus       162 ~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~  240 (511)
T 2weu_A          162 AQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGR  240 (511)
T ss_dssp             SCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             CCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence              123456899999999999999999999999 99999886665  56778788899999999999999998653 4432


Q ss_pred             C------CCCceeeEEEEeeeccCCCc-ce-eEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCcc
Q 007945          271 R------KPDGVCLVVGSCARGFKDNS-TS-DVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK  342 (584)
Q Consensus       271 ~------~~~~~~~~vg~~a~g~~~~~-~~-di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~  342 (584)
                      .      .+...+..+. +  ..+... .. ....   ...     ..+++| .+|..++    ....+.+.........
T Consensus       241 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~---~~~-----~~g~~~-~~P~~~~----~~~g~~~~~~~~~~~~  304 (511)
T 2weu_A          241 FQSFSDVLPNNRAVALR-V--PRENDEDMRPYTTA---TAM-----SAGWMW-TIPLFKR----DGNGYVYSDEFISPEE  304 (511)
T ss_dssp             EEECTTTCCCCEEEEEE-E--ECSSGGGCCSSEEE---EEE-----TTEEEE-EEECSSE----EEEEEEECTTTSCHHH
T ss_pred             CccccccCcccceEEEE-e--ccCCCCCCCcceec---eec-----CCCcEE-EEECCCc----eEEEEEECCCCCCHHH
Confidence            1      1111111111 1  111000 00 0000   011     246888 6898752    2222222221111123


Q ss_pred             HHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 007945          343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  422 (584)
Q Consensus       343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i  422 (584)
                      ..+.+.+++...|..     .+....       +.+.....++..+|++++|||||.++|++|+|+++++.++..|++.|
T Consensus       305 ~~~~l~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l  372 (511)
T 2weu_A          305 AERELRSTVAPGRDD-----LEANHI-------QMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHF  372 (511)
T ss_dssp             HHHHHHHHHCTTCTT-----SCCEEE-------ECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCccccc-----ccceeE-------EeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHh
Confidence            334444444322211     122211       22111112345699999999999999999999999999988777655


Q ss_pred             HHHHhCCCCChhhhHhhhchhhhhhH
Q 007945          423 YEAVRGDFVDSYSLSLLNPYMPNLSA  448 (584)
Q Consensus       423 ~~AL~~~~ls~~~l~~L~~Ye~~~~~  448 (584)
                      .    .+.....   .++.|+..++.
T Consensus       373 ~----~~~~~~~---~l~~Y~~~~~~  391 (511)
T 2weu_A          373 P----GERWDPV---LISAYNERMAH  391 (511)
T ss_dssp             C----CTTCCHH---HHHHHHHHHHH
T ss_pred             c----cCCCCHH---HHHHHHHHHHH
Confidence            3    3322332   36677765443

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.88  E-value=1.1e-22  Score=216.79  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=106.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-c--cccCCH-HHHHHHHHcCCCcccccchhhhcccCCcee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-Q--EWNISR-KELLELVESGILVEDDIDEATATKFNPNRC  184 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r--~w~Is~-~~l~~L~~lGl~~~~ele~~i~~~~~~~~v  184 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+||++.+... .  .+.++. ...+.|..+|+++...  .. ...... .+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~--~~-~~~~~~-~~  101 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYY--DL-ALPMGV-NI  101 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHH--HH-CBCCCE-EE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHH--Hh-hcccce-EE
Confidence            589999996 57999999999999999999998765321 1  233443 3467788888864321  10 000000 00


Q ss_pred             eecCCCcc-cc--c---ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          185 GFEGKGEI-WV--E---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       185 ~f~~~~~l-~~--~---~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      ....+..+ ..  +   ......+++..|.+.|.+++.+  ++++.+++|+++..++++++|++.+|++++||+||+|||
T Consensus       102 ~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  179 (398)
T 2xdo_A          102 ADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANG  179 (398)
T ss_dssp             ECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSC
T ss_pred             ECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCC
Confidence            00000000 00  1   0112358899999999887743  689999999999988888999998998999999999999


Q ss_pred             CChHHHhHhc
Q 007945          259 NFSPVVKQIR  268 (584)
Q Consensus       259 ~~S~v~rql~  268 (584)
                      .+|.+|++++
T Consensus       180 ~~S~vR~~l~  189 (398)
T 2xdo_A          180 GMSKVRKFVT  189 (398)
T ss_dssp             TTCSCCTTTC
T ss_pred             cchhHHhhcc
Confidence            9999999875

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.88  E-value=9e-21  Score=211.10  Aligned_cols=305  Identities=13%  Similarity=0.102  Sum_probs=174.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCcccccchh-----hh---
Q 007945          110 TFDVIVCGG-TLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEA-----TA---  176 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~r~w~Is~~~l~-~L~~lGl~~~~ele~~-----i~---  176 (584)
                      .+||||||| ++|+++|+.|++   .|++|+|||+.+.+.......+++.... .+..+|+...+-+...     ..   
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~~~  104 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKF  104 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCCCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCccceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEeeeE
Confidence            589999996 579999999999   9999999999875543222345555666 7777787643111111     00   


Q ss_pred             cccCCc-------------e-eeecC-C-----------------------C-c----------cc---c---------c
Q 007945          177 TKFNPN-------------R-CGFEG-K-----------------------G-E----------IW---V---------E  195 (584)
Q Consensus       177 ~~~~~~-------------~-v~f~~-~-----------------------~-~----------l~---~---------~  195 (584)
                      ..|...             . ..++. +                       . .          +.   .         +
T Consensus       105 ~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (550)
T 2e4g_A          105 INWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKV  184 (550)
T ss_dssp             ESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSCBC
T ss_pred             eecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCCCC
Confidence            011110             0 00000 0                       0 0          00   0         0


Q ss_pred             ccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChHHH-hHhcCCC
Q 007945          196 DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVV-KQIRSGR  271 (584)
Q Consensus       196 ~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~v~-rql~~~~  271 (584)
                      ....+.+++..+.+.|.+++.+. |++++.+ +|+++..++++  +.|++.+|++++|++||+|||.+|.++ +.++.+.
T Consensus       185 ~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~  263 (550)
T 2e4g_A          185 TNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPF  263 (550)
T ss_dssp             SCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCE
T ss_pred             CCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCc
Confidence            12234589999999999999998 9999999 99999886655  567788888999999999999999984 4454321


Q ss_pred             ------CCCceeeEEEEeeecc-C-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCccH
Q 007945          272 ------KPDGVCLVVGSCARGF-K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKL  343 (584)
Q Consensus       272 ------~~~~~~~~vg~~a~g~-~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~l  343 (584)
                            .+...+..+....... + ........     ..     ..+++| .+|..+.    ....+.+..........
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~g~~~-~ipl~~~----~~~g~v~~~~~~~~~~~  328 (550)
T 2e4g_A          264 LDMSDHLLNDSAVATQVPHDDDANGVEPFTSAI-----AM-----KSGWTW-KIPMLGR----FGTGYVYSSRFATEDEA  328 (550)
T ss_dssp             EECTTTCCCCEEEEEEEECCHHHHCCCSSEEEE-----EC-----SSEEEE-EEECSSE----EEEEEEECTTTSCHHHH
T ss_pred             ccccccccccceEEEeecccCCcccCCCceeee-----ec-----CCceEE-EccCCCc----cceEEEEecCCCChHHH
Confidence                  0111111111000000 0 00000000     00     247788 6888642    22222332211111233


Q ss_pred             HHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHH
Q 007945          344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  423 (584)
Q Consensus       344 ~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~  423 (584)
                      .+.+.+++...|.+     .+....       +.......+...+|+++||||||.++|++|+|+++++.++..|++.| 
T Consensus       329 ~~~l~~~~~~~p~l-----~~~~~i-------~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L-  395 (550)
T 2e4g_A          329 VREFCEMWHLDPET-----QPLNRI-------RFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHF-  395 (550)
T ss_dssp             HHHHHHHTTCCTTT-----SCCEEE-------ECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhhCcCccc-----CCCceE-------EecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhc-
Confidence            44444444322211     222211       11111112356799999999999999999999999999988777544 


Q ss_pred             HHHhCCCCChhhhHhhhchhhhhhHH
Q 007945          424 EAVRGDFVDSYSLSLLNPYMPNLSAS  449 (584)
Q Consensus       424 ~AL~~~~ls~~~l~~L~~Ye~~~~~~  449 (584)
                         ..+.....   .+..|+...+..
T Consensus       396 ---~~~~~~~~---~l~~Y~~~~~~~  415 (550)
T 2e4g_A          396 ---PDKSLNPV---LTARFNREIETM  415 (550)
T ss_dssp             ---CCTTCCHH---HHHHHHHHHHHH
T ss_pred             ---cccCCCHH---HHHHHHHHHHHH
Confidence               33332333   366787754443

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.88  E-value=6.1e-22  Score=219.29  Aligned_cols=290  Identities=16%  Similarity=0.190  Sum_probs=167.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHh------------CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh
Q 007945          110 TFDVIVCGGT-LGIFIATALSF------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA  176 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr------------~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~  176 (584)
                      .+|||||||| +|+++|+.|++            .|++|+|||+...++......+++.....|..+|+.+..-+..+-.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~g~g~~~~p~~~~~l~~lGi~e~~~~~~~~~   86 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTLSKIGIDENDFIRQCDA   86 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCCCSCEECCTHHHHHHHHHTCCHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCcceeeechHhHHHHHHHcCCCHHHHHHHcCC
Confidence            5899999975 69999999999            9999999999876543333456677778888889875310111100


Q ss_pred             -----c---ccCC-------ce-e-eecCC-----Ccc---c-----------------------------------ccc
Q 007945          177 -----T---KFNP-------NR-C-GFEGK-----GEI---W-----------------------------------VED  196 (584)
Q Consensus       177 -----~---~~~~-------~~-v-~f~~~-----~~l---~-----------------------------------~~~  196 (584)
                           .   .|..       .. + .|..+     ..+   |                                   .+.
T Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~~~  166 (526)
T 2pyx_A           87 SFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQN  166 (526)
T ss_dssp             EEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCCSS
T ss_pred             EEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCCCC
Confidence                 0   1110       00 0 01000     000   0                                   001


Q ss_pred             cccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCCChHH-HhHhcCCCC
Q 007945          197 ILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGRK  272 (584)
Q Consensus       197 ~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~~S~v-~rql~~~~~  272 (584)
                      ...+.+++..|.+.|.+++.+ .|++++.+ +|+++..+++++  .|++.+|.+++|++||+|||.+|.+ ++.++....
T Consensus       167 ~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~  245 (526)
T 2pyx_A          167 NYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFL  245 (526)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEE
T ss_pred             CeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcc
Confidence            123568999999999999998 89999999 599998876553  5677777789999999999999998 555653220


Q ss_pred             ------CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCccHHHH
Q 007945          273 ------PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL  346 (584)
Q Consensus       273 ------~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~l~~l  346 (584)
                            +......+.......+..........   ..     ..+++| .+|..++   ... .+.+...........+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~g~~~-~~pl~~~---~~~-~~v~~~~~~~~~~~~~~  312 (526)
T 2pyx_A          246 SQKSVLFNDRALAIQVPYSDANSPIASCTHST---AQ-----PNGWIW-DIGLPTR---KGV-GYVYSSSHTNDIDAQKT  312 (526)
T ss_dssp             ECHHHHCCCEEEEEEEECSSTTCCCCSSEEEE---EE-----TTEEEE-EEECSSE---EEE-EEEECTTTCCHHHHHHH
T ss_pred             cccccccCccEEEEEeeccCCCCCCCCceeEE---ec-----CCCeEE-EeeCCCc---eEE-EEEecCCCCChHHHHHH
Confidence                  01111111110000000000000000   01     246888 5898753   222 22222211112234444


Q ss_pred             HHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 007945          347 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  422 (584)
Q Consensus       347 ~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i  422 (584)
                      +.+++.....    .+...+..     .++.......++..+|++++|||||.++|++|+|+++++.++..|++.|
T Consensus       313 l~~~l~~~~~----~l~~~~~~-----~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L  379 (526)
T 2pyx_A          313 LFNYLGVDGA----AADKLEPR-----QLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQL  379 (526)
T ss_dssp             HHHHHTCCHH----HHHHCCCE-----EEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCc----ccccCCce-----EEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHh
Confidence            5555432110    01111111     1222211123456799999999999999999999999999988777655

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.86  E-value=8.2e-21  Score=210.69  Aligned_cols=305  Identities=12%  Similarity=0.091  Sum_probs=173.0

Q ss_pred             CccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCcccccchhhh--------
Q 007945          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATA--------  176 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~r~w~Is~~~l~-~L~~lGl~~~~ele~~i~--------  176 (584)
                      .+|||||||| +|+++|+.|++   .|++|+|||+...+.......+++.... .+..+|+....-+.....        
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~~~   84 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAIKF   84 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCccc
Confidence            5899999965 79999999999   9999999999775543323345555666 677777653211111100        


Q ss_pred             cccCC------ceeeecCCCcc----------------------c------------------------ccccccceeCH
Q 007945          177 TKFNP------NRCGFEGKGEI----------------------W------------------------VEDILNLGVSP  204 (584)
Q Consensus       177 ~~~~~------~~v~f~~~~~l----------------------~------------------------~~~~l~~~vd~  204 (584)
                      ..|..      ....++....+                      .                        .+....+.+++
T Consensus        85 ~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  164 (538)
T 2aqj_A           85 VNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDA  164 (538)
T ss_dssp             ESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEEECH
T ss_pred             cCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEEEeH
Confidence            00100      00000000000                      0                        00122356899


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChHHHhH-hcCCCC------CCc
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVKQ-IRSGRK------PDG  275 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~v~rq-l~~~~~------~~~  275 (584)
                      ..|.+.|.+.+.+.|++++.+ +|+++..++++  +.|++.+|++++|++||+|||.+|.++++ ++....      +..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~  243 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCD  243 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccccc
Confidence            999999999999999999999 89999886654  46777788899999999999999998643 433210      011


Q ss_pred             eeeEEEEeeeccCCC-cceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCccHHHHHHHHHhhC
Q 007945          276 VCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM  354 (584)
Q Consensus       276 ~~~~vg~~a~g~~~~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~l~~l~~~~~~~l  354 (584)
                      .+..+ .+...-++. ........   ..     ..+++| .+|..++   ... .+.+...........+.+.+++...
T Consensus       244 ~~~~~-~~~~~~~~~~~~~~~~~~---~~-----~~g~~~-~~p~~~~---~~~-g~v~~~~~~~~~~~~~~l~~~~~~~  309 (538)
T 2aqj_A          244 SAVAS-AVPNDDARDGVEPYTSSI---AM-----NSGWTW-KIPMLGR---FGS-GYVFSSHFTSRDQATADFLKLWGLS  309 (538)
T ss_dssp             EEEEE-EEECCHHHHCCCSSEEEE---EC-----SSEEEE-EEEETTE---EEE-EEEECTTTSCHHHHHHHHHHHHTCC
T ss_pred             eEEEE-ecccCCcccCCCCceeee---ec-----CCceEE-EecCCCc---eEE-EEEEcCCCCChHHHHHHHHHHhcCC
Confidence            11110 000000000 00000000   11     246888 6898753   222 2222221111123344444444321


Q ss_pred             cccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChh
Q 007945          355 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY  434 (584)
Q Consensus       355 p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~  434 (584)
                      |      +.+...       ++.+.....++..+|++++|||||.++|++|+|+++++.++..|++.|    ..+.....
T Consensus       310 ~------~~~~~~-------~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L----~~~~~~~~  372 (538)
T 2aqj_A          310 D------NQPLNQ-------IKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHF----PDTSFDPR  372 (538)
T ss_dssp             T------TCCCEE-------EECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTC----CBTTCCHH
T ss_pred             C------CCCceE-------EeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHh----hccCCCHH
Confidence            1      112111       122211123456799999999999999999999999999988777544    33332333


Q ss_pred             hhHhhhchhhhhhHH
Q 007945          435 SLSLLNPYMPNLSAS  449 (584)
Q Consensus       435 ~l~~L~~Ye~~~~~~  449 (584)
                      .   +..|+..++..
T Consensus       373 ~---l~~Y~~~~~~~  384 (538)
T 2aqj_A          373 L---SDAFNAEIVHM  384 (538)
T ss_dssp             H---HHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHH
Confidence            3   56677654443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.81  E-value=7.6e-20  Score=193.87  Aligned_cols=294  Identities=11%  Similarity=0.060  Sum_probs=156.0

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCC-cccccchhhhcccCCceee
Q 007945          111 FDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGIL-VEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~-~~~ele~~i~~~~~~~~v~  185 (584)
                      .||+|||| ++|+++|..|+++  |++|+|+||++.++.. ....+++..+..+.+.+++ .. .+... ...+....+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~   78 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDA-PERLN-PQFLEDFKLV   78 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSC-GGGGC-CEEECCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhh-hHHHh-hccccceEEE
Confidence            38999996 5799999999998  9999999998765311 1111222222111111221 10 00000 0011111111


Q ss_pred             ecCCCccccc-ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          186 FEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       186 f~~~~~l~~~-~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      .. +..+... ....+.+++..|.+.|.+++.+.|++++.+++|+++...           .+++|++||+|||.+|. |
T Consensus        79 ~~-g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~-R  145 (381)
T 3c4a_A           79 HH-NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK-T  145 (381)
T ss_dssp             ES-SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG-T
T ss_pred             eC-CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch-H
Confidence            11 1111110 111246889999999999999999999999999887421           13689999999999999 8


Q ss_pred             hHhcC--CCCCCceeeEEEEeeeccCC-CcceeEEccCCcccccCCCCceEEE-EEccCCCCCCccEEEEEEccCC----
Q 007945          265 KQIRS--GRKPDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFW-EAFPAGSGPLDRTTYMFTYIDP----  336 (584)
Q Consensus       265 rql~~--~~~~~~~~~~vg~~a~g~~~-~~~~di~~~~~~~~~~~~~~~~~~W-~~fP~~~g~~~~~~~L~~~~~~----  336 (584)
                      +++..  +......  .......+... .+.....+..   .     ..+++| ..||.+++   ...+++...+.    
T Consensus       146 ~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~-----~~g~~~~~~~p~~~~---~~~~~~~~~~~~~~~  212 (381)
T 3c4a_A          146 AHFTEALVPQVDYG--RNKYIWYGTSQLFDQMNLVFRT---H-----GKDIFIAHAYKYSDT---MSTFIVECSEETYAR  212 (381)
T ss_dssp             CCSSGGGCCCCEEE--EEEEEEEEESSCCSSEEEEEEE---E-----TTEEEEEEEEECSSS---CEEEEEEECHHHHHH
T ss_pred             HhhhhhcCCCcccC--CccEEEEecCCCCCcceeeEee---C-----CCcEEEEEEEEecCC---eEEEEEECCcccccc
Confidence            77631  1111111  11111112211 0111111110   1     134443 46888755   23333322110    


Q ss_pred             -C-C--CCccHHHHHHHHHhh-CcccccccCCceeEEEEEeeeecccc-CCCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945          337 -Q-A--GSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (584)
Q Consensus       337 -~-~--~~~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~-~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~  410 (584)
                       . +  ......+.+.+++.. .|... . +....+      .+|.+. ....++..+|++|+|||||.+||++|+|+++
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-l-~~~~~~------~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~  284 (381)
T 3c4a_A          213 ARLGEMSEEASAEYVAKVFQAELGGHG-L-VSQPGL------GWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTM  284 (381)
T ss_dssp             TTSSSSCHHHHHHHHHHHTHHHHTTCC-C-BCCTTT------CSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHH
T ss_pred             CCcccCChHHHHHHHHHHhcccCCCch-h-hcCCCc------ceeeeccccCCCcccCCEEEEEccccccCCCccccHHH
Confidence             0 0  011233333333332 22211 1 111100      122211 1123566799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS  447 (584)
Q Consensus       411 ~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~  447 (584)
                      +++|+..|++.|..+   +  +.  -+.|+.|+...+
T Consensus       285 al~Da~~La~~L~~~---~--~~--~~aL~~Y~~~r~  314 (381)
T 3c4a_A          285 AVVVAQLLVKALCTE---D--GV--PAALKRFEERAL  314 (381)
T ss_dssp             HHHHHHHHHHHHHHS---S--SH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc---c--cH--HHHHHHHHHHHH
Confidence            999999999988764   1  11  233778887543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.72  E-value=1.3e-16  Score=172.07  Aligned_cols=288  Identities=14%  Similarity=0.134  Sum_probs=145.6

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc--cc---ccCCHHHHHHHHHcCC--Ccccc--cchhhhcc
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QE---WNISRKELLELVESGI--LVEDD--IDEATATK  178 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~--r~---w~Is~~~l~~L~~lGl--~~~~e--le~~i~~~  178 (584)
                      ..+||+||||| +|+++|+.|+++|++|+||||++.+...  +.   ..+....+..+..+|+  |....  +.......
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  100 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSEEFGYFGHYYYV  100 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHHHHCEEEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhhcccccceeEEE
Confidence            35899999965 6999999999999999999998743211  11   1234456666666654  32110  00000000


Q ss_pred             cCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCc-eEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGY-SVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t-~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      ..+..+.|.+  .+   ......+++..+...|.+++.+.|+++.... .+.++            +.....+++||+||
T Consensus       101 ~~~~~~~~~~--~~---~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l------------~~~~~~ad~VV~Ad  163 (430)
T 3ihm_A          101 GGPQPMRFYG--DL---KAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL------------EGLSEQYDLLVVCT  163 (430)
T ss_dssp             CSSSCEEEEE--EE---EEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH------------HHHHTTSSEEEECC
T ss_pred             CCCCccccch--hc---CCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh------------hhhcccCCEEEECC
Confidence            0111122221  11   1224568999999999999999999887532 01111            01113689999999


Q ss_pred             CCChHHHhHhcC-C-CCCCc--eeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccC--CCCCCccEEEEE
Q 007945          258 GNFSPVVKQIRS-G-RKPDG--VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPA--GSGPLDRTTYMF  331 (584)
Q Consensus       258 G~~S~v~rql~~-~-~~~~~--~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~--~~g~~~~~~~L~  331 (584)
                      |.+|.++..... . .+++.  ... ......++.......+.+..   .+    +.+.+| .+|.  .++.  ...+++
T Consensus       164 G~~S~~~~~~~~~~~~~~~~p~r~~-~~~~~~g~~~~~~~~~~~~~---~~----~~G~~~-~~p~~~~~g~--~~~~~~  232 (430)
T 3ihm_A          164 GKYALGKVFEKQSENSPFEKPQRAL-CVGLFKGIKEAPIRAVTMSF---SP----GHGELI-EIPTLSFNGM--STALVL  232 (430)
T ss_dssp             CCTTGGGGSCBCGGGCCCSSCSSEE-EEEEEESBCCCSSCCEEEEE---ET----TTEEEE-EEEEEETTEE--EEEEEE
T ss_pred             CCcchHHhccCCCCCCcccCCCeeE-EEEEEccCCCCCcCeeeeee---cC----CCcceE-EecccCCCcc--eEEEEE
Confidence            999987632211 0 11111  111 11122233211111111110   01    123344 3553  2121  222233


Q ss_pred             EccCCCC----------CCc-c-HHHHHHHHHhhCcccccccCCcee--E----EEE-EeeeeccccCCCCCccCCCEEE
Q 007945          332 TYIDPQA----------GSP-K-LEELLERYWDLMPEYQGVTLDNLE--I----QRV-IYGIFPTYRDSPLPAAFNRILQ  392 (584)
Q Consensus       332 ~~~~~~~----------~~~-~-l~~l~~~~~~~lp~~~~~~l~~~~--~----~~~-~~g~~P~~~~~~~~~~~~rvlL  392 (584)
                      ...+...          ..+ . ++++.+.+-...|..... +...+  .    ... ...++|.......++..+|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (430)
T 3ihm_A          233 ENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAER-IDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTII  311 (430)
T ss_dssp             EECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTT-BCTTTCEESSSTTSEEEECCCCEEBCSEEECTTSCEEE
T ss_pred             EecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHH-HhhchhccccCccceeecceeecccccccccCCCCEEE
Confidence            2221100          011 1 122222222333333221 11221  0    000 1123454332222456788888


Q ss_pred             -eCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHH
Q 007945          393 -FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  425 (584)
Q Consensus       393 -vGDAA~~v~PltGgG~g~~lr~~~~La~~i~~A  425 (584)
                       +|||||.++|++|+|++++++|+..|++.|..+
T Consensus       312 l~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~  345 (430)
T 3ihm_A          312 GLGDIQATVDPVLGQGANMASYAAWILGEEILAH  345 (430)
T ss_dssp             ECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EecCccccCCCchhhhHHHHHHHHHHHHHHHHhc
Confidence             999999999999999999999999999988764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.63  E-value=2.2e-15  Score=165.61  Aligned_cols=136  Identities=19%  Similarity=0.148  Sum_probs=103.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|+||||.+..+..+..+++...++.|..+|++...       ..|       ..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~-------~~~-------~~  157 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFY-------GRF-------CT  157 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHC-------TTT-------TC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccc-------ccc-------cc
Confidence            689999996 579999999999999999999998766555556778788888777753210       011       10


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEE--c-CC--cEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--A-EG--KILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~gv~V~~--~-~G--~~i~ArlVIdADG~~  260 (584)
                       ..+       ..+++..+.+.|.+.+.+.|++++.+++|+++..+   ++++.|++  . +|  .+++|++||+|||.+
T Consensus       158 -~~~-------~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          158 -GTL-------DHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             -TTC-------CEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred             -ccc-------ccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence             010       13567788999999999999999999999999864   34567776  3 55  479999999999999


Q ss_pred             hHHHhHh
Q 007945          261 SPVVKQI  267 (584)
Q Consensus       261 S~v~rql  267 (584)
                      |.+++..
T Consensus       230 S~~r~~~  236 (497)
T 2bry_A          230 FVPEGFT  236 (497)
T ss_dssp             CCCTTCE
T ss_pred             ccccccc
Confidence            9998654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.48  E-value=2.2e-12  Score=135.51  Aligned_cols=69  Identities=23%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|. +.+.++.
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~  228 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGL  228 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTC
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCC
Confidence            3478899999999999999999999999999988877788877666 8999999999999997 7777653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.43  E-value=2.5e-11  Score=127.44  Aligned_cols=69  Identities=12%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      .+++..+.+.|.+.+++.|++++.+++|+++..++++++ |++.+| +++|+.||.|+|.+|. +.+.++..
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCC
T ss_pred             eECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCC
Confidence            478999999999999999999999999999998888887 887666 8999999999999995 66666543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.40  E-value=2.9e-11  Score=125.43  Aligned_cols=69  Identities=17%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC--cEEEccEEEEecCCChH-HHhHh-cC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG--KILSSHLIIDAMGNFSP-VVKQI-RS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G--~~i~ArlVIdADG~~S~-v~rql-~~  269 (584)
                      .+++..+.+.|.+.+++.|++++.+++|+++..++++ +.|++.+|  .+++|+.||.|+|.+|. +.+++ +.
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~  219 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGI  219 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETS
T ss_pred             EECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCC
Confidence            4789999999999999999999999999999988776 88888777  48999999999999994 66666 53

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.40  E-value=2.4e-11  Score=128.42  Aligned_cols=70  Identities=9%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCCh-HHHhHhcCC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRSG  270 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S-~v~rql~~~  270 (584)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++. +.|++.+| +++|+.||.|+|.+| .+++.++..
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~  240 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFE  240 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCC
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCC
Confidence            34788899999999999999999999999999887665 45777667 799999999999999 577776543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.37  E-value=9.8e-11  Score=128.57  Aligned_cols=202  Identities=14%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEccEEEEecCCChH-HHhH-hcCCCCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQ-IRSGRKP  273 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~--~i~ArlVIdADG~~S~-v~rq-l~~~~~~  273 (584)
                      .+++..+...|.+.+.+.|++++.+++|+++..+++.+.|++.   +|+  +++|+.||.|+|.+|. +.++ ++.... 
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~-  223 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSP-  223 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCS-
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcc-
Confidence            4799999999999999999999999999999988776667763   465  7999999999999997 4444 543211 


Q ss_pred             CceeeEEEEee--eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCC---CC----CC-ccH
Q 007945          274 DGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QA----GS-PKL  343 (584)
Q Consensus       274 ~~~~~~vg~~a--~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~---~~----~~-~~l  343 (584)
                      ..+.++-|+..  ........ .+++.   .+     ....+| .+|..++    ...+.+.+..   .+    .. ...
T Consensus       224 ~~i~p~rG~~~~~~~~~~~~~-~~~~~---~~-----dg~~~~-~~P~~~g----~~~iG~t~~~~~~~~~~~~~~~~~~  289 (501)
T 2qcu_A          224 YGIRLIKGSHIVVPRVHTQKQ-AYILQ---NE-----DKRIVF-VIPWMDE----FSIIGTTDVEYKGDPKAVKIEESEI  289 (501)
T ss_dssp             SCBCCEEEEEEEEECSSSCSC-EEEEE---CT-----TSCEEE-EEEETTT----EEEEECCCEECCSCGGGCCCCHHHH
T ss_pred             cccccceeEEEEECCCCCCce-EEEee---cC-----CCCEEE-EEEcCCC----cEEEcCCCCCCCCCcCCCCCCHHHH
Confidence            11222222211  11001111 11111   01     123445 5776644    2222221110   11    01 134


Q ss_pred             HHHHHHHHhhCc-ccccccCCceeEEEEEeeeeccccCC-CC--CccCCCEEE--eCCCCCCcCCCCCCchhhHHHHHHH
Q 007945          344 EELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDS-PL--PAAFNRILQ--FGDASGIQSPVSFGGFGSLTRHLGR  417 (584)
Q Consensus       344 ~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~-~~--~~~~~rvlL--vGDAA~~v~PltGgG~g~~lr~~~~  417 (584)
                      +.+++...+.+| .+.     ..++.+.-.|..|..... |.  +...+.++.  .++..+.+-.++|+|+...    ..
T Consensus       290 ~~l~~~~~~~~p~~l~-----~~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~----~~  360 (501)
T 2qcu_A          290 NYLLNVYNTHFKKQLS-----RDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTY----RK  360 (501)
T ss_dssp             HHHHHHHHHHBSSCCC-----GGGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGH----HH
T ss_pred             HHHHHHHHHhcCCCCC-----cccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccch----HH
Confidence            445554445666 333     223344445777876432 11  234466776  6766666667788775443    33


Q ss_pred             HHHHHHHHH
Q 007945          418 LSTGVYEAV  426 (584)
Q Consensus       418 La~~i~~AL  426 (584)
                      +|+.+...+
T Consensus       361 ~Ae~~~~~~  369 (501)
T 2qcu_A          361 LAEHALEKL  369 (501)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.29  E-value=3.9e-10  Score=118.35  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhc
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      .+++..+.+.|.+.+++.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|. +...++
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             EEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence            477889999999999999999999999999998888888887555 7999999999999986 444443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.24  E-value=3.3e-10  Score=129.22  Aligned_cols=62  Identities=13%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~-~i~ArlVIdADG~~S~  262 (584)
                      .+++..+.+.|.+.+++.|++++.+++|+++..+++++.|++.+|. +++|+.||.|+|.+|.
T Consensus       408 ~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          408 WLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            4789999999999999999999999999999998888989888877 8999999999999986

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.23  E-value=1.2e-10  Score=123.08  Aligned_cols=68  Identities=9%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh-HHHhHhcC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S-~v~rql~~  269 (584)
                      .+++..+.+.|.+.+.+.|++++.+++|+++..++++++|++.++ +++|+.||.|+|.+| .++++++.
T Consensus       149 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~  217 (397)
T 2oln_A          149 TIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGA  217 (397)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTC
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCC
Confidence            478888999999999999999999999999998888888877555 799999999999995 47777654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.21  E-value=1.2e-10  Score=125.28  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=89.0

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc-------c--cc--CCHH--------H-HHHHHHcCCCc
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-------E--WN--ISRK--------E-LLELVESGILV  167 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r-------~--w~--Is~~--------~-l~~L~~lGl~~  167 (584)
                      .+||||||||| +|+++|..|+++|++|+||||.+.++..-       +  .+  ....        . ...+....   
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~---  102 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYR---  102 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSC---
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcC---
Confidence            36999999965 69999999999999999999998654210       0  00  0000        0 00000000   


Q ss_pred             ccccchhhhcccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcE
Q 007945          168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI  247 (584)
Q Consensus       168 ~~ele~~i~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~  247 (584)
                      ..+...... .. ...........++      ...++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++.+| +
T Consensus       103 ~~~~~~~~~-~~-Gi~~~~~~~g~~~------~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~  173 (417)
T 3v76_A          103 PQDFVALVE-RH-GIGWHEKTLGQLF------CDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T  173 (417)
T ss_dssp             HHHHHHHHH-HT-TCCEEECSTTEEE------ESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred             HHHHHHHHH-Hc-CCCcEEeeCCEEe------eCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence            000000000 00 0000000000110      1245678889999999999999999999999999988999998777 8


Q ss_pred             EEccEEEEecCCCh
Q 007945          248 LSSHLIIDAMGNFS  261 (584)
Q Consensus       248 i~ArlVIdADG~~S  261 (584)
                      ++|+.||.|+|..|
T Consensus       174 i~ad~VIlAtG~~S  187 (417)
T 3v76_A          174 VDAASLVVASGGKS  187 (417)
T ss_dssp             EEESEEEECCCCSS
T ss_pred             EEeeEEEECCCCcc
Confidence            99999999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.21  E-value=1.4e-10  Score=124.27  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCc---eEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGY---SVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t---~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+++..+.+.|.+.+++.|++++.++   +|+++..++++++ |++.+|++++|+.||.|+|.+|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            357888999999999999999999999   9999999888888 99988889999999999999986

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.20  E-value=1.8e-10  Score=127.73  Aligned_cols=60  Identities=22%  Similarity=0.319  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ....+.+.|.+.+.+.|++++.+++|+++..+++.+. |++.+|++++|++||.|+|+.|.
T Consensus       218 ~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             hHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            3456788899999999999999999999988877655 88888999999999999999995

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.19  E-value=5.4e-09  Score=116.43  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEccEEEEecCCChH-HHhHhcC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~---G--~~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      .+|+..+...|.+.+.+.|++++.+++|+++..+++++. |++.+   |  .+++|+.||.|+|.+|. +++.++.
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~  241 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRS  241 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCC
Confidence            588999999999999999999999999999999888653 66543   3  47999999999999995 6665543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.18  E-value=1.7e-08  Score=97.12  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ++||+|||| |+|+++|..|+++|++|+|+||++.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            589999995 679999999999999999999998764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.17  E-value=2.4e-10  Score=123.61  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=95.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc-----c-ccCCH-HHHHHH-HHcCCCcccccchhhhcccC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ-----E-WNISR-KELLEL-VESGILVEDDIDEATATKFN  180 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r-----~-w~Is~-~~l~~L-~~lGl~~~~ele~~i~~~~~  180 (584)
                      +|||||||| ++|+++|..|+++|++|+||||.+.++..-     . .++.. ...+.+ ..++.... -+...+ ..++
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~  103 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR-FLYSAF-SIFN  103 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG-GGHHHH-HHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChH-HHHHHH-HhcC
Confidence            699999996 579999999999999999999987654210     0 00000 001111 11110000 000000 0010


Q ss_pred             Cc-eeeecC--CCcccccccccce----eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccE
Q 007945          181 PN-RCGFEG--KGEIWVEDILNLG----VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL  252 (584)
Q Consensus       181 ~~-~v~f~~--~~~l~~~~~l~~~----vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~Arl  252 (584)
                      .. .+.+..  +.++... ..+..    -+...+.+.|.+++.+.|++++.+++|+++..+++. +.|++.+|++++|+.
T Consensus       104 ~~~~~~~~~~~G~~~~~~-~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~  182 (447)
T 2i0z_A          104 NEDIITFFENLGVKLKEE-DHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH  182 (447)
T ss_dssp             HHHHHHHHHHTTCCEEEC-GGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred             HHHHHHHHHhcCCceEEe-eCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence            00 000000  0000000 00111    135678889999999999999999999999888777 668888887899999


Q ss_pred             EEEecCCCh-----------HHHhHhcC
Q 007945          253 IIDAMGNFS-----------PVVKQIRS  269 (584)
Q Consensus       253 VIdADG~~S-----------~v~rql~~  269 (584)
                      ||.|+|..|           .++++++.
T Consensus       183 VVlAtGg~s~~~~g~tG~g~~la~~~G~  210 (447)
T 2i0z_A          183 VVIAVGGKSVPQTGSTGDGYAWAEKAGH  210 (447)
T ss_dssp             EEECCCCSSSGGGSCSSHHHHHHHHTTC
T ss_pred             EEECCCCCcCCCCCCCcHHHHHHHHCCC
Confidence            999999999           88888764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.14  E-value=2.3e-10  Score=119.51  Aligned_cols=68  Identities=10%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~  269 (584)
                      .+++..+...|.+.+++.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|. +.+.++.
T Consensus       150 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~  218 (381)
T 3nyc_A          150 DIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGV  218 (381)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTC
T ss_pred             eECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCC
Confidence            489999999999999999999999999999999988888888766 8999999999999995 6666654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.13  E-value=5.2e-10  Score=127.26  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+++..+.+.|.+.+++.|++++.+++|+++..+++++.|++.+|.+++|+.||.|+|.+|.
T Consensus       412 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             eeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            347899999999999999999999999999999999999999888888999999999999987

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.12  E-value=4.9e-10  Score=117.03  Aligned_cols=61  Identities=13%  Similarity=0.086  Sum_probs=54.7

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|.
T Consensus       145 ~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          145 FLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence            478889999999999999999999999999998888888887666 5999999999999885

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.10  E-value=3.1e-10  Score=118.48  Aligned_cols=131  Identities=21%  Similarity=0.309  Sum_probs=85.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATAT  177 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~  177 (584)
                      +|||||||| ++|+++|..|+++  |++|+||||...++.. .|.         +.....+.|.++|+.-.         
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------  148 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG-AWLGGQLFSAMVMRKPADVFLDEVGVPYE---------  148 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT-TTCCBTTCCCEEEETTTHHHHHHHTCCCE---------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc-cccCCccchhhhcchHHHHHHHHcCCccc---------
Confidence            599999996 5799999999987  9999999999765411 110         11122334444443210         


