Citrus Sinensis ID: 007949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
Protein Sequence
MPSNRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSEPIPVDGEDHQT
Secondary Structure (PSIPRED)
cccccccccHHcccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccEEEEEccEEEcccHHHHHcccHHHHHHcccccccccccEEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccHHcccccccccccccEEEEEccEEEEcHHHHHHcccHHHHHHcccccccccccccccccccccEEEccccHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHccccEcccccccccHHHHHHHccHHHHHHHHHHcccEEccccccccHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHcccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHcHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHccHHHHHHHHccHHHHHcccccccccccEEEEccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mpsnrqstidaeldeidldasdfsssvplkkvpngdvfeasragdvDRLRYILESgvnvnardQWDSVALYYACLAGHLDAARMLLESgaicsehtfdgdrchYAALNLKVRKLLKayearppplgplQAALRDTFLGCGANRQFLEEAEVVLGISgvtsngasnsdsfppdvvfyvqgrpiEAHRVILSARSVFFRRKFETDWRYRNEirfsreklsypalyGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKalrdvdnsqkrfilqgsalpeedrLPAALSRILQISLARsnmdhnidngicklsSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKdfyegkeglpgdilpcieehdlsKETFEKMIEYMYTdglkdidpdQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLltlpppsgdssfrttvpsapgaiinvdqgnllDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKdeksepipvdgedhqt
Flexible Loop (DISEMBL)
mpsnrqstidaeldeidldasdfsssvplkkvpngdvfeasragdvdrlRYILESgvnvnardqWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSngasnsdsfpPDVVFYVQGRPIEAHrvilsarsvffrrkfetdwryrneirfsreklsypALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKalrdvdnsQKRFILQgsalpeedrlpAALSRILQISLarsnmdhniDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYegkeglpgdilPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAaeldkrdesaLMFDKRLEMLMQVakdeksepipvdgedhqt
Low Complexity Region (SEG)
MPSNRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSEPIPVDGEDHQT
Disordered region (IsUnstruct)
************************************VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTS********FPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSAL*****LPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTL*****************GAIINVDQGNLLDDLREKWLE********************************************
Disordered Region (DISOPRED)
*****************************KKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVL***********NSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE**********FSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSR****************PCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSF***********INVDQGNLLDDLREKWLEAEAA**********MFDKRLEMLM********************
Disordered Region (DISEMBL)
*********DAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKD***************
Disordered Region (DISPRO)
*************DEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDS***T*********INVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKDE**************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSNRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSEPIPVDGEDHQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	583	2.2.26 [Sep-21-2011]
Q9SJ85	578	BTB/POZ domain-containing	yes	no	0.943	0.951	0.743	0.0
Q5XIU1	478	Ankyrin repeat and BTB/PO	yes	no	0.708	0.864	0.302	8e-45
Q99LJ2	478	Ankyrin repeat and BTB/PO	yes	no	0.708	0.864	0.304	1e-44
Q969K4	478	Ankyrin repeat and BTB/PO	yes	no	0.708	0.864	0.287	6e-42
Q10225	523	BTB/POZ domain-containing	yes	no	0.236	0.263	0.319	8e-15
P40560	513	Ankyrin repeat-containing	yes	no	0.692	0.787	0.231	9e-14
Q717B3	365	TD and POZ domain-contain	no	no	0.255	0.408	0.277	1e-07
Q6YCH1	340	TD and POZ domain-contain	no	no	0.262	0.45	0.277	1e-07
Q717B4	365	TD and POZ domain-contain	no	no	0.255	0.408	0.290	5e-07
Q5NVK7	374	Speckle-type POZ protein	no	no	0.368	0.574	0.220	1e-06

>sp|Q9SJ85|Y2474_ARATH BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/558 (74%), Positives = 481/558 (86%), Gaps = 8/558 (1%)

Query: 23  FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAA 82
           +  SVPLKKVPNGD+FEASRAGDVDRLRY++E+GVNVNARD+WDSVALYYACLAGH+D+A
Sbjct: 26  YKPSVPLKKVPNGDIFEASRAGDVDRLRYLVETGVNVNARDRWDSVALYYACLAGHIDSA 85

Query: 83  RMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN 142
           R+LLE+GAICSEHTFDGDRCHYA+LNL++RKLLKA+EARPPPL PLQA+LRDTFLGC  N
Sbjct: 86  RLLLENGAICSEHTFDGDRCHYASLNLRIRKLLKAFEARPPPLAPLQASLRDTFLGCCHN 145

Query: 143 RQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET 202
           R +L++ E  L +S   S   S S+ FPPDV+FYVQGRPIEAHRVILSARS FF++KFE 
Sbjct: 146 RDYLQQEEANLDVSDTLSEFGS-SNYFPPDVMFYVQGRPIEAHRVILSARSPFFKQKFEN 204

Query: 203 DWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEK 262
           +W+ R E+RFS+EKLSYPAL  LIHFFYSDRLEI+VDDMEDLV+ICKVCKCESLQ+IIEK
Sbjct: 205 EWKDRREVRFSKEKLSYPALCSLIHFFYSDRLEISVDDMEDLVRICKVCKCESLQKIIEK 264

Query: 263 ELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNG 322
           ELIHQ+YAEYK  RD+DNS KRFILQG +LPEEDRLPA+L RIL++SLA+S +   ID  
Sbjct: 265 ELIHQRYAEYKTHRDLDNSMKRFILQGISLPEEDRLPASLHRILRVSLAKSFVGDVID-- 322

Query: 323 ICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGK 382
                SSV    + D V+ LADVCVRVDK+ F CHQV+LASRSEYF+ARLSR+ DF+EGK
Sbjct: 323 -----SSVGDTRVGDSVESLADVCVRVDKRNFYCHQVILASRSEYFRARLSRVNDFHEGK 377

Query: 383 EGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAV 442
            GLPGD LP +EEHDLS E FEKMIEYMYTDGLK+I+P+QAEE+FD ASRYLLFPLKRAV
Sbjct: 378 NGLPGDTLPFLEEHDLSAEAFEKMIEYMYTDGLKEINPNQAEEIFDVASRYLLFPLKRAV 437

Query: 443 ADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLP 502
           AD LL HLE  +PAELC WL+LSDMYGV K+REYCL+++ACNFE F ++ EFRAMLLTLP
Sbjct: 438 ADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVETHEFRAMLLTLP 497

Query: 503 PPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEML 562
           PPSGDSS RTTVPSAPGA++  DQGNLLDDLREKWLEAEA ELD RDESAL+FDKRL ML
Sbjct: 498 PPSGDSSLRTTVPSAPGAMMTTDQGNLLDDLREKWLEAEALELDMRDESALIFDKRLAML 557

Query: 563 MQVAKDEKSEPIPVDGED 580
           +++A+ EKSE    D +D
Sbjct: 558 VEIAEREKSESEAEDYKD 575

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIU1|ABTB1_RAT Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Rattus norvegicus GN=Abtb1 PE=2 SV=1

 Score =  182 bits (461), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 221/463 (47%), Gaps = 50/463 (10%)

Query: 34  NGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAIC 92
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +  R LL +GA C
Sbjct: 3   TSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARC 62

Query: 93  SEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVV 152
             +TFDG+RC Y AL+  +R+ L+ Y+        + A+ R         R + ++    
Sbjct: 63  EANTFDGERCLYGALSDPIRRALRDYKQ-------VTASCR--------RRDYYDDFLQR 107

Query: 153 LGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRF 212
           L   G+ S           DVVF V G+P  AHR IL ARS +F    +T W+ ++ +  
Sbjct: 108 LLEQGIHS-----------DVVFVVHGKPFRAHRCILGARSTYFANMLDTKWKGKSVVVL 156

Query: 213 SREKLSYPALYG-LIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAE 271
            R  L  P  +G L+ + Y+ RL+I V+ + D  ++ K C+   L   +E +   +K +E
Sbjct: 157 -RHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLDDLEAKC--EKVSE 213

Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVE 331
           + A +     +   +L     P + RL A ++      LA   +   +   + +L     
Sbjct: 214 FVASKPGTCVK---VLTIEPPPADPRLRADMAL-----LADCALPPELRGDLGELP---- 261

Query: 332 AMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILP 391
                D      D+C RV    F CH+     RS+YF+A L     F E +E +     P
Sbjct: 262 -FPCPDGFSSCPDICFRVADSSFLCHKAFFCGRSDYFRALLD--DHFRESEEPVASGDPP 318

Query: 392 CIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLE 451
            +  HD+S + F  ++ Y+Y+D   ++ P+ A ++   A  YLL  LKR     L   LE
Sbjct: 319 VVTLHDISPDIFTHVLYYVYSDH-TELPPELAYDVLSVADMYLLPGLKRLCGRSLAQLLE 377

Query: 452 MVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREF 494
             S   +  W I + ++ + ++ + C E +A   E   +  +F
Sbjct: 378 EDSVVGV--WRI-AKLFRLARLEDQCTEYMAKVIEKLVEREDF 417

May act as a mediator of the PTEN growth-suppressive signaling pathway. May play a role in developmental processes.

Rattus norvegicus (taxid: 10116)

>sp|Q99LJ2|ABTB1_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Mus musculus GN=Abtb1 PE=2 SV=1

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 220/463 (47%), Gaps = 50/463 (10%)

Query: 34  NGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAIC 92
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +  R LL +GA C
Sbjct: 3   TSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARC 62

Query: 93  SEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVV 152
             +TFDG+RC Y AL+  +R+ L+ Y+        + A+ R         R + ++    
Sbjct: 63  EANTFDGERCLYGALSDPIRRALRDYKQ-------VTASCR--------RRDYYDDFLQR 107

Query: 153 LGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRF 212
           L   G+ S           DVVF V G+P  AHR IL ARS +F    +T W+ ++ +  
Sbjct: 108 LLEQGIHS-----------DVVFVVHGKPFRAHRCILGARSTYFANMLDTKWKGKSVVVL 156

Query: 213 SREKLSYPALYG-LIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAE 271
            R  L  P  +G L+ + Y+ RL+I V+ + D  ++ K C+   L   +E +   +K +E
Sbjct: 157 -RHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLDDLEAKC--EKVSE 213

Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVE 331
           + A +     +   +L     P + RL A ++      LA   +   +   + +L     
Sbjct: 214 FVASKPGTCVK---VLTIEPPPADPRLRADMAL-----LADCALPSELRGDLGELP---- 261

Query: 332 AMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILP 391
                D      D+C RV    F CH+     RS+YF+A L     F E +E       P
Sbjct: 262 -FPCPDGFSSCPDICFRVADSSFLCHKAFFCGRSDYFRALLD--DHFQESEEPAASGDPP 318

Query: 392 CIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLE 451
            +  HD+S + F  ++ Y+Y+D   ++ P+ A ++   A  YLL  LKR     L   LE
Sbjct: 319 VVTLHDISPDIFIHVLYYVYSDH-TELPPELAYDVLSVADMYLLPGLKRLCGRSLAQLLE 377

Query: 452 MVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREF 494
             S   +  W I + M+ + ++ + C E +A   E   +  +F
Sbjct: 378 EDSVVGV--WRI-AKMFRLARLEDQCTEYMAKVIEKLVEREDF 417

May act as a mediator of the PTEN growth-suppressive signaling pathway. May play a role in developmental processes.

Mus musculus (taxid: 10090)

>sp|Q969K4|ABTB1_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Homo sapiens GN=ABTB1 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 217/463 (46%), Gaps = 50/463 (10%)

Query: 34  NGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAIC 92
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +    LL +GA C
Sbjct: 3   TSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARC 62

Query: 93  SEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVV 152
             +TFDG+RC Y AL+  +R+ L+ Y+        + A+ R         R + ++    
Sbjct: 63  EANTFDGERCLYGALSDPIRRALRDYKQ-------VTASCR--------RRDYYDDFLQR 107

Query: 153 LGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRF 212
           L   G+ S           DVVF V G+P   HR +L ARS +F    +T W+ ++ +  
Sbjct: 108 LLEQGIHS-----------DVVFVVHGKPFRVHRCVLGARSAYFANMLDTKWKGKSVVVL 156

Query: 213 SREKLSYPALYG-LIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAE 271
            R  L  P  +G L+ + Y+ RL+I V+ + D  ++ K C+   L   +E +   +K +E
Sbjct: 157 -RHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLSDLEAKC--EKVSE 213

Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVE 331
           + A +     +   +L     P + RL   ++      LA   +   +   + +L     
Sbjct: 214 FVASKPGTCVK---VLTIEPPPADPRLREDMAL-----LADCALPPELRGDLWELP---- 261

Query: 332 AMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILP 391
                D  +   D+C RV    F CH+     RS+YF+A L     F E +E       P
Sbjct: 262 -FPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLD--DHFRESEEPATSGGPP 318

Query: 392 CIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLE 451
            +  H +S + F  ++ YMY+D   ++ P+ A ++   A  YLL  LKR     L   L+
Sbjct: 319 AVTLHGISPDVFTHVLYYMYSDH-TELSPEAAYDVLSVADMYLLPGLKRLCGRSLAQMLD 377

Query: 452 MVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREF 494
             +   +  W + + ++ + ++ + C E +A   E   +  +F
Sbjct: 378 EDTVVGV--WRV-AKLFRLARLEDQCTEYMAKVIEKLVEREDF 417

May act as a mediator of the PTEN growth-suppressive signaling pathway. May play a role in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q10225|BTB3_SCHPO BTB/POZ domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=btb3 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 25/163 (15%)

Query: 39  EASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           EA R GD++ ++ ++E+    +N  DQ+D   L  A L GH    + LLE+GA+C   TF
Sbjct: 58  EACRRGDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTF 117

Query: 98  DGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISG 157
            G+RC Y ALN  +R++L +Y+                       +   E       I+ 
Sbjct: 118 QGERCLYGALNDNIRRMLLSYD---------------------ITKAIDESQPYASHITS 156

Query: 158 VTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKF 200
           + SN A +   F  D+VF  Q   + AH+  L+ARS +F+ KF
Sbjct: 157 LLSNSALH---FTTDIVFAGQYGRVFAHKFYLAARSSYFKSKF 196

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40560|YIA1_YEAST Ankyrin repeat-containing protein YIL001W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL001W PE=1 SV=1

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 199/483 (41%), Gaps = 79/483 (16%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           + R GD+D +  ++ +GVNVN+ D++D+  L+ A L GH    ++LL+ GA+C    ++G
Sbjct: 16  SCRTGDMDNVDRLISTGVNVNSVDKFDNSPLFLASLCGHEAVVKLLLQRGAVCDRDRYEG 75

Query: 100 DRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVT 159
            RC Y                     G L   +RDT L    ++      +V    +   
Sbjct: 76  ARCIY---------------------GALTDTIRDTLLSYDISKA----VDVKQPFATHI 110

Query: 160 SNGASNSDSFPPDVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLS 218
           S+  ++      D+ F V  G+   AH+ +L ARS     K   +W  ++EI     +  
Sbjct: 111 SSMYNDEGFLKRDITFRVSNGKLFTAHKFLLCARSEILAEKMVNEWA-KHEIVSLEVR-- 167

Query: 219 YPALYGL-IHFFYSDRL--EIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKAL 275
            P ++ + + F Y   +  +I     E+L+++      E L   ++K             
Sbjct: 168 -PDIFDIFLKFLYLIPILHQIEPGQYEELIELSSKFDIELLPEFLDKA------------ 214

Query: 276 RDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHI 335
                       + +A P E     +  +     +ARS +   ++N  C   S+V+  + 
Sbjct: 215 ------------RHTADPTEKSRLMSDYQYKFTEVARSQLLIFVNN--CIFRSTVDLANS 260

Query: 336 SDHVDDLA------DVCVRVDK-----KIFRCHQVVLASRSEYFKARLS---RMKDFYEG 381
              V  L       DV + V       +I+ CH  VL SR+EYFK   +   + K  Y  
Sbjct: 261 ERRVFSLMNCPAYPDVQLMVKNRNGAIRIYPCHLAVL-SRAEYFKVMFTNNFKEKVTYIK 319

Query: 382 KEGLPG---DILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPL 438
            + + G    I+P +   +   E  E ++ Y+Y D   DI    A ++   A   L   L
Sbjct: 320 AKHVTGKYNSIIPQLTLPNCEFEVAEIILRYLYADN-TDIPWMYAVDVLLLADILLEDRL 378

Query: 439 KRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNF-ETFADSREFRAM 497
           K   + ++    E +    +   L LS   GV ++ ++  + IA +  E + D    RA+
Sbjct: 379 KTIASTIITQSKEFIQQYNVFDVLYLSWEIGVERLEQFAAKFIAIHLQELYKDPEIKRAI 438

Query: 498 LLT 500
           +L+
Sbjct: 439 MLS 441

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q717B3|TDPZ1_MOUSE TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D C+ V    FR H+ +LA+RS  F+A        +E KE L       I+ H+L+ +
Sbjct: 187 FTDCCLLVAGHEFRAHKAILAARSPVFRAMFE-----HEMKESLKTP----IKIHNLNPQ 237

Query: 402 TFEKMIEYMYTDGLKDIDP-DQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCH 460
            F++M+ ++YT     +     A ++  AA +Y L  LK    D L  +L + +     H
Sbjct: 238 VFKEMMGFIYTGKAPHLHSHSMACDVLPAADKYGLVSLKVLCEDALCRNLSVKNAT---H 294

Query: 461 WLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLP 502
            LIL+D++   K++   L+ IA       ++ E+++M+ + P
Sbjct: 295 TLILADLHSTEKLKTQALDFIAYYASEVCETSEWKSMVESHP 336

Mus musculus (taxid: 10090)

>sp|Q6YCH1|TDPZ5_MOUSE TD and POZ domain-containing protein 5 OS=Mus musculus GN=Tdpoz5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D C+ V    FR H+ +LA+RS  F+A         E + G P +I      HDL  +
Sbjct: 187 FTDCCLLVAGHEFRAHKAILAARSPVFRAMFEHE---MEERLGNPTEI------HDLDPK 237

Query: 402 TFEKMIEYMYTDGLKDIDP-DQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCH 460
            F++M+ ++YT     +     A ++  AA +Y L  LK    D L  +L + + A+   
Sbjct: 238 VFKEMMGFIYTGKAPHLQSHSMATDVLTAADKYGLEGLKVLCEDALCRNLSVENAAQT-- 295

Query: 461 WLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSG 506
            LIL+D++   +++   L  IA +    +++ E+++M+ T P   G
Sbjct: 296 -LILADLHKREQLKTQALYFIALHASVVSETSEWKSMMETHPHLVG 340

Mus musculus (taxid: 10090)

>sp|Q717B4|TDPZ3_MOUSE TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D C+ V    F+ H+ +LA+RS  F+A         E KE L       IE  DL  +
Sbjct: 187 FTDCCLLVAGHEFKAHKAILAARSPVFRAMFEN-----EMKESLKNP----IEIMDLDLD 237

Query: 402 TFEKMIEYMYTDGLKDIDP-DQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCH 460
            F++M+ ++YT     +     A ++  AA +Y L  LK    DVL  +L + + A   H
Sbjct: 238 VFKEMMGFIYTGKAPHLHSHSMACDVLPAADKYGLVGLKVLCEDVLCRNLSVKTAA---H 294

Query: 461 WLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLP 502
            LIL+D+    K++   L+ IA +    +++ E+++M  + P
Sbjct: 295 TLILADLNSTEKLKSQALDFIAIHACEVSETSEWKSMWKSHP 336

Mus musculus (taxid: 10090)

>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 117/240 (48%), Gaps = 25/240 (10%)

Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPA--ALSRILQISLARSNMDHNIDNGI------ 323
           Y+ ++  D   K+FI +   L E + L     L+   ++S+ + +++ +  N +      
Sbjct: 123 YRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVP 182

Query: 324 -CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGK 382
            C+L+  +  +  +       D C+ V  + F+ H+ +LA+RS  F A      +  E K
Sbjct: 183 ECRLADELGGLWENSR---FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESK 237

Query: 383 EGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAV 442
           +         +E +D+  E F++M+ ++YT    ++D   A+++  AA +Y L  LK   
Sbjct: 238 KNR-------VEINDVEPEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMC 289

Query: 443 ADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLP 502
            D L  +L + + AE+   LIL+D++   +++   ++ I  +     ++  +++M+++ P
Sbjct: 290 EDALCSNLSVENAAEI---LILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHP 346

Inhibits IPF1/PDX1 transactivation of established target promoters, such as insulin, may be by recruiting a repressor complex. In complex with CUL3, involved in ubiquitination of BMI1, H2AFY and DAXX, and probably also in ubiquitination and proteasomal degradation of Gli2 or Gli3.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
255583036	587	protein binding protein, putative [Ricin	0.977	0.971	0.809	0.0
225446991	575	PREDICTED: BTB/POZ domain-containing pro	0.977	0.991	0.813	0.0
224131766	587	predicted protein [Populus trichocarpa]	0.993	0.986	0.794	0.0
449441674	577	PREDICTED: BTB/POZ domain-containing pro	0.981	0.991	0.770	0.0
42568941	578	ankyrin repeat-containing protein [Arabi	0.943	0.951	0.743	0.0
356577448	606	PREDICTED: BTB/POZ domain-containing pro	0.960	0.924	0.742	0.0
297831554	581	ankyrin repeat family protein [Arabidops	0.943	0.946	0.734	0.0
357118056	587	PREDICTED: BTB/POZ domain-containing pro	0.939	0.933	0.636	0.0
413944399	580	hypothetical protein ZEAMMB73_515710 [Ze	0.938	0.943	0.644	0.0
147823113	453	hypothetical protein VITISV_004049 [Viti	0.711	0.916	0.814	0.0

>gi|255583036|ref|XP_002532286.1| protein binding protein, putative [Ricinus communis] gi|223528020|gb|EEF30101.1| protein binding protein, putative [Ricinus communis]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/573 (80%), Positives = 517/573 (90%), Gaps = 3/573 (0%)

Query: 8   TIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDS 67
           T++ ELD IDLD SDF+SS+PLKKVPNGDVFEASRAGDVDRL Y+LESGVNVNARDQWDS
Sbjct: 10  TLEEELDGIDLDPSDFTSSLPLKKVPNGDVFEASRAGDVDRLTYLLESGVNVNARDQWDS 69

Query: 68  VALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGP 127
           VALYYACLAGHLDAARMLLE+GAICSEHTFDGDRCHYAALNLKVRKLLKA+EARPPPL P
Sbjct: 70  VALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLAP 129