Q ss_pred             ccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC--------------------
Q 007945          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN--------------------  236 (584)
Q Consensus       178 ~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~--------------------  236 (584)
                                ....++      ...+...+.+.|.+++.+ .|++++.++.++++..+++                    
T Consensus       149 ----------~~G~~~------~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r  212 (344)
T 3jsk_A          149 ----------DEGDYV------VVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR  212 (344)
T ss_dssp             ----------ECSSEE------EESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEE
T ss_pred             ----------ccCCeE------EEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence                      000010      111245567888888888 4899999999999987663                    


Q ss_pred             --eEEEEE----c--------CCcEEEccEEEEecCCChHHHhH
Q 007945          237 --AAVLLL----A--------EGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       237 --gv~V~~----~--------~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                        ++++..    .        +..+|+|++||+|+|+.|++++.
T Consensus       213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~  256 (344)
T 3jsk_A          213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAF  256 (344)
T ss_dssp             EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCH
T ss_pred             EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHH
Confidence              222221    1        22479999999999999996543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.08  E-value=1.3e-09  Score=102.46  Aligned_cols=115  Identities=18%  Similarity=0.231  Sum_probs=87.7

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      |||+|||| ++|+.+|..|++.|.+|+|||+.+..- .+.+                   .+.     .+       .+ 
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~~-------------------~~~-----~~-------~~-   48 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGVS-------------------RVP-----NY-------PG-   48 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTCS-------------------CCC-----CS-------TT-
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCch-------------------hhh-----cc-------CC-
Confidence            89999996 579999999999999999999886210 0000                   000     00       00 


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhHhc
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~  268 (584)
                        +  +    ..++...+.+.+.+.+++.|++++.+ ++++++.+++++.|++++| ++.|+.||.|+|..|.+++.++
T Consensus        49 --~--~----~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g  117 (180)
T 2ywl_A           49 --L--L----DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLG  117 (180)
T ss_dssp             --C--T----TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHT
T ss_pred             --C--c----CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCC
Confidence              0  0    01445678888999999999999999 9999988777888888778 8999999999999998877664

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.07  E-value=1.5e-09  Score=115.93  Aligned_cols=149  Identities=19%  Similarity=0.281  Sum_probs=90.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCCHHHHHHHHHcCCCc-ccc-cchhhhcccC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNISRKELLELVESGILV-EDD-IDEATATKFN  180 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r------~w~Is~~~l~~L~~lGl~~-~~e-le~~i~~~~~  180 (584)
                      +|||||||| ++|+++|..|+++|++|+||||++.++..-      ..++....+. ..  ..+. ..+ +... ...|.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~-~~--~~~~~~~~~~~~~-l~~~~   79 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVT-PA--HYLSQNPHFVKSA-LARYT   79 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCC-GG--GEECSCTTSTHHH-HHHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccC-HH--HhccCCHHHHHHH-HHhCC
Confidence            589999996 579999999999999999999987543110      0000000000 00  0000 000 0000 00000


Q ss_pred             C---------ceeeec--CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe----CCeEEEEEcCC
Q 007945          181 P---------NRCGFE--GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEG  245 (584)
Q Consensus       181 ~---------~~v~f~--~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~----~~gv~V~~~~G  245 (584)
                      .         ..+.+.  ....++ |.    . ++..+.+.|.+.+.+.|++++.+++|+++..+    ++++.|++.++
T Consensus        80 ~~~~~~~~~~~Gi~~~~~~~g~~~-p~----~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g  153 (401)
T 2gqf_A           80 NWDFISLVAEQGITYHEKELGQLF-CD----E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST  153 (401)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEE-ET----T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE
T ss_pred             HHHHHHHHHhCCCceEECcCCEEc-cC----C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC
Confidence            0         000010  000010 00    1 46678889999999999999999999999876    56688887666


Q ss_pred             cEEEccEEEEecCCCh-----------HHHhHhcC
Q 007945          246 KILSSHLIIDAMGNFS-----------PVVKQIRS  269 (584)
Q Consensus       246 ~~i~ArlVIdADG~~S-----------~v~rql~~  269 (584)
                       +++|+.||.|+|..|           .++++++.
T Consensus       154 -~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~  187 (401)
T 2gqf_A          154 -QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (401)
T ss_dssp             -EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             -EEECCEEEECCCCccCCCCCCChHHHHHHHHCCC
Confidence             799999999999999           56676653

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.06  E-value=8.1e-10  Score=112.22  Aligned_cols=131  Identities=17%  Similarity=0.319  Sum_probs=86.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhcc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK  178 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~  178 (584)
                      +|||||||| ++|+++|..|+++ |++|+||||.+.++.. .|.         +.....+.|.++|+.            
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~------------  105 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVA------------  105 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCC------------
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCC------------
Confidence            589999996 5799999999997 9999999999765421 111         000111222222211            


Q ss_pred             cCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEc---------CC--
Q 007945          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---------EG--  245 (584)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv-~V~~~---------~G--  245 (584)
                             |.....      +....+...+...|.+++.+ .|++++.+++|+++..+++.+ .|.+.         +|  
T Consensus       106 -------~~~~~~------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~  172 (284)
T 1rp0_A          106 -------YDEQDT------YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSC  172 (284)
T ss_dssp             -------CEECSS------EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSC
T ss_pred             -------cccCCC------EEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcccc
Confidence                   100000      00112566777888888876 699999999999999887754 23332         22  


Q ss_pred             ---cEEEccEEEEecCCChHHHhH
Q 007945          246 ---KILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       246 ---~~i~ArlVIdADG~~S~v~rq  266 (584)
                         .+++|+.||.|+|..|.++..
T Consensus       173 g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          173 MDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             CCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             CceEEEECCEEEECCCCchHHHHH
Confidence               579999999999999987653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.01  E-value=6.3e-10  Score=118.56  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEE---------EEEEeCCeEEEEEcCCcEEEccEEEEecCCCh-HHHh-HhcC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVS---------SICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVK-QIRS  269 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~---------~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S-~v~r-ql~~  269 (584)
                      .+++..+.+.|.+.+.+.|++++.+++|+         ++..+++.+.|++.+| +++|+.||.|+|.+| .+++ +++.
T Consensus       168 ~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~  246 (405)
T 3c4n_A          168 TYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL  246 (405)
T ss_dssp             EECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence            47899999999999999999999999999         8877666676666555 899999999999999 6877 7764


Q ss_pred             C
Q 007945          270 G  270 (584)
Q Consensus       270 ~  270 (584)
                      .
T Consensus       247 ~  247 (405)
T 3c4n_A          247 H  247 (405)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.98  E-value=4.2e-09  Score=108.43  Aligned_cols=129  Identities=14%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      +|||+||||| +|+++|..|+++|++|+|||+.+.++.  .|.-.      ...+.+...        ..+    ..+.+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg--~~~~~------~~~~~~~~~--------~~~----~~~~~   62 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG--AWQHA------WHSLHLFSP--------AGW----SSIPG   62 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSG--GGGGS------CTTCBCSSC--------GGG----SCCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC--cccCC------CCCcEecCc--------hhh----hhCCC
Confidence            5899999965 799999999999999999999976542  12100      000000000        000    00110


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                         ...+.......++..+.+.+.+.+.+.|++++.+++|++++.+++.+. |++.+| +++++.||.|+|..|.
T Consensus        63 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           63 ---WPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             ---SCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             ---CCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence               000000011134677888899999999999999999999999999988 888777 8999999999998763

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.97  E-value=1.5e-07  Score=104.95  Aligned_cols=67  Identities=13%  Similarity=0.114  Sum_probs=54.2

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChH-HHhHh
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQI  267 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~-v~rql  267 (584)
                      .+++.++...+.+.+.+.|++++.+++|+++..+++.+. |++.   +|+  +++|+.||.|+|.+|. +.+..
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~  257 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLN  257 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTC
T ss_pred             eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhh
Confidence            478888989999999999999999999999998877643 5543   333  7999999999999996 44433

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.97  E-value=4.1e-09  Score=117.42  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE-EEE--cCCc--EEEccEEEEecCCChHHHh
Q 007945          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLL--AEGK--ILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~-V~~--~~G~--~i~ArlVIdADG~~S~v~r  265 (584)
                      ++...+.+.|.+++.+.|++++.+++|+++..++ +.++ |.+  .+|+  +++|+.||.|+|..|..++
T Consensus       247 ~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~  316 (566)
T 1qo8_A          247 SSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKE  316 (566)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHH
Confidence            3467788999999999999999999999998877 5433 333  3665  6999999999999997644

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.96  E-value=5.4e-09  Score=102.83  Aligned_cols=125  Identities=14%  Similarity=0.053  Sum_probs=85.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC-CCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~-~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| ++|+.+|..|+++|++|+|||++.. .+   .+ ..+       ..+-+..   .. +..++.       
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G---~~-~~~-------~~~~~~~---~~-~~~~~~-------   60 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM---MP-FLP-------PKPPFPP---GS-LLERAY-------   60 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT---CC-SSC-------CCSCCCT---TC-HHHHHC-------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC---cc-cCc-------cccccch---hh-HHhhhc-------
Confidence            589999996 5799999999999999999999842 11   00 000       0000000   00 000000       


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChHHHh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~v~r  265 (584)
                      .        ..+  -++..+.+.|.+.+.+. |++++ +++|+++..+++.+ .|.+.+|++++|+.||.|+|.+|..+.
T Consensus        61 d--------~~g--~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~  129 (232)
T 2cul_A           61 D--------PKD--ERVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARL  129 (232)
T ss_dssp             C--------TTC--CCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEE
T ss_pred             c--------CCC--CCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhce
Confidence            0        000  15778889999999887 88888 57999998888775 477778889999999999999986654


Q ss_pred             Hh
Q 007945          266 QI  267 (584)
Q Consensus       266 ql  267 (584)
                      .+
T Consensus       130 ~~  131 (232)
T 2cul_A          130 FL  131 (232)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.94  E-value=3.4e-09  Score=109.88  Aligned_cols=132  Identities=22%  Similarity=0.317  Sum_probs=85.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhc
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATAT  177 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~  177 (584)
                      +|||+|||| ++|+++|..|+++  |++|+|+|+.+.++.. .|.         +.......|.++|+.-          
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~----------  133 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG-SWLGGQLFSAMVMRKPAHLFLQELEIPY----------  133 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT-TTCCGGGCCCEEEETTTHHHHHHTTCCC----------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc-ccccCcccchhhhhhHHHHHHHhhCccc----------
Confidence            589999996 5799999999998  9999999998876421 111         1111223333333211          


Q ss_pred             ccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC--C----e---EEEEEc----
Q 007945          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--N----A---AVLLLA----  243 (584)
Q Consensus       178 ~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~--~----g---v~V~~~----  243 (584)
                               .....+      ....+...+.+.|.+++.+. |++++.+++|+++..++  +    .   +++...    
T Consensus       134 ---------~~~g~~------~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~  198 (326)
T 2gjc_A          134 ---------EDEGDY------VVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ  198 (326)
T ss_dssp             ---------EECSSE------EEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred             ---------ccCCCe------EEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence                     000011      11124456788888888885 88999999999998773  2    2   233211    


Q ss_pred             --------CCcEEEc---------------cEEEEecCCChHHHhHh
Q 007945          244 --------EGKILSS---------------HLIIDAMGNFSPVVKQI  267 (584)
Q Consensus       244 --------~G~~i~A---------------rlVIdADG~~S~v~rql  267 (584)
                              ++.+|.|               ++||+|+|+.|++.+.+
T Consensus       199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             cccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                    3357999               99999999999888654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.93  E-value=8e-09  Score=105.01  Aligned_cols=112  Identities=19%  Similarity=0.273  Sum_probs=83.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      |||+|||| ++|+++|..|+++|+ +|+|||+....+.   |..+          .     .+     ..       +.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~---~~~~----------~-----~~-----~~-------~~~   51 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ---ITGS----------S-----EI-----EN-------YPG   51 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCG---GGGC----------S-----CB-----CC-------STT
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcc---cccc----------c-----cc-----cc-------CCC
Confidence            89999996 579999999999999 9999999643321   1000          0     00     00       000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                               +...+++..+.+.+.+.+.+.|++++. +++++++.+++.++|++.+|++++++.||.|+|..+.
T Consensus        52 ---------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  115 (311)
T 2q0l_A           52 ---------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK  115 (311)
T ss_dssp             ---------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             ---------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence                     011256778888888888888999887 7899999888888888888889999999999998764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.90  E-value=1.3e-08  Score=113.48  Aligned_cols=61  Identities=8%  Similarity=0.030  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE---EEEEcCCc--EEEccEEEEecCCChHH
Q 007945          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv---~V~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ....+.+.|.+++.+.|++++.+++|+++..++ +.+   ++...+|+  +|+|+.||.|+|..|..
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n  319 (571)
T 1y0p_A          253 VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN  319 (571)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccC
Confidence            356788999999999999999999999998876 443   33333565  79999999999998863

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.89  E-value=8.2e-09  Score=115.93  Aligned_cols=141  Identities=19%  Similarity=0.214  Sum_probs=90.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCcccccchhhhcccCCc
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN  182 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~----w~Is~~-~l~~L~~lGl~~~~ele~~i~~~~~~~  182 (584)
                      +||||||||| +|+++|+.||+.|++|+|||++. ..+...+    -++... -++.+..+|-.    +.....    ..
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~----~~~~~d----~~   99 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGL----MAKAID----QA   99 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCS----HHHHHH----HH
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccH----HHHHhh----hc
Confidence            6999999965 79999999999999999999984 2221111    112222 23344444321    000000    00


Q ss_pred             eeeecC----CCc-ccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEE
Q 007945          183 RCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIID  255 (584)
Q Consensus       183 ~v~f~~----~~~-l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVId  255 (584)
                      .+.|..    ..+ .+   .....+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+ .|.+.+|.+++|+.||.
T Consensus       100 gi~f~~l~~~kgpav~---~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          100 GIQFRILNASKGPAVR---ATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             EEEEEEESTTSCGGGC---EEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEE
T ss_pred             ccchhhhhcccCcccc---cchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence            111110    111 11   112358888899999999988 588885 57999998877765 47777888999999999


Q ss_pred             ecCCChH
Q 007945          256 AMGNFSP  262 (584)
Q Consensus       256 ADG~~S~  262 (584)
                      |+|.+|.
T Consensus       176 ATGt~s~  182 (651)
T 3ces_A          176 TVGTFLD  182 (651)
T ss_dssp             CCSTTTC
T ss_pred             cCCCCcc
Confidence            9999863

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.89  E-value=9.4e-09  Score=107.07  Aligned_cols=119  Identities=17%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .|||+|||| ++|+++|..|+++|++|+|||+.+..+.         .+..+                  +....+  ..
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg---------~~~~~------------------~~~~~~--~~   64 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG---------QLAAL------------------YPEKHI--YD   64 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH---------HHHHT------------------CTTSEE--CC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC---------ccccc------------------CCCccc--cc
Confidence            699999996 5799999999999999999999865431         01000                  000000  00


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      .     +..  ..+++..+.+.+.+.+.+.|++++.+++|++++.+++ .+.|++.+|++++++.||.|+|..|...
T Consensus        65 ~-----~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~  134 (360)
T 3ab1_A           65 V-----AGF--PEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEP  134 (360)
T ss_dssp             S-----TTC--SSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCB
T ss_pred             C-----CCC--CCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCC
Confidence            0     000  0145667788888888888999999999999988765 6788888888999999999999987443

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.88  E-value=8.3e-09  Score=120.06  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=58.0

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH-HhHhcC
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQIRS  269 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v-~rql~~  269 (584)
                      ..+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++|+.||.|+|.+|.. .+.++.
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~  216 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM  216 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCC
Confidence            3478999999999999999999999999999998888764 777666 79999999999999974 444443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.88  E-value=1.1e-08  Score=114.95  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=90.8

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCccc-c---cCCH-HHHHHHHHcCCCcccccchhhhcccCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE-W---NISR-KELLELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~-~~~~r~-w---~Is~-~~l~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      .+||||||||| +|+++|..||++|++|+|||+... .+...+ +   ++.. .-++.+..++-..    .....    .
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~----~~~~d----~   91 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEM----GKAID----A   91 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSH----HHHHH----H
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHH----HHHHH----h
Confidence            36999999965 799999999999999999999842 221111 1   1111 1223333332110    00000    0


Q ss_pred             ceeeec----CCCc-ccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEE
Q 007945          182 NRCGFE----GKGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLII  254 (584)
Q Consensus       182 ~~v~f~----~~~~-l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVI  254 (584)
                      ..+.|.    ...+ .+   .....+|+..+.+.+.+.+.+. |++++. ..|+++..+++.+. |.+.+|.+++|+.||
T Consensus        92 ~gi~f~~l~~~kgpav~---~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VV  167 (641)
T 3cp8_A           92 TGIQFRMLNRSKGPAMH---SPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAI  167 (641)
T ss_dssp             HEEEEEEECSSSCTTTC---EEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEE
T ss_pred             cCCchhhcccccCcccc---chhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEE
Confidence            011111    0111 11   1123589989999999999885 888865 58999988888876 888888899999999


Q ss_pred             EecCCChH
Q 007945          255 DAMGNFSP  262 (584)
Q Consensus       255 dADG~~S~  262 (584)
                      .|+|.+|.
T Consensus       168 LATG~~s~  175 (641)
T 3cp8_A          168 LACGTFLN  175 (641)
T ss_dssp             ECCTTCBT
T ss_pred             ECcCCCCC
Confidence            99998754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.88  E-value=8.7e-09  Score=115.36  Aligned_cols=141  Identities=23%  Similarity=0.197  Sum_probs=91.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCcccccchhhhcccCCc
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN  182 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~----w~Is~~-~l~~L~~lGl~~~~ele~~i~~~~~~~  182 (584)
                      +||||||||| +|+++|+.+|+.|++|+|||++. ..+...+    -++... -.+.+..+|-.-    .....    ..
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~----~~~~d----~~   98 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEM----GKAID----QT   98 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSH----HHHHH----HH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHH----HHHhh----hc
Confidence            6999999964 79999999999999999999984 2221111    112222 233444444210    00000    00


Q ss_pred             eeeecC----CCc-ccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEE
Q 007945          183 RCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIID  255 (584)
Q Consensus       183 ~v~f~~----~~~-l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVId  255 (584)
                      .+.|..    ..+ .+   .+...+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+. |.+.+|.+++|+.||.
T Consensus        99 gi~f~~l~~~kGpav~---~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVL  174 (637)
T 2zxi_A           99 GIQFKMLNTRKGKAVQ---SPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVV  174 (637)
T ss_dssp             EEEEEEESTTSCGGGC---EEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEE
T ss_pred             ccceeecccccCcccc---chhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence            111110    111 11   112357888999999999988 488885 579999988777664 7788898999999999


Q ss_pred             ecCCChH
Q 007945          256 AMGNFSP  262 (584)
Q Consensus       256 ADG~~S~  262 (584)
                      |+|..|.
T Consensus       175 ATG~~s~  181 (637)
T 2zxi_A          175 TTGTFLN  181 (637)
T ss_dssp             CCTTCBT
T ss_pred             ccCCCcc
Confidence            9998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.87  E-value=2.3e-08  Score=102.67  Aligned_cols=119  Identities=16%  Similarity=0.195  Sum_probs=86.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|+|||+++..+.         .+...                  +....+  ..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg---------~~~~~------------------~~~~~~--~~   55 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG---------QLTAL------------------YPEKYI--YD   55 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCH---------HHHHT------------------CTTSEE--CC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC---------eeecc------------------CCCcee--ec
Confidence            589999996 5799999999999999999999865431         00000                  000000  00


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                      ...+  +     .+++..+.+.+.+.+.+.+.+++.+++|++++.+++.+.|++.+|++++++.||.|+|..|...
T Consensus        56 ~~~~--~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p  124 (335)
T 2zbw_A           56 VAGF--P-----KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEP  124 (335)
T ss_dssp             STTC--S-----SEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEE
T ss_pred             cCCC--C-----CCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCC
Confidence            0000  0     1345677788888888889999999999999988778888888888999999999999986433

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.83  E-value=2.3e-08  Score=107.77  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=87.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCccc------ccc------hh
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVED------DID------EA  174 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~------ele------~~  174 (584)
                      .+||+|||| ++|+++|..|++.|+  +|+|+||.+..+.  .|...... .  ..+++-...      .+.      ..
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG--~~~~~~~~-~--~~~~ip~~~~~~~~~~~~~g~~~~~~   80 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG--VWNYTSTL-S--NKLPVPSTNPILTTEPIVGPAALPVY   80 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST--TCSCCSCC-C--SCCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCC--eecCCCCC-C--cccccccccccccccccccccccCCc
Confidence            589999996 579999999999999  9999999865441  12211000 0  000000000      000      00


Q ss_pred             hhcccCCc-------eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---
Q 007945          175 TATKFNPN-------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---  244 (584)
Q Consensus       175 i~~~~~~~-------~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---  244 (584)
                      ....|...       ...|.+   +..+.......++..+.+.|.+.+.+.+..++.+++|+++..+++.++|++.+   
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~  157 (447)
T 2gv8_A           81 PSPLYRDLQTNTPIELMGYCD---QSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA  157 (447)
T ss_dssp             CCCCCTTCBCSSCHHHHSCTT---CCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred             cCchhhhhccCCCHHHhccCC---CCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCC
Confidence            00000000       001110   00011111124567788888888887778899999999999888888888765   


Q ss_pred             Cc---EEEccEEEEecCCChH
Q 007945          245 GK---ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       245 G~---~i~ArlVIdADG~~S~  262 (584)
                      |+   +++++.||.|+|++|.
T Consensus       158 G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          158 GSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             TCCEEEEEESEEEECCCSSSS
T ss_pred             CCeeEEEEeCEEEECCCCCCC
Confidence            66   7999999999999763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.83  E-value=1.7e-08  Score=103.44  Aligned_cols=114  Identities=17%  Similarity=0.214  Sum_probs=81.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..+||+|||| ++|+++|..|+++|++|+|||+....+.   |..+          +     .+     ..+       .
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-------~   56 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQ---IAWS----------E-----EV-----ENF-------P   56 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGG---GGGC----------S-----CB-----CCS-------T
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcc---cccc----------c-----cc-----ccC-------C
Confidence            3699999996 5799999999999999999999843221   1100          0     00     000       0


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe--CCe-EEEEEcCCcEEEccEEEEecCCChH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY--ENA-AVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~--~~g-v~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      +   +  +    ..+++..+.+.+.+.+.+.|++++. +++++++.+  ++. +.|.+.+|++++++.||.|+|..+.
T Consensus        57 ~---~--~----~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           57 G---F--P----EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR  124 (325)
T ss_dssp             T---C--S----SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             C---C--C----CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence            0   0  0    1245667788888888889999887 689998876  443 6677778889999999999998653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.82  E-value=6.5e-08  Score=106.27  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE-EEEc-CCc--EEEcc-EEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~-V~~~-~G~--~i~Ar-lVIdADG~~S~  262 (584)
                      .+.+.|.+++++.|++++.+++|+++..++ +.++ |.+. +++  +|+|+ .||.|+|..|.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence            688899999999999999999999999873 4332 3333 333  69995 99999999983

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.82  E-value=4.6e-08  Score=102.02  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+++..+...|.+++.+.|++++. ++|+++..+           .+ +|+.||.|+|.+|.
T Consensus       137 ~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~-----------~~-~a~~VV~A~G~~s~  186 (363)
T 1c0p_A          137 LSVHAPKYCQYLARELQKLGATFER-RTVTSLEQA-----------FD-GADLVVNATGLGAK  186 (363)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT-----------CS-SCSEEEECCGGGGG
T ss_pred             ceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhhc-----------Cc-CCCEEEECCCcchh
Confidence            3589999999999999999999998 888876432           12 89999999999995

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.80  E-value=4.3e-08  Score=98.33  Aligned_cols=110  Identities=21%  Similarity=0.248  Sum_probs=81.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      +|||+|||| ++|+++|..|+++|++|+|||+++..+..  +.                              ....+.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~--~~------------------------------~~~~~~~   49 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF--AS------------------------------HSHGFLG   49 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG--CS------------------------------CCCSSTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc--ch------------------------------hhcCCcC
Confidence            589999996 57999999999999999999987532100  00                              0000000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .          ..++...+...+.+.+.+.+ ++++ .++|++++.+++.+.|++.+|++++++.||.|+|..+.
T Consensus        50 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           50 Q----------DGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE  113 (297)
T ss_dssp             C----------TTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred             C----------CCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence            0          01445677888888888874 4554 45999999998889999988999999999999999754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.79  E-value=3.3e-08  Score=100.98  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..+|||+|||| ++|+++|..|+++|++|+||||....+.   +..+          .     .+     ..       +
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~-------~   63 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGL---TAEA----------P-----LV-----EN-------Y   63 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGG---GGGC----------S-----CB-----CC-------B
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc---cccc----------c-----hh-----hh-------c
Confidence            34699999996 5799999999999999999999643221   1100          0     00     00       0


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+   +       ..++...+.+.+.+.+.+.|++++. +++++++.+++.++|.+ ++.+++++.||.|+|..+.
T Consensus        64 ~~---~-------~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           64 LG---F-------KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             TT---B-------SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred             CC---C-------cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence            00   0       1234556777888888888988887 78999988888888877 6678999999999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.78  E-value=5.6e-08  Score=109.11  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeE---EEE-EcCCc--EEEccEEEEecCCChHHHhH
Q 007945          204 PAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAA---VLL-LAEGK--ILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv---~V~-~~~G~--~i~ArlVIdADG~~S~v~rq  266 (584)
                      ...+.+.|.+++.+.| ++++.++.|+++..+++.+   .+. +.+|+  +++|+.||.|+|..|.+...
T Consensus       133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~  202 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY  202 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSS
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccC
Confidence            3568889999998888 8999999999999887743   332 24676  79999999999999987643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.77  E-value=5.5e-08  Score=107.78  Aligned_cols=133  Identities=18%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             CccEEEEcch-HHHHHHHHHH-hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGGT-LGIFIATALS-FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LA-r~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ++|||||||| +|+++|..|+ +.|++|+|||+++..+..-.++-.         -|..  ..+.   ...|..   .|.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~y---------pg~~--~d~~---s~~~~~---~~~   70 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY---------PGAL--SDTE---SHLYRF---SFD   70 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCC---------TTCE--EEEE---GGGSSC---CSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCC---------CCce--ecCC---cceeee---ccc
Confidence            5899999965 6999999999 999999999998755421000000         0100  0000   001100   010


Q ss_pred             CCCccc-ccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~-~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                        ..+. .+.......+...+.+.+.+.+.+.|.  .++.+++|++++.+++  .++|++.+|++++|+.||.|+|..|
T Consensus        71 --~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           71 --RDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             --HHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             --cccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence              0000 000001124567788888888888888  8999999999998876  7889998999999999999999866

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.77  E-value=3e-08  Score=106.58  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE---------------eCCeE-EEEEcCCcEE--EccEEEEecCCChH
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---------------YENAA-VLLLAEGKIL--SSHLIIDAMGNFSP  262 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~---------------~~~gv-~V~~~~G~~i--~ArlVIdADG~~S~  262 (584)
                      .+++..+.+.|.+++++.|++++.+++|+++..               +++++ .|.+.+| ++  +|+.||.|+|.+|.
T Consensus       177 ~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred             EEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence            478889999999999999999999999999987               45554 4777667 68  99999999999997


Q ss_pred             -HHhHhcC
Q 007945          263 -VVKQIRS  269 (584)
Q Consensus       263 -v~rql~~  269 (584)
                       +.++++.
T Consensus       256 ~l~~~~g~  263 (448)
T 3axb_A          256 RLLNPLGI  263 (448)
T ss_dssp             HHHGGGTC
T ss_pred             HHHHHcCC
Confidence             7776653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.77  E-value=5.1e-07  Score=96.82  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=38.2

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ++|+.+++|++|..++++++|++.+|++++|+.||-|.....
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence            589999999999998889999998998999999999987665

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.76  E-value=5e-08  Score=98.98  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=81.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|+||||+ ..+.   |..                           ......+.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~gg~---~~~---------------------------~~~~~~~~~   63 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-PGGQ---LTE---------------------------AGIVDDYLG   63 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-TTGG---GGG---------------------------CCEECCSTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCe---ecc---------------------------cccccccCC
Confidence            589999996 57999999999999999999998 2221   110                           000000000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                         .  +     .++...+.+.+.+.+.+.|++++. ++|+++..+++.+.|++.+|.++.++.||-|+|..+
T Consensus        64 ---~--~-----~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           64 ---L--I-----EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             ---S--T-----TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             ---C--C-----CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence               0  0     134567788888888889999888 999999888888889998888999999999999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.75  E-value=5.5e-08  Score=99.06  Aligned_cols=110  Identities=18%  Similarity=0.233  Sum_probs=76.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      +|||+|||| |+|+++|..|+|+|++|+|||+....+.     +                       ...+ +   .|..
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~-----~-----------------------~~~~-~---~~~~   53 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNR-----V-----------------------TQNS-H---GFIT   53 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGG-----G-----------------------SSCB-C---CSTT
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCe-----e-----------------------eeec-C---CccC
Confidence            699999995 6799999999999999999998754331     0                       0000 0   0100


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .          -.+++..+.+...+++.+.+...+....+..+...+ +..+|.+.+|+++++|.||-|+|...
T Consensus        54 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           54 R----------DGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQE  117 (304)
T ss_dssp             C----------TTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEE
T ss_pred             C----------CCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcc
Confidence            0          014455666777777777777666666666665544 45678888999999999999999753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.75  E-value=8e-08  Score=106.40  Aligned_cols=134  Identities=19%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++|||||||| +|+++|..|+++|++|+||||++..+..-.|+-.+         |+..  ....   ..|.   ..|. 
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~p---------g~~~--d~~~---~~~~---~~f~-   77 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYP---------GARC--DIES---IEYC---YSFS-   77 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT---------TCBC--SSCT---TTSS---CCSC-
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCC---------ceee--cccc---cccc---cccC-
Confidence            6999999965 69999999999999999999987654210001000         0000  0000   0000   0000 


Q ss_pred             CCcccc-cccccceeCHHHHHHHHHHHHHhCC--CEEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWV-EDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~-~~~l~~~vd~~~L~~~L~~~a~~~G--~~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                       ..+.. ........++..+.+.+...+.+.+  ..++.+++|+++..+++  .++|++.+|++++|+.||.|+|..|.
T Consensus        78 -~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~  155 (542)
T 1w4x_A           78 -EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV  155 (542)
T ss_dssp             -HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred             -hhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence             00000 0000011345667777777777665  57999999999988764  68899888989999999999998763

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.74  E-value=1.1e-06  Score=93.51  Aligned_cols=55  Identities=16%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+-+.|.+.+.+.|++|+.+++|+++..+++++ | +.+|++++||.||-|.|....
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHH
Confidence            456677888888899999999999998888888 6 457889999999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.72  E-value=8.6e-08  Score=97.72  Aligned_cols=114  Identities=21%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCcee-eec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRC-GFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v-~f~  187 (584)
                      .+||+|||| ++|+++|..|+++|++|+|||+.+..+.  .|       ...                  +....+ .+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG--~~-------~~~------------------~~~~~~~~~~   59 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG--QL-------SAL------------------YPEKYIYDVA   59 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--HH-------HHH------------------CTTSEECCST
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc--ee-------hhc------------------CCCceEeccC
Confidence            589999996 5799999999999999999999875431  01       000                  000000 000


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +     .+     .+++..+...+.+.+.+.|++++.+++|++++.+++ .+.|++.+|+ +.++.||-|+|..|
T Consensus        60 ~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           60 G-----FP-----KIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGA  123 (332)
T ss_dssp             T-----CS-----SEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSC
T ss_pred             C-----CC-----CCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCc
Confidence            0     00     134677888888899888999999999999988876 7888887776 99999999999954

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.71  E-value=3.3e-08  Score=101.39  Aligned_cols=118  Identities=17%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|+|||+.....    +.+.          |.+.        ..    ..+  ..
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~----~~~g----------g~~~--------~~----~~~--~~   59 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND----IAPG----------GQLT--------TT----TDV--EN   59 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT----BCTT----------CGGG--------GC----SEE--CC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccc----cCCC----------ceee--------ec----ccc--cc
Confidence            589999996 579999999999999999999821100    0000          0000        00    000  00


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .     +. +...+++..+.+.+.+.+.+.|++++.++ +++++.+++.++|++ +|.+++++.||.|+|.+|..
T Consensus        60 ~-----~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           60 F-----PG-FPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             S-----TT-CTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             C-----CC-CccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            0     00 01124566788888888888999999887 888887777788887 78899999999999998643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.71  E-value=1.1e-07  Score=105.75  Aligned_cols=133  Identities=19%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++|||||||| +|+++|..|++.|++|+|||+++..+..-.++-.         -|...  .+.   ...|..   .|. 
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~y---------pg~~~--dv~---s~~y~~---~f~-   82 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY---------PGARC--DVE---SIDYSY---SFS-   82 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC---------TTCBC--SSC---TTTSSC---CSC-
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC---------CCcee--CCC---chhccc---ccc-
Confidence            6999999965 6999999999999999999998754421000100         01100  000   001100   010 


Q ss_pred             CCccc-ccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~-~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       ..+. .+.......+...+.+.+.+.+.+.|.  .++.+++|++++.+++  .++|++.+|++++|+.||.|+|..|
T Consensus        83 -~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           83 -PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             -HHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred             -cccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence             0000 000001124567788888888888887  8999999999988776  7889998999999999999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.70  E-value=6.7e-08  Score=99.62  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..+||+||||| +|+++|..|+++|++|+|||+....+.   |...             .  ..     ..+       .
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~~-------~   62 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGA---LMTT-------------T--DV-----ENY-------P   62 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCG---GGSC-------------S--CB-----CCS-------T
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc---eecc-------------c--hh-----hhc-------C
Confidence            36999999965 699999999999999999997643221   1000             0  00     000       0


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCCcEEEccEEEEecCCChH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V-~~~~G~~i~ArlVIdADG~~S~  262 (584)
                              . +...+++..+.+.+.+.+.+.|++++.++ +++++. ++.++| .+.+|++++++.||.|+|..+.
T Consensus        63 --------~-~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           63 --------G-FRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAAR  127 (335)
T ss_dssp             --------T-CTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             --------C-CCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence                    0 01124566777888888888899999887 888876 555667 7778889999999999998763

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.70  E-value=4.3e-08  Score=100.28  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..+||+|||| ++|+++|..|+++|++|+|||+.+....    .+.          |.+..           ......+.
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~----~~g----------g~~~~-----------~~~~~~~~   75 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGI----AAG----------GQLTT-----------TTEIENFP   75 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB----CTT----------CGGGG-----------SSEECCST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCC----CcC----------ccccc-----------chhhcccC
Confidence            3699999996 5799999999999999999999752110    000          10000           00000000


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~~i~ArlVIdADG~~S  261 (584)
                      +         +...++...+.+.+.+.+.+.|++++.++ +++++.+++.+.+.+.   ++.++.++.||.|+|..+
T Consensus        76 ~---------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           76 G---------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             T---------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             C---------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            0         01124566788888899999999999998 9999888888888874   577899999999999865

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.69  E-value=2.4e-07  Score=104.35  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ...+.+.|.+++.+.|++++.++.|+++..+++.+. |.+   .+|+  +|+|+.||.|+|..|.+
T Consensus       154 G~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          154 GHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            346888999999999999999999999988766432 332   3564  69999999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.68  E-value=2.2e-07  Score=103.60  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc----------------ccC--CHHH-HHHHHHcCCC--c
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE----------------WNI--SRKE-LLELVESGIL--V  167 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~----------------w~I--s~~~-l~~L~~lGl~--~  167 (584)
                      .+||||||| ++|+++|..|+++|++|+|+||.+..+....                +++  +... .+.+...|..  +
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            689999996 5799999999999999999999986542110                011  1111 1111122211  0


Q ss_pred             ccccch-----------hhhcccCCceeeecCCCcccccccc---cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE
Q 007945          168 EDDIDE-----------ATATKFNPNRCGFEGKGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT  233 (584)
Q Consensus       168 ~~ele~-----------~i~~~~~~~~v~f~~~~~l~~~~~l---~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~  233 (584)
                      +.-++.           +.........+...++..  .+..+   +.......+.+.|.+++.+.|++++.+++|+++..
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~--~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~  283 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGAS--VNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE  283 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCS--SCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCc--CCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEE
Confidence            000000           000000001111111100  01000   00123567889999999999999999999999987


Q ss_pred             eC-Ce---EEEEEcCCc--EEEccEEEEecCCChHH
Q 007945          234 YE-NA---AVLLLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       234 ~~-~g---v~V~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ++ +.   +++...+|+  +|+|+.||.|+|..|..
T Consensus       284 ~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~  319 (572)
T 1d4d_A          284 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN  319 (572)
T ss_dssp             C--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccC
Confidence            76 53   333333564  69999999999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.67  E-value=1.6e-07  Score=97.52  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| ++|+++|..|++.|+ +|+|||+.+ .+.  .|..++..      ..+.+....    ...+..  ..+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg--~~~~~~~~------~~~~~~~~~----~~~~g~--~~~~   68 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGH--SFKHWPKS------TRTITPSFT----SNGFGM--PDMN   68 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTH--HHHTSCTT------CBCSSCCCC----CGGGTC--CCTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCC--ccccCccc------ccccCcchh----cccCCc--hhhh
Confidence            589999996 579999999999999 999999987 331  11100000      000000000    000000  0000


Q ss_pred             CCCcccccc--cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~--~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .......+.  .....+++..+.+.+.+.+.+.|++++.+++|++++.+++++.|++.++ ++.++.||-|+|..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           69 AISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             CSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             hccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            000000000  0001245567778888888888999999999999988777888888666 699999999999976