Query: 128 LQAALRDTFLGCGANRQFLEEAEV--VLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAH 185
           LQAALRD FLGC +NR FLE+AE      + G++SNG SNS+ FPPDV F+VQGRPIEAH
Sbjct: 130 LQAALRDIFLGCFSNRAFLEQAEFGGFHHVPGLSSNGVSNSNHFPPDVAFFVQGRPIEAH 189

Query: 186 RVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLV 245
           RVILSARS FF+ KFETDWR R+E+RF +EKLSYPALY L+HFFYSDRLEI VDDMEDLV
Sbjct: 190 RVILSARSSFFKTKFETDWRDRHEVRFGKEKLSYPALYSLMHFFYSDRLEIIVDDMEDLV 249

Query: 246 KICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRI 305
           +ICKVCKCESL+RI+EKEL HQKYAEYKALRDVDNSQKR+ILQG++LPEEDRLP+AL R+
Sbjct: 250 RICKVCKCESLKRILEKELYHQKYAEYKALRDVDNSQKRYILQGASLPEEDRLPSALHRV 309

Query: 306 LQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRS 365
           LQ SLA+S ++ N+D  + +L  S +A+ +SD VDDLADVC+RVDKKIFRCHQV+LASRS
Sbjct: 310 LQTSLAKSTLEQNLDVSVDRLVYSFDAVQLSDSVDDLADVCIRVDKKIFRCHQVILASRS 369

Query: 366 EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEE 425
           EYF+ARLSRMKDF+EGK+GLP D LPC+ EHDLS ET EKM+EYMYTD LK+I PDQAEE
Sbjct: 370 EYFRARLSRMKDFHEGKDGLPIDSLPCLVEHDLSMETLEKMLEYMYTDSLKEIYPDQAEE 429

Query: 426 MFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNF 485
           MFDAASRYLLFPLKRAVAD LL HLEMVSPAELCHWLIL+DMYGV K+REYCL++IAC+F
Sbjct: 430 MFDAASRYLLFPLKRAVADALLPHLEMVSPAELCHWLILADMYGVLKIREYCLDIIACDF 489

Query: 486 ETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAEL 545
           ETFAD+ EFRAMLLTLPPPSGDSS RTT PSAPGAIIN DQGNLLDDLREKWLEAEAAEL
Sbjct: 490 ETFADTLEFRAMLLTLPPPSGDSSLRTTAPSAPGAIINTDQGNLLDDLREKWLEAEAAEL 549

Query: 546 DKRDESALMFDKRLEMLMQVAKDEKSEPIPVDG 578
           DKRDESAL+FDKRLEMLM VA+ EKS+  P DG
Sbjct: 550 DKRDESALLFDKRLEMLMLVAEKEKSDE-PTDG 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446991|ref|XP_002268472.1| PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Vitis vinifera]

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/573 (81%), Positives = 511/573 (89%), Gaps = 3/573 (0%)

Query: 1   MPSNRQS-TIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNV 59
           M + R S TID +LD IDL+  DF++S+P+KKVP GDVFEASRAGDVDRLRY+LESGVNV
Sbjct: 1   MSTPRPSWTIDPDLDTIDLEPEDFAASLPIKKVPAGDVFEASRAGDVDRLRYLLESGVNV 60

Query: 60  NARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 119
           NARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKA+E
Sbjct: 61  NARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFE 120

Query: 120 ARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGIS-GVTSNGASNSDSFPPDVVFYVQ 178
           ARPPPLGPLQ ALR+TFLGC ANR + EE E     S G++SNG  N D FPPDV FYVQ
Sbjct: 121 ARPPPLGPLQGALRETFLGCAANRIYSEELEGQFQNSAGLSSNGGLNRDHFPPDVAFYVQ 180

Query: 179 GRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAV 238
           GRPIEAHR+ILSARS FF+RKFE+DW+ R E+RFSREKLSYPALY LIHFFYSDRL+IAV
Sbjct: 181 GRPIEAHRIILSARSPFFKRKFESDWKDRTEVRFSREKLSYPALYSLIHFFYSDRLDIAV 240

Query: 239 DDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRL 298
           DDMEDLV+ICKVCKC++LQR++EKELIHQKYAEYKALRDVDNSQKRFILQG +LPEEDRL
Sbjct: 241 DDMEDLVRICKVCKCDALQRVLEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRL 300

Query: 299 PAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQ 358
           PAAL RILQISLA+SN +HN++NG+ KL S V AM +    DDLADVC++VDKK+FRCHQ
Sbjct: 301 PAALHRILQISLAKSNQEHNLENGVSKLVSCVGAMKMGGS-DDLADVCIKVDKKVFRCHQ 359

Query: 359 VVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDI 418
           VVLA+RSEYFKARLSRMKDF EG  GLP   LPC+EEHDLS E FEKMIEYMYTDGLKD+
Sbjct: 360 VVLAARSEYFKARLSRMKDFLEGINGLPNYTLPCLEEHDLSMEAFEKMIEYMYTDGLKDM 419

Query: 419 DPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCL 478
           DPDQAEE+FDAASRYLLFPLKRAVAD L+ HLE V PAELCHWLILSDMYGV K+REYCL
Sbjct: 420 DPDQAEELFDAASRYLLFPLKRAVADALMPHLETVPPAELCHWLILSDMYGVLKIREYCL 479

Query: 479 EVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWL 538
           +VIACNFETFAD+ EFRAMLLTLPPPSGDSS RTTVPSAPGA +N DQGNLLDDLREKWL
Sbjct: 480 DVIACNFETFADTPEFRAMLLTLPPPSGDSSLRTTVPSAPGAGMNTDQGNLLDDLREKWL 539

Query: 539 EAEAAELDKRDESALMFDKRLEMLMQVAKDEKS 571
           EAEAAELDKRDESAL FDKRLEML+ VA+ E S
Sbjct: 540 EAEAAELDKRDESALQFDKRLEMLVVVAEQENS 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131766|ref|XP_002321173.1| predicted protein [Populus trichocarpa] gi|222861946|gb|EEE99488.1| predicted protein [Populus trichocarpa]

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/585 (79%), Positives = 522/585 (89%), Gaps = 6/585 (1%)

Query: 1   MPSNRQST---IDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV 57
           MP NR S+   ID++LDEIDLD SDF+SS+PLKKVPNGDVF+ASRAGDV+RL+Y+LESGV
Sbjct: 1   MPPNRPSSGWIIDSDLDEIDLDPSDFTSSLPLKKVPNGDVFQASRAGDVERLKYLLESGV 60

Query: 58  NVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKA 117
           NVNARD+WDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKA
Sbjct: 61  NVNARDKWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKA 120

Query: 118 YEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVL-GISGVTSNGASNSDSFPPDVVFY 176
           +EARPPPL PLQAALRDTFL C ANR +LE++E +     G++S+G SN++ FPPDVVF+
Sbjct: 121 FEARPPPLAPLQAALRDTFLSCEANRVYLEQSEAIYRVSVGLSSSGVSNANHFPPDVVFF 180

Query: 177 VQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEI 236
           VQGRPIEAHRVILSARS FF+RKF+TDWR R+E+R +REKLSYPALY L+HFFYSDRLEI
Sbjct: 181 VQGRPIEAHRVILSARSPFFKRKFKTDWRGRSEVRLAREKLSYPALYSLVHFFYSDRLEI 240

Query: 237 AVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEED 296
           AVDDMEDLV+ICKVCKCESLQR++EKELIHQKYAEYKALRD+DNSQKR+ILQG +LPEED
Sbjct: 241 AVDDMEDLVRICKVCKCESLQRVLEKELIHQKYAEYKALRDLDNSQKRYILQGLSLPEED 300

Query: 297 RLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRC 356
           RL AAL R+LQ SLARS M  N++N + +L SS   + ++D VDDLAD+CVRVD KIFRC
Sbjct: 301 RLSAALHRVLQSSLARSTMQQNLENDVDRLVSSFNVVQMNDCVDDLADICVRVDNKIFRC 360

Query: 357 HQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK 416
           HQVVLASRSEYF+ARLS MKDF+EGK GLP   +PC EEHDLS E FEKM+EYMYTDGLK
Sbjct: 361 HQVVLASRSEYFRARLSHMKDFHEGKVGLPSGAVPCFEEHDLSMEAFEKMVEYMYTDGLK 420

Query: 417 DIDP-DQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVRE 475
           DI+P  QAEEMFDAASRYLLFPLKRAVADVLL  LEMVSPAELCHWLILSDMYGV K+RE
Sbjct: 421 DINPGQQAEEMFDAASRYLLFPLKRAVADVLLPQLEMVSPAELCHWLILSDMYGVIKIRE 480

Query: 476 YCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLRE 535
           YCL+ IACNFETFAD+R+FRAMLLT+PPPSGDSS RTT PSAPGA +N DQGNLLDDLRE
Sbjct: 481 YCLDTIACNFETFADTRDFRAMLLTVPPPSGDSSLRTTAPSAPGAALNTDQGNLLDDLRE 540

Query: 536 KWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSEPIPVDGED 580
           KWLEAEAA+LDKRDESAL+FDKRLEMLM VAK E SE +  D +D
Sbjct: 541 KWLEAEAADLDKRDESALLFDKRLEMLMLVAKKE-SETVVDDIQD 584

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441674|ref|XP_004138607.1| PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cucumis sativus]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/580 (77%), Positives = 497/580 (85%), Gaps = 8/580 (1%)

Query: 1   MPSNRQSTIDAELDE----IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG 56
           MP  R +  + +LD     IDLD SDF SS+PLKKVPNGD+F ASRAGDVDRLRY+LESG
Sbjct: 1   MPPRRNNPWNFDLDPDLYGIDLDPSDFGSSLPLKKVPNGDIFSASRAGDVDRLRYLLESG 60

Query: 57  VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLK 116
           VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLK
Sbjct: 61  VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLK 120

Query: 117 AYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGIS-GVTSNGASNSDSFPPDVVF 175
           A+EARPPPLGPLQAALR+TFLGCGANR +LE+ E    +S G+     SN + FP DV F
Sbjct: 121 AFEARPPPLGPLQAALRETFLGCGANRAYLEQVESFHHLSAGLPFKSDSNYEFFPSDVSF 180

Query: 176 YVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLE 235
            VQGRPIEAHRVILSARS FF+RKF+ DW+ R E+RFS+EKLSY ALY L+HFFYSDRLE
Sbjct: 181 IVQGRPIEAHRVILSARSPFFKRKFQVDWKDRKEVRFSKEKLSYSALYSLLHFFYSDRLE 240

Query: 236 IAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEE 295
           +AVDDMEDL++ICKVCKCESL RI+EKEL+HQKYA+YKAL +VDNS KRFILQG +LPEE
Sbjct: 241 VAVDDMEDLIRICKVCKCESLLRILEKELVHQKYAQYKALGNVDNSVKRFILQGVSLPEE 300

Query: 296 DRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFR 355
           DRLPAAL R+LQI+LA S  +    N +   +S ++   I+DH+DDLAD+CVRVDKK FR
Sbjct: 301 DRLPAALRRMLQITLANSTRELGDANDLHLFASKLQ---INDHMDDLADICVRVDKKFFR 357

Query: 356 CHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGL 415
           CH+VVLASRSEYFKAR+SR+KDF EGK  +    LP +EEHDLSKE FEKMIEYMYTD L
Sbjct: 358 CHKVVLASRSEYFKARISRIKDFGEGKNEIAVHTLPFLEEHDLSKEAFEKMIEYMYTDCL 417

Query: 416 KDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVRE 475
           KDIDPDQAEEMFDAASRYLLFPLKRAVAD LL  LEMV PAELC WLILSDMYGV K+RE
Sbjct: 418 KDIDPDQAEEMFDAASRYLLFPLKRAVADALLPQLEMVPPAELCQWLILSDMYGVIKIRE 477

Query: 476 YCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLRE 535
           YCL+ IACNFETFAD+REFR MLLTLPPPSGDSS RTTVPSAPGA +N DQGNLLDDLRE
Sbjct: 478 YCLDTIACNFETFADTREFREMLLTLPPPSGDSSLRTTVPSAPGAAVNTDQGNLLDDLRE 537

Query: 536 KWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSEPIP 575
           KWLEAEAAELDKRDESAL+FDKRLEMLM +A+ EKS+  P
Sbjct: 538 KWLEAEAAELDKRDESALLFDKRLEMLMIIAEQEKSDENP 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568941|ref|NP_178551.2| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|334351259|sp|Q9SJ85.2|Y2474_ARATH RecName: Full=BTB/POZ domain-containing protein At2g04740 gi|330250765|gb|AEC05859.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/558 (74%), Positives = 481/558 (86%), Gaps = 8/558 (1%)

Query: 23  FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAA 82
           +  SVPLKKVPNGD+FEASRAGDVDRLRY++E+GVNVNARD+WDSVALYYACLAGH+D+A
Sbjct: 26  YKPSVPLKKVPNGDIFEASRAGDVDRLRYLVETGVNVNARDRWDSVALYYACLAGHIDSA 85

Query: 83  RMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN 142
           R+LLE+GAICSEHTFDGDRCHYA+LNL++RKLLKA+EARPPPL PLQA+LRDTFLGC  N
Sbjct: 86  RLLLENGAICSEHTFDGDRCHYASLNLRIRKLLKAFEARPPPLAPLQASLRDTFLGCCHN 145

Query: 143 RQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET 202
           R +L++ E  L +S   S   S S+ FPPDV+FYVQGRPIEAHRVILSARS FF++KFE 
Sbjct: 146 RDYLQQEEANLDVSDTLSEFGS-SNYFPPDVMFYVQGRPIEAHRVILSARSPFFKQKFEN 204

Query: 203 DWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEK 262
           +W+ R E+RFS+EKLSYPAL  LIHFFYSDRLEI+VDDMEDLV+ICKVCKCESLQ+IIEK
Sbjct: 205 EWKDRREVRFSKEKLSYPALCSLIHFFYSDRLEISVDDMEDLVRICKVCKCESLQKIIEK 264

Query: 263 ELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNG 322
           ELIHQ+YAEYK  RD+DNS KRFILQG +LPEEDRLPA+L RIL++SLA+S +   ID  
Sbjct: 265 ELIHQRYAEYKTHRDLDNSMKRFILQGISLPEEDRLPASLHRILRVSLAKSFVGDVID-- 322

Query: 323 ICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGK 382
                SSV    + D V+ LADVCVRVDK+ F CHQV+LASRSEYF+ARLSR+ DF+EGK
Sbjct: 323 -----SSVGDTRVGDSVESLADVCVRVDKRNFYCHQVILASRSEYFRARLSRVNDFHEGK 377

Query: 383 EGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAV 442
            GLPGD LP +EEHDLS E FEKMIEYMYTDGLK+I+P+QAEE+FD ASRYLLFPLKRAV
Sbjct: 378 NGLPGDTLPFLEEHDLSAEAFEKMIEYMYTDGLKEINPNQAEEIFDVASRYLLFPLKRAV 437

Query: 443 ADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLP 502
           AD LL HLE  +PAELC WL+LSDMYGV K+REYCL+++ACNFE F ++ EFRAMLLTLP
Sbjct: 438 ADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVETHEFRAMLLTLP 497

Query: 503 PPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEML 562
           PPSGDSS RTTVPSAPGA++  DQGNLLDDLREKWLEAEA ELD RDESAL+FDKRL ML
Sbjct: 498 PPSGDSSLRTTVPSAPGAMMTTDQGNLLDDLREKWLEAEALELDMRDESALIFDKRLAML 557

Query: 563 MQVAKDEKSEPIPVDGED 580
           +++A+ EKSE    D +D
Sbjct: 558 VEIAEREKSESEAEDYKD 575

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577448|ref|XP_003556837.1| PREDICTED: BTB/POZ domain-containing protein At2g04740-like, partial [Glycine max]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/564 (74%), Positives = 478/564 (84%), Gaps = 4/564 (0%)

Query: 8   TIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDS 67
           T+  ELD +DL     SS VP+KKVP GDVFEASRAGDV+RLRY+LE+GVNVNARDQWDS
Sbjct: 23  TLVDELDALDLG----SSVVPVKKVPYGDVFEASRAGDVERLRYLLEAGVNVNARDQWDS 78

Query: 68  VALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGP 127
           VALYYACLAGHLDAAR LLE+GAICSE+TFDGDRCHYAALNL VR+LLKA+EARPPPL P
Sbjct: 79  VALYYACLAGHLDAARTLLENGAICSENTFDGDRCHYAALNLSVRRLLKAFEARPPPLDP 138

Query: 128 LQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRV 187
           LQA+LRDTFLGC      +    ++L    +  N   NS  FPPDV F VQG+PI AHRV
Sbjct: 139 LQASLRDTFLGCMYRFFPISFHSILLYRLMLGLNIIINSSHFPPDVAFIVQGKPIRAHRV 198

Query: 188 ILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247
           ILS+RS FF++KF TDW+ R+E+RFSRE+LSYPALY LIHFFYSDRLE+AVDDM+DL++I
Sbjct: 199 ILSSRSPFFKKKFTTDWKERSEVRFSRERLSYPALYSLIHFFYSDRLEVAVDDMQDLIRI 258

Query: 248 CKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQ 307
           CKVC+CESL +++EKELIHQKYA+YKAL DVDNSQKR+ILQG +LP+EDRLPAAL RIL 
Sbjct: 259 CKVCRCESLHKVLEKELIHQKYADYKALGDVDNSQKRYILQGLSLPQEDRLPAALHRILL 318

Query: 308 ISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEY 367
            +L+ S      ++ I KL + + AM ++  +DDLADVCVRVD+KIFRCHQV+LASRSEY
Sbjct: 319 TALSNSTRQSGQEDEIDKLVTRMGAMQMAKSLDDLADVCVRVDRKIFRCHQVILASRSEY 378

Query: 368 FKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMF 427
           FKARLS MKDF+E  + L  DILPC+EEHDLS E FEKMIEYMYTD L+DI+PDQAEEM 
Sbjct: 379 FKARLSHMKDFHEDIDELSVDILPCLEEHDLSMEAFEKMIEYMYTDRLQDINPDQAEEML 438

Query: 428 DAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFET 487
           D ASRYLLFPLKRAVADVLL HLEMVSP ELCHWLIL+DMYGV K+REYCL+ IACNFET
Sbjct: 439 DVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADMYGVCKIREYCLDTIACNFET 498

Query: 488 FADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDK 547
           FAD++EFRAMLLTLPPPSGDSS RTTVP  PG+ +N DQGNLLDDLREKWLE EAAELDK
Sbjct: 499 FADTKEFRAMLLTLPPPSGDSSLRTTVPRIPGSALNADQGNLLDDLREKWLEIEAAELDK 558

Query: 548 RDESALMFDKRLEMLMQVAKDEKS 571
           RDESAL FDKRLEMLM VA+ EKS
Sbjct: 559 RDESALQFDKRLEMLMLVAEQEKS 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831554|ref|XP_002883659.1| ankyrin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329499|gb|EFH59918.1| ankyrin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/562 (73%), Positives = 482/562 (85%), Gaps = 12/562 (2%)

Query: 23  FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAA 82
           +  SVPLKKVPNGD+FEASRAGDVDRLRY+LE+GVNVNARD+WDSVALYYACLAGH+D+A
Sbjct: 26  YKPSVPLKKVPNGDIFEASRAGDVDRLRYLLETGVNVNARDRWDSVALYYACLAGHIDSA 85

Query: 83  RMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN 142
           R+LLE+GAICSEHTFDGDRCHYA+LNL++RKLLKA+EARPPPLGPLQA+LR+TFLGC  N
Sbjct: 86  RLLLENGAICSEHTFDGDRCHYASLNLRIRKLLKAFEARPPPLGPLQASLRETFLGCCHN 145

Query: 143 RQFLEEAEVVLGISGVTSNGA--SNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKF 200
           R +L++         V+ N +   +S+ FPPDV+F+VQGRPIEAHRVILSARS FF++KF
Sbjct: 146 RDYLKQEAFDATNLDVSDNPSEFGSSNYFPPDVMFFVQGRPIEAHRVILSARSPFFKQKF 205

Query: 201 ETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRII 260
           E +W+ R E+RFS+EKLSYPAL  LIHFFYSDRLEI+VDDMEDLV+ICKVCKCESLQ+II
Sbjct: 206 ENEWKDRREVRFSKEKLSYPALCSLIHFFYSDRLEISVDDMEDLVRICKVCKCESLQKII 265

Query: 261 EKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNID 320
           EKELIHQKYAEYK  RD+DNS KRFILQG +LPEEDRLPA+L RIL++SLA+S +   ID
Sbjct: 266 EKELIHQKYAEYKTHRDLDNSMKRFILQGISLPEEDRLPASLHRILRVSLAKSFLGDVID 325

Query: 321 NGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYE 380
                  SSV    + D VD LADVCVRVDK+ F CHQV+LASRSEYF+ARLSR+ DF+E
Sbjct: 326 -------SSVGDRRVGDSVDSLADVCVRVDKRNFYCHQVILASRSEYFRARLSRVNDFHE 378

Query: 381 GKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKR 440
           GK GL GD LP +EEHDLS E FEKMIEYMYTDGLK+I+P QAEE+FD +SRYLLFPLKR
Sbjct: 379 GKNGLLGDTLPYLEEHDLSAEAFEKMIEYMYTDGLKEINPSQAEEIFDVSSRYLLFPLKR 438

Query: 441 AVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLT 500
           AVAD LL HLE  +PAELC WL+LSDMYGV K+REYCL+++ACNFE F ++REFRAMLLT
Sbjct: 439 AVADALLPHLESATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVETREFRAMLLT 498

Query: 501 LPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLE 560
           LPPPSGDSS RTTVPSAPGA++  DQGNLLDDLREKWLEAEA ELD RDESAL+FDKRL 
Sbjct: 499 LPPPSGDSSLRTTVPSAPGAMMTTDQGNLLDDLREKWLEAEALELDMRDESALIFDKRLA 558

Query: 561 MLMQVAKDEKSEPIPVDGEDHQ 582
           ML+++A+ EKSE    + ED++
Sbjct: 559 MLVEIAEREKSES---EAEDYK 577

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357118056|ref|XP_003560775.1| PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Brachypodium distachyon]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/575 (63%), Positives = 447/575 (77%), Gaps = 27/575 (4%)