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.67  E-value=1e-07  Score=96.70  Aligned_cols=117  Identities=20%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCcee-ee
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRC-GF  186 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v-~f  186 (584)
                      ..|||||||| |+|+++|..|+++|++|+|+|+....+...  +            |         ++...   ..+ .+
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~--~------------G---------~~~~~---~~i~~~   56 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAA--G------------G---------QLTTT---TIIENF   56 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCT--T------------C---------GGGGS---SEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccc--C------------C---------CcCCh---HHhhhc
Confidence            4699999995 679999999999999999999976433210  0            0         00000   000 00


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .+     .+    ..++...+...+.+.+.+.+.++...+ +.......+...+.+.++.+++++.||-|+|...
T Consensus        57 ~g-----~~----~~i~~~~l~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           57 PG-----FP----NGIDGNELMMNMRTQSEKYGTTIITET-IDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             TT-----CT----TCEEHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEEEETTCCEEEEEEEEECCCEEE
T ss_pred             cC-----Cc----ccCCHHHHHHHHHHHHhhcCcEEEEeE-EEEeecCCCceEEEECCCeEEEEeEEEEcccccc
Confidence            00     01    124556777778888888888876554 5555556666677777888999999999999753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.66  E-value=1.2e-07  Score=98.44  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+++..+.+.|.+++++.|++++. ++|+++...           ..++|+.||.|+|.+|.
T Consensus       137 ~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~-----------~~~~a~~VV~A~G~~s~  187 (351)
T 3g3e_A          137 LILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV-----------AREGADVIVNCTGVWAG  187 (351)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH-----------HHTTCSEEEECCGGGGG
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh-----------hcCCCCEEEECCCcChH
Confidence            4589999999999999999999988 888765322           12679999999999985

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.66  E-value=5.8e-08  Score=107.59  Aligned_cols=59  Identities=10%  Similarity=0.059  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCceEEEEEE-eCC------eEE-EEEc---CCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICT-YEN------AAV-LLLA---EGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~-~~~------gv~-V~~~---~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+ .|++++.++.|+++.. +++      .+. |.+.   +|+  +++|+.||.|+|..|.+
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~  210 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV  210 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            4566778888888 6899999999999987 434      332 3332   465  79999999999999975

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.65  E-value=9.1e-08  Score=99.01  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCc---cc---c-----c-------CC-------HHHHHHHH
Q 007945          111 FDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGRE---QE---W-----N-------IS-------RKELLELV  161 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~---r~---w-----~-------Is-------~~~l~~L~  161 (584)
                      +||+||||| +|+++|..|++   +|++|+|+||++..+..   +.   +     .       .+       ...++.+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            699999965 69999999999   99999999998754310   00   0     0       00       11122222


Q ss_pred             HcCCCcccccchhhhcccCCceeee--cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE
Q 007945          162 ESGILVEDDIDEATATKFNPNRCGF--EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV  239 (584)
Q Consensus       162 ~lGl~~~~ele~~i~~~~~~~~v~f--~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~  239 (584)
                      ..|+..          .|......+  ......+...   -+.  ..+.+.|.+++   |++++.+++|+++..++++++
T Consensus        82 ~~g~~~----------~~~~~~~~~~~~~~~~~~~~~---~g~--~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~  143 (342)
T 3qj4_A           82 AYGVLR----------PLSSPIEGMVMKEGDCNFVAP---QGI--SSIIKHYLKES---GAEVYFRHRVTQINLRDDKWE  143 (342)
T ss_dssp             HTTSCE----------ECCSCEETCCC--CCEEEECT---TCT--THHHHHHHHHH---TCEEESSCCEEEEEECSSSEE
T ss_pred             hCCCee----------cCchhhcceeccCCccceecC---CCH--HHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEE
Confidence            223221          111100000  0000000000   011  13344444443   899999999999999988999


Q ss_pred             EEEcCCcEEEccEEEEecCC
Q 007945          240 LLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       240 V~~~~G~~i~ArlVIdADG~  259 (584)
                      |++.+|++++|+.||-|...
T Consensus       144 v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          144 VSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             EEESSSCCEEESEEEECSCH
T ss_pred             EEECCCCEEEcCEEEECCCH
Confidence            99988888999999999863

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.64  E-value=1.3e-07  Score=95.82  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      +|||+|||| ++|+++|..|+++|++|+|||+.. .+.   |.-         ..      .+            ..+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~-gG~---~~~---------~~------~~------------~~~~~   49 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF-GGQ---ILD---------TV------DI------------ENYIS   49 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST-TGG---GGG---------CC------EE------------CCBTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-Cce---ecc---------cc------cc------------ccccC
Confidence            489999996 579999999999999999998642 110   100         00      00            00000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---CeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~---~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                           .+     ..+...+.+.+.+.+.+.|++++.+++|+.++.+.   +.+.|++.+|++++++.||.|+|..+.
T Consensus        50 -----~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           50 -----VP-----KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR  116 (310)
T ss_dssp             -----BS-----SEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             -----cC-----CCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence                 00     12345677788888888899999999999987653   267888888889999999999998753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.62  E-value=2.6e-07  Score=100.65  Aligned_cols=61  Identities=16%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc-CCcEEEccEEEEecCCChHHHh
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~~i~ArlVIdADG~~S~v~r  265 (584)
                      ...+.+.|.+++++.|++++.++++ ++..+++.+. |.+. ++.+++|+.||.|+|..|.+..
T Consensus       118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~  180 (472)
T 2e5v_A          118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYE  180 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSS
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCc
Confidence            4567888888887789999999999 9988877552 3332 3345889999999999997653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.62  E-value=2.3e-07  Score=102.93  Aligned_cols=135  Identities=19%  Similarity=0.199  Sum_probs=85.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++|||||||| +|+++|..|++.|++|+|||+++..+..-.|+--+         |+..  ...   .+.|.   ..|..
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yP---------g~~~--d~~---~~~y~---~~f~~   71 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYP---------GCRL--DTE---SYAYG---YFALK   71 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT---------TCBC--SSC---HHHHC---HHHHT
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCC---------ceee--cCc---hhhcc---cccCc
Confidence            6899999965 69999999999999999999987554210011000         0000  000   00000   00000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                       .............+...+.+.+.+.+.+.|.  .+..+++|++++.+++  .++|++.+|++++|+.||.|+|..|.
T Consensus        72 -~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~  148 (545)
T 3uox_A           72 -GIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSA  148 (545)
T ss_dssp             -TSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC
T ss_pred             -ccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence             0000000001123566777888888888787  7899999999987655  68899989999999999999997653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.62  E-value=1.4e-07  Score=96.07  Aligned_cols=112  Identities=12%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .+||+|||| ++|+++|..|+++|++|+|||+....+.   |..+             .  ..     ..       +.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~-------~~~   54 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ---LTTT-------------T--EV-----EN-------WPG   54 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG---GGGC-------------S--BC-----CC-------STT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCce---Eecc-------------h--hh-----hh-------CCC
Confidence            589999996 5799999999999999999997533221   1000             0  00     00       000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                         +      ...+++..+.+.+.+.+.+.|++++.++ +++++.+++.++| +.++.+++++.||.|+|..+.
T Consensus        55 ---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~  117 (320)
T 1trb_A           55 ---D------PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASAR  117 (320)
T ss_dssp             ---C------CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEEC
T ss_pred             ---C------CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcC
Confidence               0      0113456677778888888899999886 8888777777777 667889999999999998653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.60  E-value=2.1e-07  Score=98.80  Aligned_cols=57  Identities=23%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .+-+.|.+.+.+.|++|+.+++|+++..++++++ |++ +|++++|+.||-|.|.....
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~  254 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATA  254 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHH
Confidence            4667788888889999999999999999988876 766 57889999999999887653

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.58  E-value=6.5e-07  Score=101.47  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEE-cCCc--EEEccEEEEecCCChHH
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv---~V~~-~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ...+...|.+++.+.|++++.++.|+++..+++.+   ++.. .+|+  .++|+.||.|+|..+.+
T Consensus       157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            34688899999988999999999999998876643   3322 4565  59999999999999854

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.57  E-value=5.1e-07  Score=101.08  Aligned_cols=59  Identities=14%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+.+.|.+++.+.|++++.++.|+++..+ ++.+. |.+   .+|+  +++|+.||.|+|..|.+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            567888999999999999999999999886 44332 332   3564  69999999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.57  E-value=1.9e-07  Score=101.48  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHh---CCCe---EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce
Q 007945          111 FDVIVCGG-TLGIFIATALSF---KGLR---VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR  183 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr---~Glr---VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~  183 (584)
                      +||+|||| ++|+++|..|++   .|++   |+|||+.+..+.  .|......  .+...|+.....+-...........
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG--~w~~~~~~--g~~~~g~~~~~~~y~~l~~~~~~~~   78 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG--QWNYTWRT--GLDENGEPVHSSMYRYLWSNGPKEC   78 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG--GGSCCSCC--SBCTTSSBCCCCCCTTCBCSSCGGG
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC--EeecCCCC--CccccCCCCcCccccchhhcCChhh
Confidence            69999996 579999999999   9999   999999875441  12211000  0000111000000000000000000


Q ss_pred             eeecCCCccccccc----ccceeCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCC--eEEEEEcC---C--cEEEc
Q 007945          184 CGFEGKGEIWVEDI----LNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYEN--AAVLLLAE---G--KILSS  250 (584)
Q Consensus       184 v~f~~~~~l~~~~~----l~~~vd~~~L~~~L~~~a~~~G~~--i~~~t~v~~v~~~~~--gv~V~~~~---G--~~i~A  250 (584)
                      ..|.+   +..+..    ....+++..+.+.+.+.+.+.|++  ++.+++|+++...++  .++|++.+   |  .++.+
T Consensus        79 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~  155 (464)
T 2xve_A           79 LEFAD---YTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF  155 (464)
T ss_dssp             TCBTT---BCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             cccCC---CCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEc
Confidence            11111   000000    011245677888888888888887  999999999988776  67777754   4  57999


Q ss_pred             cEEEEecCCChH
Q 007945          251 HLIIDAMGNFSP  262 (584)
Q Consensus       251 rlVIdADG~~S~  262 (584)
                      +.||.|+|+.|.
T Consensus       156 d~VVvAtG~~s~  167 (464)
T 2xve_A          156 DYVVCCTGHFST  167 (464)
T ss_dssp             SEEEECCCSSSS
T ss_pred             CEEEECCCCCCC
Confidence            999999997653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.55  E-value=8.6e-07  Score=96.37  Aligned_cols=60  Identities=20%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHHHh
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v~r  265 (584)
                      .+-+.|.+.+++.|++|+.+++|++|..+++.++ |+++||+++.||.||-+.+......+
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~  282 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRD  282 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC-------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHH
Confidence            3556788888899999999999999999999887 88999999999999987776655543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.53  E-value=3.6e-07  Score=100.66  Aligned_cols=113  Identities=20%  Similarity=0.244  Sum_probs=81.4

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ..|||+|||| ++|+++|..|+++|++|+|||+.. .+.   |.-+         .+      ++            .+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~-GG~---~~~~---------~~------~~------------~~~  259 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF-GGQ---VLDT---------VD------IE------------NYI  259 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TGG---GTTC---------SC------BC------------CBT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC-CCc---cccc---------cc------cc------------ccC
Confidence            4699999996 579999999999999999999642 111   1000         00      00            000


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---CeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~---~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      +     .+     ..+...+...+.+.+.+.|++++.+++|+++..+.   +.+.|++.+|.+++++.||.|+|..+.
T Consensus       260 ~-----~~-----~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          260 S-----VP-----KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             T-----BS-----SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             C-----CC-----CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            0     00     13456777888888888999999999999987542   367888888889999999999998653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.53  E-value=4.9e-07  Score=102.21  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHH---h-CCCeEEEEcCCCCCCCcc----cc--c--C----------CHHHH-HHHHH--c
Q 007945          110 TFDVIVCGG-TLGIFIATALS---F-KGLRVAIVERNTLKGREQ----EW--N--I----------SRKEL-LELVE--S  163 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LA---r-~GlrVlLIEr~~~~~~~r----~w--~--I----------s~~~l-~~L~~--l  163 (584)
                      +|||||||| ++|+++|..||   + +|++|+||||....+...    .+  +  +          +.+.. +....  .
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~  101 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM  101 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence            699999996 57999999999   6 899999999997543210    01  0  1          11111 11111  1


Q ss_pred             CCCcccccchhhh-----ccc-CCceeeecC--CCcccccccccceeCHHHHHHHHHHHHHhC-CC-EEEeCceEEEEEE
Q 007945          164 GILVEDDIDEATA-----TKF-NPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICT  233 (584)
Q Consensus       164 Gl~~~~ele~~i~-----~~~-~~~~v~f~~--~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~-~i~~~t~v~~v~~  233 (584)
                      ++.++.-++....     ..+ ....+.|..  ...+.........++...+.+.|.+.+.+. |+ +++.++.|+++..
T Consensus       102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~  181 (643)
T 1jnr_A          102 GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK  181 (643)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEE
Confidence            2222111100000     000 000011210  011110000001123334667788888877 99 9999999999988


Q ss_pred             eCC---eEE-EE---EcCCc--EEEccEEEEecCCChHH
Q 007945          234 YEN---AAV-LL---LAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       234 ~~~---gv~-V~---~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      +++   .++ |.   ..+|+  +|+|+.||.|+|..|.+
T Consensus       182 ~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          182 DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence            766   443 22   24554  69999999999998863

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.52  E-value=1.7e-05  Score=86.83  Aligned_cols=43  Identities=12%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       219 G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      |++|+.+++|++|..++++++|++.+|+++.||.||-|.+...
T Consensus       226 g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            7889999999999988888999998899999999999998765

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.49  E-value=5.3e-07  Score=97.20  Aligned_cols=143  Identities=13%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCC-----CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCc
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKG-----LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~G-----lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~  182 (584)
                      ..|||||||| ++|+++|..|+++|     ++|+||||.+..+.....-+..        ..+ ....+..+... .++.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~--------~~~-~~~~~~~l~~~-~~p~   98 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQ--------SEL-QISFLKDLVSL-RNPT   98 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSS--------CBC-SSCTTSSSSTT-TCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCC--------CcC-Ccchhhccccc-cCCC
Confidence            3689999996 57999999999999     9999999998655211000000        000 00000000000 0000


Q ss_pred             -eeeec----CCCccc-ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCe--EEEEEcCCc----E
Q 007945          183 -RCGFE----GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENA--AVLLLAEGK----I  247 (584)
Q Consensus       183 -~v~f~----~~~~l~-~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~g--v~V~~~~G~----~  247 (584)
                       ...|.    ....+. .+..-.....+..+.+.+...+.+.++.++.+++|++++.+   ++.  ++|++.+|.    +
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~  178 (463)
T 3s5w_A           99 SPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV  178 (463)
T ss_dssp             CTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE
T ss_pred             CCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE
Confidence             00000    000000 00000111346677788888888888999999999999876   333  467776665    8


Q ss_pred             EEccEEEEecCCCh
Q 007945          248 LSSHLIIDAMGNFS  261 (584)
Q Consensus       248 i~ArlVIdADG~~S  261 (584)
                      ++++.||.|+|..+
T Consensus       179 ~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          179 RTTRALVVSPGGTP  192 (463)
T ss_dssp             EEESEEEECCCCEE
T ss_pred             EEeCEEEECCCCCC
Confidence            99999999999854

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.48  E-value=1.5e-05  Score=85.89  Aligned_cols=41  Identities=10%  Similarity=-0.022  Sum_probs=36.9

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ++|+.+++|++|..++++++|++.+| +++|+.||-|.+...
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~  289 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQ  289 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHH
Confidence            69999999999999999999998888 899999999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.47  E-value=1e-06  Score=89.69  Aligned_cols=111  Identities=22%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .+|||+|||| |+|+++|..|+++|++|+||||....+...  +           .         .++   +     .+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~--~-----------~---------~~i---~-----~~p   54 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMA--N-----------T---------EEV---E-----NFP   54 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGG--G-----------C---------SCB---C-----CST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeee--c-----------c---------ccc---C-----CcC
Confidence            3799999995 579999999999999999999875433110  0           0         000   0     001


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +..          .+....+.........+.+..+.....+...... .. .+...+++++++|.||-|+|...
T Consensus        55 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~d~liiAtGs~~  116 (312)
T 4gcm_A           55 GFE----------MITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKG-EY-KVINFGNKELTAKAVIIATGAEY  116 (312)
T ss_dssp             TCS----------SBCHHHHHHHHHHHHHHTTCEEEECCCCEEEECS-SC-EEEECSSCEEEEEEEEECCCEEE
T ss_pred             Ccc----------ccchHHHHHHHHHHHhhccccccceeeeeeeeee-cc-eeeccCCeEEEeceeEEcccCcc
Confidence            000          1233445555566666677777776665554332 22 33345788999999999999653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.39  E-value=2.4e-06  Score=86.28  Aligned_cols=110  Identities=17%  Similarity=0.221  Sum_probs=76.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEE-EcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAI-VERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlL-IEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .+||+|||| ++|+++|..|+++|++|+| +||....+.   |...                       ...    ..+.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~---~~~~-----------------------~~~----~~~~   53 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQ---ITSS-----------------------SEI----ENYP   53 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGG---GGGC-----------------------SCB----CCST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCce---eeee-----------------------cee----ccCC
Confidence            689999996 5799999999999999999 999543221   1000                       000    0000


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEEEEEcCCcEEEccEEEEecCCC
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      +         ....++...+...+.+.+.+.|++++.+ +++++ .++  +.+.|.+..+.++.++.||-|+|..
T Consensus        54 ~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           54 G---------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSA  117 (315)
T ss_dssp             T---------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             C---------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCC
Confidence            0         0112456677888888888889998887 88898 776  6677534332299999999999974

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.37  E-value=1.3e-06  Score=99.06  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhC--CCEEEeCceEEEEEEeCC---eEE---EE-EcCCc--EEEccEEEEecCCChH
Q 007945          204 PAKLIEIVKKRFISL--GGVIFEGYSVSSICTYEN---AAV---LL-LAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~--G~~i~~~t~v~~v~~~~~---gv~---V~-~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ...+.+.|.+++.+.  |++++.++.++++..+++   .+.   +. ..+|+  .|+|+.||.|+|..+.
T Consensus       165 G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             ETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            345677888888887  999999999999988766   332   22 23454  6999999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.32  E-value=3.7e-07  Score=99.47  Aligned_cols=142  Identities=23%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCcee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRC  184 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v  184 (584)
                      +.+|||||||| ++|+++|..|++.|++|+||||.+..+.. ..++ +...  ..+....++..  ++..  ..+   .+
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk--~ll~~~~~~~~--~~~~--~~~---gi   74 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSK--ALLHNAAVIDE--VRHL--AAN---GI   74 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHH--HHHHHHHHHHH--HHHG--GGG---TC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchH--HHHHHHHHHHH--HHHH--HhC---Cc
Confidence            34699999996 57999999999999999999996543311 0000 1000  01110000000  0000  000   01


Q ss_pred             eecCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC------------cEEEcc
Q 007945          185 GFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG------------KILSSH  251 (584)
Q Consensus       185 ~f~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G------------~~i~Ar  251 (584)
                      .+.. ..+..+...... --...+.+.+.+.+.+.|++++.++.+.   .+++.+.|++.+|            .+++++
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad  150 (482)
T 1ojt_A           75 KYPE-PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFK  150 (482)
T ss_dssp             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ccCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcC
Confidence            1100 000000000000 0001233445566677899999887654   4566777776555            679999


Q ss_pred             EEEEecCCChH
Q 007945          252 LIIDAMGNFSP  262 (584)
Q Consensus       252 lVIdADG~~S~  262 (584)
                      .||.|+|..+.
T Consensus       151 ~lViAtGs~p~  161 (482)
T 1ojt_A          151 NCIIAAGSRVT  161 (482)
T ss_dssp             EEEECCCEEEC
T ss_pred             EEEECCCCCCC
Confidence            99999999864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.32  E-value=2.1e-06  Score=91.38  Aligned_cols=42  Identities=17%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             hCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       217 ~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      +.| +|+.+++|+++..++++++|++.+|++++|+.||-|.|.
T Consensus       216 ~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          216 EIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             TCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             hCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            346 999999999999888889999988888999999999993

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.31  E-value=4.1e-07  Score=98.46  Aligned_cols=141  Identities=18%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||....+....++ +.  +...+...+++.     . +...+....+.  
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~~~~~g~~p--sk~ll~~~~~~~-----~-~~~~~~~~g~~--   72 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIP--SKALLRNAELVH-----I-FTKDAKAFGIS--   72 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHHHHHHSHHH--HHHHHHHHHHHH-----H-HHHHTTTTTEE--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcccccCchh--hHHHHHHHHHHH-----H-HHHHHHhcCCC--
Confidence            489999996 579999999999999999999984332110000 10  111111111110     0 00000000011  


Q ss_pred             CCCcccccccccc-eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChHH
Q 007945          188 GKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       188 ~~~~l~~~~~l~~-~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~v  263 (584)
                      +...+..+..... .--...+.+.+.+.+.+.|++++.++.+.   .+++.++|.+.+|  ++++++.||.|+|..+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           73 GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             ECCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence            0000000000000 00012345566677777899999887653   4566788888777  689999999999998743

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.29  E-value=6e-07  Score=97.20  Aligned_cols=142  Identities=20%  Similarity=0.215  Sum_probs=76.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-Cccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|++.|++|+||||.+..+ ....++ +....+  +....++     +.. ...+....+.+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l--~~~~~~~-----~~~-~~~~~~~g~~~   77 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKAL--LHSSHMY-----HEA-KHSFANHGVKV   77 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHH--HHHHHHH-----HHH-HHTHHHHTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHH--HHHHHHH-----HHH-HHHHHhcCccc
Confidence            699999996 579999999999999999999985433 211111 110110  0000000     000 00000000100


Q ss_pred             cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChHH
Q 007945          187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~v  263 (584)
                      .. ..+..+...... --...+.+.+.+.+.+.|++++.++.+.   .+++.++|++.+|  ++++++.||.|+|..+.+
T Consensus        78 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~  153 (470)
T 1dxl_A           78 SN-VEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSDVKS  153 (470)
T ss_dssp             SC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred             CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence            00 000000000000 0012244455666667799999998653   4667788877777  689999999999987644

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.29  E-value=2.6e-06  Score=92.72  Aligned_cols=58  Identities=19%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .+.+.+.+.+++.|++++.+++++++..+++++.|.+.+|+++.|+.||-|.|..+..
T Consensus       233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          233 DLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            3566777888888999999999999988888888999889899999999999986553

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.29  E-value=7.9e-06  Score=88.72  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          206 KLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       206 ~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      .+.+.|.+.+.+.| ++|+.+++|++|..++++++|++.+|++++|+.||-|.|...
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            35566777777778 899999999999988888999998888999999999999753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.29  E-value=4.1e-07  Score=98.78  Aligned_cols=141  Identities=20%  Similarity=0.188  Sum_probs=75.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||.+..+.. ..++ +.  +...+...+++     +.. ...+....+.+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p--sk~l~~~~~~~-----~~~-~~~~~~~gi~~   76 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIP--SKALLNNSHLF-----HQM-HTEAQKRGIDV   76 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH--HHHHHHHHHHH-----HHH-HHTSGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHH--HHHHHHHHHHH-----HHH-HHHHHhcCccc
Confidence            699999996 57999999999999999999996543311 0000 00  11111111110     000 00000000111


Q ss_pred             cCCCcccccccccc-eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cE------EEccEEEEec
Q 007945          187 EGKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KI------LSSHLIIDAM  257 (584)
Q Consensus       187 ~~~~~l~~~~~l~~-~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~------i~ArlVIdAD  257 (584)
                      .....+..+..... .--...+...+.+.+.+.|++++.++.+..   +++.++|++.+|  ++      ++++.||.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAt  153 (478)
T 1v59_A           77 NGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVAT  153 (478)
T ss_dssp             CSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECC
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECc
Confidence            00000000000000 000013344456667778999999987642   556778887666  56      9999999999


Q ss_pred             CCCh
Q 007945          258 GNFS  261 (584)
Q Consensus       258 G~~S  261 (584)
                      |..+
T Consensus       154 Gs~p  157 (478)
T 1v59_A          154 GSEV  157 (478)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9876

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.20  E-value=7.2e-06  Score=88.46  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEccEEEEecCCCh
Q 007945          219 GGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       219 G~~i~~~t~v~~v~~~~~gv~V~~---~~G~~i~ArlVIdADG~~S  261 (584)
                      |++|+.+++|++|..+++++.|++   .+|++++|+.||-|.+...
T Consensus       249 g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~  294 (478)
T 2ivd_A          249 GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHA  294 (478)
T ss_dssp             GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHH
T ss_pred             hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHH
Confidence            679999999999988888888887   6788899999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=3.1e-06  Score=91.31  Aligned_cols=140  Identities=19%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||||||| ++|+++|..|++.|++|+|||+....+....++ +....+  +....++     +..  ..+....+.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~~~~~g~~p~k~l--~~~~~~~-----~~~--~~~~~~g~~~~   73 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKAL--ISASHRY-----EQA--KHSEEMGIKAE   73 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHH--HHHHHHH-----HHH--HTCGGGTEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCcCcCcCchhhHHH--HHHHHHH-----HHH--HHHHhcCcccC
Confidence            689999996 579999999999999999999984333111111 111110  0000000     000  00000001111


Q ss_pred             CCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEccEEEEecCCChH
Q 007945          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       188 ~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i~ArlVIdADG~~S~  262 (584)
                      . .....+...... --...+.+.+.+.+.+.|++++.++.+.   .+++.+.|++.+| ++++++.||.|+|..+.
T Consensus        74 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p~  146 (455)
T 1ebd_A           74 N-VTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRPI  146 (455)
T ss_dssp             S-CEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEEC
T ss_pred             C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCCC
Confidence            0 000000000000 0001244455667777899999888653   4667788888777 68999999999998653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.15  E-value=2.7e-06  Score=91.36  Aligned_cols=109  Identities=16%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||||||| ++|+++|..|+++|+  +|+|||+.+.....+. .++                       ..+-..... 
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~l~-----------------------~~~~~~~~~-   58 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-PLS-----------------------KAYLAGKAT-   58 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-GGG-----------------------TTTTTTCSC-
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-CCc-----------------------HHHhCCCCC-
Confidence            589999996 579999999999999  7999998864321110 000                       000000000 


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                        ...+.        ..       +.+.+.+.|++++.+++|+.++.++.  +|++.+|+++.++.||.|+|..+.
T Consensus        59 --~~~~~--------~~-------~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p~  115 (431)
T 1q1r_A           59 --AESLY--------LR-------TPDAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRPR  115 (431)
T ss_dssp             --SGGGB--------SS-------CHHHHHHTTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC
T ss_pred             --hHHhc--------cc-------CHHHHHhCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCcc
Confidence              00010        00       11233457899999999999875544  566778889999999999998653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=86.63  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCCh
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      |-+.|.+.+.+.|++|+.+++|+++..++++ +.|++ ++.+++|+.||-|.+...
T Consensus       236 l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          236 LPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASV  290 (477)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHHH
Confidence            5667777888889999999999999887776 77876 566899999999987643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.07  E-value=3e-06  Score=91.85  Aligned_cols=142  Identities=21%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||||||| ++|+++|..|+++|++|+|||+.+..+.. ..++ +....+  +....++     +......+....+..
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l--~~~~~~~-----~~~~~~~~~~~g~~~   78 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKAL--LNNSHYY-----HMAHGTDFASRGIEM   78 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHH--HHHHHHH-----HHHHSSHHHHTTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHH--HHHHHHH-----HHhhhhhHhhCcccc
Confidence            699999996 56899999999999999999998644311 1011 100000  0000000     000000000000000


Q ss_pred             cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-C-cEEEccEEEEecCCChH
Q 007945          187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-G-KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G-~~i~ArlVIdADG~~S~  262 (584)
                      . ......+...... --.+.+...+.+.+.+.|++++.++.+ .  .+++.++|++.+ + ++++++.||.|+|..+.
T Consensus        79 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~--~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~  153 (474)
T 1zmd_A           79 S-EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-I--TGKNQVTATKADGGTQVIDTKNILIATGSEVT  153 (474)
T ss_dssp             S-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-E--EETTEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ecCCEEEEEecCCCcEEEEeCEEEECCCCCCC
Confidence            0 0000000000000 001123334456667789999888643 2  356778888776 4 57999999999998653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.07  E-value=6e-05  Score=82.84  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe----EEEEEcCCc-EEEccEEEEecCCChHH---HhHhc
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-ILSSHLIIDAMGNFSPV---VKQIR  268 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g----v~V~~~~G~-~i~ArlVIdADG~~S~v---~rql~  268 (584)
                      .+.+.+.+.+++.|++++.+++|+++..++++    +.|++.+|+ ++.|+.||-|.|..+..   .+.++
T Consensus       256 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~g  326 (523)
T 1mo9_A          256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILG  326 (523)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcC
Confidence            45667788888899999999999999876565    678888887 89999999999988654   45554

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.07  E-value=2.6e-05  Score=85.70  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..+|||||||| ++|+++|..|++.|++|+||||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            34799999996 568999999999999999999965

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.03  E-value=1.2e-05  Score=86.94  Aligned_cols=133  Identities=17%  Similarity=0.089  Sum_probs=71.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||+...+-. ..++ +....+...  ...     .+..  ..+..    +
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~--a~~-----~~~~--~~~~~----~   70 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREV--IQT-----AWRL--TNIAN----V   70 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHH--HHH-----HHHH--HHHHC----S
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHH--HHH-----HHHH--Hhccc----C
Confidence            699999996 56999999999999999999977654311 0001 100000000  000     0000  00000    0


Q ss_pred             cCCCcccccccccceeCHHHHH--HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcE--EEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLI--EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI--LSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~--~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~--i~ArlVIdADG~~  260 (584)
                        ...+..+......-.-..+.  ..+.+.+.+.|++++.+ ++..+  +++.+.|.+.+|++  ++++.||-|+|..
T Consensus        71 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           71 --KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred             --CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCC
Confidence              00000000000000000022  44445555668888776 45554  46778888888888  9999999999964

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.02  E-value=3.7e-06  Score=91.20  Aligned_cols=34  Identities=35%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||++.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            699999996 5699999999999999999999873

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.02  E-value=3e-05  Score=81.49  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -+|+||||| .|+-+|..|++.|.+|.++|+.+....                                          .
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~  183 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP------------------------------------------G  183 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh------------------------------------------c
Confidence            479999965 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql  267 (584)
                                  ..+..+.+.+.+.+++.|++++.+++++++..+++++.|++.+|+++.|+.||.|.|..+.  +.+.+
T Consensus       184 ------------~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~  251 (384)
T 2v3a_A          184 ------------LLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA  251 (384)
T ss_dssp             ------------TSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHT
T ss_pred             ------------ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHC
Confidence                        0011334566677778899999999999998888888888888999999999999998765  45555


Q ss_pred             c
Q 007945          268 R  268 (584)
Q Consensus       268 ~  268 (584)
                      +
T Consensus       252 g  252 (384)
T 2v3a_A          252 G  252 (384)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.01  E-value=1.1e-05  Score=88.04  Aligned_cols=139  Identities=18%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||+...+-. ..++ +....+...  .      +........+....+..
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~--~------~~~~~~~~~~~~~g~~~   96 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHA--S------EMFHQAQHGLEALGVEV   96 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHH--H------HHHHHHHHSSGGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHH--H------HHHHHHHhhHhhcCccc
Confidence            599999996 56999999999999999999987644311 0011 111111000  0      00000000000000100


Q ss_pred             cCCCcccccccccc-eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~-~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~  260 (584)
                      .. ..+..+..... .-....+...+...+.+.+++++.++...   .+++.+.|...+|  .+++++.||-|+|..
T Consensus        97 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~  169 (491)
T 3urh_A           97 AN-PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSD  169 (491)
T ss_dssp             CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEE
T ss_pred             CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCC
Confidence            00 00000000000 00001233344555667788888876432   4556778887776  579999999999965

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.95  E-value=1.7e-05  Score=85.80  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +|||+|||| ++|+++|..|++.|++|+|||+.+..+-. ..++ +....+  +....+     .+. +...+....+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l--~~~~~~-----~~~-~~~~~~~~g~~~   73 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKAL--LHATHL-----YHD-AHANFARYGLMG   73 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHH--HHHHHH-----HHH-HHHTHHHHTEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHH--HHHHHH-----HHH-HHHHHHhcCccc
Confidence            589999996 56999999999999999999998644311 0001 100000  000000     000 000000000000


Q ss_pred             cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S  261 (584)
                      .....+..+...... --...+...+.+.+.+.|++++.++.+.   .+++.++|.+.+|  ++++++.||.|+|...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p  148 (468)
T 2qae_A           74 GEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF---ETAHSIRVNGLDGKQEMLETKKTIIATGSEP  148 (468)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---EETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---eeCCEEEEEecCCceEEEEcCEEEECCCCCc
Confidence            000000000000000 0001233344556666789998887542   4667788888777  6899999999999754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.94  E-value=0.00011  Score=78.52  Aligned_cols=42  Identities=21%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             CCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCC
Q 007945          218 LGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .|++|+.+++|++|..++++ +.|++ +|++++||.||-|.+..
T Consensus       225 lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          225 LGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN  267 (453)
T ss_dssp             HGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred             cCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence            37899999999999998888 88876 77889999999998875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.91  E-value=4.7e-05  Score=82.87  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      .+|||||||| ++|+++|..|++.|++|+||||.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            3699999996 56899999999999999999984

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.88  E-value=7.1e-05  Score=80.91  Aligned_cols=98  Identities=12%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.|+|+.+.....                                          
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  207 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------------------------------  207 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-C--Cc--EEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~--G~--~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|++. +  |+  ++.++.||-|.|..+..
T Consensus       208 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          208 ------------GD-PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ------------cC-HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                        00 123445566777789999999999999888778888876 6  76  89999999999987654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.88  E-value=2.3e-05  Score=85.84  Aligned_cols=59  Identities=8%  Similarity=0.026  Sum_probs=47.4

Q ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--------eEEEEEcCC-----cEEEccEEEEecCCC
Q 007945          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--------AAVLLLAEG-----KILSSHLIIDAMGNF  260 (584)
Q Consensus       202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~--------gv~V~~~~G-----~~i~ArlVIdADG~~  260 (584)
                      ..+..+.+.|...+.+.+..+..+++|+++...++        .++|++.++     ++++||.||-|.|..
T Consensus       142 p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          142 PARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             CBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCE
T ss_pred             CCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCC
Confidence            45778888998888887778999999999987543        478887643     369999999999953

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.87  E-value=1.2e-05  Score=86.29  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      ..|||||||| +|+++|..|++   .|++|+|||+.+...    +..   .+..+ ..|.                    
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~----~~~---~~~~~-~~g~--------------------   55 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ----FVP---SNPWV-GVGW--------------------   55 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE----CGG---GHHHH-HHTS--------------------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc----ccC---Ccccc-ccCc--------------------
Confidence            4799999975 69999999998   899999999986321    100   00000 0000                    


Q ss_pred             ecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       186 f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                      .+.+.+...+.+.+.+.|++++. +++++++.++.  +|++.+|+++.++.||-|+|..+..
T Consensus        56 ----------------~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~~  114 (437)
T 3sx6_A           56 ----------------KERDDIAFPIRHYVERKGIHFIA-QSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKLAF  114 (437)
T ss_dssp             ----------------SCHHHHEEECHHHHHTTTCEEEC-SCEEEEETTTT--EEEETTSCEEECSEEEECCCCEECG
T ss_pred             ----------------cCHHHHHHHHHHHHHHCCCEEEE-eEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCcCc
Confidence                            01112222234445567888874 68888865544  6677788899999999999987643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.87  E-value=1.3e-05  Score=86.26  Aligned_cols=111  Identities=15%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      ||||||||| +|+++|..|++.  |++|+|||+.+..+...     . .+.... .|..     .     .+++      
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~-----~-~~~~~~-~g~~-----~-----~~~~------   57 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS-----C-GIALYL-GKEI-----K-----NNDP------   57 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG-----G-GHHHHH-TTCB-----G-----GGCG------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccc-----c-cchhhh-cCCc-----c-----cCCH------
Confidence            699999965 689999999988  99999999987432110     0 111000 0000     0     0000      


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-C--CcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~--G~~i~ArlVIdADG~~S  261 (584)
                        ..+.        .       .+.+.+.+.|++++.+++++.++.+++.+.+... +  +.+++++.||-|+|..+
T Consensus        58 --~~~~--------~-------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           58 --RGLF--------Y-------SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             --GGGB--------S-------CCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             --HHhh--------h-------cCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence              0000        0       0122334578999999999998776676666542 2  45799999999999654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.87  E-value=1.8e-05  Score=84.21  Aligned_cols=107  Identities=20%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~Glr--VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+|||||||| +|+++|..|+++|++  |+|||+.+..+-.+. .++                       ..+-..... 
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l~-----------------------~~~~~~~~~-   63 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-PLS-----------------------KEYLAREKT-   63 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-GGG-----------------------TTTTTTSSC-
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-cCC-----------------------HHHHcCCCC-
Confidence            6899999965 799999999999998  999999875331110 000                       000000000 


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                        ...+.        ..       ..+.+.+.|++++.+++++.++.+.  ..|.+.+|+++.++.||-|+|..
T Consensus        64 --~~~~~--------~~-------~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           64 --FERIC--------IR-------PAQFWEDKAVEMKLGAEVVSLDPAA--HTVKLGDGSAIEYGKLIWATGGD  118 (415)
T ss_dssp             --SGGGB--------SS-------CHHHHHHTTEEEEETCCEEEEETTT--TEEEETTSCEEEEEEEEECCCEE
T ss_pred             --HHHhc--------cC-------CHHHHHHCCcEEEeCCEEEEEECCC--CEEEECCCCEEEeeEEEEccCCc
Confidence              00000        00       0123345788999999999986543  35677788899999999999964