Query: 15  EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYAC 74
           +I+LD  D   SVPLKKVP GD+FEA+RAGD DRL  +LE G NVNARD+WDSVALYYAC
Sbjct: 4   DINLDPEDLQPSVPLKKVPTGDLFEAARAGDCDRLALLLEGGANVNARDRWDSVALYYAC 63

Query: 75  LAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRD 134
           LAGH DAARMLLE+GA+C+E TFDGDRCHYAAL L +R+LLK++EARPPPL PL AALR 
Sbjct: 64  LAGHADAARMLLEAGAVCAERTFDGDRCHYAALTLDLRRLLKSFEARPPPLAPLPAALRT 123

Query: 135 TFLGCGANRQ-FLE---------EAEVVLGISGVT-SNGASNSDSFPPDVVFYVQGRPIE 183
           TFL C ANR  FLE         EA  +   +G   ++ AS +  FPPD+ FYV G+PIE
Sbjct: 124 TFLACPANRTTFLEILQGSSSGSEAAALAQTAGFGLTDDASTASLFPPDITFYVDGKPIE 183

Query: 184 AHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMED 243
           AHR+IL ARS FF +KF+TDW+ R E+RFS +KLS+ ALY LIHFFYSDRLE +VDDME 
Sbjct: 184 AHRLILCARSCFFEKKFKTDWKNRREVRFSNQKLSFGALYNLIHFFYSDRLEASVDDMEC 243

Query: 244 LVKICKVCKCESLQRIIEKELIHQKYAEYKAL--RDVDNSQKRFILQGSALPEEDRLPAA 301
           L++  KVC CE L +++ KE++H ++A YK+    +++NSQKRF+L G +LP ED+LP+A
Sbjct: 244 LLRTSKVCACEGLHKLVHKEVMHHRFAPYKSTMESELENSQKRFVLHGQSLPLEDQLPSA 303

Query: 302 LSRILQISLARS---NMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQ 358
           L RIL+  LA S   +  +N  N +C+        ++ D  DDLAD+ V+VD ++FRCHQ
Sbjct: 304 LQRILEKCLANSREKDYFNNEPNEMCR--------NLKD--DDLADLIVKVDDRVFRCHQ 353

Query: 359 VVLASRSEYFKARLSRMKDFYEGKEGLPGDI-LPCIEEHDLSKETFEKMIEYMYTDGLKD 417
           ++LASRSEYFKARLSR  DF EG  G    + LP ++EHDLS E FEKM+EYMYTD L+ 
Sbjct: 354 LILASRSEYFKARLSRTVDFLEGYNGQQESLDLPFLQEHDLSTEAFEKMLEYMYTDKLEH 413

Query: 418 IDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYC 477
           +DP QAEE+FD ASRYLLFPLKRAVAD+LL +LE VSPAELCHWL+LSD+YGV K+REYC
Sbjct: 414 MDPIQAEELFDIASRYLLFPLKRAVADLLLPNLEHVSPAELCHWLMLSDIYGVVKIREYC 473

Query: 478 LEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKW 537
           L++IACNFE FAD+REFRA+LLTLPPPS D + RTT PS PGA  N DQGN+LDDLREKW
Sbjct: 474 LDIIACNFEMFADTREFRALLLTLPPPSADDALRTTRPSEPGAAGNTDQGNVLDDLREKW 533

Query: 538 LEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSE 572
           LEAEAAELDKRD+SA +FDKRLEMLM VA+ E ++
Sbjct: 534 LEAEAAELDKRDQSAALFDKRLEMLMHVAEREAND 568

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944399|gb|AFW77048.1| hypothetical protein ZEAMMB73_515710 [Zea mays]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/568 (64%), Positives = 439/568 (77%), Gaps = 21/568 (3%)

Query: 15  EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYAC 74
           +++LD  D   SVPLKKVP GD+FEA+RAGD DRL  +L++G NVNARD+WDSVALYYAC
Sbjct: 15  DVELDPEDLQPSVPLKKVPGGDLFEAARAGDCDRLALLLDAGANVNARDRWDSVALYYAC 74

Query: 75  LAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRD 134
           LAGH +AARMLLE+GA+C+E TFDGDRCHYAALNL++R LLK++EARPPPL PL  ALR 
Sbjct: 75  LAGHAEAARMLLEAGAVCAERTFDGDRCHYAALNLRLRWLLKSFEARPPPLAPLPTALRA 134

Query: 135 TFLGCGANRQ-FLEEAEVVLGISGVT---------SNGASNSDSFPPDVVFYVQGRPIEA 184
           TFL C ANR  FLE  +   G               +  S++  FPPD+ FYV  +P+EA
Sbjct: 135 TFLACPANRTAFLEMLQGSAGAESAALAAAAGFGPKDDPSSACLFPPDITFYVDRKPVEA 194

Query: 185 HRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDL 244
           HRVIL ARS FF +KF+TDW+ R E+RFS +KL + ALY LIHFFYSDRLE+AVDDME+L
Sbjct: 195 HRVILCARSPFFEKKFKTDWKDRKEVRFSNQKLYFGALYSLIHFFYSDRLEVAVDDMENL 254

Query: 245 VKICKVCKCESLQRIIEKELIHQKYAEYKALR--DVDNSQKRFILQGSALPEEDRLPAAL 302
            + CKVCKCE LQ++++KE++HQKYAEYK+ R  D+D+SQKRFILQ  +LPEEDRLP+AL
Sbjct: 255 ARACKVCKCEELQKVLDKEVVHQKYAEYKSARELDMDSSQKRFILQAQSLPEEDRLPSAL 314

Query: 303 SRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLA 362
            RILQ  LA S        G C   S+    +  D  DDLAD+ ++V  K+F CHQV+LA
Sbjct: 315 QRILQTCLANSR------EGYCSEESNEMIRNSED--DDLADLYIKVGDKVFHCHQVILA 366

Query: 363 SRSEYFKARLSRMKDFYEGKEGL-PGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD 421
           SRSEYF+ARLSR  DF EG  G      +P +EEHD+S E FEKM+EYMYTD L+ +DP 
Sbjct: 367 SRSEYFRARLSRTVDFLEGNCGFEAAQNVPLLEEHDISAEAFEKMLEYMYTDKLEHLDPG 426

Query: 422 QAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVI 481
           QAEE+FD ASRYLLFPLKR VAD+LL +LE VSPAELCHWL++SD+YGV K+REY L++I
Sbjct: 427 QAEELFDVASRYLLFPLKRVVADMLLPYLEHVSPAELCHWLMMSDIYGVMKIREYILDII 486

Query: 482 ACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAE 541
           ACNFE FA +REFRA+LLTLPPPSGD S RTT PSAPG   N DQGN+LDDLREKWLEAE
Sbjct: 487 ACNFEMFAATREFRALLLTLPPPSGDDSLRTTRPSAPGTGGNTDQGNILDDLREKWLEAE 546

Query: 542 AAELDKRDESALMFDKRLEMLMQVAKDE 569
            AELD+RDESA +FDKRLEMLM VA+ E
Sbjct: 547 GAELDERDESAALFDKRLEMLMLVAEKE 574

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823113|emb|CAN73021.1| hypothetical protein VITISV_004049 [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/416 (81%), Positives = 374/416 (89%), Gaps = 1/416 (0%)

Query: 156 SGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE 215
           +G++SNG  N D FPPDV FYVQGRPIEAHR+ILSARS FF+RKFE+DW+ R E+RFSRE
Sbjct: 36  NGLSSNGGLNRDHFPPDVAFYVQGRPIEAHRIILSARSPFFKRKFESDWKDRTEVRFSRE 95

Query: 216 KLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKAL 275
           KLSYPALY LIHFFYSDRL+IAVDDMEDLV+ICKVCKC++LQR++EKELIHQKYAEYKAL
Sbjct: 96  KLSYPALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCDALQRVLEKELIHQKYAEYKAL 155

Query: 276 RDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHI 335
           RDVDNSQKRFILQG +LPEEDRLPAAL RILQISLA+SN +HN++NG+ KL S V AM +
Sbjct: 156 RDVDNSQKRFILQGLSLPEEDRLPAALHRILQISLAKSNQEHNLENGVSKLVSCVGAMKM 215

Query: 336 SDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE 395
               DDLADVC++VDKK+FRCHQVVLA+RSEYFKARLSRMKDF EG  GLP   LPC+EE
Sbjct: 216 GGS-DDLADVCIKVDKKVFRCHQVVLAARSEYFKARLSRMKDFLEGINGLPNYTLPCLEE 274

Query: 396 HDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSP 455
           HDLS E FEKMIEYMYTDGLKD+DPDQAEE+FDAASRYLLFPLKRAVAD L+ HLE V P
Sbjct: 275 HDLSMEAFEKMIEYMYTDGLKDMDPDQAEELFDAASRYLLFPLKRAVADALMPHLETVPP 334

Query: 456 AELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVP 515
           AELCHWLILSDMYGV K+REYCL+VIACNFETFAD+ EFRAMLLTLPPPSGDSS RTTVP
Sbjct: 335 AELCHWLILSDMYGVLKIREYCLDVIACNFETFADTPEFRAMLLTLPPPSGDSSLRTTVP 394

Query: 516 SAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKS 571
           SAPGA +N DQGNLLDDLREKWLEAEAAELDKRDESAL FDKRLEML+ VA+ E S
Sbjct: 395 SAPGAGMNTDQGNLLDDLREKWLEAEAAELDKRDESALQFDKRLEMLVVVAEQENS 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
TAIR|locus:2049168	578	AT2G04740 [Arabidopsis thalian	0.969	0.977	0.734	2.8e-231
UNIPROTKB|Q969K4	478	ABTB1 "Ankyrin repeat and BTB/	0.144	0.175	0.517	1e-40
UNIPROTKB|A4FV83	470	ABTB1 "ABTB1 protein" [Bos tau	0.142	0.176	0.511	1.1e-38
UNIPROTKB|F1N9Z2	477	ABTB1 "Uncharacterized protein	0.144	0.176	0.541	1.6e-34
MGI|MGI:1933148	478	Abtb1 "ankyrin repeat and BTB	0.144	0.175	0.529	1.9e-33
RGD|1359363	478	Abtb1 "ankyrin repeat and BTB	0.144	0.175	0.529	2.4e-33
UNIPROTKB|I3LER2	478	ABTB1 "Uncharacterized protein	0.144	0.175	0.505	8.4e-33
UNIPROTKB|E2QTQ1	478	ABTB1 "Uncharacterized protein	0.144	0.175	0.517	9.7e-33
UNIPROTKB|G4NKT9	644	MGG_03027 "BTB/POZ domain-cont	0.159	0.144	0.436	3.3e-15
UNIPROTKB|Q2KF72	794	MGCH7_ch7g814 "Putative unchar	0.159	0.117	0.436	6.4e-15

TAIR|locus:2049168 AT2G04740 [Arabidopsis thaliana (taxid:3702)]

 Score = 2231 (790.4 bits), Expect = 2.8e-231, P = 2.8e-231
 Identities = 421/573 (73%), Positives = 494/573 (86%)

Query:     8 TIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDS 67
             T++++L+++DLD  D+  SVPLKKVPNGD+FEASRAGDVDRLRY++E+GVNVNARD+WDS
Sbjct:    11 TLESDLEDLDLDLQDYKPSVPLKKVPNGDIFEASRAGDVDRLRYLVETGVNVNARDRWDS 70