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.86  E-value=1.7e-05  Score=85.41  Aligned_cols=109  Identities=15%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .||||||| ++|+++|..|+++  |++|+|||+.+..+.... .+.     .+              ....     ..  
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~-~~~-----~~--------------~~~~-----~~--   55 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG-GLS-----AY--------------FNHT-----IN--   55 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc-cch-----hh--------------hcCC-----CC--
Confidence            69999996 5799999999988  999999999975441110 000     00              0000     00  


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~ArlVIdADG~~S  261 (584)
                      ....+.               ..+.+.+.+.|++++.+++|++++.++..+.++.. ++.+++++.||-|+|...
T Consensus        56 ~~~~~~---------------~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           56 ELHEAR---------------YITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             -----C---------------CCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCB
T ss_pred             CHHHhh---------------cCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCccc
Confidence            000000               00122335578899999999999887777777633 456899999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.85  E-value=3.7e-05  Score=82.70  Aligned_cols=106  Identities=18%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||||||| ++|+++|..|++.  |++|+|||+.+..+.... .+.     .                   +    +  
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~-~~p-----~-------------------~----~--   51 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC-GIP-----Y-------------------V----V--   51 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc-CCc-----c-------------------c----c--
Confidence            479999996 5799999999987  899999999874321100 000     0                   0    0  


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a-~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i~ArlVIdADG~~  260 (584)
                      . +.           .+...+.....+.+ .+.|++++.+++|++++  .+...|.+.++ .++.++.||-|+|..
T Consensus        52 ~-~~-----------~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~--~~~~~v~~~~g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           52 E-GL-----------STPDKLMYYPPEVFIKKRGIDLHLNAEVIEVD--TGYVRVRENGGEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             --------------------------CTHHHHTTCEEETTCEEEEEC--SSEEEEECSSSEEEEECSEEEECCCEE
T ss_pred             C-CC-----------CCHHHhhhcCHHHHHHhcCcEEEecCEEEEEe--cCCCEEEECCceEEEEcCEEEECCCCC
Confidence            0 00           00011111111222 45789999999998874  44567777667 489999999999964

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.85  E-value=1.7e-05  Score=86.16  Aligned_cols=110  Identities=16%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||||||| ++|+++|..|++.  |++|+|||+.+..+...+ +     +..+. .+             .+.      
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-~-----~~~~~-~~-------------~~~------   89 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-G-----LPYVI-SG-------------AIA------   89 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-G-----HHHHH-TT-------------SSS------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-C-----cchhh-cC-------------CcC------
Confidence            479999996 5689999999985  999999999875431110 0     11100 00             000      


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a-~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~S  261 (584)
                       ....+.         .      ...+.+ .+.|++++.+++|+.++.+++.+.+.. .+|+  +++++.||.|+|..+
T Consensus        90 -~~~~l~---------~------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A           90 -STEKLI---------A------RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             -CGGGGB---------S------SCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             -CHHHhh---------h------cCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc
Confidence             000000         0      001222 335899999999999877777777765 3465  799999999999754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.84  E-value=6.3e-05  Score=81.68  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=29.1

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      .+|||||||| ++|+++|..|+++|++|+||||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            3699999996 56888899999999999999963

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.83  E-value=4.2e-05  Score=88.12  Aligned_cols=41  Identities=15%  Similarity=0.034  Sum_probs=37.5

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      .|++|+.+++|++|..++++++|++.+|++++|+.||-|..
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP  582 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCC
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCC
Confidence            47899999999999988889999998898999999999984

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.81  E-value=0.00011  Score=79.02  Aligned_cols=98  Identities=19%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.++|+.+...+.                                          
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------------  205 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT------------------------------------------  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc------------------------------------------
Confidence            369999965 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|++.+|+++.++.||-|+|..+..
T Consensus       206 ------------~~-~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          206 ------------MD-LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ------------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                        00 12334455666778999999999999998888888888888899999999999988764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.80  E-value=1e-05  Score=87.18  Aligned_cols=138  Identities=18%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||+|||| ++|+++|..|++.|++|+|||+.+..+ ....++..+ +...+....++     +.. ..  ....+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p-~k~l~~~~~~~-----~~~-~~--~~~g~~~~   71 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIP-SKALLETTERI-----YEA-KK--GLLGAKVK   71 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH-HHHHHHHHHHH-----HHH-HH--CCTTEEEC
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchh-HHHHHHHHHHH-----HHH-hh--hcCCcccC
Confidence            389999996 579999999999999999999985433 111111000 00001000000     000 00  00001111


Q ss_pred             CCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      . .....+...... --.+.+...+.+.+.+.|++++.++.+.   .+++.+.|++ +|++++++.||.|+|..+
T Consensus        72 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~-~g~~~~~d~lviAtG~~p  141 (455)
T 2yqu_A           72 G-VELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF---LSERKVLVEE-TGEELEARYILIATGSAP  141 (455)
T ss_dssp             C-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---SSSSEEEETT-TCCEEEEEEEEECCCEEE
T ss_pred             C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEee-CCEEEEecEEEECCCCCC
Confidence            0 000000000000 0001133334556666789998887542   3455666665 678899999999999754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=2.4e-05  Score=85.04  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +|||||||| ++|+++|..|++.|++|+||||+...+....++ +....+..-.        .+...+. ..  ....+.
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~--------~~~~~~~-~~--~~~g~~   79 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYAS--------DLATRVS-HA--NEYGLY   79 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHH--------HHHHHHT-TT--TTTTBS
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHH--------HHHHHHH-hH--HhcCcc
Confidence            699999996 569999999999999999999985433211001 1111110000        0000000 00  000000


Q ss_pred             C-------CCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEec
Q 007945          188 G-------KGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAM  257 (584)
Q Consensus       188 ~-------~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdAD  257 (584)
                      .       ...+..+...... --...+...+.+.+.+.|++++.++ +..+  +++.+.|.+.+|+  +++++.||-|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~~~v~~~~g~~~~~~~d~lviAt  156 (479)
T 2hqm_A           80 QNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGNVEVQKRDNTTEVYSANHILVAT  156 (479)
T ss_dssp             TTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSCEEEEESSSCCEEEEEEEEEECC
T ss_pred             cccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCEEEEEeCCCcEEEEEeCEEEEcC
Confidence            0       0000000000000 0001233445556667788888774 4443  4556777777776  89999999999


Q ss_pred             CCCh
Q 007945          258 GNFS  261 (584)
Q Consensus       258 G~~S  261 (584)
                      |...
T Consensus       157 Gs~p  160 (479)
T 2hqm_A          157 GGKA  160 (479)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.78  E-value=5.2e-05  Score=81.91  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      +|||||||| ++|+++|..|++.|++|+|||+....
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~G   39 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIG   39 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            699999996 56999999999999999999998543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.77  E-value=0.00013  Score=78.57  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+....                               .            
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  205 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S------------  205 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------------------h------------
Confidence            69999975 799999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 +++ .+.+.+.+.+++.|++++.+++++++..++++ +.|++.+|+++.++.||-|.|..+..
T Consensus       206 -----------~~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          206 -----------FDP-MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             -----------SCH-HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----------hhH-HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                       000 13345566667789999999999999876554 77888888899999999999988764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.76  E-value=2.8e-05  Score=84.28  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=31.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||....+
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   56 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   56 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            699999996 579999999999999999999886544

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.75  E-value=2.7e-05  Score=82.40  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=70.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ..-|+||||| +|+++|..|++.|.+|+|||+.+..+-.+.      .+...              +......       
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~------~l~~~--------------l~g~~~~-------   61 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP------RLNEI--------------IAKNKSI-------   61 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG------GHHHH--------------HHSCCCG-------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC------hhhHH--------------HcCCCCH-------
Confidence            4689999964 799999999888999999999875432111      11111              0000000       


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                       ..+..        .       ..+.+.+.|++++.+++|++++.++.  +|++++|+++.+|.||-|+|..
T Consensus        62 -~~l~~--------~-------~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           62 -DDILI--------K-------KNDWYEKNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             -GGTBS--------S-------CHHHHHHTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             -HHccC--------C-------CHHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCC
Confidence             01100        0       01223456899999999999876554  5677789999999999999974

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.75  E-value=2.1e-05  Score=82.62  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      .||+|||| ++|+++|..|++.| +|+|||+.+.....+.      .+.... .|.                  +.+   
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~------~l~~~~-~g~------------------~~~---   59 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKP------MLSHYI-AGF------------------IPR---   59 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCST------THHHHH-TTS------------------SCG---
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccc------hhHHHH-hCC------------------CCH---
Confidence            59999996 56888898999999 9999999875432111      111110 010                  000   


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      ..+..        .       ..+.+.+.|++++.+++|+.++.+.  .+|+ .+|++++++.||-|+|..
T Consensus        60 ~~~~~--------~-------~~~~~~~~~v~~~~g~~v~~id~~~--~~V~-~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           60 NRLFP--------Y-------SLDWYRKRGIEIRLAEEAKLIDRGR--KVVI-TEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             GGGCS--------S-------CHHHHHHHTEEEECSCCEEEEETTT--TEEE-ESSCEEECSEEEECCCEE
T ss_pred             HHhcc--------C-------CHHHHHhCCcEEEECCEEEEEECCC--CEEE-ECCcEEECCEEEECCCCC
Confidence            00100        0       0112234688999999998876543  3455 578899999999999964

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.74  E-value=3.8e-05  Score=83.82  Aligned_cols=142  Identities=13%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CccEEEEcch-HHHHHHHHHHhC---CCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCcee
Q 007945          110 TFDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRC  184 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~---GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v  184 (584)
                      +||||||||| +|+++|..|+++   |++|+||||...++....++ +....+  +....++      .. ...+....+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~GG~~~~~g~~psk~l--~~~a~~~------~~-~~~~~~~g~   72 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTF--IASTGLR------TE-LRRAPHLGF   72 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHH--HHHHHHH------HH-HTTTTTTTB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcCCcccCcCccchHHH--HHHHHHH------HH-HHHHHhCCC
Confidence            5899999965 699999999998   99999999987433211111 110110  0000000      00 000100001


Q ss_pred             ee-cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe----CCeEEEEEcCCc--EEEccEEEEe
Q 007945          185 GF-EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEGK--ILSSHLIIDA  256 (584)
Q Consensus       185 ~f-~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~----~~gv~V~~~~G~--~i~ArlVIdA  256 (584)
                      .+ .+...+..+...... --...+...+.+.+.+.|++++.++ +..++..    ++.+.|...+|+  +++++.||.|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviA  151 (499)
T 1xdi_A           73 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVA  151 (499)
T ss_dssp             C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred             ccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEc
Confidence            00 000000000000000 0001233445666777899998886 5544321    145667776776  7999999999


Q ss_pred             cCCCh
Q 007945          257 MGNFS  261 (584)
Q Consensus       257 DG~~S  261 (584)
                      +|...
T Consensus       152 TGs~p  156 (499)
T 1xdi_A          152 TGASP  156 (499)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.74  E-value=3.1e-05  Score=83.20  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      +||||||| ++|+++|..|++.  |++|+|||+.+..+...     . .+.... .+             .+.       
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~-----~-~~~~~~-~~-------------~~~-------   53 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS-----A-GMQLYL-EG-------------KVK-------   53 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG-----G-GHHHHH-TT-------------SSC-------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCccc-----c-cchhhh-cC-------------ccC-------
Confidence            48999996 4688888899987  99999999987543110     0 010000 00             000       


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~S  261 (584)
                      ....+..               .+.+.+.+.|++++.+++++.++.+++.+++.. .+|+  +++++.||-|+|...
T Consensus        54 ~~~~~~~---------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           54 DVNSVRY---------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             CGGGSBS---------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             CHHHhhc---------------CCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence            0000100               001233456899999999999877777676664 3454  499999999999754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.71  E-value=7e-05  Score=82.85  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +.+|||||||| +.|.++|..+|+.|.+|+|||+...
T Consensus        40 ~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           40 TYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             CSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            34699999996 5688888899999999999997653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.71  E-value=3e-05  Score=83.76  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=30.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||....+
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~GG   41 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGG   41 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence            699999996 569999999999999999999954433

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.68  E-value=5.7e-05  Score=84.09  Aligned_cols=110  Identities=17%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..||||||| ++|+++|..|+++  |++|+||||.+..+...+      .+... -.|.             +..     
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~------~lp~~-~~g~-------------~~~-----   90 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANC------GLPYY-IGGV-------------ITE-----   90 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG------GHHHH-HTTS-------------SCC-----
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCC------CCchh-hcCc-------------CCC-----
Confidence            579999996 5799999999988  999999999875442110      01100 0000             000     


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~  260 (584)
                        ...+              +...+...+.+.|++++.+++|++++.+++.+.+.. .+|+  ++.++.||-|+|..
T Consensus        91 --~~~~--------------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A           91 --RQKL--------------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             --GGGG--------------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             --hHHh--------------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCC
Confidence              0000              001112233456899999999999988777777764 3455  79999999999974

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.68  E-value=6.8e-05  Score=81.08  Aligned_cols=36  Identities=36%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||||||| ++|+++|..|++.|++|+|||+.+.++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~GG   42 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVGG   42 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            599999996 568899999999999999999987433

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.68  E-value=0.00027  Score=76.34  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+..-.                               .            
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~------------  204 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------------------Q------------  204 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------------------c------------
Confidence            69999975 799999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~-~i~ArlVIdADG~~S~v  263 (584)
                                 +++ .+.+.+.+.+++.|++++.+++++++..+++++.|++.+|+ ++.++.||-|.|..+..
T Consensus       205 -----------~~~-~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          205 -----------FDP-LLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             -----------cCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence                       000 12244556677789999999999999887778888888898 89999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.65  E-value=9.1e-05  Score=80.10  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=62.1

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      ..||+|||| ++|+++|..|+++  |++|+||||.+..+..++ .++     .+              +...+..     
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~-gl~-----~~--------------~~g~~~~-----   57 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGC-GIP-----YY--------------VSGEVSN-----   57 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccccc-ccc-----hh--------------hcCCCCc-----
Confidence            369999996 5799999999988  999999999875331110 000     00              0000000     


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~  260 (584)
                        ...+. +.       +..+...+.....+.|++++.+++|++++.++..+.+.. .+|+  ++.++.||-|+|..
T Consensus        58 --~~~~~-~~-------~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           58 --IESLQ-AT-------PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ---------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             --hHHhc-cc-------cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCC
Confidence              00000 00       000111112222246889999999999987777777664 2354  79999999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.65  E-value=8.7e-05  Score=77.96  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      +||||||||| +|+++|..|+++|  .+|+|+|++......+.                    .+..    .+       
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~--------------------~l~~----~~-------   52 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKP--------------------MLST----GF-------   52 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGG--------------------GGGG----TT-------
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcc--------------------cccH----HH-------
Confidence            5899999965 6999999999999  56899998752110000                    0000    00       


Q ss_pred             cCCCcccccccccceeCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~-~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      ...            .....+.. .+.+.+.+.|++++.+++++.++.++.  +|++. +.+++++.||-|+|...
T Consensus        53 ~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           53 SKN------------KDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIG-EEEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             TTT------------CCHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGT--EEEET-TEEEECSEEEECCCEEE
T ss_pred             hCC------------CCHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCC--EEEEC-CcEEECCEEEEeCCCCc
Confidence            000            00111111 122233457899999998888765444  44454 45799999999999754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.65  E-value=6.2e-05  Score=79.75  Aligned_cols=105  Identities=18%  Similarity=0.188  Sum_probs=67.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|||||||| +|+++|..|+++|+  +|+|||+.+..+-.+. .++.                  ..+.....       
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l~~------------------~~l~~~~~-------   55 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-PLSK------------------AYLKSGGD-------   55 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-GGGT------------------GGGGSCCC-------
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-cCCH------------------HHHCCCCC-------
Confidence            489999965 79999999999999  8999999874331110 0000                  00000000       


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                       ...+.        ..       ..+.+.+.+++++. +++++++.+..  .|++.+|+++.++.||-|+|..
T Consensus        56 -~~~~~--------~~-------~~~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           56 -PNSLM--------FR-------PEKFFQDQAIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             -TTSSB--------SS-------CHHHHHHTTEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEE
T ss_pred             -HHHcc--------CC-------CHHHHHhCCCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCC
Confidence             00010        00       01223456788888 99999865544  5667788999999999999974

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.64  E-value=3.7e-05  Score=82.95  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEe--CCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTY--ENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~--~~gv-~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+-+.|.+.+++.|++++.+++|+++..+  ++.+ .|.+ +|++++|+.||.|.|..+.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            46667888888899999999999999988  6665 3555 6888999999999999865

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.63  E-value=2.9e-05  Score=79.81  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             ccCCCEEEeCCCCCCcCCCCCCc--hhhHHHHHHHHHHHHHHHHh
Q 007945          385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  427 (584)
Q Consensus       385 ~~~~rvlLvGDAA~~v~PltGgG--~g~~lr~~~~La~~i~~AL~  427 (584)
                      +.-++|+.+||||..++++...|  |+.++.+..+.|+.|.++|+
T Consensus       281 t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          281 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            34578999999999999887666  56667777778898888875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.62  E-value=7.2e-05  Score=81.64  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=72.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++||+|||| ++|+++|..|+++ ++|+|||+.+..+-.... .+                       .       .+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~-~~-----------------------~-------~~~g  155 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL-KG-----------------------I-------KQEG  155 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG-TC-----------------------S-------EETT
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec-cc-----------------------c-------ccCC
Confidence            589999996 5799999999999 999999998754321000 00                       0       0000


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~S  261 (584)
                         +  +.      +...+...+.+.+ +.|++++.++++.++..+++.+.+.. .+++  ++.++.||-|+|...
T Consensus       156 ---~--~~------~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          156 ---F--NK------DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID  219 (493)
T ss_dssp             ---T--TE------EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred             ---C--CC------CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence               0  00      2233444444444 56889999999999887776665544 3454  699999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.62  E-value=5.8e-05  Score=79.91  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          111 FDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr---~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .|||||||| +|+++|..|++   .|++|+|||+++.......+.                               ++  
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~-------------------------------~~--   48 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALP-------------------------------HV--   48 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSC-------------------------------CC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchh-------------------------------hc--
Confidence            489999965 79999999999   899999999987321000000                               00  


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc----EEEccEEEEecCCChH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~----~i~ArlVIdADG~~S~  262 (584)
                      . ........   +       ...+.+.+.+.|++++.+ +|++++.++..++  +.+++    ++.++.||-|+|....
T Consensus        49 ~-~~~~~~~~---~-------~~~~~~~~~~~gv~~~~~-~v~~i~~~~~~V~--~~~g~~~~~~~~~d~lViAtG~~~~  114 (409)
T 3h8l_A           49 A-IGVRDVDE---L-------KVDLSEALPEKGIQFQEG-TVEKIDAKSSMVY--YTKPDGSMAEEEYDYVIVGIGAHLA  114 (409)
T ss_dssp             C-SSCCCCCC---E-------EEEHHHHTGGGTCEEEEC-EEEEEETTTTEEE--EECTTSCEEEEECSEEEECCCCEEC
T ss_pred             c-cCCcCHHH---H-------HHHHHHHHhhCCeEEEEe-eEEEEeCCCCEEE--EccCCcccceeeCCEEEECCCCCcC
Confidence            0 00000000   0       111233445678998877 8888876555444  44443    4999999999998653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.61  E-value=4.8e-05  Score=80.84  Aligned_cols=105  Identities=18%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~Glr--VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .||||||| ++|+++|..|+++|++  |+|||+.+..+-.+. .++..   .+               ......      
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-~l~~~---~~---------------~g~~~~------   57 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-SLSKA---VL---------------DGSLER------   57 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-GGGTH---HH---------------HTSSSS------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-cccHH---Hh---------------CCCCCH------
Confidence            58999996 5799999999999988  999999875432211 11110   00               000000      


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                        ..+ ...               .+.+.+.|++++.+++++.++.+..  +|++.+|+++.++.||-|+|..
T Consensus        58 --~~~-~~~---------------~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           58 --PPI-LAE---------------ADWYGEARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             --CCB-SSC---------------TTHHHHTTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             --HHh-cCC---------------HHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence              001 000               1122356899999999999865443  5677788899999999999975

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.61  E-value=0.00012  Score=79.13  Aligned_cols=34  Identities=38%  Similarity=0.614  Sum_probs=30.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +|||+|||| ++|+++|..|++.|++|+|||+...
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   38 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKAL   38 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence            699999996 5699999999999999999999854

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.61  E-value=0.00028  Score=76.26  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.....                                          
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------------------------------  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE--eCCeEEEEEc-----CCcEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAAVLLLA-----EGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~--~~~gv~V~~~-----~G~~i~ArlVIdADG~~S~  262 (584)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..  +++.+.|++.     +++++.++.||-|.|..+.
T Consensus       222 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          222 ------------MD-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence                        00 12345566677788999999999999987  4556677765     3568999999999998765


Q ss_pred             H
Q 007945          263 V  263 (584)
Q Consensus       263 v  263 (584)
                      .
T Consensus       289 ~  289 (478)
T 1v59_A          289 I  289 (478)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.58  E-value=0.00037  Score=73.92  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-.                                          .
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------------~  190 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------------------R  190 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------------------h
Confidence            368999975 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH--HHhH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP--VVKQ  266 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~--v~rq  266 (584)
                       .          . ...+.+.+.+.+++.|++++.+++++++..+++.+ .|++++|+++.|+.||-|.|..+.  +.+.
T Consensus       191 -~----------~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~  258 (415)
T 3lxd_A          191 -V----------A-GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS  258 (415)
T ss_dssp             -T----------S-CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHH
T ss_pred             -h----------c-CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHh
Confidence             0          0 01344566677778899999999999998776665 588889999999999999998764  5555


Q ss_pred             hc
Q 007945          267 IR  268 (584)
Q Consensus       267 l~  268 (584)
                      ++
T Consensus       259 ~g  260 (415)
T 3lxd_A          259 AG  260 (415)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.56  E-value=3.6e-05  Score=84.11  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=30.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +|||||||| ++|+++|..|++.|++|+|||+...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   36 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL   36 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            589999996 5699999999999999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.54  E-value=3.6e-05  Score=83.45  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      .+-+.|.+.+.+.|+++..+++|+++..+++.  |++.+|+++.|+.||-+.-
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCC
Confidence            45667777777789999999999999776654  4567999999999996543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.54  E-value=0.00045  Score=78.49  Aligned_cols=52  Identities=10%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEccEEEEecCCCh
Q 007945          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       208 ~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~~i~ArlVIdADG~~S  261 (584)
                      ...+.+.+++.|++++.+++++++.  ++++.+...   +++++.|+.||-|.|..+
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p  624 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVG--AGGVTVRDTYASIERELECDAVVMVTARLP  624 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEE--TTEEEEEETTTCCEEEEECSEEEEESCEEE
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEE--CCeEEEEEccCCeEEEEECCEEEECCCCCC
Confidence            4567778888999999999999975  456666542   356899999999998753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.53  E-value=0.0014  Score=73.09  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      ...|||+|||| ++|+++|..|+++|++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            44699999996 57999999999999999999984

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.52  E-value=0.00017  Score=76.60  Aligned_cols=104  Identities=15%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Glr--VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .+||+|||| ++|+++|..|++.|.+  |+|||+.+..+..++ .++..   .+               .... .     
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~~~~~---~~---------------~~~~-~-----   61 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-PLSKD---FM---------------AHGD-A-----   61 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-GGGTH---HH---------------HHCC-G-----
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-CCCHH---Hh---------------CCCc-h-----
Confidence            689999996 5799999999999984  999999864321110 01100   00               0000 0     


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                         ..+.        +.          .+.+.|++++.+++|+.++.+.  .+|++.+|++++++.||.|+|..+
T Consensus        62 ---~~~~--------~~----------~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           62 ---EKIR--------LD----------CKRAPEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ---GGSB--------CC----------CTTSCSCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             ---hhhh--------HH----------HHHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCCC
Confidence               0000        11          2235688999999999986543  356677888999999999999854

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.50  E-value=0.00044  Score=74.32  Aligned_cols=98  Identities=20%  Similarity=0.265  Sum_probs=75.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -+|+||||| .|+-+|..|++.|.+|.++|+.+...+                                          .
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~  208 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------------G  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------c
Confidence            479999965 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|++.   +++++.++.||-|.|..+..
T Consensus       209 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          209 ------------FE-KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence                        00 123345566677889999999999999887777777765   35689999999999987653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.49  E-value=0.00038  Score=75.79  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcC
Q 007945          110 TFDVIVCGG-TLGIFIATALSF-KGLRVAIVER  140 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr  140 (584)
                      +|||+|||| ++|+++|..|++ .|++|+|||+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            699999996 568899999999 9999999993

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.47  E-value=0.00053  Score=73.33  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=77.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.+-.                                          .
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------~  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE------------------------------------------R  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------------------c
Confidence            379999965 799999999999999999998652110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE--eCCeE-EEEEcCCcEEEccEEEEecCCCh--HHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAA-VLLLAEGKILSSHLIIDAMGNFS--PVV  264 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~--~~~gv-~V~~~~G~~i~ArlVIdADG~~S--~v~  264 (584)
                        .         ++ ..+.+.+.+.+++.|++++.+++++++..  +++.+ .|.+.+|+++.|+.||-|.|..+  .+.
T Consensus       188 --~---------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~  255 (431)
T 1q1r_A          188 --V---------TA-PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELA  255 (431)
T ss_dssp             --T---------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHH
T ss_pred             --h---------hh-HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchh
Confidence              0         00 12334556667778999999999999976  44455 57888899999999999999754  456


Q ss_pred             hHhc
Q 007945          265 KQIR  268 (584)
Q Consensus       265 rql~  268 (584)
                      +.++
T Consensus       256 ~~~g  259 (431)
T 1q1r_A          256 SAAG  259 (431)
T ss_dssp             HHTT
T ss_pred             hccC
Confidence            6554

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.47  E-value=0.00032  Score=74.49  Aligned_cols=105  Identities=16%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-        ..   .                              
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l--------~~---~------------------------------  182 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL--------VR---V------------------------------  182 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------HH---H------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc--------hh---h------------------------------
Confidence            479999975 79999999999999999999875211        00   0                              


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql  267 (584)
                                  ++ ..+.+.+.+.+++.|++++.++++.++..++....|++++|+++.|++||-|.|..+.  +.+.+
T Consensus       183 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~  249 (410)
T 3ef6_A          183 ------------LG-RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQA  249 (410)
T ss_dssp             ------------HC-HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHT
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhC
Confidence                        00 1234555666777899999999999987655444688889999999999999998764  55655


Q ss_pred             cC
Q 007945          268 RS  269 (584)
Q Consensus       268 ~~  269 (584)
                      +.
T Consensus       250 gl  251 (410)
T 3ef6_A          250 GL  251 (410)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.46  E-value=0.001  Score=70.26  Aligned_cols=105  Identities=20%  Similarity=0.301  Sum_probs=80.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+....                                          .
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------~  180 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA------------------------------------------R  180 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh------------------------------------------h
Confidence            369999965 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCCh--HHHhH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS--PVVKQ  266 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S--~v~rq  266 (584)
                       .          . ...+.+.+.+.+++.|++++.+++++++..+++.++ |++.+|+++.|+.||-|.|..+  .+.+.
T Consensus       181 -~----------~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~  248 (404)
T 3fg2_P          181 -V----------V-TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAA  248 (404)
T ss_dssp             -T----------S-CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHH
T ss_pred             -c----------c-CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHh
Confidence             0          0 013445666777888999999999999988777664 8888999999999999999854  35665


Q ss_pred             hcC
Q 007945          267 IRS  269 (584)
Q Consensus       267 l~~  269 (584)
                      ++.
T Consensus       249 ~gl  251 (404)
T 3fg2_P          249 AGL  251 (404)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.46  E-value=0.0003  Score=83.07  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      +|||||||| ++|+++|..|+++|++|+|||+.+..+- +.+..                           +...+  .+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG-~~~~~---------------------------~k~~i--~~  177 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGG-TLLDT---------------------------AGEQI--DG  177 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG-GGGGS---------------------------SCCEE--TT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCc-eeccC---------------------------Ccccc--CC
Confidence            589999995 5799999999999999999999865431 00000                           00000  00


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEE---------EE------cCCcEEEccE
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVL---------LL------AEGKILSSHL  252 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V---------~~------~~G~~i~Arl  252 (584)
                                   .....+...+.+.+.+. +++++.+++|.++..++....+         ..      .++.++++|.
T Consensus       178 -------------~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~  244 (965)
T 2gag_A          178 -------------MDSSAWIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQ  244 (965)
T ss_dssp             -------------EEHHHHHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEE
T ss_pred             -------------CCHHHHHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCE
Confidence                         01123334455566664 7899999999887532211111         11      1123799999


Q ss_pred             EEEecCCC
Q 007945          253 IIDAMGNF  260 (584)
Q Consensus       253 VIdADG~~  260 (584)
                      ||-|+|..
T Consensus       245 lVlATGs~  252 (965)
T 2gag_A          245 VVLATGAH  252 (965)
T ss_dssp             EEECCCEE
T ss_pred             EEECCCCc
Confidence            99999985

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00055  Score=74.21  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-..                                           
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  223 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-------------------------------------------  223 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-------------------------------------------
Confidence            69999975 7999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCC-cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEG-KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G-~~i~ArlVIdADG~~S~v  263 (584)
                                 +| ..+.+.+.+.+++.|++++.+++++++..++++  +.|++.+| +++.++.||-|.|..+..
T Consensus       224 -----------~d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          224 -----------FD-ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             -----------cC-HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence                       00 122345556667789999999999999876555  67888888 789999999999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.44  E-value=0.00058  Score=74.40  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-.                                          .
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~  220 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP------------------------------------------Y  220 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC------------------------------------------C
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------c
Confidence            369999975 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                  ++ ..+.+.+.+.+++.|++++.+++|+++..+++++.|++.+|+++.|+.||-|.|..+..
T Consensus       221 ------------~d-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          221 ------------ED-ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ------------SS-HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                        01 12345566677888999999999999987776788888788899999999999988654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.44  E-value=0.00041  Score=74.41  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ..+|+||||| +|+.+|..|++.|.+|+++|+.+.....                                         
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----------------------------------------  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-----------------------------------------
Confidence            4689999965 7999999999999999999987521100                                         


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                        .          .+ ..+.+.+.+.+++.|++++.+++++++..+ +.+ .|.+ +++++.++.||-|.|..+.
T Consensus       188 --~----------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          188 --Y----------LD-KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             --T----------CC-HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             --c----------CC-HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence              0          00 124456677778889999999999998754 433 4555 5678999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.42  E-value=0.00033  Score=75.33  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=30.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +|||+|||| ++|+++|..|++.|++|+|||++..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   38 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL   38 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence            699999996 5688999999999999999999854

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.40  E-value=0.00023  Score=75.21  Aligned_cols=34  Identities=26%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      +||+||||| +|+.+|..||++|++|+|+|+++..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            699999975 6999999999999999999998743

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.40  E-value=0.00051  Score=74.02  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      +|||||||| ++|+++|..|++.|++|+|||+....
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~G   40 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCCCC
Confidence            599999996 56889999999999999999995443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.39  E-value=0.00013  Score=79.55  Aligned_cols=33  Identities=30%  Similarity=0.413  Sum_probs=28.7

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSF-KGLRVAIVER  140 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr  140 (584)
                      +.+|||||||| ++|+++|..|++ .|++|+|||+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            34699999996 568888999999 9999999994

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.39  E-value=0.0011  Score=70.24  Aligned_cols=101  Identities=19%  Similarity=0.335  Sum_probs=76.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.....                                          
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR------------------------------------------  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc------------------------------------------
Confidence            479999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql  267 (584)
                       .          ++ ..+.+.+.+.+++.|++++.+++++++.  ++  .|++.+|+++.|+.||-|.|..+  .+.+.+
T Consensus       184 -~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  247 (408)
T 2gqw_A          184 -A----------AP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLANDALARAA  247 (408)
T ss_dssp             -T----------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEECCHHHHHH
T ss_pred             -c----------cC-HHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCccHHHHHhC
Confidence             0          00 1234455667778899999999999987  34  66777899999999999999764  356665


Q ss_pred             cC
Q 007945          268 RS  269 (584)
Q Consensus       268 ~~  269 (584)
                      +.
T Consensus       248 gl  249 (408)
T 2gqw_A          248 GL  249 (408)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.39  E-value=0.00017  Score=79.54  Aligned_cols=109  Identities=11%  Similarity=0.032  Sum_probs=68.6

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          111 FDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .||+|||| ++|+++|..|+++  |++|+|||+.+..+....      .+..+              +...+..      
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~------~l~~~--------------~~~~~~~------   55 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC------GLPYH--------------ISGEIAQ------   55 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG------GHHHH--------------HTSSSCC------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc------CchHH--------------hcCCcCC------
Confidence            48999996 5799999999987  899999999976442110      01110              0000000      


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCC
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~  260 (584)
                       ...+.        .+      .+...+.+.|++++.+++|++++.+...+++.. .+|.  ++.++.||-|+|..
T Consensus        56 -~~~~~--------~~------~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           56 -RSALV--------LQ------TPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             -GGGGB--------CC------CHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -hHHhh--------cc------CHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence             00000        00      011112235889999999999987777777664 2343  79999999999984

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.37  E-value=0.0011  Score=72.27  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=75.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-+                               .            
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  214 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------  214 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-------------------------------c------------
Confidence            69999975 799999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~-i~ArlVIdADG~~S~v  263 (584)
                                 +|+ .+.+.+.+.+++.|++++.+++++++..++++ +.|.+.+|++ +.++.||-|.|.....
T Consensus       215 -----------~d~-~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          215 -----------FDE-SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             -----------cch-hhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                       011 23345566777889999999999999876543 7788888887 9999999999987654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.37  E-value=0.00085  Score=72.36  Aligned_cols=97  Identities=12%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+...+                               .            
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  212 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-------------------------------T------------  212 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-------------------------------c------------
Confidence            68999975 799999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a-~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~ArlVIdADG~~S~v  263 (584)
                                 +| ..+.+.+.+.+ ++.|++++.+++++++..+++++.|++.  +|  +++.++.||-|.|..+..
T Consensus       213 -----------~d-~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          213 -----------LD-EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             -----------CC-HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence                       01 12345566677 7889999999999999877666777775  56  679999999999987653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.34  E-value=0.0016  Score=70.30  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=80.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          111 FDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      -.|+||||| .|+-+|..|++. |.+|.++++.+....                                          
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~------------------------------------------  197 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP------------------------------------------  197 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc------------------------------------------
Confidence            379999965 799999999999 999999998742110                                          


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQ  266 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rq  266 (584)
                      . .          .+ ..+.+.+.+.+++.|++++.+++++++..+++.++|.+.+|+++.|+.||-|.|..+  .+.+.
T Consensus       198 ~-~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~  265 (472)
T 3iwa_A          198 G-F----------TS-KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARD  265 (472)
T ss_dssp             T-T----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHH
T ss_pred             c-c----------cC-HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHh
Confidence            0 0          01 134456667778889999999999999876777888888899999999999999864  46665


Q ss_pred             hcC
Q 007945          267 IRS  269 (584)
Q Consensus       267 l~~  269 (584)
                      ++.
T Consensus       266 ~gl  268 (472)
T 3iwa_A          266 AGL  268 (472)
T ss_dssp             HTC
T ss_pred             CCc
Confidence            543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.34  E-value=0.00055  Score=74.24  Aligned_cols=98  Identities=15%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-..                                          
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------  223 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------------------------------  223 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC----CcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE----GKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~----G~~i~ArlVIdADG~~S~v  263 (584)
                                  ++ ..+.+.+.+.+++.|++++.++++.++..+++++.|++.+    |+++.++.||-|.|..+..
T Consensus       224 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          224 ------------AD-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ------------SC-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             ------------cC-HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence                        00 1233455666777899999999999998887777788776    7789999999999987654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.33  E-value=0.0011  Score=72.20  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr----~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .|+||||| +|+-+|..|++    .|.+|.++++.+..-                                         
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~-----------------------------------------  220 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-----------------------------------------  220 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-----------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc-----------------------------------------
Confidence            69999975 79999998876    589999998764100                                         


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VV  264 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~  264 (584)
                        ..      .    ++ ..+.+.+.+.+++.|++++.+++++++..+++.+.|++.+|+++.|++||-|.|..+.  +.
T Consensus       221 --~~------~----l~-~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~  287 (493)
T 1m6i_A          221 --GK------I----LP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA  287 (493)
T ss_dssp             --TT------T----SC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTH
T ss_pred             --cc------c----CC-HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHH
Confidence              00      0    00 1334556677788899999999999998777777888889999999999999998754  55


Q ss_pred             hHhc
Q 007945          265 KQIR  268 (584)
Q Consensus       265 rql~  268 (584)
                      +.++
T Consensus       288 ~~~g  291 (493)
T 1m6i_A          288 KTGG  291 (493)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            5554

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.33  E-value=0.00096  Score=72.04  Aligned_cols=98  Identities=11%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.....                                           
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  216 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV-------------------------------------------  216 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-------------------------------------------
Confidence            69999975 7999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEE-----cCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLL-----AEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~-----~~G~~i~ArlVIdADG~~S~v  263 (584)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|++     .+++++.++.||-|.|..+..
T Consensus       217 ~----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          217 G----------ID-MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             S----------CC-HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             c----------cC-HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence            0          01 123345666777889999999999999877666 77764     346789999999999987653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.33  E-value=0.0013  Score=70.60  Aligned_cols=97  Identities=19%  Similarity=0.060  Sum_probs=75.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-..                                          
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK------------------------------------------  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                       .          ++ ..+.+.+.+.+++.|++++.+++++++...++++.|.+.++ ++.|+.||-|.|....
T Consensus       186 -~----------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          186 -Y----------FD-KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             -T----------CC-HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             -c----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence             0          01 12345666777888999999999999987777787887666 8999999999998653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.32  E-value=0.0003  Score=76.67  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=35.4

Q ss_pred             hCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       217 ~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +.|++++.+++|++++.+..  +|++.+|+++.++.||-|+|...
T Consensus       102 ~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p  144 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTP  144 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred             cCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence            46789999999999876544  56677888999999999999754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.29  E-value=0.00016  Score=78.61  Aligned_cols=55  Identities=15%  Similarity=0.104  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeE-EEEEcCCcEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICT-YENAA-VLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv-~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .|-+.|.+.+++.|++++.+++|+++.. +++.+ .|++.+|++++|+.||.|.|..
T Consensus       257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4566788888899999999999999988 44444 4788888899999999999987

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.29  E-value=0.0013  Score=70.88  Aligned_cols=95  Identities=23%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-+                                            
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------------  213 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--------------------------------------------  213 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--------------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--------------------------------------------
Confidence            68999975 699999999999999999998741100                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..+++.+.|.+. +.++.++.||-|.|..+..
T Consensus       214 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          214 -----------ED-PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             -----------CC-HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence                       00 123455666777889999999999999887777777775 5689999999999988653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.29  E-value=0.00085  Score=72.99  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC---CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          111 FDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~---GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      -.|+||||| +|+-+|..|++.   |.+|.++|+.+..-+                                        
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~----------------------------------------  227 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR----------------------------------------  227 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc----------------------------------------
Confidence            379999975 799999999998   999999998752110                                        


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                        .            +| ..+.+.+.+.+++.|++++.+++++++..+++ .+.|++.+|+++.|+.||-|.|..+..
T Consensus       228 --~------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          228 --G------------FD-SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             --T------------SC-HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             --c------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence              0            01 12345566677788999999999999987654 477888888899999999999987654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.27  E-value=0.0022  Score=68.75  Aligned_cols=96  Identities=18%  Similarity=0.265  Sum_probs=73.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-..                                           
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  187 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK-------------------------------------------  187 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-------------------------------------------
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-------------------------------------------
Confidence            69999975 7999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++..+++.++ |.+ +|+++.|+.||-|.|....
T Consensus       188 ~----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          188 Y----------FD-KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             T----------SC-HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             h----------hh-hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            0          00 12345566677788999999999999987666665 444 7889999999999998754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.26  E-value=0.0016  Score=70.02  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-+                               .           
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-----------  209 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-------------------------------N-----------  209 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T-----------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c-----------
Confidence            369999975 799999999999999999998752110                               0           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CC--cEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G--~~i~ArlVIdADG~~S~  262 (584)
                                  ++ ..+.+.+.+.+++.|++++.+++++++..+++++.|++. +|  +++.++.||-|.|..+.
T Consensus       210 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          210 ------------ED-ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             ------------SC-HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             ------------cC-HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence                        00 122344556667789999999999999877666777775 56  67999999999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.0021  Score=69.67  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+....                                          . 
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  236 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG------------------------------------------G-  236 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS------------------------------------------S-
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc------------------------------------------c-
Confidence            68999975 799999999999999999987752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--cEEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G--~~i~ArlVIdADG~~S~v  263 (584)
                                 ++ ..+.+.+.+.+++.|++++.+++++++..+++++.|.+.+   |  +++.++.||-|.|.....
T Consensus       237 -----------~d-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          237 -----------MD-GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             -----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence                       00 1234555667778899999999999999888888777753   4  579999999999987543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.00021  Score=75.73  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=32.1

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~  144 (584)
                      ..++||+||||| +|+++|..|+++ |++|+|+|+++..
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            346999999976 699999999998 9999999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.22  E-value=0.0023  Score=70.52  Aligned_cols=102  Identities=19%  Similarity=0.306  Sum_probs=77.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++++.+..-..                                           
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  189 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-------------------------------------------  189 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-------------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-------------------------------------------
Confidence            79999975 7999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-------------------CCeEEEEEcCCcEEEcc
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-------------------ENAAVLLLAEGKILSSH  251 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-------------------~~gv~V~~~~G~~i~Ar  251 (584)
                                 .+ ..+.+.+.+.+++.|++++.++++.++..+                   ++.+.+.+.+|+++.|+
T Consensus       190 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D  257 (565)
T 3ntd_A          190 -----------VD-REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD  257 (565)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEES
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcC
Confidence                       00 123345566677789999999999999873                   56777888889999999


Q ss_pred             EEEEecCCChH--HHhHhc
Q 007945          252 LIIDAMGNFSP--VVKQIR  268 (584)
Q Consensus       252 lVIdADG~~S~--v~rql~  268 (584)
                      .||-|.|..+.  +.+.++
T Consensus       258 ~vi~a~G~~p~~~l~~~~g  276 (565)
T 3ntd_A          258 LLIMAIGVRPETQLARDAG  276 (565)
T ss_dssp             EEEECSCEEECCHHHHHHT
T ss_pred             EEEECcCCccchHHHHhCC
Confidence            99999998653  555554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.21  E-value=0.0007  Score=72.95  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.....                                          
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  215 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------------------------------  215 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G--~~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+++.|++++.++++.++..+++++.|++.   +|  +++.++.||-|.|..+..
T Consensus       216 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          216 ------------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             ------------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             ------------cc-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence                        00 123445566777889999999999999766666777764   44  689999999999987653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.20  E-value=0.002  Score=70.10  Aligned_cols=97  Identities=21%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhC---CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          112 DVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~---GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|+||||| .|+-+|..|++.   |.+|.++|+.+..-.                                         
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-----------------------------------------  231 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-----------------------------------------  231 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-----------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-----------------------------------------
Confidence            69999975 799999999998   999999998752110                                         


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCChHH
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S~v  263 (584)
                       .            +|+ .+.+.+.+.+++.|++++.+++++++..+++ .+.|++.+|+++.++.||-|.|..+..
T Consensus       232 -~------------~d~-~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          232 -G------------FDE-TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             -T------------SCH-HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             -c------------cCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence             0            011 2334556677788999999999999987654 477888888899999999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.20  E-value=0.0017  Score=70.38  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .-+|+||||| .|+-+|..|++.|.+|.++|+.+....                               .          
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~----------  224 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-------------------------------I----------  224 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-------------------------------S----------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-------------------------------c----------
Confidence            3579999976 699999999999999999998742110                               0          


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                                   ++ ..+.+.+.+.+++.|++++.+++++++..+ +.+ .|.+ ++.++.|+.||-|.|..+.
T Consensus       225 -------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          225 -------------YD-GDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DKGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             -------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TTEEEECSEEEECSCEEES
T ss_pred             -------------CC-HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CCCEEEcCEEEECcCCCcC
Confidence                         00 123455667778889999999999998764 444 3555 4568999999999998754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.19  E-value=0.00024  Score=77.65  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             CCccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTL  143 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr-~GlrVlLIEr~~~  143 (584)
                      .+||+|||||| +|+.+|..|++ .|++|+|||+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            37999999965 79999999997 7899999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.13  E-value=0.0009  Score=72.06  Aligned_cols=96  Identities=21%  Similarity=0.239  Sum_probs=70.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.++|+.+.....                                          
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  209 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------------------------------  209 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            369999965 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~v  263 (584)
                                  .+ ..+.+.+.+.+++.|++++.++++++++.  +.++++..+|  +++.++.||-|.|..+..
T Consensus       210 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          210 ------------YD-SELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             ------------SC-HHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                        00 12234455566778999999999999865  3466664456  689999999999987643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.08  E-value=0.00044  Score=73.10  Aligned_cols=42  Identities=7%  Similarity=-0.008  Sum_probs=36.0

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .+.+++.+++|++|..++++++|++.+|+ ++||.||-|.+..
T Consensus       216 l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          216 LEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             SSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             hcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            45678899999999988888888887775 9999999998875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.05  E-value=0.0031  Score=64.93  Aligned_cols=102  Identities=19%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....+                              .+++         
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~------------------------------~~d~---------  208 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP------------------------------DADP---------  208 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------C---------
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC------------------------------CCCC---------
Confidence            79999965 7999999999999999999987521100                              0000         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEE-ccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILS-SHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~-ArlVIdADG~~S  261 (584)
                      .+.        .+ ..+.+.+.+.+.+.| ++++.++++.++..+++.+.|++.+|+++. ++.||-|.|...
T Consensus       209 ~~~--------~~-~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          209 SVR--------LS-PYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             TTS--------CC-HHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCG
T ss_pred             Ccc--------CC-HHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCC
Confidence            000        01 133455566667786 999999999999877777788888887665 588888888764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.04  E-value=0.003  Score=68.60  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-..                                          
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  232 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG------------------------------------------  232 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh------------------------------------------
Confidence            369999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                       .          ++ ..+.+.+.+.+++.|++++.+++++++.. ++.+ .|.+ +|+++.++.||-|.|....
T Consensus       233 -~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          233 -Y----------YD-RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             -T----------SC-HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             -H----------HH-HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence             0          01 12345566777888999999999999875 3433 3555 6788999999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.03  E-value=0.0042  Score=67.55  Aligned_cols=96  Identities=21%  Similarity=0.170  Sum_probs=73.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.....                                          
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------------------------------------------  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------------------------------
Confidence            369999965 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEccEEEEecCCChH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~ArlVIdADG~~S~  262 (584)
                                  .+ ..+.+.+.+.+++. ++++.+++++++..++++++|++.  +|  +++.++.||-|.|....
T Consensus       213 ------------~d-~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          213 ------------QD-EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             ------------CC-HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             ------------CC-HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence                        00 02334455555666 999999999999888888888875  56  68999999999998754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.03  E-value=0.0041  Score=68.65  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .++||||| +|+=+|..+++.|.+|+++++....+                                           . 
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~-------------------------------------------~-  260 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR-------------------------------------------G-  260 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST-------------------------------------------T-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc-------------------------------------------c-
Confidence            69999976 79999999999999999998643100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~  264 (584)
                                 .|+ .+-+.+.+.+++.|+.++.++.+..+...++.+.|.+.++.++.++.|+-|.|+...+-
T Consensus       261 -----------~D~-ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          261 -----------FDQ-QCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred             -----------cch-hHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence                       011 23345566777889999999999999999999999998888999999999999876553

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.01  E-value=0.00044  Score=74.93  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||+||||| .|+++|+.|+++|++|+|+|++..+|
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            5899999976 69999999999999999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.01  E-value=0.0053  Score=61.76  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~  183 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E  183 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC------------------------------------------C
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc------------------------------------------C
Confidence            379999965 799999999999999999997642100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcC----C--cEEEccEEEEecCCCh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE----G--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~----G--~~i~ArlVIdADG~~S  261 (584)
                                     ..+.+.+.+.+.+.|++++.+++++++..+++.+. |.+.+    |  +++.++.||-|.|...
T Consensus       184 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          184 ---------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             ---------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             ---------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence                           12234455667788999999999999987664432 55543    4  5799999999988653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.98  E-value=0.00043  Score=75.39  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||+|||| ++|+++|..|+++|++|+||||++..|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   44 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGT   44 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            599999996 568888999999999999999987555

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.96  E-value=0.00023  Score=76.14  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      .||||||| +|+++|..|++.+  ++|+|||+++...    +  .+ .+..+ -.|..+.             ..+.+  
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~----~--~p-~l~~v-~~g~~~~-------------~~i~~--   60 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG----F--TP-AFPHL-AMGWRKF-------------EDISV--   60 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE----C--GG-GHHHH-HHTCSCG-------------GGSEE--
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc----c--Cc-cHHHH-hcCCCCH-------------HHhhh--
Confidence            59999965 7889998999765  8999999886321    1  00 11111 1121111             00110  


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                            +      +         .+.+.+.|++++.+ +|++++.+.  -+|++++|+++..|.||-|+|...
T Consensus        61 ------~------~---------~~~~~~~gv~~i~~-~v~~Id~~~--~~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           61 ------P------L---------APLLPKFNIEFINE-KAESIDPDA--NTVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             ------E------S---------TTTGGGGTEEEECS-CEEEEETTT--TEEEETTCCEEECSEEEECCCCEE
T ss_pred             ------c------H---------HHHHHHCCcEEEEe-EEEEEECCC--CEEEECCCCEEECCEEEEeCCCCc
Confidence                  0      0         00122356777655 688876544  367788999999999999999753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.95  E-value=0.00051  Score=75.75  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .+||+||||| ++|+++|..|++.|++|+|||+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3699999996 5799999999999999999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.93  E-value=0.00072  Score=71.80  Aligned_cols=37  Identities=35%  Similarity=0.547  Sum_probs=32.2

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+||+||||| +|+++|..|+++|++|+|+|+++..|
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            36999999965 69999999999999999999987543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=96.91  E-value=0.00078  Score=72.11  Aligned_cols=57  Identities=16%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .+-+.|.+.+++.|++++.+++|+++..+++++++...+|++++|+.||-|.|..+.
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            566778888888899999999999999888877633357889999999999999975

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.91  E-value=0.00053  Score=74.89  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          220 GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       220 ~~i~~~t~v~~v~~~-~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      ++|+.+++|++|..+ ++++.|++.+|++++|+.||-|.+..
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~  256 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQS  256 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHH
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHH
Confidence            479999999999886 56789999899899999999998654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.90  E-value=0.0008  Score=72.65  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNF  260 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~  260 (584)
                      |-+.|.+++.+  ++|+.+++|++|..++++++|++.+|   ++++||.||-|....
T Consensus       241 l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          241 IYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            44455554421  68999999999999999999988776   689999999998653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.86  E-value=0.00073  Score=75.97  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..|||||||| ++|+++|..|+++|++|+|||+.+..+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            3699999996 579999999999999999999988654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.83  E-value=0.0085  Score=64.50  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------------------------------  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------------------
Confidence            369999965 799999999999999999998752110                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~S~v  263 (584)
                       .          .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|.+.++   +++.++.||-|.|.....
T Consensus       218 -~----------~~-~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          218 -A----------VD-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             -T----------SC-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             -c----------cC-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence             0          00 12345556677788999999999999988887888887654   679999999999986543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=96.83  E-value=0.00076  Score=70.61  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||+||||| +|+++|..|+++|++|+|+|+++..|
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            3799999975 69999999999999999999987543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.82  E-value=0.00065  Score=75.66  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKG-LRVAIVERNTL  143 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~G-lrVlLIEr~~~  143 (584)
                      .+||+||||| ++|+++|..|++.| ++|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            3699999996 57999999999987 89999999876

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.81  E-value=0.0088  Score=63.92  Aligned_cols=131  Identities=11%  Similarity=0.046  Sum_probs=76.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcc--cc---cCCHHHHHHHHHcCCCcccccchhhhcccCCc
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQ--EW---NISRKELLELVESGILVEDDIDEATATKFNPN  182 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r--~w---~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~  182 (584)
                      -.|+||||| .|+=+|..|++.  |.+|.+++|.+...+..  .+   -.++...+.+..+.   . +....+....   
T Consensus       228 ~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~---~-~~~~~~~~~~---  300 (463)
T 3s5w_A          228 MKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSRE---H-AERERLLREY---  300 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSC---H-HHHHHHHHHT---
T ss_pred             CeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCC---H-HHHHHHHHHh---
Confidence            479999976 699999999988  99999999987432110  00   01121112221111   0 0000000000   


Q ss_pred             eeeecCCCcccccccccceeCHH----HHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEccE
Q 007945          183 RCGFEGKGEIWVEDILNLGVSPA----KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHL  252 (584)
Q Consensus       183 ~v~f~~~~~l~~~~~l~~~vd~~----~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~--~i~Arl  252 (584)
                            ....+      -.++.+    .......+++.. .|++++.+++|+++..+++++.|++.   +|+  ++.+++
T Consensus       301 ------~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~  368 (463)
T 3s5w_A          301 ------HNTNY------SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDA  368 (463)
T ss_dssp             ------GGGTS------SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESE
T ss_pred             ------hccCC------CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCE
Confidence                  00000      012222    122233334333 48899999999999988888888876   565  499999


Q ss_pred             EEEecCCC
Q 007945          253 IIDAMGNF  260 (584)
Q Consensus       253 VIdADG~~  260 (584)
                      ||-|.|..
T Consensus       369 Vv~AtG~~  376 (463)
T 3s5w_A          369 VILATGYE  376 (463)
T ss_dssp             EEECCCEE
T ss_pred             EEEeeCCC
Confidence            99999975

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.79  E-value=0.0065  Score=65.28  Aligned_cols=97  Identities=12%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..+++.|.+|.++++.+..-.                                          .
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------------------------------------------~  208 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------------------------------------------R  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------c
Confidence            469999965 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEE-EcCCcEEEccEEEEecCCChHH
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLL-LAEGKILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~-~~~G~~i~ArlVIdADG~~S~v  263 (584)
                                  ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|+ +.+|+ +.|+.||-|.|..+..
T Consensus       209 ------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          209 ------------FD-QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence                        01 123456667778889999999999999887665 5788 77887 9999999999986543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.79  E-value=0.0055  Score=65.56  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=66.6

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      -|||||| ++|+++|..|++.|  .+|+|||+.+...-.++      -+..+. .+..             ..       
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~------~l~~~~-~~~~-------------~~-------   54 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------ALPYVI-GEVV-------------ED-------   54 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG------GHHHHH-TTSS-------------CC-------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc------hhHHHH-cCCc-------------cc-------
Confidence            4899996 57999999999888  57999999864321111      111110 0000             00       


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~~i~ArlVIdADG~~S  261 (584)
                      ..     .  .+...+..       ...+.+++++.+++|++++.+...+.+....   +.++.++.||-|+|...
T Consensus        55 ~~-----~--~~~~~~~~-------~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           55 RR-----Y--ALAYTPEK-------FYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA  116 (437)
T ss_dssp             GG-----G--TBCCCHHH-------HHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred             hh-----h--hhhcCHHH-------HHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence            00     0  01112221       1234588999999999987776666665432   34799999999999764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.75  E-value=0.003  Score=65.95  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=71.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+....                                       +   
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---  181 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG---------------------------------------L---  181 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT---------------------------------------C---
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc---------------------------------------C---
Confidence            369999965 799999999999999999998752110                                       0   


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql  267 (584)
                                   + ..+.+.+.+.+++.|++++.+++++++.  .++  |++.+|+ +.++.||-|.|..+.  +.+.+
T Consensus       182 -------------~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~~--v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~  242 (367)
T 1xhc_A          182 -------------D-EELSNMIKDMLEETGVKFFLNSELLEAN--EEG--VLTNSGF-IEGKVKICAIGIVPNVDLARRS  242 (367)
T ss_dssp             -------------C-HHHHHHHHHHHHHTTEEEECSCCEEEEC--SSE--EEETTEE-EECSCEEEECCEEECCHHHHHT
T ss_pred             -------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEE--eeE--EEECCCE-EEcCEEEECcCCCcCHHHHHhC
Confidence                         0 1233455666777899999999999986  333  5666777 999999999997654  45554


Q ss_pred             c
Q 007945          268 R  268 (584)
Q Consensus       268 ~  268 (584)
                      +
T Consensus       243 g  243 (367)
T 1xhc_A          243 G  243 (367)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.75  E-value=0.0083  Score=64.83  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=70.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.....                                           . 
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~-  224 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR-------------------------------------------G-  224 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST-------------------------------------------T-
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc-------------------------------------------c-
Confidence            68999965 79999999999999999998742100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCc-----EEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGK-----ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~-----~i~ArlVIdADG~~S~  262 (584)
                                 +| ..+.+.+.+.+++.|++++.++++.++..+++ .+.|++.++.     ++.++.||-|.|....
T Consensus       225 -----------~d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          225 -----------FD-QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence                       00 12334556667788999999999999987655 4667766543     7999999999998643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.74  E-value=0.00056  Score=75.43  Aligned_cols=35  Identities=34%  Similarity=0.626  Sum_probs=31.0

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      .+||+|||||| +|+++|..|++ |.+|+|||+.+..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            36999999965 79999999999 9999999999753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.72  E-value=0.01  Score=64.02  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-.                                          .
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~  225 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR------------------------------------------S  225 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------T
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc------------------------------------------c
Confidence            369999975 799999999999999999998652110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcC---C----cEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAE---G----KILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~---G----~~i~ArlVIdADG~~  260 (584)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..++++  +.|.+.+   |    +++.++.||-|.|..
T Consensus       226 ------------~d-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~  292 (478)
T 3dk9_A          226 ------------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRV  292 (478)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccc
Confidence                        00 123345566677789999999999999877665  5677654   2    679999999999986


Q ss_pred             hH
Q 007945          261 SP  262 (584)
Q Consensus       261 S~  262 (584)
                      ..
T Consensus       293 p~  294 (478)
T 3dk9_A          293 PN  294 (478)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.72  E-value=0.004  Score=65.32  Aligned_cols=102  Identities=20%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          112 DVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      -|||||| ++|+++|..|+++|  ++|+|||+++.....   ..+.   ..+  .|..+             .       
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~---p~~~---~v~--~g~~~-------------~-------   55 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC---YMSN---EVI--GGDRE-------------L-------   55 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS---TTHH---HHH--HTSSC-------------G-------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc---cCHH---HHh--cCCCC-------------H-------
Confidence            5999996 47888888888764  699999988632110   0110   000  01110             0       


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       ..+        ..+.+        .+.+.|++++.+ +|++++.+.  -+|.+.+|.++..+.||-|+|...
T Consensus        56 -~~~--------~~~~~--------~~~~~gv~~i~~-~v~~id~~~--~~v~~~~g~~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           56 -ASL--------RVGYD--------GLRAHGIQVVHD-SALGIDPDK--KLVKTAGGAEFAYDRCVVAPGIDL  108 (401)
T ss_dssp             -GGG--------EECSH--------HHHHTTCEEECS-CEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             -HHH--------hhCHH--------HHHHCCCEEEEe-EEEEEEccC--cEEEecccceeecceeeeccCCcc
Confidence             000        01111        223467887654 677775443  456777899999999999999764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.71  E-value=0.0057  Score=67.86  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=74.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  225 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP------------------------------------------P-  225 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------T-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc------------------------------------------c-
Confidence            69999975 799999999999999999998652110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHhc
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR  268 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql~  268 (584)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..++++  |.+.+|+++.++.||-|.|..+.  +.+.++
T Consensus       226 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g  291 (588)
T 3ics_A          226 -----------ID-YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGAG  291 (588)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECCHHHHHTT
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCChHHHHhcC
Confidence                       00 123455566777889999999999998655443  56678889999999999998654  455543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.69  E-value=0.0015  Score=68.74  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~-~~~~  145 (584)
                      .+||+||||| +|+++|..|+++|++|+|+|++ ...|
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            5899999975 6999999999999999999998 5443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.61  E-value=0.0079  Score=60.73  Aligned_cols=89  Identities=18%  Similarity=0.034  Sum_probs=65.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            369999965 799999999999999999997752110                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcC-----CcEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAE-----GKILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~~-----G~~i~ArlVIdADG~~  260 (584)
                                        .+.+.+++.+. |++++.++.+.++..+++++. |.+.+     ++++.++.||-|.|..
T Consensus       211 ------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          211 ------------------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             ------------------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred             ------------------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence                              01123344444 899999999999987766443 55544     4579999999998865

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.59  E-value=0.014  Score=59.22  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~------------------------------------------~  190 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA------------------------------------------H  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS------------------------------------------C
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc------------------------------------------c
Confidence            379999975 799999999999999999998752110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEccEEEEecCCCh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G--~~i~ArlVIdADG~~S  261 (584)
                                     ..+.+.+.+.+++.|++++.++++.++..++....|.+.   +|  +++.++.||-|.|..+
T Consensus       191 ---------------~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2zbw_A          191 ---------------EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYIT  252 (335)
T ss_dssp             ---------------HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             ---------------HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCC
Confidence                           011233455566779999999999999774332245554   56  5799999999888653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.55  E-value=0.002  Score=72.41  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEEcCCcEEEccEEEEecCC
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~gv~-V~~~~G~~i~ArlVIdADG~  259 (584)
                      |-+.|.+.+++.|++++.+++|.+|..++  +.++ |.+.+|++++|+.||.....
T Consensus       380 L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~  435 (650)
T 1vg0_A          380 LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY  435 (650)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGG
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhh
Confidence            34566677888899999999999998887  4454 44567999999999975443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.54  E-value=0.0029  Score=69.10  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=28.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ...||||||| +|+++|..|++.+++|+||||++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            4579999975 68888889999999999999885

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.53  E-value=0.0014  Score=73.06  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=30.3

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNT  142 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~  142 (584)
                      .+||+|||||| +|+++|..|++. |++|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            36999999965 799999999974 89999999987

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.47  E-value=0.002  Score=69.60  Aligned_cols=40  Identities=8%  Similarity=0.033  Sum_probs=34.6

Q ss_pred             EEEeCceEEEEEEeCCeEEEEEcCCc----EEEccEEEEecCCC
Q 007945          221 VIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNF  260 (584)
Q Consensus       221 ~i~~~t~v~~v~~~~~gv~V~~~~G~----~i~ArlVIdADG~~  260 (584)
                      +|+.+++|++|..+++++.|++.+|+    +++||.||-|.+..
T Consensus       254 ~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred             ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence            79999999999998888999887654    58999999998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.43  E-value=0.0023  Score=69.04  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||+|||| ++|+++|..|+++|++|+|+|+.+..+
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            589999996 579999999999999999999987543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.41  E-value=0.022  Score=61.55  Aligned_cols=95  Identities=19%  Similarity=0.245  Sum_probs=70.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.....     .                                       
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~-----~---------------------------------------  222 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR-----G---------------------------------------  222 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-----T---------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc-----c---------------------------------------
Confidence            69999975 79999999999999999998753100     0                                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEEcC---Cc--EEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLAE---GK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~V~~~~---G~--~i~ArlVIdADG~~S~  262 (584)
                                 +| ..+.+.+.+.+++.|++++.++.+.++...+ +.+.|++.+   |+  ++.++.||-|.|....
T Consensus       223 -----------~d-~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          223 -----------FD-QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             -----------CC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence                       00 1233455666778899999999999997744 446666644   54  5899999999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.37  E-value=0.011  Score=60.82  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          ..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------~~  202 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG------------------------------------------HG  202 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS------------------------------------------CS
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC------------------------------------------CH
Confidence            69999965 799999999999999999998752110                                          00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEE--cCC--cEEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLL--AEG--KILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~--~~G--~~i~ArlVIdADG~~S  261 (584)
                                     .+.+.+.+..++.|++++.+++++++..+++.+ .|.+  .+|  +++.++.||-|.|..+
T Consensus       203 ---------------~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p  263 (360)
T 3ab1_A          203 ---------------KTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKS  263 (360)
T ss_dssp             ---------------HHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCC
T ss_pred             ---------------HHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCC
Confidence                           011223334456789999999999998876643 3444  366  5799999999998653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=96.34  E-value=0.0029  Score=66.60  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=31.6

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ++||+||||| +|+++|..|+++|++|+|+|++...+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999975 69999999999999999999987643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.32  E-value=0.033  Score=55.64  Aligned_cols=89  Identities=18%  Similarity=0.067  Sum_probs=63.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+...      ..                                    
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------~~------------------------------------  181 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR------CA------------------------------------  181 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC------SC------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC------CC------------------------------------
Confidence            479999965 79999999999999999998764210      00                                    


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHH-hCCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFI-SLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~-~~G~~i~~~t~v~~v~~~~~gv-~V~~~---~G~--~i~ArlVIdADG~~  260 (584)
                                    +     .+.+++. +.|++++.+++++++..+++++ .|.+.   +|+  ++.++.||-|.|..
T Consensus       182 --------------~-----~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  240 (311)
T 2q0l_A          182 --------------P-----ITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYD  240 (311)
T ss_dssp             --------------H-----HHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             --------------H-----HHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence                          0     0122333 3588999999999998775654 35554   565  79999999888754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.30  E-value=0.0098  Score=63.61  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=67.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..+++.|.+|.|+|+.+.....                               +         ..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-------------------------------~---------d~  188 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-------------------------------M---------DA  188 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-------------------------------S---------CG
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-------------------------------c---------cc
Confidence            69999965 7999999999999999999987521100                               0         00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                                     .+.+.+.+.+.+.|++++.++++++++  .+  .|.+++|+++.++.||-|.|...
T Consensus       189 ---------------~~~~~~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          189 ---------------DMNQPILDELDKREIPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             ---------------GGGHHHHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             ---------------hhHHHHHHHhhccceEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEeceec
Confidence                           011334556677899999999998863  33  36677899999999999999764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.28  E-value=0.0017  Score=72.08  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             CccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr-~GlrVlLIEr~~~~  144 (584)
                      +||+|||||| +|+++|..|++ .|++|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5999999965 79999999998 79999999998643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.23  E-value=0.018  Score=61.46  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+.....                                           
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR-------------------------------------------  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-------------------------------------------
Confidence            79999975 7999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHhc
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR  268 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql~  268 (584)
                      .          ++ ..+.+.+.+.+++. ++++.++.+.++..++ .+.+...+++++.++.||-|.|...  .+.+.++
T Consensus       187 ~----------~~-~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~g  253 (449)
T 3kd9_A          187 S----------FD-KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKPNIELAKQLG  253 (449)
T ss_dssp             T----------SC-HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEECCHHHHHTT
T ss_pred             h----------cC-HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCC
Confidence            0          00 12345556666677 9999999999986543 4433345778999999999999864  4555554

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.17  E-value=0.0042  Score=67.43  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~~~  145 (584)
                      .+||+||||| +|+++|..|+++| .+|+|+|+.+..|
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            5899999975 6999999999998 7999999987543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.15  E-value=0.0045  Score=70.81  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             CCCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          107 AVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       107 ~~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      .+..+||+|||| ++|+++|..|+++|++|+|||+.+..
T Consensus       386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            344689999996 57999999999999999999998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.15  E-value=0.0041  Score=66.86  Aligned_cols=55  Identities=5%  Similarity=0.038  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhC--------CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISL--------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~--------G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .+.+.|.+.+.+.        |++|+.+++|++|..++++++|++.+|++++|+.||.|.+..
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  269 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG  269 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence            3445555555443        678999999999999988999999899999999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.09  E-value=0.0047  Score=69.81  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             CCCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          107 AVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       107 ~~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+..+||+|||| ++|+++|..|+++|++|+|||+.+..+
T Consensus       370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~g  409 (671)
T 1ps9_A          370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG  409 (671)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            344689999996 579999999999999999999986543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.00  E-value=0.037  Score=59.38  Aligned_cols=95  Identities=14%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-..    .                                      
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----~--------------------------------------  211 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT----L--------------------------------------  211 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT----S--------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC----C--------------------------------------
Confidence            69999975 7999999999999999999987521100    0                                      


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEEc--CCc--EEEccEEEEecCCChHH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLA--EGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~V~~~--~G~--~i~ArlVIdADG~~S~v  263 (584)
                                 +++ .+.+.+.+.+.   ++++.+++++++..++ +++.|.+.  +|+  ++.++.||-|.|.....
T Consensus       212 -----------~d~-~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          212 -----------EDQ-DIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             -----------CCH-HHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             -----------CCH-HHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence                       000 11222333332   8899999999998877 78888887  565  89999999999986543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.99  E-value=0.0047  Score=67.46  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .+||+|||||| +|+++|..|++.|++|+|||+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            36999999965 69999999999999999999885

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.97  E-value=0.053  Score=53.91  Aligned_cols=90  Identities=17%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+|+||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  184 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA-------------------------------------------  184 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------------------------------------------
Confidence            369999965 799999999999999999987642100                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~ArlVIdADG~~  260 (584)
                                   ++..+    .+.+++.|++++.++++.++..+++.+. |++.  +|+  ++.++.||-|.|..
T Consensus       185 -------------~~~~~----~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          185 -------------APSTV----EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             -------------CHHHH----HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred             -------------CHHHH----HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence                         00111    1122467899999999999988775432 4443  675  79999999888854

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.95  E-value=0.0052  Score=68.49  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=31.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr-~GlrVlLIEr~~~~  144 (584)
                      +||+|||||| +|+++|..|++ .|++|+|||+....
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            6999999965 79999999999 89999999998653

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.92  E-value=0.0046  Score=67.45  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +||+|||||| +|+++|..|++.|++|+|||+...
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            6999999965 699999999999999999998873

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.92  E-value=0.076  Score=58.89  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++....+.                                            
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------------  323 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRSILLRG--------------------------------------------  323 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCc--------------------------------------------
Confidence            69999975 799999999999999999997621000                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe------C---CeEEEE--EcCCcEEE--ccEEEEec
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY------E---NAAVLL--LAEGKILS--SHLIIDAM  257 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~------~---~gv~V~--~~~G~~i~--ArlVIdAD  257 (584)
                                 +++ .+.+.+.+.+++.|++++.++.++++...      +   +.++++  ..+|+++.  ++.||-|.
T Consensus       324 -----------~d~-~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~  391 (598)
T 2x8g_A          324 -----------FDQ-QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV  391 (598)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred             -----------CCH-HHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence                       000 12233445566789999999988887543      2   445454  35676655  99999999


Q ss_pred             CCChHH
Q 007945          258 GNFSPV  263 (584)
Q Consensus       258 G~~S~v  263 (584)
                      |.....
T Consensus       392 G~~p~~  397 (598)
T 2x8g_A          392 GREPQL  397 (598)
T ss_dssp             CEEECG
T ss_pred             CCcccc
Confidence            987543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.88  E-value=0.0071  Score=68.30  Aligned_cols=40  Identities=10%  Similarity=0.046  Sum_probs=35.1

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcC------CcEEEccEEEEecC
Q 007945          219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG  258 (584)
Q Consensus       219 G~~i~~~t~v~~v~~~~~gv~V~~~~------G~~i~ArlVIdADG  258 (584)
                      +..|+.+++|++|..++++++|++.+      +++++||.||-|..
T Consensus       410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          410 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  455 (662)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred             cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence            56899999999999999999998865      56899999998875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.85  E-value=0.076  Score=57.94  Aligned_cols=95  Identities=14%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++++.....                                           . 
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~-------------------------------------------~-  247 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------------------------------------------G-  247 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-------------------------------------------T-
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc-------------------------------------------c-
Confidence            59999975 79999999999999999998742100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC----CeEEEEE--cCC-c--EEEccEEEEecCCCh
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAAVLLL--AEG-K--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~----~gv~V~~--~~G-~--~i~ArlVIdADG~~S  261 (584)
                                 +| ..+.+.+.+.+++.|++++.+++++++...+    +.+.|++  .+| +  ++.++.||-|.|...
T Consensus       248 -----------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          248 -----------FD-QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             -----------CC-HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence                       00 1233455666778899999999888886543    3455543  344 2  578999999999865


Q ss_pred             H
Q 007945          262 P  262 (584)
Q Consensus       262 ~  262 (584)
                      .
T Consensus       316 ~  316 (519)
T 3qfa_A          316 C  316 (519)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.83  E-value=0.051  Score=54.64  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~------------------------------------------~-  193 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC------------------------------------------E-  193 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS------------------------------------------C-
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC------------------------------------------C-
Confidence            69999965 799999999999999999987641100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEccEEEEecCCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~---~G~--~i~ArlVIdADG~~  260 (584)
                                        ..+.+++.+.|++++.+++++++..+++.+ .|.+.   +|+  ++.++.||-|.|..
T Consensus       194 ------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (319)
T 3cty_A          194 ------------------NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI  251 (319)
T ss_dssp             ------------------HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred             ------------------HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence                              012233446789999999999997664422 34443   454  68999999888754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.78  E-value=0.049  Score=54.34  Aligned_cols=88  Identities=17%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+...      .                                      
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------~--------------------------------------  181 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK------A--------------------------------------  181 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC------S--------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC------c--------------------------------------
Confidence            69999965 79999999999999999999775210      0                                      


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEccEEEEecCCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv-~V~~~---~G~--~i~ArlVIdADG~~  260 (584)
                                  +     ..+.+++.+ .|++++.+++++++..+++.+ .|.+.   +|+  ++.++.||-|.|..
T Consensus       182 ------------~-----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  241 (310)
T 1fl2_A          182 ------------D-----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLL  241 (310)
T ss_dssp             ------------C-----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             ------------c-----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence                        0     012233444 588999999999997655543 34443   243  68899999887754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.75  E-value=0.0061  Score=67.28  Aligned_cols=36  Identities=39%  Similarity=0.498  Sum_probs=31.4

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~  144 (584)
                      .+||+|||||| .|+++|..|++. |++|+|||+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            36999999965 699999999998 9999999998643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.62  E-value=0.033  Score=55.90  Aligned_cols=89  Identities=17%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+|||+| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------~  192 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA------------------------------------------H  192 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS------------------------------------------C
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc------------------------------------------c
Confidence            369999964 799999999999999999987742100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-----CcEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-----GKILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-----G~~i~ArlVIdADG~~  260 (584)
                      .              .     ..+++.+.|++++.++++.++..+++...|.+.+     ++++.++.||-|.|..
T Consensus       193 ~--------------~-----~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  249 (332)
T 3lzw_A          193 E--------------H-----SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFV  249 (332)
T ss_dssp             H--------------H-----HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred             H--------------H-----HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccC
Confidence            0              0     0123456789999999999987665544455544     3579999999888754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.60  E-value=0.09  Score=52.91  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....      .                                     
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------~-------------------------------------  190 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA------N-------------------------------------  190 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS------C-------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc------c-------------------------------------
Confidence            69999965 799999999999999999998642100      0                                     


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEccEEEEecCCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~--~i~ArlVIdADG~~  260 (584)
                                        ..+.+++.+ .|++++.+++++++..++....|.+.   +|+  ++.++.||-|.|..
T Consensus       191 ------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  248 (325)
T 2q7v_A          191 ------------------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHV  248 (325)
T ss_dssp             ------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             ------------------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence                              011223333 48899999999998764332234443   554  78999999888754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.52  E-value=0.012  Score=68.45  Aligned_cols=40  Identities=10%  Similarity=0.046  Sum_probs=34.2