Query:    68 VALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGP 127
             VALYYACLAGH+D+AR+LLE+GAICSEHTFDGDRCHYA+LNL++RKLLKA+EARPPPL P
Sbjct:    71 VALYYACLAGHIDSARLLLENGAICSEHTFDGDRCHYASLNLRIRKLLKAFEARPPPLAP 130

Query:   128 LQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRV 187
             LQA+LRDTFLGC  NR +L++ E  L +S   S   S S+ FPPDV+FYVQGRPIEAHRV
Sbjct:   131 LQASLRDTFLGCCHNRDYLQQEEANLDVSDTLSEFGS-SNYFPPDVMFYVQGRPIEAHRV 189

Query:   188 ILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247
             ILSARS FF++KFE +W+ R E+RFS+EKLSYPAL  LIHFFYSDRLEI+VDDMEDLV+I
Sbjct:   190 ILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFYSDRLEISVDDMEDLVRI 249

Query:   248 CKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQ 307
             CKVCKCESLQ+IIEKELIHQ+YAEYK  RD+DNS KRFILQG +LPEEDRLPA+L RIL+
Sbjct:   250 CKVCKCESLQKIIEKELIHQRYAEYKTHRDLDNSMKRFILQGISLPEEDRLPASLHRILR 309

Query:   308 ISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEY 367
             +SLA+S +   ID       SSV    + D V+ LADVCVRVDK+ F CHQV+LASRSEY
Sbjct:   310 VSLAKSFVGDVID-------SSVGDTRVGDSVESLADVCVRVDKRNFYCHQVILASRSEY 362

Query:   368 FKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMF 427
             F+ARLSR+ DF+EGK GLPGD LP +EEHDLS E FEKMIEYMYTDGLK+I+P+QAEE+F
Sbjct:   363 FRARLSRVNDFHEGKNGLPGDTLPFLEEHDLSAEAFEKMIEYMYTDGLKEINPNQAEEIF 422

Query:   428 DAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFET 487
             D ASRYLLFPLKRAVAD LL HLE  +PAELC WL+LSDMYGV K+REYCL+++ACNFE 
Sbjct:   423 DVASRYLLFPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEA 482

Query:   488 FADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDK 547
             F ++ EFRAMLLTLPPPSGDSS RTTVPSAPGA++  DQGNLLDDLREKWLEAEA ELD 
Sbjct:   483 FVETHEFRAMLLTLPPPSGDSSLRTTVPSAPGAMMTTDQGNLLDDLREKWLEAEALELDM 542

Query:   548 RDESALMFDKRLEMLMQVAKDEKSEPIPVDGED 580
             RDESAL+FDKRL ML+++A+ EKSE    D +D
Sbjct:   543 RDESALIFDKRLAMLVEIAEREKSESEAEDYKD 575

GO:0005737 "cytoplasm" evidence=ISM

GO:0009954 "proximal/distal pattern formation" evidence=RCA

GO:0010227 "floral organ abscission" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q969K4 ABTB1 "Ankyrin repeat and BTB/POZ domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
 Identities = 44/85 (51%), Positives = 58/85 (68%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +    LL +GA C  
Sbjct:     5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    65 NTFDGERCLYGALSDPIRRALRDYK 89

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|A4FV83 ABTB1 "ABTB1 protein" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
 Identities = 43/84 (51%), Positives = 55/84 (65%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +    LL  GA C  
Sbjct:     5 DLFSSCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLAHGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAY 118
             +TFDG+RC Y A +  +R+ L+ Y
Sbjct:    65 NTFDGERCLYGAQSDAIRRALRDY 88

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1N9Z2 ABTB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + + GDV R+RY+LE   V +N RD+WDS  LYYACL GH D  R LL +GA C  
Sbjct:     5 DLFTSCKKGDVSRVRYLLEQRDVEINVRDKWDSTPLYYACLCGHEDLVRYLLANGAKCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y AL+  +R+LLK Y+
Sbjct:    65 NTFDGERCLYGALSDAIRRLLKEYK 89

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1933148 Abtb1 "ankyrin repeat and BTB (POZ) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 239 (89.2 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +  R LL +GA C  
Sbjct:     5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    65 NTFDGERCLYGALSDPIRRALRDYK 89

GO:0003674 "molecular_function" evidence=ND

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1359363 Abtb1 "ankyrin repeat and BTB (POZ) domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 239 (89.2 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +  R LL +GA C  
Sbjct:     5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    65 NTFDGERCLYGALSDPIRRALRDYK 89

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

UNIPROTKB|I3LER2 ABTB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 8.4e-33, Sum P(2) = 8.4e-33
 Identities = 43/85 (50%), Positives = 57/85 (67%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +    LL +GA C  
Sbjct:     5 DLFSSCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y A +  +R+ L+ Y+
Sbjct:    65 NTFDGERCLYGAQSDAIRRALREYK 89

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2QTQ1 ABTB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 232 (86.7 bits), Expect = 9.7e-33, Sum P(2) = 9.7e-33
 Identities = 44/85 (51%), Positives = 58/85 (68%)

Query:    36 DVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
             D+F + R GDV R+RY+LE   V VN RD+WDS  LYYACL GH +    LL +GA C  
Sbjct:     5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARCEA 64

Query:    95 HTFDGDRCHYAALNLKVRKLLKAYE 119
             +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    65 NTFDGERCLYGALSDPIRRALRDYK 89

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|G4NKT9 MGG_03027 "BTB/POZ domain-containing protein 3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 202 (76.2 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH 95
             +  EA R GD+ R + ++ +GVN+N +D +D   L  A   GH D  R+LLE+GA+   +
Sbjct:    44 EFLEACRRGDLARCQELMSAGVNINGKDAFDYTPLIVASGCGHFDLVRLLLEAGAVAERN 103

Query:    96 TFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQ 129
             TF G+RC Y ALN K+RKLL  Y+     + PLQ
Sbjct:   104 TFSGERCIYNALNDKIRKLLIQYDYSKS-IDPLQ 136

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2KF72 MGCH7_ch7g814 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 202 (76.2 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH 95
             +  EA R GD+ R + ++ +GVN+N +D +D   L  A   GH D  R+LLE+GA+   +
Sbjct:    44 EFLEACRRGDLARCQELMSAGVNINGKDAFDYTPLIVASGCGHFDLVRLLLEAGAVAERN 103

Query:    96 TFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQ 129
             TF G+RC Y ALN K+RKLL  Y+     + PLQ
Sbjct:   104 TFSGERCIYNALNDKIRKLLIQYDYSKS-IDPLQ 136

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ85	Y2474_ARATH	No assigned EC number	0.7437	0.9433	0.9515	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025867001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (548 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	583
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-13
pfam00651	101	pfam00651, BTB, BTB/POZ domain	1e-13
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-12
pfam00651	101	pfam00651, BTB, BTB/POZ domain	2e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-04
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.004

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF 403
           DV + V  K F  H+ VLA+ S YFKA  S   DF E  +         I   D+S E F
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFS--SDFKESDK-------SEIYLDDVSPEDF 51

Query: 404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL 450
             ++ ++YT  L D+  +  EE+ + A    +  L     + LL  L
Sbjct: 52  RALLNFLYTGKL-DLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
            +L DV + V  K F  H+ VLA+ S YFKA  +             G+    I   D+S
Sbjct: 8   GELCDVTLVVGDKEFHAHKAVLAACSPYFKALFT-------------GNKEVEITLEDVS 54

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLL 447
            E FE ++E++YT  L +I  +  +++   A +  +  L     + L+
Sbjct: 55  PEDFEALLEFIYTGKL-EITEENVDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 22/96 (22%), Positives = 52/96 (54%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V G+   AH+ +L+A S +F+  F +D++  ++     + +S      L++F Y+
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60

Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQ 267
            +L++  +++E+L+++    +   L  + E+ L+  
Sbjct: 61  GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKL 96

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V  +   AH+ +L+A S +F+  F  +      +      +S      L+ F Y+
Sbjct: 12  DVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVEITLED----VSPEDFEALLEFIYT 67

Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEKELI 265
            +LEI  ++++DL+ +    +  +L    E+ LI
Sbjct: 68  GKLEITEENVDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G ++ ++ +LE G +VNARD+  +  L+ A   G+LD  ++LL+ GA  +    DG
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 100 DRC-HYAAL--NLKVRKLL 115
               H AA   +L+V KLL
Sbjct: 107 RTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G+++ ++ +LE G +VN  D     AL+ A   G+L+  ++LLE GA  +    DG
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 100 DRC-HYAALN 108
           +   H AA N
Sbjct: 62  NTALHLAARN 71

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 36/51 (70%)

Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          A+R G+++ ++ +LE G +VNA+D+  + AL+ A   G+L+  ++LLE GA
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 19/151 (12%)

Query: 345 VCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFE 404
           + +     I + H+++L+S SEYFK       +F E +  L  D            ++F 
Sbjct: 14  IIIVNGGGIIKVHKIILSSSSEYFKKMFK--NNFKENEINLNIDY-----------DSFN 60

Query: 405 KMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC-HWLI 463
           ++I+Y+YT  + +I  +  +++   A+  ++  L     + ++  ++       C     
Sbjct: 61  EVIKYIYTGKI-NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDD----NNCIDIYR 115

Query: 464 LSDMYGVFKVREYCLEVIACNFETFADSREF 494
            S  YG  K+       I  N E   +  +F
Sbjct: 116 FSFFYGCKKLYSAAYNYIRNNIELIYNDPDF 146

Length = 534

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 16/50 (32%), Positives = 34/50 (68%)

Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL 86
          + +A+ +G ++ ++Y+LE GV++N  D+  + AL+ A   G+L+  ++LL
Sbjct: 5  LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G ++ ++ +LE+G +VNA+D      L+ A   GHL+  ++LLE GA  +    DG
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 100 DRC-HYAALNLK---VRKLLKA 117
           +   H AA N     V+ LLK 
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 16  IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACL 75
            D++A D   + PL          A+R G++D ++ +L+ G +VNARD+     L+ A  
Sbjct: 64  ADVNARDKDGNTPL--------HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

Query: 76  AGHLDAARMLL 86
            GHL+  ++LL
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 18/105 (17%)

Query: 4   NRQSTIDAELDEID-----LDASDFSSSVPLKKVPNGDVF-------------EASRAGD 45
            R + I  E+  ID     L+A++   + P   +   +V              + + +GD
Sbjct: 35  ERMAAIQEEIARIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGD 94

Query: 46  VDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
               R +L  G + N RD      L+ AC  GH+   R+LLE GA
Sbjct: 95  AVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA 139

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 35  GDVF-EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           GD+   A++  D+  ++ +L+ G+NV++ D   + AL  A    H+D  R+L+ +GA
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 60  NARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALNLK---VRKLL 115
           NARD+     L+ A   GHL+  ++LLE+GA  +    DG    H AA N     V+ LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 116 KA 117
           + 
Sbjct: 61  EK 62

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 22/137 (16%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 163 ASNSDSFPPD-VVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPA 221
           +     F  + ++    G  I+ H++ILS+ S +F++ F+ +++  NEI  +   + Y +
Sbjct: 3   SFELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLN---IDYDS 58

Query: 222 LYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQ----------KYAE 271
              +I + Y+ ++ I  ++++D++ I      + L  +    +I            +++ 
Sbjct: 59  FNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSF 118

Query: 272 YKALRDVDNSQKRFILQ 288
           +   + + ++   +I  
Sbjct: 119 FYGCKKLYSAAYNYIRN 135

Length = 534

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 47  DRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA---ICSEHTFDGDRC- 102
           +R+ Y+L  GV +N +D +    L+YA    + +  + LL+ GA   + ++    GD   
Sbjct: 173 NRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK---YGDTPL 229

Query: 103 HYAALN 108
           H A LN
Sbjct: 230 HIAILN 235

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 57  VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR 101
           +++NA D   +  L+ A   G L+  + LL+ G   +    DG  
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLT 51

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 47  DRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           D ++ IL+ G++VN +D      L+YA   G L++ +ML E GA
Sbjct: 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA 148

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 38.7 bits (89), Expect = 0.004
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  GD D +  +LE+G + N+R+ +   AL  A   G ++  ++LL+ G   S   F+ 
Sbjct: 154 AALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Query: 100 DRCHYAALNLKVRKLLKA 117
           +    A ++ +    L +
Sbjct: 214 EGVANANVSKRNILNLTS 231

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	583
KOG0511	516	consensus Ankyrin repeat protein [General function	100.0
KOG0783	1267	consensus Uncharacterized conserved protein, conta	100.0
PHA02713	557	hypothetical protein; Provisional	99.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.95
PHA02790	480	Kelch-like protein; Provisional	99.95
PHA03098	534	kelch-like protein; Provisional	99.94
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.9
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.83
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.83
PHA03098	534	kelch-like protein; Provisional	99.82
PHA02790	480	Kelch-like protein; Provisional	99.81
PHA02713	557	hypothetical protein; Provisional	99.81
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.78
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.76
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.73
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.68
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.66
PHA02859	209	ankyrin repeat protein; Provisional	99.63
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.63
PHA02946	446	ankyin-like protein; Provisional	99.62
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.61
PHA02878	477	ankyrin repeat protein; Provisional	99.61
PHA02874	434	ankyrin repeat protein; Provisional	99.61
PHA02791	284	ankyrin-like protein; Provisional	99.61
PHA02741	169	hypothetical protein; Provisional	99.61
PHA02791	284	ankyrin-like protein; Provisional	99.6
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.6
PHA03100	480	ankyrin repeat protein; Provisional	99.58
KOG0508	615	consensus Ankyrin repeat protein [General function	99.58
PHA02878	477	ankyrin repeat protein; Provisional	99.57
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.57
PHA02875	413	ankyrin repeat protein; Provisional	99.56
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.56
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.56
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.55
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.55
PHA02743	166	Viral ankyrin protein; Provisional	99.55
PHA02859	209	ankyrin repeat protein; Provisional	99.54
PHA03095	471	ankyrin-like protein; Provisional	99.54
PHA02798	489	ankyrin-like protein; Provisional	99.53
PHA02874	434	ankyrin repeat protein; Provisional	99.53
PHA03095	471	ankyrin-like protein; Provisional	99.53
PHA03100	480	ankyrin repeat protein; Provisional	99.51
PHA02743	166	Viral ankyrin protein; Provisional	99.51
PHA02946	446	ankyin-like protein; Provisional	99.51
PHA02989	494	ankyrin repeat protein; Provisional	99.51
PHA02875	413	ankyrin repeat protein; Provisional	99.51
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.51
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.5
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.49
KOG2838	401	consensus Uncharacterized conserved protein, conta	99.49
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.49
PHA02798	489	ankyrin-like protein; Provisional	99.48
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.48
PHA02795	437	ankyrin-like protein; Provisional	99.47
PHA02917	661	ankyrin-like protein; Provisional	99.46
KOG0508	615	consensus Ankyrin repeat protein [General function	99.45
PHA02876	682	ankyrin repeat protein; Provisional	99.44
PHA02876	682	ankyrin repeat protein; Provisional	99.44
PHA02989	494	ankyrin repeat protein; Provisional	99.43
KOG0510	929	consensus Ankyrin repeat protein [General function	99.43
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.42
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.41
KOG0510	929	consensus Ankyrin repeat protein [General function	99.4
PHA02736	154	Viral ankyrin protein; Provisional	99.4
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.38
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.37
PHA02741	169	hypothetical protein; Provisional	99.37
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.36
PHA02917	661	ankyrin-like protein; Provisional	99.36
PHA02736	154	Viral ankyrin protein; Provisional	99.34
PHA02730	672	ankyrin-like protein; Provisional	99.34
KOG0514	452	consensus Ankyrin repeat protein [General function	99.33
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.33
PHA02795	437	ankyrin-like protein; Provisional	99.32
PHA02884	300	ankyrin repeat protein; Provisional	99.32
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.32
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.28
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.26
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.25
PHA02730	672	ankyrin-like protein; Provisional	99.23
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.21
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.2
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
KOG0514	452	consensus Ankyrin repeat protein [General function	99.16
PHA02792	631	ankyrin-like protein; Provisional	99.16
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.13
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.12
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.12
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.11
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.11
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.1
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.08
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.05
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.02
PHA02792	631	ankyrin-like protein; Provisional	99.02
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.01
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.01
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.99
KOG0511	516	consensus Ankyrin repeat protein [General function	98.99
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.93
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.86
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.85
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.83
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.83
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	98.81
KOG4682	488	consensus Uncharacterized conserved protein, conta	98.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.77
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.71
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.67
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.59
PF13606	30	Ank_3: Ankyrin repeat	98.53
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	98.38
KOG2384	223	consensus Major histocompatibility complex protein	98.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.32
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.26
PF13606	30	Ank_3: Ankyrin repeat	98.16
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.02
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.99
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.86
KOG2384	223	consensus Major histocompatibility complex protein	97.77
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.69
KOG0522	560	consensus Ankyrin repeat protein [General function	97.61
KOG0522	560	consensus Ankyrin repeat protein [General function	97.6
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.55
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.35
KOG2716	230	consensus Polymerase delta-interacting protein PDI	97.21
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.18
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	96.89
KOG3473	112	consensus RNA polymerase II transcription elongati	96.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.72
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.37
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	96.28
KOG2716	230	consensus Polymerase delta-interacting protein PDI	96.26
KOG2505	591	consensus Ankyrin repeat protein [General function	96.18
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	96.11
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	96.08
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	95.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	95.56
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	95.48
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.47
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	95.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	94.84
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	94.81
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	94.76
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	94.56
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.29
KOG2714	465	consensus SETA binding protein SB1 and related pro	94.14
KOG2505	591	consensus Ankyrin repeat protein [General function	94.11
KOG3473	112	consensus RNA polymerase II transcription elongati	93.57
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	93.34
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	92.9
KOG2714	465	consensus SETA binding protein SB1 and related pro	92.76
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	91.65
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	90.89
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	88.24
KOG1778	319	consensus CREB binding protein/P300 and related TA	87.68
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	85.74
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	85.57
KOG2715	210	consensus Uncharacterized conserved protein, conta	83.94

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.6e-43  Score=332.96  Aligned_cols=489  Identities=31%  Similarity=0.404  Sum_probs=371.1

Q ss_pred             ccchhhhcccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            6 QSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         6 ~~~~~~~~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .|+++.+++..+++..+.....|+.+..+..|++||+.|+.+.|++|++.|+++|+.|.+.++||.+|+..||.+++++|
T Consensus         9 ~~~~~~dl~dk~mD~~~~~~s~~~~~~~f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklL   88 (516)
T KOG0511|consen    9 SWTLESDLEDKDMDLQDYKPSVPLKKVPFGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLL   88 (516)
T ss_pred             chhhhcchhhhhcchhhcCcccccccCchHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchHHHHHhhHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhcccccccCCCCC
Q 007949           86 LESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASN  165 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~~~aa~~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~  165 (583)
                      +++||-+.....+|..+||+|.+..|.++|+++......                     =.++|...++++++.+..+-
T Consensus        89 LenGAiC~rdtf~G~RC~YgaLnd~IR~mllsydi~KA~---------------------d~~qP~aahi~s~l~dt~l~  147 (516)
T KOG0511|consen   89 LENGAICSRDTFDGDRCHYGALNDRIRRMLLSYDILKAF---------------------DARQPPAAHIQSSLRDTFLG  147 (516)
T ss_pred             HHcCCcccccccCcchhhhhhhhHHHHHHHHHHHHHHHh---------------------hccCCcchHHHHHhhccccc
Confidence            999999999999999999999999999999987653211                     12456667788777776552


Q ss_pred             CCCCCCcEEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHH
Q 007949          166 SDSFPPDVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDL  244 (583)
Q Consensus       166 ~~~~~~Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~l  244 (583)
                         +..|++|.+ +|..|.|||..|++||++|...+..-|..  ...|.-..+-+.+|..+++|+|-..-.+-++....+
T Consensus       148 ---~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~--~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynal  222 (516)
T KOG0511|consen  148 ---CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ--GHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNAL  222 (516)
T ss_pred             ---cccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc--cCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHH
Confidence               356999987 67888999999999999987766544421  233433467789999999999987544555666888


Q ss_pred             HHHHhHhchHHHHHHHHHH--HHHHHHHHHcCChhHHHHHHHH-HHhcCCCCccCchhHHHHHHHHHhhhcccCCCcccc
Q 007949          245 VKICKVCKCESLQRIIEKE--LIHQKYAEYKALRDVDNSQKRF-ILQGSALPEEDRLPAALSRILQISLARSNMDHNIDN  321 (583)
Q Consensus       245 l~~a~~~~~~~l~~~l~~~--l~~~~~a~~~~~~~l~~~~~~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  321 (583)
                      +++..+++.+.+...+...  -...+....+.|......-.++ +..+                  .+.        ++.
T Consensus       223 lsi~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~~~~~~Li~~~------------------~~~--------ykt  276 (516)
T KOG0511|consen  223 LSIEVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQKIIEKELIHQR------------------YAE--------YKT  276 (516)
T ss_pred             HhhhhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------hhh--------hcc
Confidence            8888888777776666521  1111122222221111111111 0000                  000        000


Q ss_pred             chhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHH
Q 007949          322 GICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE  401 (583)
Q Consensus       322 ~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~  401 (583)
                      +.+..-+-.   ..+.-.+.+  +.+..+ .++|||++++ .|++||+.||.+  +|.|+..   +...+...++.+...
T Consensus       277 ~~dl~Ns~~---~~fsl~~ay--iql~~~-~RyP~hla~i-~R~eyfk~mf~g--~f~e~s~---n~~~p~lslp~~~~~  344 (516)
T KOG0511|consen  277 HRDLDNSPM---KRFSLQGAY--IQLPEE-DRYPAHLARI-LRVEYFKSMFVG--DFIESSV---NDTRPGLSLPSLADV  344 (516)
T ss_pred             chhhccChh---heeeecccc--cccccc-ccccHHHHHH-HHHHHHHHHhcc--chhhhcC---CccccccccchHHHH
Confidence            000000000   000000111  333333 4599999998 889999999998  9999643   235677888989999


Q ss_pred             HHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCch--H-HHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHH
Q 007949          402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLF--P-LKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCL  478 (583)
Q Consensus       402 ~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~--~-l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~  478 (583)
                      +.+.+++|+|+++. ++.++-+.+++..|+++.+.  . |+......+.+....+..-+++.++.++...+...|...+.
T Consensus       345 vveI~lr~lY~d~t-di~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~  423 (516)
T KOG0511|consen  345 VVEIDLRNLYCDQT-DIIFDVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAE  423 (516)
T ss_pred             HHHHHHHHhhcccc-cchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999 89999999999999999775  2 67777777777665456678999999999999999999999