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcC------CcEEEccEEEEecC
Q 007945          219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG  258 (584)
Q Consensus       219 G~~i~~~t~v~~v~~~~~gv~V~~~~------G~~i~ArlVIdADG  258 (584)
                      +..|+.+++|++|..++++++|++.+      +++++||.||-|.-
T Consensus       581 ~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvP  626 (852)
T 2xag_A          581 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  626 (852)
T ss_dssp             TCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCC
T ss_pred             CCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCC
Confidence            45789999999999999999998765      56899999998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.48  E-value=0.076  Score=52.86  Aligned_cols=90  Identities=18%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+|+||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-------------------------------------------  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------------------------------------
Confidence            469999965 799999999999999999997742110                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEccEEEEecCCCh
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~--~i~ArlVIdADG~~S  261 (584)
                                   ++     .+.+++.+ .|++++.++++.++..++....|.+.+   |+  ++.++.||-|.|...
T Consensus       192 -------------~~-----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  251 (323)
T 3f8d_A          192 -------------QP-----IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDP  251 (323)
T ss_dssp             -------------CH-----HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEC
T ss_pred             -------------CH-----HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCC
Confidence                         00     11223333 488999999999997765444466654   65  799999999988754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.47  E-value=0.078  Score=53.43  Aligned_cols=89  Identities=20%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+...      .                                    .
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------~------------------------------------~  197 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------A------------------------------------S  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------S------------------------------------C
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC------c------------------------------------c
Confidence            379999975 79999999999999999999875210      0                                    0


Q ss_pred             CcccccccccceeCHHHHHHHHHHH-HHhCCCEEEeCceEEEEEEeCC--eE-EEEEc---CC--cEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AA-VLLLA---EG--KILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~-a~~~G~~i~~~t~v~~v~~~~~--gv-~V~~~---~G--~~i~ArlVIdADG~~  260 (584)
                                         +.+.++ +++.|++++.+++++++..+++  .+ .|.+.   +|  +++.++.||-|.|..
T Consensus       198 -------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  258 (333)
T 1vdc_A          198 -------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE  258 (333)
T ss_dssp             -------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             -------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence                               001112 2356889999999999876653  33 24443   34  579999999888865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.45  E-value=0.01  Score=70.47  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~  144 (584)
                      .+||+|||| ++|+++|..|+++|+ +|+|+|+.+..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            689999995 579999999999999 79999998644

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.44  E-value=0.041  Score=60.52  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=29.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -.|+||||| .|+-+|..|++.|.+|.+++|.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            369999976 699999999999999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.33  E-value=0.027  Score=55.53  Aligned_cols=83  Identities=13%  Similarity=0.078  Sum_probs=60.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+|+||| .|+-+|..|++.| +|.++++.+.       .++                                    
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-------~~~------------------------------------  177 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV-------EPD------------------------------------  177 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC-------CCC------------------------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC-------CCC------------------------------------
Confidence            469999965 7999999999999 9999986641       000                                    


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                                         +.+.+.+.+.|++++. +++.++..  ++ .|.+.+|+++.++.||-|.|..
T Consensus       178 -------------------~~~~~~l~~~gv~i~~-~~v~~i~~--~~-~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          178 -------------------ADQHALLAARGVRVET-TRIREIAG--HA-DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             -------------------HHHHHHHHHTTCEEEC-SCEEEEET--TE-EEEETTSCEEEESEEEECCEEE
T ss_pred             -------------------HHHHHHHHHCCcEEEc-ceeeeeec--CC-eEEeCCCCEEEEEEEEEccCcc
Confidence                               1123344567888885 88888743  33 6777889999999999988764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.30  E-value=0.0085  Score=63.02  Aligned_cols=84  Identities=21%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+..-..                                           
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~-------------------------------------------  184 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER-------------------------------------------  184 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-------------------------------------------
Confidence            69999975 7999999999999999999987532100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      .          ++ ..+.+.+.+.+++.|++++.++.+.++             |+++.+++||-|.|....
T Consensus       185 ~----------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~  232 (385)
T 3klj_A          185 Q----------LD-RDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPN  232 (385)
T ss_dssp             T----------SC-HHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEEC
T ss_pred             h----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccC
Confidence            0          00 122344556667778888888877665             567889999999998653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.06  E-value=0.016  Score=62.58  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~G--lrVlLIEr~~~~~  145 (584)
                      .+||+|||| ++|+.+|..|+++|  ++|+|||+.+.++
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            589999996 57999999999988  9999999987543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.01  E-value=0.11  Score=55.84  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             ccEEEEcch-HHHHHHHHHH--------------------hCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHH
Q 007945          111 FDVIVCGGT-LGIFIATALS--------------------FKGL-RVAIVERNTLKGREQEWNISRKELLELVE  162 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LA--------------------r~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~  162 (584)
                      -.|+||||| +|+=+|..|+                    +.|. +|.||+|......    ..+..|+..|..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~----~ft~~el~~l~~  215 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQV----AFTIKELREMIQ  215 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGC----CCCHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhh----ccCHHHHHHhhc
Confidence            479999975 7999999998                    6798 6999998864321    355666666543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.01  E-value=0.014  Score=62.98  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh-C------CCeEEEEcCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSF-K------GLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr-~------GlrVlLIEr~~~~  144 (584)
                      .+||+|||| ++|+.+|..|++ +      |++|+|||+.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            489999996 579999999999 7      9999999998654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.98  E-value=0.0094  Score=65.77  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .|+||||| .|+-+|..|++.|.+|.+++|.+.
T Consensus       187 rV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             eEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            69999965 699999999999999999999974

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=94.90  E-value=0.068  Score=58.21  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cCC----cEEEccEEEEecCCC
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG----KILSSHLIIDAMGNF  260 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~--~~G----~~i~ArlVIdADG~~  260 (584)
                      .+-+.+.+.+++.|++++.+++++++  +++++++..  .+|    ++|.|++||-|.|..
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v--~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKV--EEKQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEE--CSSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEE--eCCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            44566677788899999999999987  456665443  455    369999999999964

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.57  E-value=0.075  Score=57.09  Aligned_cols=46  Identities=28%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--------------------CC-eEEEEcCCCCCCCcccccCCHHHHHHH
Q 007945          111 FDVIVCGGT-LGIFIATALSFK--------------------GL-RVAIVERNTLKGREQEWNISRKELLEL  160 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~--------------------Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L  160 (584)
                      -.|+||||| +|+-+|..|++.                    |. +|.+|+|......    ..+..|+.+|
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~----~f~~~elrel  215 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA----AFTTLELREL  215 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC----CCCHHHHHHG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhh----ccChHHHHHh
Confidence            379999965 799999999874                    65 9999998863221    2444555544

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.36  E-value=0.13  Score=52.18  Aligned_cols=90  Identities=17%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~------------------------------------------~  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA------------------------------------------S  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS------------------------------------------C
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc------------------------------------------c
Confidence            479999965 799999999999999999997642100                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEE-cCC--cEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLL-AEG--KILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~--gv~V~~-~~G--~~i~ArlVIdADG~~  260 (584)
                      .               .+.+   +.+++.|++++.++++.++..+++  ++++.. .+|  +++.++.||-|.|..
T Consensus       194 ~---------------~~~~---~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (335)
T 2a87_A          194 K---------------IMLD---RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHE  251 (335)
T ss_dssp             T---------------THHH---HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEE
T ss_pred             H---------------HHHH---HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCc
Confidence            0               0000   112356889999999999865542  244432 134  478899888887754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=93.85  E-value=0.087  Score=58.03  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .|+||||| .|+-+|..|++.|.+|.+++|.+.
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            69999975 699999999999999999999974

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.78  E-value=0.23  Score=54.14  Aligned_cols=88  Identities=17%  Similarity=0.084  Sum_probs=61.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~-------------------------------------------  392 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------------------------------------  392 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc-------------------------------------------
Confidence            379999975 799999999999999999987642100                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEccEEEEecCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN  259 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv-~V~~~---~G~--~i~ArlVIdADG~  259 (584)
                                   +     ..+.+++.+ .|++++.++.++++..+++.+ .|.+.   +|+  ++.++.||-|.|.
T Consensus       393 -------------~-----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          393 -------------D-----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             -------------C-----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             -------------C-----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence                         0     112334444 478999999999987655544 34443   243  6888888887774

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=93.52  E-value=0.44  Score=53.58  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChH
Q 007945          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP  262 (584)
Q Consensus       209 ~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.+++.|++++.+++++++.  +++++++ .+|  +++.++.||-|.|..+.
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            445666778899999999999875  5676665 566  57999999999997753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=92.92  E-value=0.68  Score=52.65  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             cEEEEc--ch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG--GT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG--Gg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|||  || .|+-+|..|++.|.+|.++++.+
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            699997  55 79999999999999999999875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.85  E-value=0.35  Score=50.56  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                      +.+.+.+.+++.|++++.++++++++  +++  |.+++|+++.+|+||-|.|...
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~--~~~--v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIR--EHE--IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEC--SSE--EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEEC--CCe--EEECCCCEEeeeEEEECCCCCc
Confidence            34455666677899999999999874  344  5667899999999999988643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=92.73  E-value=0.043  Score=62.34  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC--------CeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG--------LRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G--------lrVlLIEr~~  142 (584)
                      ..+|+||||| +|+++|..|+++|        ++|+|+|++.
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            4799999976 6999999999998        9999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.62  E-value=0.13  Score=45.65  Aligned_cols=33  Identities=15%  Similarity=0.403  Sum_probs=29.3

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .-.|+|+| |..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            34799999 5689999999999999999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=92.44  E-value=0.64  Score=55.01  Aligned_cols=31  Identities=35%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .|+||||| .|+=+|..+++.|. +|.+++|.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999976 79999999999997 899999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.09  E-value=0.13  Score=46.25  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=28.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+|+| |..|..+|..|.+.|++|.++|+++
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4799999 4689999999999999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.75  E-value=0.18  Score=53.57  Aligned_cols=32  Identities=16%  Similarity=0.047  Sum_probs=28.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~  142 (584)
                      -.|+||||| .|+=+|..|++.|.+ |.+++|.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            369999975 799999999999999 99999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.44  E-value=0.15  Score=44.87  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+|+ ..|..+|..|+++|++|.++|+++
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            6999995 589999999999999999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.36  E-value=0.53  Score=55.38  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.|||+.+...        .                                   
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~--------~-----------------------------------  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS--------A-----------------------------------  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------H-----------------------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------h-----------------------------------
Confidence            369999965 79999999999999999999874210        0                                   


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE-EEEEcC-------C--cEEEccEEEEecC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAE-------G--KILSSHLIIDAMG  258 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv-~V~~~~-------G--~~i~ArlVIdADG  258 (584)
                                     .      .+++++.|++++.++.++++..+ ++.+ .|++.+       |  +++.++.||-|.|
T Consensus       322 ---------------~------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G  380 (965)
T 2gag_A          322 ---------------A------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGG  380 (965)
T ss_dssp             ---------------H------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECC
T ss_pred             ---------------h------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCC
Confidence                           0      13445678999999999998763 3432 344432       4  5799999999999


Q ss_pred             CCh--HHHhHhc
Q 007945          259 NFS--PVVKQIR  268 (584)
Q Consensus       259 ~~S--~v~rql~  268 (584)
                      ...  .+.++.+
T Consensus       381 ~~P~~~l~~~~~  392 (965)
T 2gag_A          381 FNPVVHLHSQRQ  392 (965)
T ss_dssp             EEECCHHHHHTT
T ss_pred             cCcChHHHHhCC
Confidence            754  3555543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=91.07  E-value=0.32  Score=52.62  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +...|||||||+| .|+++|+.|+++|++|+||||++..+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            3447999999976 59999999999999999999998654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.04  E-value=0.18  Score=43.73  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|+|+|+ ..|..+|..|++.|++|.++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            47999995 579999999999999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=90.94  E-value=1.2  Score=47.12  Aligned_cols=49  Identities=12%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cC-----CcEEEccEEEEecCC
Q 007945          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE-----GKILSSHLIIDAMGN  259 (584)
Q Consensus       209 ~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~--~~-----G~~i~ArlVIdADG~  259 (584)
                      +.+.+.+++.|++++.++++++++  +++++++.  .+     ++++.+++||-|.|.
T Consensus       212 ~~~~~~l~~~gI~~~~~~~v~~v~--~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEE--TTEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEE--CCeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            445566677899999999999874  56666553  22     457999999998874

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.05  E-value=0.3  Score=51.83  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=32.4

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+|||+||||| .|+++|+.|+++|++|+|+|++...+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            46999999975 69999999999999999999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.32  E-value=0.27  Score=41.21  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=28.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKG-LRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~G-lrVlLIEr~~  142 (584)
                      ..|+|+|+ +.|..+|..|.+.| ++|.+++|++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            46999994 68999999999999 9999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.29  E-value=0.35  Score=43.23  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=27.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+|+ ..|..+|..|.+.|++|+++|+.+
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            6999995 589999999999999999999873

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=88.92  E-value=0.62  Score=49.63  Aligned_cols=37  Identities=27%  Similarity=0.430  Sum_probs=33.0

Q ss_pred             CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+||||||||| .|+++|+.|+++|++|+|+|++..+|
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            46999999976 59999999999999999999998765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=88.88  E-value=0.43  Score=50.90  Aligned_cols=36  Identities=36%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~  145 (584)
                      .+||+||||| +|+++|..|+++|+ +|+|+|++..++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            5899999965 69999999999999 899999987543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.84  E-value=0.3  Score=48.04  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ..|+|+| ||+|..+|..|++.|+ ++.|+|+..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4799999 7899999999999998 899999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.83  E-value=0.33  Score=42.21  Aligned_cols=31  Identities=32%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+| |..|..+|..|.+.|++|.++|+.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            599999 5689999999999999999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.16  E-value=0.34  Score=48.72  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+||||| .|+-+|..|++.| +|.++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            479999965 7999999999999 799999874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.10  E-value=0.3  Score=45.06  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             cEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFK-GLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~-GlrVlLIEr~~  142 (584)
                      .|+|+| |..|..+|..|.+. |++|.++|+++
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            699999 56899999999999 99999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=87.50  E-value=0.77  Score=46.81  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=27.9

Q ss_pred             ccEEEEc-chHHHH-HHHHHHhCCCeEEEEcCCCC
Q 007945          111 FDVIVCG-GTLGIF-IATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~-~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      --|.|+| |+.|++ +|..|+++|++|.+.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3689999 789997 66688899999999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=87.49  E-value=0.4  Score=47.78  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            69999975 799999999999999999998763

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=86.53  E-value=0.52  Score=46.71  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -.|+||||| .|+-+|..|++.|.+|.+++|...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            369999975 799999999999999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=86.37  E-value=0.62  Score=47.24  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=28.2

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|+ ..|+++|..|++.|.+|.+++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            36899995 579999999999999999999864

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=86.20  E-value=0.63  Score=45.74  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|||-||  |+|.++|..|++.|.+|++++++.
T Consensus         4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~   36 (247)
T 3ged_A            4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE   36 (247)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3788895  799999999999999999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=85.81  E-value=0.57  Score=47.92  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|.|||+| .|...|+.+|.+|++|.|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999965 69999999999999999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=85.59  E-value=0.7  Score=46.33  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=28.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|||+ ..|..+|..|+++|++|.++|+.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5999995 479999999999999999999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.52  E-value=0.68  Score=45.07  Aligned_cols=31  Identities=32%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus         9 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            9 TVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.39  E-value=0.58  Score=44.46  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+|+| .|..+|..|.++|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999965 79999999999999999999875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=85.21  E-value=0.76  Score=44.22  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889994  799999999999999999999874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=85.21  E-value=0.74  Score=43.87  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=27.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   35 (230)
T 3guy_A            4 IVITGASSGLGAELAKLYDAEGKATYLTGRSE   35 (230)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            789994  799999999999999999999874

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=85.16  E-value=0.44  Score=48.61  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             cEEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVG-Gg~Gl~-----~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =+.|.| ||+|-+     +|++||+.|.||++||-.+.
T Consensus        50 VIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq   87 (314)
T 3fwy_A           50 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK   87 (314)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred             EEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            355668 887665     57889999999999998764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.08  E-value=1.8  Score=42.53  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|....
T Consensus        12 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~   46 (287)
T 3pxx_A           12 VVLVTGGARGQGRSHAVKLAEEGADIILFDICHDI   46 (287)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccc
Confidence            4899995  79999999999999999999987543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=84.99  E-value=1.8  Score=43.23  Aligned_cols=32  Identities=16%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|.+|+++++...
T Consensus        30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           30 VAFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            4889995  7999999999999999999998854

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.90  E-value=0.68  Score=46.08  Aligned_cols=31  Identities=39%  Similarity=0.503  Sum_probs=27.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|||+ ..|..+|..++++|++|.++|+++
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            5899995 579999999999999999999875

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=84.87  E-value=0.84  Score=44.74  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =+||-||  |+|.++|..|++.|.+|++.+|+..
T Consensus        13 ~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~   46 (242)
T 4b79_A           13 QVLVTGGSSGIGAAIAMQFAELGAEVVALGLDAD   46 (242)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3788895  7999999999999999999998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=84.67  E-value=0.71  Score=46.62  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=27.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|+| .|++.|..|+++|.+|.+++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            368999955 79999999999999999999863

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=84.60  E-value=1.9  Score=42.18  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        15 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   48 (278)
T 3sx2_A           15 VAFITGAARGQGRAHAVRLAADGADIIAVDLCDQ   48 (278)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCeEEEEecccc
Confidence            4889995  7999999999999999999998753

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=84.44  E-value=0.9  Score=44.14  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+..
T Consensus         9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A            9 VFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4889994  7999999999999999999998763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=84.18  E-value=0.89  Score=44.14  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A           14 IILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888994  799999999999999999999874

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=84.11  E-value=0.93  Score=44.56  Aligned_cols=31  Identities=32%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|.|+|+ ..|.++|..|+++|++|.+++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            3789995 479999999999999999999876

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=84.08  E-value=0.92  Score=44.00  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|....
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899994  68999999999999999999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=83.91  E-value=0.85  Score=44.79  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ..|+|+| ||+|..+|..|++.|+ ++.|+|...
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5899999 7899999999999998 788999775

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=83.87  E-value=0.91  Score=44.70  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        32 ~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           32 SAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3889995  799999999999999999999864

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.83  E-value=1.5  Score=43.22  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        29 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           29 VAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3899995  799999999999999999999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=83.69  E-value=1  Score=44.34  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (271)
T 3tzq_B           13 VAIITGACGGIGLETSRVLARAGARVVLADLPE   45 (271)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4889994  799999999999999999999875

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=83.42  E-value=0.87  Score=45.01  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=28.0

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =++|-||  |+|.++|..|+++|.+|++.+|...
T Consensus        13 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A           13 RALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             EEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            3678884  7999999999999999999998754

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=83.39  E-value=1  Score=43.35  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+..
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            9 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            4899994  7899999999999999999998864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=83.34  E-value=0.86  Score=44.85  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      --|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        15 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   49 (269)
T 3vtz_A           15 KVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK   49 (269)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC-
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            35889994  7999999999999999999998764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=83.27  E-value=1.1  Score=43.48  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus         8 ~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            8 TALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=83.25  E-value=1  Score=44.96  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|.++|..|++.|.+|++.+|+.
T Consensus        32 alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   63 (273)
T 4fgs_A           32 AVITGATSGIGLAAAKRFVAEGARVFITGRRK   63 (273)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778885  799999999999999999999874

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.24  E-value=1  Score=43.45  Aligned_cols=31  Identities=32%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A           11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4889994  789999999999999999999864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=83.20  E-value=1.1  Score=42.82  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         4 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (235)
T 3l77_A            4 VAVITGASRGIGEAIARALARDGYALALGARSV   36 (235)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3789994  799999999999999999999874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=83.13  E-value=1  Score=43.84  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   42 (255)
T 4eso_A           10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE   42 (255)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=83.12  E-value=1  Score=43.64  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A           11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4899995  789999999999999999999874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.10  E-value=1.1  Score=44.22  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+..
T Consensus         8 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            8 TLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            4889994  7999999999999999999999864

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=83.00  E-value=0.85  Score=44.32  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         9 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            9 LAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4888994  799999999999999999999874

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=82.98  E-value=0.87  Score=44.61  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        29 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           29 PILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4889994  799999999999999999999875

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=82.91  E-value=1  Score=44.24  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        18 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   50 (266)
T 3p19_A           18 LVVITGASSGIGEAIARRFSEEGHPLLLLARRV   50 (266)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4888894  799999999999999999999864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=82.90  E-value=0.91  Score=43.60  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A           16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            4889995  789999999999999999999874

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=82.86  E-value=1.1  Score=43.17  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=27.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |+|.||  |+|..+|..|+++|++|.+++|+..
T Consensus         4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   36 (257)
T 1fjh_A            4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            789994  7999999999999999999998763

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=82.75  E-value=0.89  Score=44.77  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus         6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            6 VILITGASGGIGEGIARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789994  799999999999999999999874

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.68  E-value=0.98  Score=43.21  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|++.
T Consensus         5 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            5 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            3889994  7899999999999999999998864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.65  E-value=1.1  Score=43.59  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A           10 SALITGSARGIGRAFAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=82.63  E-value=1.1  Score=44.30  Aligned_cols=32  Identities=22%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        13 ~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~   46 (286)
T 3uve_A           13 VAFVTGAARGQGRSHAVRLAQEGADIIAVDICKP   46 (286)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCeEEEEecccc
Confidence            4889995  7999999999999999999998753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=82.61  E-value=1.1  Score=44.41  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   66 (276)
T 3r1i_A           34 RALITGASTGIGKKVALAYAEAGAQVAVAARHS   66 (276)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=82.59  E-value=0.89  Score=44.93  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           35 TALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3888894  799999999999999999999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=82.53  E-value=1.1  Score=44.25  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   58 (279)
T 3sju_A           26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDA   58 (279)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889995  799999999999999999999864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=82.52  E-value=0.94  Score=44.19  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889994  789999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=82.50  E-value=0.99  Score=44.90  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=28.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|+ ..|..+|..|+++|++|.+++|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            36899995 479999999999999999999864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=82.47  E-value=2.1  Score=43.11  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|.+|+++++..
T Consensus        48 ~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~   80 (317)
T 3oec_A           48 VAFITGAARGQGRTHAVRLAQDGADIVAIDLCR   80 (317)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCeEEEEeccc
Confidence            3888894  799999999999999999999874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=82.46  E-value=1.1  Score=44.33  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        29 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           29 VCIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=82.46  E-value=1.1  Score=43.74  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        10 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   42 (265)
T 3lf2_A           10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDG   42 (265)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=82.43  E-value=0.96  Score=43.80  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=27.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      --|+||||| +|...|..|.+.|.+|+|+++.
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            479999975 7999999999999999999864

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=82.43  E-value=1.2  Score=42.74  Aligned_cols=31  Identities=48%  Similarity=0.701  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         4 ~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~   36 (239)
T 2ekp_A            4 KALVTGGSRGIGRAIAEALVARGYRVAIASRNP   36 (239)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3789994  789999999999999999999875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=82.41  E-value=1.1  Score=44.27  Aligned_cols=31  Identities=26%  Similarity=0.544  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus         7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   39 (281)
T 3zv4_A            7 VALITGGASGLGRALVDRFVAEGARVAVLDKSA   39 (281)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            4788894  799999999999999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=82.34  E-value=2.1  Score=45.74  Aligned_cols=50  Identities=24%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESG  164 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lG  164 (584)
                      -.|+||||| .|+=+|..+.+.|. +|.+++|.+...    |.-+..+++.+.+.|
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~----~p~~~~e~~~~~~~G  316 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKN----MPGSQREVAHAEEEG  316 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTT----CSSCHHHHHHHHHTT
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccC----CCCCHHHHHHHHHCC
Confidence            379999976 69999999999998 599999886432    233344555554444

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=82.33  E-value=1.1  Score=45.81  Aligned_cols=31  Identities=16%  Similarity=0.488  Sum_probs=27.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      ..|.|+|+ ..|+++|..|+++|++|.+++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            36999995 57999999999999999999974

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=82.32  E-value=2.5  Score=41.88  Aligned_cols=31  Identities=6%  Similarity=0.057  Sum_probs=21.7

Q ss_pred             cEEEEcc-hHH-HHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLG-IFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~G-l~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .++|||| +.+ .-+|..+++.|.+|+++++..
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             ceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            5777775 555 455556667799999987653

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=82.32  E-value=1.2  Score=43.07  Aligned_cols=31  Identities=26%  Similarity=0.450  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|++
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            9 LAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            3889994  789999999999999999999875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=82.23  E-value=0.95  Score=44.50  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=28.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        30 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           30 VALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4888894  7999999999999999999998754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=82.22  E-value=0.93  Score=44.13  Aligned_cols=31  Identities=39%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus         8 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4788894  799999999999999999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=82.21  E-value=0.95  Score=48.32  Aligned_cols=32  Identities=25%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|.|+| |+.|+++|..|+++|++|.+.|++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3699999 7889999889999999999999875

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=82.13  E-value=1.2  Score=42.43  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |+|.||  ++|..+|..|+++|++|.+++|.+.
T Consensus         4 vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            789994  6899999999999999999998753

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=82.12  E-value=1.2  Score=43.96  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        12 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~   45 (281)
T 3s55_A           12 TALITGGARGMGRSHAVALAEAGADIAICDRCEN   45 (281)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4889994  7999999999999999999999754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=82.10  E-value=0.96  Score=43.54  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        15 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A           15 KTSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35899995  689999999999999999999863

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=82.08  E-value=1  Score=48.55  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ...|.|||. -.|+.+|..||++|++|.++|+.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            468999995 479999999999999999999874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=82.08  E-value=1  Score=45.51  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=29.2

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      ..-|+||| ||+|+.+|..||+.|+ ++.|+|...
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            35899999 7899999999999997 789999775

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=82.07  E-value=1.3  Score=43.80  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =+||-||  |+|.++|..||+.|.+|++++|+..
T Consensus         9 valVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~   42 (258)
T 4gkb_A            9 VVIVTGGASGIGGAISMRLAEERAIPVVFARHAP   42 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc
Confidence            3788885  7999999999999999999998753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=82.07  E-value=1.2  Score=44.29  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           30 VALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3889994  799999999999999999999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=82.06  E-value=1.2  Score=43.90  Aligned_cols=31  Identities=32%  Similarity=0.325  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =++|-||  |+|.++|..||+.|.+|++.+|+.
T Consensus         9 valVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            9 VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3778885  799999999999999999999874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=82.02  E-value=0.99  Score=44.66  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        14 ~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~   46 (311)
T 3o26_A           14 CAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV   46 (311)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=81.99  E-value=1.2  Score=44.19  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        18 ~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~   50 (291)
T 3rd5_A           18 TVVITGANSGLGAVTARELARRGATVIMAVRDT   50 (291)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889994  799999999999999999999874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=81.98  E-value=1.2  Score=44.33  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        49 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           49 NVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899994  799999999999999999999875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.95  E-value=1.2  Score=43.57  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (264)
T 3ucx_A           13 VVVISGVGPALGTTLARRCAEQGADLVLAARTV   45 (264)
T ss_dssp             EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            4889995  799999999999999999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=81.93  E-value=1.4  Score=41.71  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|.| .|.++|..|++.|++|.+++|.+
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999955 79999999999999999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=81.86  E-value=0.78  Score=45.86  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|+||||| +|...|..|.+.|.+|+||++..
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            469999975 79999999999999999999754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=81.79  E-value=1.2  Score=43.85  Aligned_cols=31  Identities=39%  Similarity=0.525  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A           13 TYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=81.78  E-value=1.3  Score=43.90  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|+| ||+|.++|..|++.|.+|.+++|..
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            699999 6799999999999999999998774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=81.69  E-value=1.1  Score=43.75  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             cEEEEc--c--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG--G--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG--G--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||-|  |  |+|.++|..||++|.+|++.+|+.
T Consensus         8 ~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            8 TYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            378888  4  799999999999999999999874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=81.69  E-value=1  Score=43.55  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        11 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A           11 VALVTGASRGIGKAIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999864

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=81.67  E-value=1.2  Score=43.66  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|...
T Consensus        30 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           30 VVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3888894  7999999999999999999998764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=81.66  E-value=1.2  Score=43.84  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        13 ~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~   45 (277)
T 3tsc_A           13 VAFITGAARGQGRAHAVRMAAEGADIIAVDIAG   45 (277)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCEEEEEeccc
Confidence            3889995  799999999999999999999864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=81.62  E-value=1.3  Score=42.81  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -++|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (247)
T 2jah_A            9 VALITGASSGIGEATARALAAEGAAVAIAARRV   41 (247)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889994  799999999999999999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.61  E-value=1.3  Score=43.73  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        27 ~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~   59 (281)
T 3v2h_A           27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGA   59 (281)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4889994  799999999999999999999853

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=81.60  E-value=1.3  Score=43.99  Aligned_cols=32  Identities=28%  Similarity=0.562  Sum_probs=28.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        11 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A           11 TMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             EEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4889994  7999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=81.59  E-value=0.95  Score=48.13  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|+| |+.|+++|..|+++|++|.+.|.+..
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            589999 67899999899999999999998764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.57  E-value=1.3  Score=42.90  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        21 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           21 GVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4899994  789999999999999999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=81.56  E-value=1.3  Score=42.72  Aligned_cols=31  Identities=39%  Similarity=0.558  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  ++|..+|..|+++|++|.+++|..
T Consensus        15 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           15 VAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899994  689999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.51  E-value=0.56  Score=50.40  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      .-|||+|+| .|..+|..|...|++|++||+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            469999965 899999999999999999998863

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=81.44  E-value=0.95  Score=44.69  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|.++|..|+++|.+|++.+|+.
T Consensus        12 alVTGas~GIG~aia~~la~~Ga~Vvi~~~~~   43 (255)
T 4g81_D           12 ALVTGSARGLGFAYAEGLAAAGARVILNDIRA   43 (255)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            777784  799999999999999999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=81.44  E-value=0.81  Score=45.75  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=28.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|+| .|++.|..|+++|.+|.+++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            368999954 79999999999999999999884

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=81.43  E-value=1.3  Score=42.49  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  ++|..+|..|+++|++|.+++|+.
T Consensus        13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A           13 CAAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3889994  689999999999999999999864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=81.42  E-value=1.3  Score=43.65  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      -|+|.||  |+|..+|..|+++|.+|++++|.
T Consensus        33 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           33 TAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            4899995  79999999999999999999854

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=81.32  E-value=1.1  Score=42.56  Aligned_cols=32  Identities=34%  Similarity=0.511  Sum_probs=28.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  ++|..+|..|+++|++|.+++|...
T Consensus         4 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   37 (242)
T 1uay_A            4 SALVTGGASGLGRAAALALKARGYRVVVLDLRRE   37 (242)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc
Confidence            3889994  6899999999999999999998763

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=81.30  E-value=1.4  Score=43.22  Aligned_cols=32  Identities=28%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (264)
T 2dtx_A           10 VVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP   43 (264)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            4889994  7999999999999999999998764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=81.27  E-value=1  Score=45.15  Aligned_cols=31  Identities=39%  Similarity=0.564  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        43 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           43 SVLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4888894  799999999999999999999875

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.23  E-value=1.1  Score=43.90  Aligned_cols=31  Identities=42%  Similarity=0.584  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        12 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (262)
T 3pk0_A           12 SVVVTGGTKGIGRGIATVFARAGANVAVAGRST   44 (262)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=81.18  E-value=1.6  Score=47.39  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI  165 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl  165 (584)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-..-.-.++..-.+.+.+.|+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV  270 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGM  270 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCc
Confidence            479999975 7999999999999999999998743321111122223345556664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=81.11  E-value=1.4  Score=42.23  Aligned_cols=30  Identities=37%  Similarity=0.465  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  ++|..+|..|+++|++|.+++|+.
T Consensus         5 vlItGasggiG~~~a~~l~~~G~~V~~~~r~~   36 (250)
T 2cfc_A            5 AIVTGASSGNGLAIATRFLARGDRVAALDLSA   36 (250)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            789994  689999999999999999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.09  E-value=1.4  Score=45.43  Aligned_cols=34  Identities=32%  Similarity=0.641  Sum_probs=29.3

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~  143 (584)
                      ..-|+||| ||+|+.+|..|++.|+ ++.|+|....
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            35799999 7899999999999998 6788998763

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=81.07  E-value=1.4  Score=42.51  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=28.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+..
T Consensus         9 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            9 NVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            4889994  7899999999999999999998753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=81.06  E-value=1  Score=44.65  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        10 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   42 (280)
T 3tox_A           10 IAIVTGASSGIGRAAALLFAREGAKVVVTARNG   42 (280)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3888894  799999999999999999999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=80.96  E-value=1  Score=44.57  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        31 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           31 VAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             EEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3888894  799999999999999999999864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=80.96  E-value=1.3  Score=43.63  Aligned_cols=32  Identities=16%  Similarity=0.144  Sum_probs=28.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|...
T Consensus        17 ~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~   50 (280)
T 3pgx_A           17 VAFITGAARGQGRSHAVRLAAEGADIIACDICAP   50 (280)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecccc
Confidence            3889994  7999999999999999999998653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=80.96  E-value=1.1  Score=44.27  Aligned_cols=31  Identities=35%  Similarity=0.404  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (272)
T 4dyv_A           30 IAIVTGAGSGVGRAVAVALAGAGYGVALAGRRL   62 (272)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788884  799999999999999999999864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.95  E-value=1.4  Score=42.71  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus         8 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (256)
T 2d1y_A            8 GVLVTGGARGIGRAIAQAFAREGALVALCDLRP   40 (256)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4889994  789999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.92  E-value=1.5  Score=40.77  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  ++|..++..|+++|++|.++.|++
T Consensus         3 vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            899994  589999999999999999999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=80.92  E-value=1.1  Score=44.20  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           30 VAIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3788884  799999999999999999999864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=80.89  E-value=1.3  Score=44.19  Aligned_cols=31  Identities=26%  Similarity=0.553  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4999994  799999999999999999999874

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=80.84  E-value=1.4  Score=42.50  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  ++|..+|..|+++|++|++++|..
T Consensus        14 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A           14 VAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899994  689999999999999999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=80.83  E-value=1.4  Score=41.92  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=28.6

Q ss_pred             ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|+|.||  ++|..+|..|+++|++|.++.|++
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            35999995  589999999999999999999875

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.75  E-value=1.4  Score=43.17  Aligned_cols=31  Identities=39%  Similarity=0.518  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        23 ~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           23 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=80.73  E-value=1.1  Score=44.38  Aligned_cols=31  Identities=42%  Similarity=0.506  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4888894  799999999999999999999875

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=80.61  E-value=1.4  Score=42.91  Aligned_cols=31  Identities=29%  Similarity=0.532  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        15 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A           15 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999874

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=80.55  E-value=1.5  Score=41.80  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  ++|..+|..|+++|++|.+++|..
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            9 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899994  689999999999999999999864

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=80.51  E-value=1.1  Score=43.76  Aligned_cols=31  Identities=35%  Similarity=0.457  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        12 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (267)
T 3t4x_A           12 TALVTGSTAGIGKAIATSLVAEGANVLINGRRE   44 (267)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999874

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.50  E-value=1.5  Score=42.30  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =++|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         7 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   39 (245)
T 1uls_A            7 AVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (245)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3889994  789999999999999999998864

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=80.50  E-value=1.5  Score=42.69  Aligned_cols=31  Identities=42%  Similarity=0.572  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A           14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899994  689999999999999999999864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=80.48  E-value=1.5  Score=42.46  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  ++|..+|..|+++|++|.+++|..
T Consensus         9 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            9 LALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4899994  689999999999999999999864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=80.47  E-value=1.5  Score=42.65  Aligned_cols=31  Identities=32%  Similarity=0.447  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            9 LAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3889994  789999999999999999999864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=80.39  E-value=1.2  Score=43.69  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|+.
T Consensus        22 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   54 (266)
T 4egf_A           22 RALITGATKGIGADIARAFAAAGARLVLSGRDV   54 (266)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888994  799999999999999999999864

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=80.37  E-value=1.2  Score=43.18  Aligned_cols=31  Identities=32%  Similarity=0.328  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         7 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (260)
T 2qq5_A            7 VCVVTGASRGIGRGIALQLCKAGATVYITGRHL   39 (260)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3788884  799999999999999999998864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=80.35  E-value=1.2  Score=42.65  Aligned_cols=31  Identities=29%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus         7 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~   39 (247)
T 3lyl_A            7 VALVTGASRGIGFEVAHALASKGATVVGTATSQ   39 (247)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  789999999999999999999864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=80.34  E-value=1.5  Score=42.61  Aligned_cols=31  Identities=23%  Similarity=0.509  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            9 VAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3889994  799999999999999999999864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.32  E-value=1.2  Score=43.70  Aligned_cols=30  Identities=33%  Similarity=0.461  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|.++|..||+.|.+|++.+|+.
T Consensus        12 alVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A           12 ALVTGANTGLGQAIAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            677784  799999999999999999999864

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=80.25  E-value=1  Score=43.77  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (256)
T 3gaf_A           14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS   46 (256)
T ss_dssp             EEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=80.18  E-value=3.5  Score=46.18  Aligned_cols=38  Identities=39%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+|||+|||.| .|+.+|+.|++.|.+|++|||++..|
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            347999999966 59999999999999999999999865

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=80.12  E-value=1.2  Score=43.55  Aligned_cols=31  Identities=35%  Similarity=0.517  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (271)
T 4iin_A           31 NVLITGASKGIGAEIAKTLASMGLKVWINYRSN   63 (271)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4889994  799999999999999999999864

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=80.09  E-value=1.5  Score=42.43  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus         7 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (254)
T 1hdc_A            7 TVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=80.09  E-value=1.6  Score=42.49  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        11 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   43 (260)
T 2ae2_A           11 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   43 (260)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=80.07  E-value=1.5  Score=42.95  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus        23 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (273)
T 1ae1_A           23 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   55 (273)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899994  799999999999999999999874

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=80.07  E-value=1.5  Score=42.61  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (262)
T 1zem_A            9 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   41 (262)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4889994  799999999999999999999864

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=80.05  E-value=1.6  Score=42.49  Aligned_cols=32  Identities=41%  Similarity=0.548  Sum_probs=28.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+..
T Consensus        23 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           23 SVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4899994  7899999999999999999998753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=80.05  E-value=0.72  Score=40.75  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=28.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+|+| |+.|..+|..|++.|++|.+++|.+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3699999 6789999999999999999999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=80.04  E-value=1.3  Score=43.04  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|+.
T Consensus         6 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4788894  799999999999999999999874

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=80.04  E-value=1.5  Score=44.04  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=28.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCC--eEEEEcCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGL--RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~Gl--rVlLIEr~~  142 (584)
                      .-|.|+|+ ..|.++|..|++.|+  +|.++|+..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            47999995 579999999999999  999999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=80.04  E-value=1.3  Score=42.99  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        16 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (260)
T 2zat_A           16 VALVTASTDGIGLAIARRLAQDGAHVVVSSRKQ   48 (260)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4888894  799999999999999999999864

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=80.02  E-value=1.3  Score=41.99  Aligned_cols=31  Identities=32%  Similarity=0.543  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|.||  ++|..+|..|+++|++|.+++|++
T Consensus         7 ~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   39 (234)
T 2ehd_A            7 AVLITGASRGIGEATARLLHAKGYRVGLMARDE   39 (234)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3889994  689999999999999999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=80.01  E-value=1.3  Score=47.85  Aligned_cols=31  Identities=35%  Similarity=0.465  Sum_probs=28.1

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|+| |++|..+|..|+..|.+|++.|+.+
T Consensus       267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            589999 6799999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	584
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	6e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	9e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.001
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.003
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.003
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.003
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.003
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.004

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL----ELVE 162
           V ++D +V G G+ G+  A   +  G R A+VE + L G         K+++       E
Sbjct: 1   VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSE 60

Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
                 D    +   KFN      +    +   + +         IEI++  
Sbjct: 61  FMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH 112

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDD 170
            +V G   G+  A  L   G+ V + ER+   L G      +  + +  L+E G+ ++  
Sbjct: 8   AVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI 67

Query: 171 IDEATATKFNPNRCGFE---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
              +++ ++     G        +       ++     +L    +               
Sbjct: 68  SVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHT---------SKC 118

Query: 228 VSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260
           +  +        +  ++G    ++ +I A G  
Sbjct: 119 LVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 100 QSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           Q+ L+     T DV+V G G  G   A + +  G +V ++E+  + G
Sbjct: 6   QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 23/181 (12%), Positives = 45/181 (24%), Gaps = 9/181 (4%)

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNTL-----KGREQEWNISRKELLELVESGILV 167
            I+  G  G+ +   L   G+   I+ER T      + R         +LL        +
Sbjct: 6   AIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRM 65

Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGY 226
             D       +            +              ++   + +   + G   +++  
Sbjct: 66  ARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAA 125

Query: 227 SVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSC 283
            V           +          L    I    G      + I + R   G   + G  
Sbjct: 126 EVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRLFLAGDA 185

Query: 284 A 284
           A
Sbjct: 186 A 186

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG--------REQEWNISRKELLEL 160
           T DV++ G    G+  A +    G +V ++E+  + G                 +  L +
Sbjct: 23  TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82

Query: 161 VESGILVEDDIDEATATKFNPNRCGF 186
            +   ++ DD  +      +P     
Sbjct: 83  EDKKQIMIDDTMKGGRNINDPELVKV 108

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 13/165 (7%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN---------TLKGREQEWNISRKELLE 159
             + I+ G G  G+F A  L+  G  V + +           +  G     N+       
Sbjct: 4   YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHY 63

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           L ++   V+  +   T   F                  L       +++E++K      G
Sbjct: 64  LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYG 123

Query: 220 GVIFEGYSVSSICTYENAAVL---LLAEGKILSSHLIIDAMGNFS 261
             I     VS +   +N   +   L           +I A G  S
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           +DVIV G G     ++  LS  G +V  +++    G
Sbjct: 6   YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN------TLKGREQEWNISRKELLELVES 163
           +DVIV G G  G+  A   + +G  V ++++                N++ +  L+ +  
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62

Query: 164 GILVEDDIDEATATKFNPN--RCGFEGKGEIWVED----ILNLGVSPAKLIEIVKKRFIS 217
            I        +  + FN       FE  G    E+    +  +      +++ +  R   
Sbjct: 63  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122

Query: 218 LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS 261
           LG  I     V +I         ++L  G++L ++ ++ A+G  S
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           T  V+V G G+ G   + A    G  V +V++    G
Sbjct: 19  TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVE 162
           +D+IV G G+ G+  A   +    +VA+VE++ L G       + +K +     
Sbjct: 2   YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAAS 55

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
            +DVIV G G     ++  +S  G +V  ++RN   G
Sbjct: 6   EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	584
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.77
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.76
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.7
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.48
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.48
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.44
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.23
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.2
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.02
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.99
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.93
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.92
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.79
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.71
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.7
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.7
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.62
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.56
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.53
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.52
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.52
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.52
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.5
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.45
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.41
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.36
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.35
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.3
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.29
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.25
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.22
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.17
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.17
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.15
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.1
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.09
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.08
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.06
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.05
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.03
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.03
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.03
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.02
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.02
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.01
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.98
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.98
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.97
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.93
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.89
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.88
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.86
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.84
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.81
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.67
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.66
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.62
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.59
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.55
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.53
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.5
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.46
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.45
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.43
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.39
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.3
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.23
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.22
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.22
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.21
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.1
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.09
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.03
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.97
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.94
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.5
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.29
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.97
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.68
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.99
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.85
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.67
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.18
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.14
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.68
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.02
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.51
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.69
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.6
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.35
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.53
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	90.48
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.02
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.97
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.05
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.03
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.88
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.3
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.24
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.15
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.97
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.93
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	86.87
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.82
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.68
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.6
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.57
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.51
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.44
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.42
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.33
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.3
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.2
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.19
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.09
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.0
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	86.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.0
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.95
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	85.9
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.84
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.81
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.77
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	85.69
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.64
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.6
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.46
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.38
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.2
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.18
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	85.16
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.03
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	85.03
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.99
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.9
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	84.85
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.76
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.76
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.72
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	84.66
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.54
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	84.46
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.42
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.32
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	84.31
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	84.27
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.21
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.2
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.17
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	84.02
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.86
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	83.69
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	83.52
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	83.41
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.34
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	83.28
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.95
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.82
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	82.2
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.12
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.59
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.48
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.76
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.58
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	80.5
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.23
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.01

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.77  E-value=3.1e-18  Score=179.70  Aligned_cols=271  Identities=18%  Similarity=0.217  Sum_probs=155.2

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHh------CCCeEEEEcCCCCCCCcccc-c-CCHHHHHHHHHcCCCcccccchhhhc-
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSF------KGLRVAIVERNTLKGREQEW-N-ISRKELLELVESGILVEDDIDEATAT-  177 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr------~GlrVlLIEr~~~~~~~r~w-~-Is~~~l~~L~~lGl~~~~ele~~i~~-  177 (584)
                      +++|||||||| |+|+++|..|||      +|++|+||||+.+++.+..- + +++..++.|................. 
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~  109 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTED  109 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecc
Confidence            44699999995 679999999998      89999999999999876432 2 55556655522100000000000000 


Q ss_pred             --cc--CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945          178 --KF--NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (584)
Q Consensus       178 --~~--~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlV  253 (584)
                        .+  ......+............++.+....++.++.+++.+.|+++..++.+.++..+++++......+     ...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~-----~~~  184 (380)
T d2gmha1         110 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATN-----DVG  184 (380)
T ss_dssp             EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEEC-----CEE
T ss_pred             eEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccc-----ccc
Confidence              00  000000000011111122345688899999999999999999999999999877666543322111     000


Q ss_pred             EEecCCChHHHhHhcCCCCCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEc
Q 007945          254 IDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (584)
Q Consensus       254 IdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~  333 (584)
                      ++.+                                ....+.+...  ...     ....| .|..+.            
T Consensus       185 ~~~~--------------------------------~~~~~~~~~~--~~~-----~~~~~-v~~~G~------------  212 (380)
T d2gmha1         185 IQKD--------------------------------GAPKTTFERG--LEL-----HAKVT-IFAEGC------------  212 (380)
T ss_dssp             ECTT--------------------------------SCEEEEEECC--CEE-----ECSEE-EECCCT------------
T ss_pred             cccc--------------------------------cccccccccc--ccc-----cccEE-EEeeeC------------
Confidence            0000                                0011111110  110     11122 233321            


Q ss_pred             cCCCCCCccH-HHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945          334 IDPQAGSPKL-EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (584)
Q Consensus       334 ~~~~~~~~~l-~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~l  412 (584)
                            +..+ +++++.+...    ...    .    +..| ++    ...+...+++++|||||+++||+++.|+..++
T Consensus       213 ------~G~l~k~li~~~~l~----~~~----~----~~~G-~~----sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am  269 (380)
T d2gmha1         213 ------HGHLAKQLYKKFDLR----ANC----E----PQGG-FQ----SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAM  269 (380)
T ss_dssp             ------TCHHHHHHHHHTTTT----TTS----C----CCCG-GG----GCCCCEETTEEECTTTTCCCBTTTTBCHHHHH
T ss_pred             ------CCcchHHHHhhhhhc----ccc----c----cccc-cc----cccccccCCeeEEeccccccchhhcCCeeeee
Confidence                  1122 2333322100    010    0    0111 11    11245689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhhHh-hhchhhhhhHHHHHHHHhhc
Q 007945          413 RHLGRLSTGVYEAVRGDFVDSYSLSL-LNPYMPNLSASWLFQRAMSA  458 (584)
Q Consensus       413 r~~~~La~~i~~AL~~~~ls~~~l~~-L~~Ye~~~~~~~~l~k~m~~  458 (584)
                      ..+..+|+.|.+|++.++.+...+.. +..|+..+..+|.++.+-..
T Consensus       270 ~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~  316 (380)
T d2gmha1         270 KSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSV  316 (380)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHcCCcccchhhhhhhhHHHHHHhhHHHHHHHHh
Confidence            99988899999999999888776533 46788888888866555444

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.76  E-value=7.1e-19  Score=179.65  Aligned_cols=144  Identities=13%  Similarity=0.081  Sum_probs=87.1

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHH-----hCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh----
Q 007945          108 VGTFDVIVCGG-TLGIFIATALS-----FKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA----  176 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LA-----r~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~----  176 (584)
                      +..|||+|||| ++|+++|..||     ++|++|+||||++.+.. .+...|++..++.|..+|++++..-.....    
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~   84 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIA   84 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeE
Confidence            33699999996 57999999997     57999999999987653 355679999999999999875421100000    


Q ss_pred             --cccCCceeeecCCCc--cc-ccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEc
Q 007945          177 --TKFNPNRCGFEGKGE--IW-VEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSS  250 (584)
Q Consensus       177 --~~~~~~~v~f~~~~~--l~-~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~A  250 (584)
                        ...............  .. ........+.+..+...+.+.+.+.+ ......+.+               .+..+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~  149 (360)
T d1pn0a1          85 LYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL---------------IPEKMEI  149 (360)
T ss_dssp             EEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE---------------EEEEEEE
T ss_pred             EEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec---------------ccceEEe
Confidence              000001111000000  00 00111234677888888887776542 211111111               1335788


Q ss_pred             cEEEEecCCChHHHhH
Q 007945          251 HLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       251 rlVIdADG~~S~v~rq  266 (584)
                      +++|+|||.+|+++..
T Consensus       150 d~~~~~dg~~s~v~~~  165 (360)
T d1pn0a1         150 DSSKAEDPEAYPVTMT  165 (360)
T ss_dssp             CGGGTTCTTCCCEEEE
T ss_pred             eEEEEeecCCcceEEE
Confidence            8999999999988754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=2.3e-16  Score=155.18  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=101.7

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhh---hccc--CCc
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEAT---ATKF--NPN  182 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i---~~~~--~~~  182 (584)
                      +||+|||| ++|+++|..|+++|+ +|+|+||++.++.. +...+++..++.|..+|++....-....   ...+  +..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            69999996 579999999999997 99999999876532 3345889999999999976432100000   0000  111


Q ss_pred             eee-ecCCCcccccccccceeCHHHHHHHHHHHHH--hCCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEccEEEE
Q 007945          183 RCG-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFI--SLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIID  255 (584)
Q Consensus       183 ~v~-f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~--~~G~~i~~~t~v~~v~~~~~gv~V~~~~G----~~i~ArlVId  255 (584)
                      .+. +.. .....................+...+.  ..+..+..+++++.+...+++++|.+.++    ++++|++||+
T Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~  160 (288)
T d3c96a1          82 TVWSEPR-GVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG  160 (288)
T ss_dssp             EEEEEEC-GGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEE
T ss_pred             EEEeccc-cccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeec
Confidence            111 110 000000011112333333444444333  24779999999999999999999988764    4799999999


Q ss_pred             ecCCChHHHhHh
Q 007945          256 AMGNFSPVVKQI  267 (584)
Q Consensus       256 ADG~~S~v~rql  267 (584)
                      |||.+|.+++..
T Consensus       161 ADG~~S~vr~~~  172 (288)
T d3c96a1         161 ADGIHSAVRAHL  172 (288)
T ss_dssp             CCCTTCHHHHHH
T ss_pred             cCCccceeeeee
Confidence            999999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=2.2e-16  Score=157.59  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=105.6

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~  185 (584)
                      .+||+|||| ++|+++|..|+++|++|+||||++.+   +..+...++...++.|.++|+++...  .. ........+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~--~~-~~~~~~~~~~   78 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMA--RD-GLVHEGVEIA   78 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHH--HH-CEEESCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHH--hh-cccccceEEE
Confidence            579999995 57999999999999999999998753   22344568899999999999985421  11 1111111111


Q ss_pred             ecCC-----CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEE-EEeCCeEEEEEc-CCc--EEEccEEEEe
Q 007945          186 FEGK-----GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSI-CTYENAAVLLLA-EGK--ILSSHLIIDA  256 (584)
Q Consensus       186 f~~~-----~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v-~~~~~gv~V~~~-~G~--~i~ArlVIdA  256 (584)
                      ....     ..........+.+.+..+.+.|.+.+.+.++.+......... ..+++++.|++. +|+  +++||+||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgA  158 (292)
T d1k0ia1          79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (292)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEEC
Confidence            1000     000011122346788999999999999998877777665554 445566777664 443  5899999999


Q ss_pred             cCCChHHHhH
Q 007945          257 MGNFSPVVKQ  266 (584)
Q Consensus       257 DG~~S~v~rq  266 (584)
                      ||.+|.++++
T Consensus       159 DG~~S~vR~~  168 (292)
T d1k0ia1         159 DGFHGISRQS  168 (292)
T ss_dssp             CCTTCSTGGG
T ss_pred             CCCCCcccce
Confidence            9999988864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.48  E-value=4.5e-13  Score=130.57  Aligned_cols=151  Identities=14%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCcccccchhhhcccCCce-eee
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGF  186 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r--~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~-v~f  186 (584)
                      -.|+|||| ++|+++|..|+++|++|+|+||++.+....  ...+++.....|..+|+..+..     ........ ..+
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~~~   79 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI-----SVPSSSMEYVDA   79 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGT-----CBCCCEEEEEET
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhh-----ccCCCcceeEec
Confidence            47999995 579999999999999999999987654332  3357888999999999864321     11111100 111


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq  266 (584)
                      ..+..+..............+...+..  ...+..+..+++++++..++++++|+++||.+++++++|+|||.+|.++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~  157 (265)
T d2voua1          80 LTGERVGSVPADWRFTSYDSIYGGLYE--LFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKR  157 (265)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHH--HHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHHH
T ss_pred             cCCceecccccccccchhHHHHHHHHH--hcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccccccc
Confidence            111111100000111222223222222  234678999999999999999999999999999999999999999999987


Q ss_pred             hc
Q 007945          267 IR  268 (584)
Q Consensus       267 l~  268 (584)
                      +.
T Consensus       158 ~~  159 (265)
T d2voua1         158 LL  159 (265)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.48  E-value=5.7e-14  Score=136.67  Aligned_cols=152  Identities=22%  Similarity=0.281  Sum_probs=91.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCC-HHHHHHHHHcCCCcccccchhhhcccCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNIS-RKELLELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r------~w~Is-~~~l~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      +|||||||| ++|+++|..|+++|++|+||||++.++...      ..++. ......+............... ..+..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAF-SIFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHH-HHSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhh-hhhhh
Confidence            799999995 579999999999999999999998654210      00000 0011111111000000000000 00000


Q ss_pred             c----eeeecCCCccccc---ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEE
Q 007945          182 N----RCGFEGKGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLI  253 (584)
Q Consensus       182 ~----~v~f~~~~~l~~~---~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlV  253 (584)
                      .    ++...+ ......   ...........+.+.|.+++++.|++++.+++|+++..+++.+. |.+++|++++||.|
T Consensus        81 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v  159 (251)
T d2i0za1          81 EDIITFFENLG-VKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV  159 (251)
T ss_dssp             HHHHHHHHHTT-CCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred             HHHHHHHHhcC-CccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence            0    000000 000000   00011234566888999999999999999999999999888765 77888999999999


Q ss_pred             EEecCCChHH
Q 007945          254 IDAMGNFSPV  263 (584)
Q Consensus       254 IdADG~~S~v  263 (584)
                      |.|+|..|..
T Consensus       160 I~AtGg~S~p  169 (251)
T d2i0za1         160 VIAVGGKSVP  169 (251)
T ss_dssp             EECCCCSSSG
T ss_pred             EEccCCcccc
Confidence            9999999843

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.44  E-value=3.6e-13  Score=133.27  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhc
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIR  268 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~  268 (584)
                      .+++..+...|.+.+++.|++++.+++|+++..+++++.|++.+| +|+|+.||.|.|.+|. +.+.++
T Consensus       146 ~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg  213 (281)
T d2gf3a1         146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (281)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             cccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcC
Confidence            478999999999999999999999999999999999999998666 6999999999999987 444554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.40  E-value=5.7e-13  Score=131.14  Aligned_cols=69  Identities=23%  Similarity=0.198  Sum_probs=61.1

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      .+++..+.+.|.+.+.+.|++++.+++|+++..+++.+.|++.+| +|.|+.||.|+|.+|+ +.++++..
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~  216 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLN  216 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCC
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCC
Confidence            479999999999999999999999999999998888888988666 7999999999999997 77777643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=9e-12  Score=121.86  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCCHHHHHHHHHcCCCcccccchhhhcccCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNISRKELLELVESGILVEDDIDEATATKFNP  181 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r------~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~  181 (584)
                      ..|||||||| ++|+++|..|+++|++|+||||.+.++.+-      ..+++............ .+..+...+......
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~-~~~~~~~~l~~~~~~   81 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSALARYTNW   81 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHHHHSCHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhcc-ChHHHHHHhhhhccc
Confidence            4699999995 579999999999999999999998765210      00110000000000000 000000000000000


Q ss_pred             ceeeecC--CCccccccccc--ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEccEEE
Q 007945          182 NRCGFEG--KGEIWVEDILN--LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLII  254 (584)
Q Consensus       182 ~~v~f~~--~~~l~~~~~l~--~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~---V~~~~G~~i~ArlVI  254 (584)
                      ..+.+..  +..+..+....  ..-....+.+.|.+.+++.|++++.+++|+++...+++..   +...++++++|+.||
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VI  161 (253)
T d2gqfa1          82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI  161 (253)
T ss_dssp             HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred             chhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEE
Confidence            0000000  00000000000  0112456788899999999999999999999988766421   233477899999999


Q ss_pred             EecCCCh
Q 007945          255 DAMGNFS  261 (584)
Q Consensus       255 dADG~~S  261 (584)
                      .|+|..|
T Consensus       162 iAtGG~S  168 (253)
T d2gqfa1         162 VATGGLS  168 (253)
T ss_dssp             ECCCCSS
T ss_pred             EcCCccc
Confidence            9999887

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.20  E-value=1e-10  Score=116.53  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhHhcCC
Q 007945          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (584)
Q Consensus       201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rql~~~  270 (584)
                      .+++..+...|.+.+.+.|++++.+++|+++..+++.++ |.+.+| +|+|+.||.|.|.+|+ +++.++..
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~  214 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMA  214 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCC
T ss_pred             ccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCc
Confidence            489999999999999999999999999999999999876 776545 7999999999999998 55655543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=1.2e-09  Score=108.95  Aligned_cols=62  Identities=10%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EEE--cCC--cEEEccEEEEecCCChHHHh
Q 007945          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLL--AEG--KILSSHLIIDAMGNFSPVVK  265 (584)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~~--~~G--~~i~ArlVIdADG~~S~v~r  265 (584)
                      ...+.+.+.+++.+.|++++.+++++++..++++ ++ |.+  .++  .+|+||.||-|+|..+...+
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~  211 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNE  211 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccHH
Confidence            4567888899999999999999999999887763 32 333  233  26999999999998876443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.02  E-value=2.2e-09  Score=108.07  Aligned_cols=157  Identities=14%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc------c-C-----------CHHHH-HHHHHc--CC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW------N-I-----------SRKEL-LELVES--GI  165 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w------~-I-----------s~~~l-~~L~~l--Gl  165 (584)
                      ++++||||||| ++|+++|+.||++|++|+||||.+..+..-.+      . .           +.+.. +.....  ++
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~  100 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  100 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccc
Confidence            34689999996 57999999999999999999999875421110      0 0           11110 111111  11


Q ss_pred             Ccccccchh-----------hhcccCCceeeecCCCccccc-ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE
Q 007945          166 LVEDDIDEA-----------TATKFNPNRCGFEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT  233 (584)
Q Consensus       166 ~~~~ele~~-----------i~~~~~~~~v~f~~~~~l~~~-~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~  233 (584)
                      .++..+...           .....+.......+....... ...........+.+.|.+++.+.|++++.+++++++..
T Consensus       101 ~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~  180 (322)
T d1d4ca2         101 NDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE  180 (322)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEEC
T ss_pred             cCHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccc
Confidence            111000000           000000000000000000000 00111233456788899999999999999999999987


Q ss_pred             eCCe----EEEEEcCCc--EEEccEEEEecCCChHHH
Q 007945          234 YENA----AVLLLAEGK--ILSSHLIIDAMGNFSPVV  264 (584)
Q Consensus       234 ~~~g----v~V~~~~G~--~i~ArlVIdADG~~S~v~  264 (584)
                      ++++    +++.-.++.  .|+||.||.|+|..+...
T Consensus       181 d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~  217 (322)
T d1d4ca2         181 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNN  217 (322)
T ss_dssp             CSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             cccccccceEEEeecccEEEEeCCeEEEcCCCcccCH
Confidence            6553    444433333  599999999999887544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.93  E-value=1.8e-09  Score=108.31  Aligned_cols=133  Identities=20%  Similarity=0.246  Sum_probs=86.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++||||||| ++|+++|..|.++|++|+|+||++.+|-.  |...+       .-|+...  ..   ...+.   ..+. 
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGt--W~~n~-------ypg~~~d--~~---~~~~~---~s~~-   68 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV--WYWNR-------YPGARCD--IE---SIEYC---YSFS-   68 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH--HHHCC-------CTTCBCS--SC---TTTSS---CCSC-
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccc--cccCC-------CCCceec--cc---ccccc---cccc-
Confidence            799999996 57999999999999999999999876521  21000       0011000  00   00000   0000 


Q ss_pred             CCccccc-ccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCcEEEccEEEEecCCCh
Q 007945          189 KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       189 ~~~l~~~-~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~--~gv~V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       .....+ +-...-.....+.+.|.+.+.+.+.  .|..+|+|+++..++  +.+.|++.++++++||+||-|+|..|
T Consensus        69 -~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          69 -EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             -HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             -ccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence             000000 0000112456778888888888887  699999999998654  46899999999999999999999865

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.92  E-value=8.7e-09  Score=103.56  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe----EEEEEcCCc--EEEccEEEEecCCChH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g----v~V~~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      ..+.+.|.+++++.|++++.+++++++..++++    +++...+++  .|.||-||-|+|..+.
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccccc
Confidence            457788999999999999999999999887663    333333443  5899999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.79  E-value=5.2e-08  Score=97.80  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEccEEEEecCCCh
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFS  261 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~---~~G~--~i~ArlVIdADG~~S  261 (584)
                      ..+...|.+++.+.|++++..+.++++..+++.++ +.+   .+|+  +|+|+-||-|+|..+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            45778888999999999999999999999888654 222   3454  599999999999876

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=6.7e-08  Score=92.76  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC-CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|||||||| ++|+.+|.++||.|+||+||+++... +..-+ +-+         .|..    ....+..+...      
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~c-np~---------~gg~----~kg~l~reid~------   61 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL-PPK---------PPFP----PGSLLERAYDP------   61 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS-CCC---------SCCC----TTCHHHHHCCT------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccccc-CCc---------cccC----CCcceeeeeec------
Confidence            599999995 68999999999999999999976421 11000 000         0000    00001111100      


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCCh
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS  261 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S  261 (584)
                       +.+    .+       ..+...+.+.+.+. +.+++ ..+|+++..+++.+. |.+.+|.++.|+-||-|+|...
T Consensus        62 -kG~----av-------~a~raQ~k~~l~~~~nL~i~-q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          62 -KDE----RV-------WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             -TCC----CH-------HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             -cch----hh-------hhHHHHHHHHHhhhcCHHHH-hccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence             000    00       11222234444444 44555 456889988888775 8888999999999999999884

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.70  E-value=1.8e-08  Score=99.21  Aligned_cols=134  Identities=15%  Similarity=0.266  Sum_probs=79.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchh---hhcccCCcee
Q 007945          110 TFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA---TATKFNPNRC  184 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~---i~~~~~~~~v  184 (584)
                      ++||+|||| ++|+++|+.||+ .|++|+||||++.++.. .|.-.          ..++...+...   +..++.   +
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~-~~~~g----------~~~~~~~~~~~~~~~~~~~g---~   98 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGG----------QLFSAMIVRKPAHLFLDEIG---V   98 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCS----------TTCCCEEEETTTHHHHHHHT---C
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCc-eeecC----------EEcCHHHHhhhHHHHHHHcC---C
Confidence            699999995 579999999997 59999999999866521 11100          00000000000   000000   1


Q ss_pred             eecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EE--Ec------------CCcEEE
Q 007945          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL--LA------------EGKILS  249 (584)
Q Consensus       185 ~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~--~~------------~G~~i~  249 (584)
                      .|....     ...........+...+.+.+...+..++.++.+..+..+++.+. +.  ..            ++.+++
T Consensus        99 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~  173 (278)
T d1rp0a1          99 AYDEQD-----TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVME  173 (278)
T ss_dssp             CCEECS-----SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEE
T ss_pred             ceecCC-----ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeec
Confidence            111000     00111123456677777777777889999999999988877553 21  10            135799


Q ss_pred             ccEEEEecCCChH
Q 007945          250 SHLIIDAMGNFSP  262 (584)
Q Consensus       250 ArlVIdADG~~S~  262 (584)
                      |++||+|+|....
T Consensus       174 a~~vv~a~G~~~~  186 (278)
T d1rp0a1         174 AKIVVSSCGHDGP  186 (278)
T ss_dssp             EEEEEECCCSSST
T ss_pred             cceEEECcCCCcc
Confidence            9999999997654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.70  E-value=6.7e-08  Score=97.51  Aligned_cols=60  Identities=12%  Similarity=-0.057  Sum_probs=50.5

Q ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---c---EEEccEEEEecCCCh
Q 007945          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---K---ILSSHLIIDAMGNFS  261 (584)
Q Consensus       202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~---~i~ArlVIdADG~~S  261 (584)
                      ..+..+.+.|...+...+..|..+|+|++++.+++.+.|++.++   .   +..+|.||.|+|+.|
T Consensus       110 ~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         110 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             CchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            45677888888888777889999999999999999988887642   1   467999999999997

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.3e-08  Score=95.30  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=34.6

Q ss_pred             CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ++.+||||||||| .|+++|+.||++|++|+||||++.+|
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            4568999999976 69999999999999999999998654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.9e-07  Score=82.10  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=85.7

Q ss_pred             CchhhhHHHHHHHHHHHHhhccccCcccccceEEecCCCCCCCCCCCCCCCCCccEEEEcch-HHHHHHHHHHhCCCeEE
Q 007945           58 AGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT-LGIFIATALSFKGLRVA  136 (584)
Q Consensus        58 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVl  136 (584)
                      +.+-..++.+...+++.+.+..                              .-.|+||||| +|+-+|..|++.|.+|.
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~------------------------------~k~v~VIGgG~iG~E~A~~l~~~g~~Vt   62 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIA------------------------------DNRLVVIGGGYIGLEVAATAIKANMHVT   62 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCT------------------------------TCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCeeEeCCHHHHHHHHHhhcc------------------------------CCEEEEECCchHHHHHHHHHHhhCccee
Confidence            3344556777777777777641                              1379999975 79999999999999999


Q ss_pred             EEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHH
Q 007945          137 IVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFI  216 (584)
Q Consensus       137 LIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~  216 (584)
                      ++|+++.+-..                                           .          . ...+.+.+.+.++
T Consensus        63 vie~~~~~l~~-------------------------------------------~----------~-~~~~~~~~~~~~~   88 (133)
T d1q1ra2          63 LLDTAARVLER-------------------------------------------V----------T-APPVSAFYEHLHR   88 (133)
T ss_dssp             EECSSSSTTTT-------------------------------------------T----------S-CHHHHHHHHHHHH
T ss_pred             eeeeccccccc-------------------------------------------c----------c-chhhhhhhhhccc
Confidence            99988631100                                           0          0 0123455566677


Q ss_pred             hCCCEEEeCceEEEEEEeCCe--E-EEEEcCCcEEEccEEEEecC
Q 007945          217 SLGGVIFEGYSVSSICTYENA--A-VLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       217 ~~G~~i~~~t~v~~v~~~~~g--v-~V~~~~G~~i~ArlVIdADG  258 (584)
                      +.|++++.++++++++..++.  + .|.+++|+++.|++||-|.|
T Consensus        89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            889999999999999876542  3 37788999999999999987

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.3e-07  Score=91.77  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EE---EcCCc--EEEccEEEEecCCChH
Q 007945          207 LIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSP  262 (584)
Q Consensus       207 L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~---~~~G~--~i~ArlVIdADG~~S~  262 (584)
                      +...+.+++.+ .+++++.++.++++..+++.++ |.   ..+|+  .+.|+-||-|+|..+.
T Consensus       136 ~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            33444444444 4789999999999998887654 22   23565  5799999999998863

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.1e-07  Score=79.53  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr----~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .++||||| +|+-+|..|++    .|.+|.+||+++.+-.                                        
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~----------------------------------------   78 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG----------------------------------------   78 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT----------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc----------------------------------------
Confidence            68999965 79999988863    5999999998752110                                        


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                               ..    ++ ..+-+.+.+.+.+.|++++.++.+.++..+++.+.|++++|+++.|++||-|.|.
T Consensus        79 ---------~~----~~-~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          79 ---------KI----LP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             ---------TT----SC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ---------cc----CC-HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence                     00    11 1345667778889999999999999999999999999999999999999999984

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=5.4e-07  Score=90.66  Aligned_cols=59  Identities=14%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE----EEEcCCc--EEEccEEEEecCCChHH
Q 007945          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (584)
Q Consensus       205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~----V~~~~G~--~i~ArlVIdADG~~S~v  263 (584)
                      ..+...|.+++.+.+++++..+.+..+..++++ +.    ....+|+  .+.|+.||-|+|....+
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~l  208 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcccc
Confidence            357788888999999999999999998775543 21    1223454  58999999999988643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.1e-07  Score=90.88  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=39.0

Q ss_pred             HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       215 a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                      +++.|++++.+++|++|..+++++.|++.+|++++||.||-|..
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p  260 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP  260 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSC
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCC
Confidence            34568899999999999999999999999999999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=7.2e-07  Score=76.22  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -|+||||| +|+-+|..|++.|.+|.|+|+.+...+                                          . 
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~------------------------------------------~-   59 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------S-   59 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------T-
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhh------------------------------------------h-
Confidence            48999965 799999999999999999998852110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG  258 (584)
                                 .|+ .+-+.+.+.+++.|++++.++.++.+..+++ .++|++++|+++.++.||-|.|
T Consensus        60 -----------~d~-~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          60 -----------FDP-MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -----------SCH-HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             -----------cch-hhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                       011 2445666777778999999999999987765 4788999999999999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.45  E-value=1.1e-06  Score=75.35  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=74.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.++|+||| +|+=+|..|++.|.+|.++|+....-+                                           
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-------------------------------------------   59 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------------------------------   59 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-------------------------------------------
Confidence            379999975 799999999999999999998752110                                           


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMG  258 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG  258 (584)
                            .     .|+ .+-+.+.+.+++.|++++.++++++++.++++++|++.++   +++.|+.||-|.|
T Consensus        60 ------~-----~d~-ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 ------A-----VDE-QVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ------T-----SCH-HHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ------c-----ccc-hhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                  0     111 2345666677888999999999999999999988888653   5799999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.43  E-value=7.8e-07  Score=76.72  Aligned_cols=90  Identities=21%  Similarity=0.378  Sum_probs=69.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|+++|.+|.++|+.+.+-.                                          .
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~   68 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------------------------------------------R   68 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------T
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc------------------------------------------c
Confidence            379999965 799999999999999999998862110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG  258 (584)
                       .          ++ ..+.+.+.+.+++.|++++.+++++++.  ++  .|.++||+++.|++||-|.|
T Consensus        69 -~----------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          69 -A----------AP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             -T----------SC-HHHHHHHHHHHHTTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSC
T ss_pred             -c----------CC-HHHHHHHHHHHHHCCcEEEeCCEEEEEe--CC--EEEECCCCEEECCEEEEeeC
Confidence             0          01 1344566777888999999999998853  33  35678999999999999987

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=4.2e-07  Score=90.19  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+|||||||+ ++|+++|+.+++.| +|+||||.+..+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~g   42 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE   42 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCC
Confidence            3699999996 57999998988888 999999998654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.36  E-value=2.8e-06  Score=72.41  Aligned_cols=89  Identities=21%  Similarity=0.300  Sum_probs=69.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..+++.|.+|+|+|+.+..-+                                          .
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~------------------------------------------~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------------G   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------T
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceecc------------------------------------------c
Confidence            379999975 799999999999999999998862110                                          0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CC--cEEEccEEE
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLII  254 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G--~~i~ArlVI  254 (584)
                                  +|+ .+-+.+.+.+++.|++++.++++++++..+++++|++. +|  +++.|+.||
T Consensus        61 ------------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vl  115 (117)
T d1ebda2          61 ------------FEK-QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVL  115 (117)
T ss_dssp             ------------SCH-HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEE
T ss_pred             ------------ccc-hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEE
Confidence                        111 24456667778889999999999999999998887764 44  469999987

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=7.4e-07  Score=82.50  Aligned_cols=115  Identities=15%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++||+|||| ++|+++|..|+|.|++|+|+|+.........                       ..+...   .+..   
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~-----------------------~~~~~~---~~~~---   55 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG-----------------------GQLTTT---TDVE---   55 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT-----------------------CGGGGC---SEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccc-----------------------cccccc---hhhh---
Confidence            689999996 5799999999999999999998764321100                       000000   0000   


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                       ..+..+    ..+....|...+.+++.+.|.++... .|.+++..++...+.+ +..++.++.++-|.|..
T Consensus        56 -~~~~~~----~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          56 -NFPGFP----EGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  120 (192)
T ss_dssp             -CSTTCT----TCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             -cccccc----ccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecc-cceeeeeeeEEEEeeee
Confidence             000000    11345677888888999999998765 5778877777666664 45678899898888764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.2e-06  Score=78.80  Aligned_cols=110  Identities=12%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~  188 (584)
                      ++||+|||| ++|+.+|..|+|.|++|+||||....+...  ..                ..++     .+    ..|  
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~--~~----------------~~i~-----~~----~~~--   55 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT--TT----------------TEVE-----NW----PGD--   55 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG--GC----------------SBCC-----CS----TTC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc--cc----------------chhh-----hh----hcc--
Confidence            589999996 579999999999999999999876433100  00                0000     00    001  


Q ss_pred             CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                            +.    .+....+.+.+..++.+.+.++..+ .|+.+...++..+|+. ...++.++.+|.|.|..
T Consensus        56 ------~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~  115 (190)
T d1trba1          56 ------PN----DLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGAS  115 (190)
T ss_dssp             ------CS----SCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEE
T ss_pred             ------cc----ccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeeccee
Confidence                  01    1334567777888888888888765 5888877777777765 45578899999888853

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.29  E-value=1e-06  Score=83.66  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ..+||||||| +|+++|..|+++|++|+||||...+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5699999965 7999999999999999999998643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.25  E-value=3.3e-06  Score=71.87  Aligned_cols=93  Identities=14%  Similarity=0.225  Sum_probs=71.8

Q ss_pred             cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LA---r~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|+||||| +|+-+|..++   +.|.+|.++|+.+..-+                                         
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-----------------------------------------   58 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-----------------------------------------   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-----------------------------------------
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccc-----------------------------------------
Confidence            69999975 7999987655   45999999998752110                                         


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCC
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~  259 (584)
                              .     +|+ .+.+.+.+.+++.|++++.++.++++..+++++ .|.+++|+++.|++||-|.|+
T Consensus        59 --------~-----~d~-~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          59 --------G-----FDS-ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             --------T-----SCH-HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             --------c-----ccc-hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                    0     112 244666777888999999999999998876654 588889999999999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.22  E-value=7.1e-06  Score=70.04  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=70.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -|+||||| +|+-+|..|++.|.+|.|+||.+..-+                               .            
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-------------------------------~------------   60 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------   60 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccccc-------------------------------c------------
Confidence            59999976 699999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEE-ccEEEEe
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILS-SHLIIDA  256 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~-ArlVIdA  256 (584)
                                 .| ..+-+.+.+.+++.|++++.++++++++..++ .++|++++|+++. ++.||-|
T Consensus        61 -----------~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          61 -----------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             -----------cc-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                       11 13456677778888999999999999987655 5789999998875 5998865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.17  E-value=5.6e-06  Score=71.59  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=74.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .++|+||| +|+=+|..+++.|.+|.++|+.+..-+                                            
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~--------------------------------------------   63 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ--------------------------------------------   63 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST--------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc--------------------------------------------
Confidence            69999976 699999999999999999998752110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEccEEEEecCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN  259 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G--~~i~ArlVIdADG~  259 (584)
                           .     .|+ .+-+.+.+.+++.|++++.++++++++.+++++.|++.+  |  +++.|+.|+-|.|+
T Consensus        64 -----~-----~d~-~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          64 -----G-----ADR-DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             -----T-----SCH-HHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             -----c-----chh-hHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence                 0     111 245667778888899999999999999999998887753  3  47999999999984

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.17  E-value=6e-06  Score=71.09  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|||+.+.+-.                                            
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~--------------------------------------------   67 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG--------------------------------------------   67 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT--------------------------------------------
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCcccc--------------------------------------------
Confidence            78999965 799999999999999999998752100                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEe
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdA  256 (584)
                           ..    +|+ .+-+.+.+.+++.|++++.+++++++..+ +.+.+.+.+|+++.|++||-|
T Consensus        68 -----~~----~d~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          68 -----VY----LDK-EFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -----TT----CCH-HHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEESSCEEECSEEEEC
T ss_pred             -----cc----cch-hhHHHHHHHhhcCCeEEEeCceEEEEEcC-CCEEEEEeCCCEEECCEEEEE
Confidence                 00    111 23456667778889999999999998654 344434568999999999976

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7.1e-06  Score=74.39  Aligned_cols=109  Identities=23%  Similarity=0.219  Sum_probs=68.6

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      |||||||| |+|+.+|..+++.|++|++||++.- +  +..+                          .   ..+  .  
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~g-g--~~~~--------------------------~---~~~--~--   45 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG-G--QILD--------------------------T---VDI--E--   45 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT-G--GGGG--------------------------C---CEE--C--
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEecC-C--cccc--------------------------c---ccc--e--
Confidence            99999996 6799999999999999999997531 1  0000                          0   000  0  


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC---eEEEEEcCCcEEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~---gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .....     ..++...+...+..++.+.+.+......+..+.....   .......++.++.++.++.+.|..
T Consensus        46 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  114 (184)
T d1fl2a1          46 NYISV-----PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (184)
T ss_dssp             CBTTB-----SSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             ecccc-----chhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence            00000     0123345666677778888888888887877654332   223334456678888888777643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=3.3e-06  Score=77.77  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=63.8

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f  186 (584)
                      .....|+|||| |+|+++|..|+++|++|+|+|+.+.++-.         +. +               .... +     
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~---------l~-~---------------~~~~-p-----   89 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ---------FN-I---------------AKQI-P-----   89 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT---------HH-H---------------HTTS-T-----
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce---------EE-E---------------EEeC-c-----
Confidence            34579999995 67999999999999999999999866521         00 0               0000 0     


Q ss_pred             cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                       +..            +...+.+.+.+++++.|++++.++.|+.             + .....+.||-|+|..
T Consensus        90 -~~~------------~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-------------~-~~~~~d~vilAtG~~  136 (179)
T d1ps9a3          90 -GKE------------EFYETLRYYRRMIEVTGVTLKLNHTVTA-------------D-QLQAFDETILASGIP  136 (179)
T ss_dssp             -TCT------------THHHHHHHHHHHHHHHTCEEEESCCCCS-------------S-SSCCSSEEEECCCEE
T ss_pred             -ccc------------hHHHHHHHHHHhhhcCCeEEEeCCEEcc-------------c-ccccceeEEEeecCC
Confidence             000            1234556777788888999999887642             1 123467788899864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.09  E-value=1.2e-06  Score=82.09  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..|||||||| |+|+++|..+||+|++|+|||+...++
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            4799999995 679999999999999999999987544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.3e-05  Score=67.43  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.++||.+..-+                                            
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~--------------------------------------------   59 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR--------------------------------------------   59 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--------------------------------------------
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc--------------------------------------------
Confidence            69999975 799999999999999999998752100                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCc------EEEccEEEEecC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK------ILSSHLIIDAMG  258 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G~------~i~ArlVIdADG  258 (584)
                           .     +|+ .+-+.+.+.+++.|++++.+++++++...++++.+++.   .|+      .+.+|+||-|.|
T Consensus        60 -----~-----~d~-~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          60 -----S-----FDS-MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             -----T-----SCH-HHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             -----c-----hhh-HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence                 0     111 24456677778889999999999999999888766542   232      477999998877

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.06  E-value=1.3e-06  Score=84.66  Aligned_cols=35  Identities=37%  Similarity=0.605  Sum_probs=31.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      |||||||| ++|.++|..+|+.|++|+|||+....|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            99999996 569999999999999999999987654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.05  E-value=1.1e-06  Score=83.34  Aligned_cols=38  Identities=45%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +.+|||||||| |+|+++|..+++.|++|+|||+.+..+
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~G   42 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG   42 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            34799999995 679999999999999999999987544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=3.8e-05  Score=65.76  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -++||||| +|+=+|..|++.|.+|.++|+++..-+                                            
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~--------------------------------------------   60 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA--------------------------------------------   60 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS--------------------------------------------
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccch--------------------------------------------
Confidence            69999975 799999999999999999998752110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCC-----cEEEccEEEEe
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEG-----KILSSHLIIDA  256 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv--~V~~~~G-----~~i~ArlVIdA  256 (584)
                           .     .|+ .+-+.+.+.+++.|++++.++++++++..+++.  .+++.++     +++.|++|+-|
T Consensus        61 -----~-----~d~-ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          61 -----S-----MDG-EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             -----S-----SCH-HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -----h-----hhh-hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                 0     111 244666777788899999999999999887754  4444432     37999999865

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.03  E-value=1.7e-05  Score=67.90  Aligned_cols=87  Identities=21%  Similarity=0.351  Sum_probs=66.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      +|+||||| +|+-+|..|++.|.+|.|+|+++...     +                                       
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~-----~---------------------------------------   69 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-----G---------------------------------------   69 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-----T---------------------------------------
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccccc-----C---------------------------------------
Confidence            78999965 79999999999999999999875211     0                                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                                 +| ..+.+.+.+.+++.|++++.++++.++  +++++   +.+++++.|++||-|.|.
T Consensus        70 -----------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~~--~~~~v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          70 -----------LD-EELSNMIKDMLEETGVKFFLNSELLEA--NEEGV---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -----------CC-HHHHHHHHHHHHHTTEEEECSCCEEEE--CSSEE---EETTEEEECSCEEEECCE
T ss_pred             -----------CC-HHHHHHHHHHHHHCCcEEEeCCEEEEE--eCCEE---EeCCCEEECCEEEEEEEe
Confidence                       01 123345566777889999999999886  34443   347889999999999984

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=2.6e-06  Score=80.66  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR  146 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~  146 (584)
                      .+|||||||| |+|+++|..+|+.|++|+|||+.+.++.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            4799999995 6799999999999999999999876553

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.03  E-value=1.5e-06  Score=81.45  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ++|||||||| |+|+++|..+++.|++|+|||+....+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            4799999995 679999999999999999999987544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=1.2e-06  Score=82.45  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             CCCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          107 AVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       107 ~~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      ++.+|||+|||| |+|+++|..+++.|++|+|||++...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            345799999995 67999999999999999999987653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.02  E-value=3.7e-05  Score=76.85  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             CccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr----~GlrVlLIEr~~~~~  145 (584)
                      ++||||||| ++|+++|+.+|+    +|++|+||||.+..+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            589999995 579999988874    799999999987653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.01  E-value=2.2e-05  Score=66.76  Aligned_cols=93  Identities=18%  Similarity=0.209  Sum_probs=69.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      -.|+||||| +|+-+|..|++.|.+|.++|+.+...+.                                          
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~------------------------------------------   60 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------------------------------   60 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc------------------------------------------
Confidence            379999975 7999999999999999999987521100                                          


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EE---EcCCcEEEccEEEEecC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LL---LAEGKILSSHLIIDAMG  258 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~--V~---~~~G~~i~ArlVIdADG  258 (584)
                                  .|+ .+-+.+.+.+++.|++++.++++++++.++++..  +.   ..+++++.|++||-|.|
T Consensus        61 ------------~d~-~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 ------------KDN-ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ------------CSH-HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ------------ccc-chhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                        111 2345556667788999999999999988776432  21   12356899999999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.98  E-value=7.7e-06  Score=69.40  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+..-+                                            
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~--------------------------------------------   58 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP--------------------------------------------   58 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST--------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc--------------------------------------------
Confidence            79999975 799999999999999999998752110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--CcEEEccEEEEecC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--GKILSSHLIIDAMG  258 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G~~i~ArlVIdADG  258 (584)
                           .     +|+ .+.+.+.+.+++.|++++.+++|+++.  ++...+...+  ++++.|+.||-|.|
T Consensus        59 -----~-----~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          59 -----T-----YDS-ELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -----T-----SCH-HHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -----c-----ccc-hhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                 0     111 234566667778899999999998873  4444444333  35799999999987

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.98  E-value=1.9e-06  Score=86.66  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +.+|||||||+ +.|+++|..||++|+||+|||+...
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            45899999995 5799999999999999999999754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.97  E-value=4.2e-05  Score=64.85  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=68.6

Q ss_pred             cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945          112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LA---r~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~  187 (584)
                      .|+||||| +|+-+|..++   ++|.+|.|||+.+..-+                               .         
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-------------------------------~---------   61 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-------------------------------G---------   61 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-------------------------------T---------
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-------------------------------c---------
Confidence            69999965 7999997655   55678999998642110                               0         


Q ss_pred             CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEe
Q 007945          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDA  256 (584)
Q Consensus       188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdA  256 (584)
                                    +| ..+.+.+.+.+++.|++++.++++++++..++ .+.|++++|+++.|+.||-|
T Consensus        62 --------------~d-~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          62 --------------FD-HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             --------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             --------------cc-hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                          11 13456677778889999999999999987655 57799999999999999865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.93  E-value=2.4e-05  Score=67.13  Aligned_cols=90  Identities=14%  Similarity=0.209  Sum_probs=69.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .++||||| .|+=+|..+++.|.+|+++||++..-+                                          . 
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------------------------------------------~-   63 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------T-   63 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------T-
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------------------------------------------h-
Confidence            69999976 699999999999999999998862110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEccEEEEe
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDA  256 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~G--~~i~ArlVIdA  256 (584)
                                 .|+ .+-+.+.+.+++.|++++.++++.+++.++++++|++.   +|  +++.|+.|+-|
T Consensus        64 -----------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          64 -----------MDA-EIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             -----------SCH-HHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             -----------hhh-cchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence                       111 34456677888899999999999999988888776653   33  35999988755

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.6e-06  Score=80.53  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ..+.+||||||| +|+++|..|+++|++|+|+|++..+|
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            346799999976 69999999999999999999988654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3e-06  Score=79.33  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=31.8

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||||||| ++|+++|..+++.|++|+|||+....|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GG   38 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGG   38 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence            699999995 579999999999999999999986544

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=3.8e-06  Score=78.45  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||||||| |+|+++|..+++.|++|+||||....+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            699999995 579999999999999999999987654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.84  E-value=5.9e-06  Score=76.66  Aligned_cols=34  Identities=38%  Similarity=0.465  Sum_probs=30.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~  145 (584)
                      ||+|||| ++|+++|..|+++|+ +|+|+||++.+|
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            8999996 579999999999997 699999987653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.4e-06  Score=77.51  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=32.2

Q ss_pred             CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      +|||||||| |+|+++|..+++.|.+|+|||+...++
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence            699999995 679999999999999999999987655

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.79  E-value=7.3e-06  Score=78.22  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=30.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ||+||||| +|+++|+.|+++|++|+|+|+++.+|
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            89999965 79999999999999999999987653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.2e-05  Score=79.58  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .||||||||| +|+++|..|+++|++|+|+|+++.+|
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            4899999965 79999999999999999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=0.00023  Score=60.73  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      .++||||| +|+=+|..|++.|.+|.||++.+..+                                           . 
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~-------------------------------------------~-   57 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------------------------------------------G-   57 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST-------------------------------------------T-
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc-------------------------------------------c-
Confidence            69999965 79999999999999999998653100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEcC---Cc--EEEccEEEEecC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAE---GK--ILSSHLIIDAMG  258 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~~---G~--~i~ArlVIdADG  258 (584)
                                 +|+ .+-+.+.+.+++.|++++.++.++++...++    .+.+++.+   ++  .+.++.|+-|.|
T Consensus        58 -----------~D~-~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          58 -----------FDQ-DMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             -----------CCH-HHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                       111 2446677778889999999999999976433    34555543   22  467899998876

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.66  E-value=9.9e-06  Score=75.95  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+|||||||| ++|+++|..+++.|.+|+|||+....|
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG   41 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGG   41 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            3799999995 579999999999999999999987554

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.7e-05  Score=73.08  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh---cccCCce
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNR  183 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~~~  183 (584)
                      ++++|||||| +|+.+|..|.++|.  +|++|++.+...-.|. .+|..    +     +..........   ..+....
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~-~Ls~~----~-----~~~~~~~~~~~~~~~~~~~~~   73 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-PLSKE----L-----WFSDDPNVTKTLRFKQWNGKE   73 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-GGGTG----G-----GCC--CTHHHHCEEECTTSCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc-cccee----c-----ccccCchhhhhhhhhhcccch
Confidence            6899999965 79999999987765  6999998765432221 12210    0     00000000000   0000000


Q ss_pred             eeecC-CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          184 CGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       184 v~f~~-~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      ..... ....+        ....     ....+.+.|++++.+++|++++.++.  +|++++|+++.++.||-|+|..
T Consensus        74 ~~~~~~~~~~~--------~~~~-----~~~~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~  136 (213)
T d1m6ia1          74 RSIYFQPPSFY--------VSAQ-----DLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGT  136 (213)
T ss_dssp             EESBSSCGGGS--------BCTT-----TTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEE
T ss_pred             hhhhcCChhhh--------hhhh-----hHHHHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeee
Confidence            00000 00000        0000     01234567899999999999965554  5678899999999999999853

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.59  E-value=2.1e-05  Score=76.42  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=35.8

Q ss_pred             HhCCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEccEEEEecC
Q 007945          216 ISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMG  258 (584)
Q Consensus       216 ~~~G~~i~~~t~v~~v~~~~~gv~V~~~----~G~~i~ArlVIdADG  258 (584)
                      ++.|++++.+++|++|..++++++|.+.    ++++++||.||-|.+
T Consensus       246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence            4568899999999999999998887763    246899999998874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.55  E-value=2.7e-05  Score=73.97  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.1

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .|+|||| ++|+++|..|+++|++|+|+|+++.+|
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G   37 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            5999996 579999999999999999999987653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.53  E-value=2.3e-05  Score=79.17  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      +|||||||+| .|+++|..|+++|++|+|||+.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            7999999965 6888888999999999999986

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.50  E-value=2.9e-05  Score=78.65  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .||+|||||| +|+.+|..||+.|.+|+|||+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            6999999965 68999999999999999999985

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.46  E-value=3.4e-05  Score=73.00  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGR  146 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~  146 (584)
                      .+|||||||| |+|+++|..+|+.|. +|+|+|+....+.
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~   41 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP   41 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Confidence            3799999995 678999999999987 5999998876543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.45  E-value=1.2e-05  Score=75.51  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=37.8

Q ss_pred             ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (584)
Q Consensus       200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~  262 (584)
                      ..+|+..+...|.+++.+.|+++..+ +++++.           +.....+++||.|+|..|.
T Consensus       137 ~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~-----------~~~~~~~d~vVnctG~~a~  187 (246)
T d1kifa1         137 LILEGRKYLQWLTERLTERGVKFFLR-KVESFE-----------EVARGGADVIINCTGVWAG  187 (246)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHH-----------HHHHTTCSEEEECCGGGHH
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHH-----------HhccCCCCEEEECCccccc
Confidence            35899999999999999999987654 233321           1123457899999999984

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.43  E-value=7.1e-05  Score=70.00  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~  145 (584)
                      ..|||||||| |+|+++|..+|+.|. +|+|+|+....+
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~   40 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHG   40 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccC
Confidence            4799999995 679999999999887 588999875443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.39  E-value=9.6e-05  Score=71.08  Aligned_cols=37  Identities=35%  Similarity=0.476  Sum_probs=32.4

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      .+|||||||| ++|+.+|..+++.|.+|++||+.+..+
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            3799999996 579999999999999999999987644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.30  E-value=6.5e-05  Score=75.47  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .||||||+| .|+++|..||++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999965 69999999999999999999963

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.23  E-value=7.9e-05  Score=76.33  Aligned_cols=34  Identities=29%  Similarity=0.605  Sum_probs=30.5

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~  143 (584)
                      +||+|||||| +|+.+|..|++.| ++|+|||+.+.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            6999999965 6999999999988 89999999964

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.22  E-value=8.1e-05  Score=75.92  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=30.0

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~  143 (584)
                      +||+|||||| +|+.+|..|++.| ++|+|||+.+.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            6999999965 6999999999875 99999999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=8.7e-05  Score=73.32  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             ccCCCEEEeCCCCCCcCCCCCCc--hhhHHHHHHHHHHHHHHHHh
Q 007945          385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  427 (584)
Q Consensus       385 ~~~~rvlLvGDAA~~v~PltGgG--~g~~lr~~~~La~~i~~AL~  427 (584)
                      ...++++++||||..+++....|  ++.++.+..+.|+.|.+.|+
T Consensus       266 ~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         266 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             TTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            34589999999999888776555  67788888899999988775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.21  E-value=6.4e-05  Score=75.89  Aligned_cols=36  Identities=36%  Similarity=0.631  Sum_probs=30.8

Q ss_pred             CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      +..||+|||||| +|+.+|..||++ ++|+|||+...+
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             cCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            346999999965 699999999987 999999999753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.17  E-value=0.0002  Score=65.62  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             EEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945          113 VIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~  189 (584)
                      |+||||| +|+.+|..|++.  +.+|+++||........      ..+..+..              .+...       .
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~------~~~~~~l~--------------~~~~~-------~   55 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS------AGMQLYLE--------------GKVKD-------V   55 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG------GGHHHHHT--------------TSSCC-------G
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccc------cCcchhhc--------------ccccc-------h
Confidence            8999975 799999999876  66899999987543111      11111100              00000       0


Q ss_pred             CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecCCC
Q 007945          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (584)
Q Consensus       190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG~~  260 (584)
                      ..+.               ....+.+.+.|++++.+++|++++.+++.++++. .+|+  ++.++.+|-|.|..
T Consensus        56 ~~~~---------------~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          56 NSVR---------------YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             GGSB---------------SCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHH---------------HhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecce
Confidence            0000               0012344557999999999999988777877764 3443  58899999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.10  E-value=0.00023  Score=67.10  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      ...+|+|||| ++|+++|..|+++|++|+|+|+++..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            3579999995 579999999999999999999988655

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.09  E-value=0.0002  Score=64.91  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~Glr-VlLIEr~~~~~  145 (584)
                      --|+|||| ++|+++|..|+++|++ |+|+||++..+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            36999995 6799999999999995 99999987654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00037  Score=65.67  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=27.4

Q ss_pred             ccEEEEcc-hHHHHHHHHHHh---CCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSF---KGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr---~GlrVlLIEr~~~~~  145 (584)
                      .+|||||| |+|+++|..+|+   +|++|+|||+....|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG   40 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence            58999995 678888877665   457899999987655

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.97  E-value=0.00026  Score=70.19  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      -.|+||||| +|+++|..|+++|++|+|+|++...|
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            469999965 69999999999999999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.00041  Score=61.34  Aligned_cols=101  Identities=17%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~  190 (584)
                      -|+||||| +|+-+|..|++ +.+|+|+|+.+.+...+.      .+.... .+..              .       ..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~------~~~~~~-~~~~--------------~-------~~   52 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP------MLSHYI-AGFI--------------P-------RN   52 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST------THHHHH-TTSS--------------C-------GG
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc------chhhhh-hhhh--------------h-------hh
Confidence            38999965 79999998875 779999998875432211      011100 0000              0       00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (584)
Q Consensus       191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~  259 (584)
                      .+. ..      .        .+...+.+++++.++.++.++.  +.. +.+.+++++.++.||-|.|.
T Consensus        53 ~~~-~~------~--------~~~~~~~~v~~~~~~~v~~i~~--~~~-~~~~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          53 RLF-PY------S--------LDWYRKRGIEIRLAEEAKLIDR--GRK-VVITEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             GGC-SS------C--------HHHHHHHTEEEECSCCEEEEET--TTT-EEEESSCEEECSEEEECCCE
T ss_pred             hhh-HH------H--------HHHHHhccceeeeecccccccc--ccc-cccccccccccceeEEEEEe
Confidence            000 00      0        1122345788999999988743  222 23446778999999999884

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.00019  Score=66.99  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCC-------CeEEEEcCCCCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKG-------LRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~G-------lrVlLIEr~~~~~  145 (584)
                      +.|+||| ||+|+++|..|+++|       ++|.|+||.+.++
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            7899999 578999999999988       5899999998766

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.50  E-value=0.00087  Score=62.43  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKG  145 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~  145 (584)
                      -|+|||| |+|+++|..|+++  |++|+|+|+.+.++
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            6999995 6799999999765  88999999998665

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.29  E-value=0.00078  Score=60.57  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~  260 (584)
                      .++++..+++++++..+  ...+.+++|+++.++.||-|.|..
T Consensus        68 ~~i~~~~~~~v~~i~~~--~~~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQ--AHTVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TTCEEEETCCEEEEETT--TTEEEETTSCEEECSEEEECCCEE
T ss_pred             CCeEEEEeccccccccc--cceeEecCCcEeeeeeEEEEEEEE
Confidence            46788899999886543  345667899999999999888743

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.97  E-value=0.0057  Score=54.15  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=29.7

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      =||||||| ++|+-+|..|++.|.+|.++++.+.+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   39 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence            38999996 579999999999999998888776543

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.68  E-value=0.0052  Score=64.02  Aligned_cols=49  Identities=41%  Similarity=0.545  Sum_probs=38.2

Q ss_pred             CCccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHH
Q 007945          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLE  159 (584)
Q Consensus       109 ~~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~  159 (584)
                      .+|||||+| |=+=+.+|++|++.|.||+-|||+..-|..  |+ ++-.++..
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~--~aSl~~~~L~~   55 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN--WASFSFSGLLS   55 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG--GCEECHHHHHH
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCc--ccceeHHHHHH
Confidence            379999999 557999999999999999999999986643  33 44444433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.028  Score=48.92  Aligned_cols=49  Identities=16%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEccEEEEecCC
Q 007945          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGN  259 (584)
Q Consensus       209 ~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i~ArlVIdADG~  259 (584)
                      ......+...|+.++.++.+..+  +++++.+...+. +++.||.||-|.|.
T Consensus       112 ~~~~~~~~~~gv~~~~~~~v~~i--~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         112 WIHRTTLLSRGVKMIPGVSYQKI--DDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEE--ETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHHHHhhCCeEEEeeeEEEEE--cCCCCEEecCCeEEEEECCEEEECCCC
Confidence            34456677789999999999886  577887776443 35999999999984

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.85  E-value=0.014  Score=50.74  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             ccEEEE--cch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945          111 FDVIVC--GGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (584)
Q Consensus       111 yDVVIV--GGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~  145 (584)
                      -.|+|+  ||+ .|+.+|..|+++|.+|.+|++.+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            467776  665 79999999999999999999987544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.67  E-value=0.01  Score=51.71  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=27.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~  143 (584)
                      .||||||| +|+.+|..|.+.|  .+|+|||+++.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            58999975 7999999999877  58999998863

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.021  Score=49.65  Aligned_cols=32  Identities=31%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|+|+|+| .|+.+|+.|++.|++|.+++|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            38899955 799999999999999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.14  E-value=0.018  Score=51.03  Aligned_cols=31  Identities=26%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -+.|+|+| .|+++|+.|+++|++|.++||.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899965 79999999999999999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.029  Score=44.52  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      -|+|+| |..|.++|..|+++|.+|.+.|.+..+
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            599999 678999999999999999999987643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.68  E-value=0.023  Score=49.69  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=28.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|+|+| .|..+|..|+++|++|.|+||..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            58999954 89999999999999999999986

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=0.051  Score=48.54  Aligned_cols=50  Identities=10%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEE
Q 007945          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIID  255 (584)
Q Consensus       206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVId  255 (584)
                      .+-+.|.+.+++.|++|+.+++|++|..+++  .+++.+.+|++++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence            4667888899999999999999999987754  3554456899999999984

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.02  E-value=0.037  Score=46.71  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=27.7

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|+|+ ..|..+|-.|.++|++|++||+++
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            899995 589999999999999999999885

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.51  E-value=0.043  Score=49.38  Aligned_cols=31  Identities=26%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|||+| .|...|+.++++|++|.++|+.+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999976 69999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=1.1  Score=37.02  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=28.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -+|+||||| .++=.|..|++.+-+|.+|-|++
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            489999987 78888889999999999997764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.067  Score=48.37  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=28.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|.|||+| .|...|..+|++|++|.++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999965 69999999999999999999886

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.35  E-value=0.067  Score=46.64  Aligned_cols=30  Identities=30%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             EEEEc--chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCG--GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVG--Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|+|  |+.|.++|..|+++|++|++..|++
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            77885  4689999999999999999999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.90  E-value=0.083  Score=47.90  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=27.3

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|+|.| +|+.+|+.||++|++|..+|.+.
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            7899966 89999999999999999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.53  E-value=0.083  Score=44.23  Aligned_cols=31  Identities=29%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .+||||. -.|..+|-.|.+.|++|++||+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            4789995 589999999999999999999875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.11  Score=49.15  Aligned_cols=30  Identities=33%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|.++|..|+++|++|.+++|+.
T Consensus        17 alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            899995  899999999999999999999874

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.02  E-value=0.074  Score=47.97  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             ccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|.|+|+|. |.++|..|++.|.+|.+..|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            4799999875 9999999999999999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.97  E-value=0.28  Score=42.36  Aligned_cols=33  Identities=33%  Similarity=0.249  Sum_probs=28.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLK  144 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~~~  144 (584)
                      .||||||| .|+=+|..+.+.|.+ |.++.|.+..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            69999987 799999999999876 7899887643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.05  E-value=0.17  Score=46.89  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |||.||  |+|.++|..|+++|++|++++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            577784  7999999999999999999998753

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.03  E-value=0.14  Score=47.30  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=28.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |+|.||  |+|.++|..|+++|++|.+++|...
T Consensus         5 VlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            889995  7999999999999999999998764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.17  Score=46.83  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..||++|++|.+++|+.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            688894  799999999999999999999875

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.30  E-value=0.16  Score=46.45  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +||.||  |+|.++|..|+++|++|++.+|+..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            678895  7999999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.24  E-value=0.24  Score=45.71  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|||.||  |+|.++|..|+++|++|.++|+...
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4899994  7999999999999999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.15  E-value=0.23  Score=43.10  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=26.2

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+| ||+|+.++..+...|.+|.++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            588999 6789998877777899999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.97  E-value=0.22  Score=46.76  Aligned_cols=31  Identities=32%  Similarity=0.615  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|.++|..|+++|++|++.+|+.
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999975

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.93  E-value=0.27  Score=43.87  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|+|.||  |+|..+|..|+++|.+|.+++|+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            36899994  799999999999999999999885

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.28  Score=42.89  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -.|+|+| ||++-+++++|++.|.+|.++.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4899999 7899999999999999999998774

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.82  E-value=0.2  Score=44.35  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      .|.|+|+| -|.++|..|+++|.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            48899976 5999999999999999999764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.70  E-value=0.26  Score=46.36  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|||.||  |+|.++|..|+++|.+|++++|+.
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.68  E-value=0.27  Score=45.99  Aligned_cols=31  Identities=39%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789995  799999999999999999999874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=0.27  Score=45.66  Aligned_cols=31  Identities=35%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|.++|..|+++|++|++++|+.
T Consensus         9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4788894  799999999999999999999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=0.27  Score=45.91  Aligned_cols=30  Identities=40%  Similarity=0.589  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.51  E-value=0.17  Score=47.40  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 007945          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       113 VVIVG-Gg~Gl~-----~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      |+|.| ||+|-+     +|+.||++|+||+|||-.+..
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            56888 776544     466899999999999988653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.28  Score=45.70  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|..+|..|+++|.+|++.+|+.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            667784  799999999999999999999874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=3.9  Score=33.39  Aligned_cols=32  Identities=28%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -+|+||||| .++=.|..|++-.-+|.+|-|.+
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            489999986 68888889999989999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.33  E-value=0.28  Score=45.99  Aligned_cols=31  Identities=29%  Similarity=0.532  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.30  E-value=0.29  Score=45.78  Aligned_cols=30  Identities=37%  Similarity=0.491  Sum_probs=26.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            477784  799999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.20  E-value=0.34  Score=41.80  Aligned_cols=30  Identities=27%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|||. -.|.++|..|+++|++|.+.||.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            789995 479999999999999999999874

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.28  Score=37.54  Aligned_cols=32  Identities=28%  Similarity=0.228  Sum_probs=28.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      -|-|+||| +|-.++.+..+.|++|.++|..+.
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            37799987 899999999999999999998754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.09  E-value=0.16  Score=48.16  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~  143 (584)
                      |+|.| ||+|-++     |+.||++|.||+|||-.+.
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            56778 8776654     7789999999999997764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.00  E-value=0.31  Score=45.27  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|++|++++|+.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788894  799999999999999999999763

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.00  E-value=0.22  Score=44.19  Aligned_cols=40  Identities=8%  Similarity=0.051  Sum_probs=33.7

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (584)
Q Consensus       218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD  257 (584)
                      .+..+...+.+..+...++.++|++.+|+.+.++.+|-+.
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~  262 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSA  262 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECS
T ss_pred             cccccccccccccccccCccEEEEECCCCEEEcCEEEeec
Confidence            3568889999999998888999999899999988888654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.00  E-value=0.29  Score=46.42  Aligned_cols=31  Identities=32%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++++|+.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4888884  799999999999999999999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.95  E-value=0.26  Score=46.06  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|.++|..|+++|.+|++.+|+.
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            677795  799999999999999999999864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.31  Score=45.65  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=27.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  |+|.++|..|+++|++|.+.+|+.
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            899995  799999999999999999999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.84  E-value=0.26  Score=46.16  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            677784  799999999999999999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.81  E-value=0.31  Score=45.68  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3778895  799999999999999999999864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.77  E-value=0.32  Score=45.21  Aligned_cols=31  Identities=26%  Similarity=0.450  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|++.|++|++.+|.+
T Consensus         7 valVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3678885  799999999999999999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=85.69  E-value=0.31  Score=46.08  Aligned_cols=31  Identities=26%  Similarity=0.585  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|.++|..|+++|++|.+++|+.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.64  E-value=0.33  Score=44.68  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889995  799999999999999999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.60  E-value=0.28  Score=45.94  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =++|.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.46  E-value=0.35  Score=45.04  Aligned_cols=30  Identities=37%  Similarity=0.540  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|.++|..|+++|++|++.+|+.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788884  799999999999999999999875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.38  E-value=0.38  Score=40.89  Aligned_cols=32  Identities=28%  Similarity=0.589  Sum_probs=28.7

Q ss_pred             ccEEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGG-T-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGG-g-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|.|||| | .|.++|..|.++|+.|.++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999995 6 69999999999999999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.30  E-value=0.27  Score=46.16  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3677784  799999999999999999999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.34  Score=46.49  Aligned_cols=31  Identities=35%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|++|++.+|+.
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4888895  799999999999999999999874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.18  E-value=0.58  Score=38.11  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~  144 (584)
                      .+-|.|+||| +|-.+|.+..+.|++|.++|+.+..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            3579999987 8999999999999999999988653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=85.16  E-value=0.35  Score=45.29  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..|+++|++|++.+|+.
T Consensus        11 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788895  799999999999999999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=0.25  Score=46.25  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             CccEEEE-c-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945          110 TFDVIVC-G-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       110 ~yDVVIV-G-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~  143 (584)
                      ..-|||+ | ||+|-++     |..||++|.||++||-.+.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3566666 5 6776655     7788999999999998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=85.03  E-value=0.42  Score=41.87  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -+|-||| |-.|..+|..|+++|++|.+.||.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4789999 7789999999999999999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.99  E-value=0.37  Score=44.70  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 ~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788895  799999999999999999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.90  E-value=0.37  Score=45.14  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =++|.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789995  799999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.85  E-value=0.36  Score=39.14  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      --|+||||| +|..-|..|.+.|.+|++++...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            479999965 79999999999999999998654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.76  E-value=0.32  Score=45.22  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |||.||  |+|.++|..|+++|++|++++|++
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           9 IILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            788884  799999999999999999999863

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.76  E-value=0.3  Score=46.13  Aligned_cols=31  Identities=29%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           7 TVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788884  799999999999999999999874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.38  Score=44.89  Aligned_cols=30  Identities=37%  Similarity=0.604  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..|+++|.+|.+.+|+.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788894  799999999999999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.36  Score=41.97  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=25.4

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .|+|+| ||+|+.++..+...|. +|.++|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            589999 5678888877778898 799999774

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.66  E-value=0.32  Score=45.49  Aligned_cols=31  Identities=29%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3777785  799999999999999999999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.54  E-value=0.39  Score=44.79  Aligned_cols=30  Identities=37%  Similarity=0.584  Sum_probs=26.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|.++|..||++|++|.+.+|+.
T Consensus         5 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           5 ALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            367785  799999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.46  E-value=0.27  Score=41.96  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=26.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~  141 (584)
                      --|+||||| +|..-|..|.+.|.+|.||.+.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            369999965 7999999999999999999654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.42  E-value=0.4  Score=44.58  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =++|.||  |+|.++|..|+++|++|.+.+|++
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3778894  799999999999999999999874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.34  Score=44.88  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=28.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      .-|+|+| ||+|+.+|..|++.|+ +..|+|...
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5799999 7899999999999999 678888664

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=84.31  E-value=0.32  Score=45.35  Aligned_cols=31  Identities=35%  Similarity=0.581  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         8 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3778884  799999999999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.27  E-value=0.34  Score=44.85  Aligned_cols=32  Identities=38%  Similarity=0.621  Sum_probs=28.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      =|||.||  |+|.++|..|++.|++|.+.+|...
T Consensus         9 ~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           9 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4888895  7999999999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.21  E-value=0.39  Score=41.38  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      .|+|+| ||+|++++..+...|.+|.++|+++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            588999 5789887776667899999999774

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.20  E-value=0.32  Score=45.94  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ++|.||  |+|.++|..|++.|++|++.+|+.
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788884  799999999999999999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.17  E-value=0.33  Score=45.55  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|||.||  |+|.++|..|+++|.+|++++|+.
T Consensus        10 ~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_          10 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4788885  799999999999999999999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.02  E-value=0.48  Score=42.19  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=26.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ..|+|+|+| +|+.+|....+.|..|.++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            589999976 57776667778899999999886

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.86  E-value=0.4  Score=44.75  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|..+|..|+++|.+|+++.|..
T Consensus         7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3889995  799999999999999999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.69  E-value=0.42  Score=41.48  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -|+|+| ||+|++++..+...|.+|.++|+++
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccch
Confidence            588999 5688886665556799999999875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=83.52  E-value=0.37  Score=45.25  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..|+++|++|++.+|..
T Consensus        10 alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_          10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            778884  799999999999999999999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=0.36  Score=45.17  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|.++|..|++.|++|++.+|+.
T Consensus        13 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          13 CAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             EEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4778884  799999999999999999999864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=0.39  Score=44.53  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.||  |+|.++|..|+++|++|++.+|+.
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            677784  799999999999999999999864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.28  E-value=0.38  Score=44.46  Aligned_cols=30  Identities=33%  Similarity=0.604  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|.++|..|+++|++|++.+|+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            477884  799999999999999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.23  E-value=0.48  Score=44.31  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|.++|..|+++|++|.+.+|++
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3899995  799999999999999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.95  E-value=0.52  Score=41.35  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ...|+|+|+| +|+.+++.+.+.|..|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            3689999976 68888878889999999999764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.83  E-value=0.51  Score=43.58  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =+||.||  |+|..+|..|+++|++|.+.+|+.
T Consensus         7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4788895  799999999999999999999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=0.57  Score=39.78  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      -+|||| |..|..+|-.|.+.|.+|++||..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            389999 5689999999999999999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.20  E-value=0.44  Score=44.73  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      =|+|.||  |+|.++|..|+++|++|++.+++.
T Consensus        20 ~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          20 VALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            5888884  799999999999999999999774

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.12  E-value=0.51  Score=43.99  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=27.0

Q ss_pred             EEEEc--c--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCG--G--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVG--G--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||.|  |  |+|.++|..|+++|++|++.+|+.
T Consensus         8 alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           8 GLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            78888  4  699999999999999999999874

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.59  E-value=0.49  Score=45.45  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~  143 (584)
                      +||-||  |+|.++|..||++|++|++.|+...
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            778884  7999999999999999999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.48  E-value=0.44  Score=42.33  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |.|||-| +|+.+|+.+| +|++|..+|-++
T Consensus         3 I~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            7899955 8999999887 499999999775

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.26  E-value=0.77  Score=39.85  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=28.6

Q ss_pred             CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      +-.|+|+| ||+|-+++..|.+.|. ++.|+.|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            45899999 7899999999999998 788988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.76  E-value=0.73  Score=40.35  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (584)
Q Consensus       112 DVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~  142 (584)
                      =|+|+| ||+|+.+...+...|. +|.++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            388999 6789998888888885 799999875

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.58  E-value=0.55  Score=43.86  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=24.9

Q ss_pred             EEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          114 IVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       114 VIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      ||-||  |+|.++|..|+++|++|++.++..
T Consensus         6 lITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            55584  799999999999999999988764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=80.50  E-value=0.54  Score=42.73  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             hCCCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEccEEEEecCCC
Q 007945          217 SLGGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLIIDAMGNF  260 (584)
Q Consensus       217 ~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G--~~i~ArlVIdADG~~  260 (584)
                      +.|++++.+++|++|..++++++|.+.+ |  +++.||.||-|.|..
T Consensus       231 ~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         231 SLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            3488999999999999888877766643 3  479999999998753

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.23  E-value=0.58  Score=43.31  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      |+|.||  |+|.++|..|+++|++|++.+++.
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~   35 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARS   35 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            567784  799999999999999999987553

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.01  E-value=0.42  Score=44.47  Aligned_cols=30  Identities=30%  Similarity=0.124  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (584)
Q Consensus       113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~  142 (584)
                      +||-||  |+|..+|..|+++|++|++.+|..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~   34 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESF   34 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            688895  799999999999999999999864