Q ss_pred             HHHHhhHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHHhHHHH
Q 007949          479 EVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKR  558 (583)
Q Consensus       479 ~~i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~  558 (583)
                      .|++.|+..+...|++....+.       +     .+..+ ..+|||++|+++++  ||+.....+.+-+|+++.++++|
T Consensus       424 ~~~a~hl~~l~~dPe~~~~~~~-------s-----~~ri~-~rqeTDtieLlDDi--Ry~l~~~~~~~~~D~~~~~~~d~  488 (516)
T KOG0511|consen  424 THEARHLLLLLPDPEGDSSLRT-------S-----VPRIP-ARQETDTIELLDDI--RYLLAEALELDMRDESALIFDDR  488 (516)
T ss_pred             HHHHHHHHHhcCCchhhHHHHh-------c-----cchhh-hhcccchhHHHHHH--HHHHHHHcCCCcchhHHhhhhhh
Confidence            9999999999999999877654       2     22223 45899999999874  59999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCC
Q 007949          559 LEMLMQVAKDEKSEPI  574 (583)
Q Consensus       559 ~~~~~~~~~~~~~~~~  574 (583)
                      +.|+.++||-+|++..
T Consensus       489 L~~l~~i~Ey~k~m~m  504 (516)
T KOG0511|consen  489 LAMLVEIAEYEKSMSM  504 (516)
T ss_pred             HHHHHHHHHHhhhhhH
Confidence            9999999999998753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=281.91  Aligned_cols=279  Identities=23%  Similarity=0.317  Sum_probs=193.1

Q ss_pred             CCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCC--Cc----------ccEEEcCCCCHHHHHHHhhhhcCCccc
Q 007949          168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRY--RN----------EIRFSREKLSYPALYGLIHFFYSDRLE  235 (583)
Q Consensus       168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e--~~----------~~~i~l~~v~~~~~~~lL~ylYtg~~~  235 (583)
                      ..++||+|.||+..|+|||.||++||++|+++|....+.  ..          .-.|.+++++|..|+.+|+||||+..-
T Consensus       556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~  635 (1267)
T KOG0783|consen  556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL  635 (1267)
T ss_pred             cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence            457899999999999999999999999999999754322  22          223447899999999999999999642


Q ss_pred             C--ChhhHHHHHHHHhHhchHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcc
Q 007949          236 I--AVDDMEDLVKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARS  313 (583)
Q Consensus       236 i--~~~~~~~ll~~a~~~~~~~l~~~l~~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (583)
                      -  ..|++.   ..+....-.-+.+.-..|-.....++.+++.+|......+..       ...+++++.+......   
T Consensus       636 ~P~heDdid---ci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~~~-------~~~~~n~ia~~~~N~l---  702 (1267)
T KOG0783|consen  636 SPWHEDDID---CIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSRQP-------LLSLTNDIAQLYNNFL---  702 (1267)
T ss_pred             CCccccchh---hhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhccc-------hhhcccHHHHHhcCee---
Confidence            2  233321   111000000011111134444455555555444433322221       1112222332221111   


Q ss_pred             cCCCccccchhhHHHHHHHhcccccCCCCCcEEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCe
Q 007949          314 NMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPC  392 (583)
Q Consensus       314 ~~~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~  392 (583)
                                           .+.+.++.-|+.+.. +|+.++||+++|++|.+||..||..  -|.|+..       ..
T Consensus       703 ---------------------~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~--~w~E~sS-------~t  752 (1267)
T KOG0783|consen  703 ---------------------VLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQF--VWMESSS-------IT  752 (1267)
T ss_pred             ---------------------EecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHH--HHhhhcc-------ce
Confidence                                 111123344666666 6778999999999999999999998  8988743       33


Q ss_pred             eecCCCCHHHHHHHhhhhcCC-CCC----CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHh
Q 007949          393 IEEHDLSKETFEKMIEYMYTD-GLK----DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDM  467 (583)
Q Consensus       393 i~l~~v~~~~~~~~l~~iYt~-~~~----~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~  467 (583)
                      +....+..+.++.+|+|+|+. +..    .-..+.+.+++..||.|.+.+|+..|+..|.+.+   +..+|-.++++|..
T Consensus       753 ~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl---~lk~~~~llefaam  829 (1267)
T KOG0783|consen  753 VNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKL---NLKTLPTLLEFAAM  829 (1267)
T ss_pred             eecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh---cccchHHHHHHHHH
Confidence            444455699999999999954 331    1123678999999999999999999999999988   89999999999999


Q ss_pred             cCcHHHHHHHHHHHHhhHHHhhCch
Q 007949          468 YGVFKVREYCLEVIACNFETFADSR  492 (583)
Q Consensus       468 ~~~~~L~~~c~~~i~~nf~~v~~~~  492 (583)
                      |+++.|+..|++||+.|+..++...
T Consensus       830 Y~ak~L~~~C~dfic~N~~~~Lear  854 (1267)
T KOG0783|consen  830 YHAKELYSRCIDFICHNIEFFLEAR  854 (1267)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhc
Confidence            9999999999999999998877543

>PHA02713 hypothetical protein; Provisional

Probab=99.96  E-value=7e-29  Score=268.45  Aligned_cols=210  Identities=14%  Similarity=0.184  Sum_probs=177.5

Q ss_pred             hHHHHHHHhcccccCCCCCcEEEEEC-CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHH
Q 007949          325 KLSSSVEAMHISDHVDDLADVCVRVD-KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF  403 (583)
Q Consensus       325 ~l~~~l~~l~~l~~~~~~~Dv~~~~~-~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~  403 (583)
                      ....+++.|+.++.++.+|||++.++ |+.|+|||.+||++|+||++||.+  +|.|+.      ....|.+.++++++|
T Consensus         8 h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~--~~~e~~------~~~~v~l~~v~~~~~   79 (557)
T PHA02713          8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT--PMIIRD------LVTRVNLQMFDKDAV   79 (557)
T ss_pred             hhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC--Cchhhc------cCceEEeccCCHHHH
Confidence            34567788888999999999999997 899999999999999999999998  676642      235799999999999


Q ss_pred             HHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 007949          404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIAC  483 (583)
Q Consensus       404 ~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~  483 (583)
                      +.+|+|+||+.   ++.++++++|.+|++|+++.|++.|++||.+++   +++||+.++.+|..+++..|.+.|.+||++
T Consensus        80 ~~ll~y~Yt~~---i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l---~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~  153 (557)
T PHA02713         80 KNIVQYLYNRH---ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT---NHDTCIYMYHRLYEMSHIPIVKYIKRMLMS  153 (557)
T ss_pred             HHHHHHhcCCC---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC---CccchHHHHHHHHhccchHHHHHHHHHHHH
Confidence            99999999996   578999999999999999999999999999999   799999999999999999999999999999


Q ss_pred             hHHHhhCchhHHHHHhcCCCCCCCccccc-cCCC-CCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHHhHHHHHHH
Q 007949          484 NFETFADSREFRAMLLTLPPPSGDSSFRT-TVPS-APGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEM  561 (583)
Q Consensus       484 nf~~v~~~~~f~~l~~~~~~~~~~~~~~~-~~~~-~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~  561 (583)
                      ||..+.++++|.+|+.+       .+..+ ++++ +.+.+|    .+++ +++++|++++....    .....+++.+|+
T Consensus       154 ~f~~v~~~~ef~~L~~~-------~l~~lL~~d~~l~v~~E----e~v~-eav~~W~~~d~~~r----~~~~~ll~~VR~  217 (557)
T PHA02713        154 NIPTLITTDAFKKTVFE-------ILFDIISTNDNVYLYRE----GYKV-TILLKWLEYNYITE----EQLLCILSCIDI  217 (557)
T ss_pred             HHHHHhCChhhhhCCHH-------HHHHHhccccccCCCcH----HHHH-HHHHHHHhcCHHHH----HHHhhhHhhhhH
Confidence            99999999999988766       33333 3345 456667    4666 99999999997542    224456666665


Q ss_pred             HHH
Q 007949          562 LMQ  564 (583)
Q Consensus       562 ~~~  564 (583)
                      +..
T Consensus       218 ~~l  220 (557)
T PHA02713        218 QNL  220 (557)
T ss_pred             hhc
Confidence            543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.95  E-value=9.9e-28  Score=258.28  Aligned_cols=214  Identities=21%  Similarity=0.275  Sum_probs=186.9

Q ss_pred             cchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCH
Q 007949          321 NGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSK  400 (583)
Q Consensus       321 l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~  400 (583)
                      .........++.|+.++..+.+|||++.++++.|+|||.+||++|+||++||.+  ++.|+       ....|.+.++++
T Consensus        15 ~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~--~l~e~-------~~~~i~l~~v~~   85 (571)
T KOG4441|consen   15 TDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTS--GLKES-------KQKEINLEGVDP   85 (571)
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcC--Ccccc-------cceEEEEecCCH
Confidence            445666778888999999999999999999999999999999999999999998  55554       567999999999


Q ss_pred             HHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 007949          401 ETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEV  480 (583)
Q Consensus       401 ~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~  480 (583)
                      .+++.+++|+||+.+ .++.+++++|+.+|++||++.+.+.|++||.+++   +++||+.+..+|+.|++.+|.+.+..|
T Consensus        86 ~~l~~ll~y~Yt~~i-~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l---~~~Nclgi~~~a~~~~~~~L~~~a~~~  161 (571)
T KOG4441|consen   86 ETLELLLDYAYTGKL-EISEDNVQELLEAASLLQIPEVVDACCEFLESQL---DPSNCLGIRRFAELHSCTELLEVADEY  161 (571)
T ss_pred             HHHHHHHHHhhcceE-EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            999999999999999 8999999999999999999999999999999999   799999999999999999999999999


Q ss_pred             HHhhHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHHhHHHHHH
Q 007949          481 IACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLE  560 (583)
Q Consensus       481 i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~  560 (583)
                      |.+||.++..+++|.+|+.+    .+..+  +.++++.+..|    .+++ +++++|++++...   |-.++..+++.+|
T Consensus       162 i~~~F~~v~~~eefl~L~~~----~l~~l--l~~d~l~v~~E----~~vf-~a~~~Wv~~d~~~---R~~~~~~ll~~vr  227 (571)
T KOG4441|consen  162 ILQHFAEVSKTEEFLLLSLE----ELIGL--LSSDDLNVDSE----EEVF-EAAMRWVKHDFEE---REEHLPALLEAVR  227 (571)
T ss_pred             HHHHHHHHhccHHhhCCCHH----HHHhh--ccccCCCcCCH----HHHH-HHHHHHHhcCHhh---HHHHHHHHHHhcC
Confidence            99999999999999987665    22222  24555666666    3455 9999999999876   4456666777777


Q ss_pred             H
Q 007949          561 M  561 (583)
Q Consensus       561 ~  561 (583)
                      +
T Consensus       228 ~  228 (571)
T KOG4441|consen  228 L  228 (571)
T ss_pred             c
Confidence            4

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=255.52  Aligned_cols=178  Identities=14%  Similarity=0.206  Sum_probs=155.2

Q ss_pred             cccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeec--CCCCHHHHHHHhhhhcCC
Q 007949          336 SDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE--HDLSKETFEKMIEYMYTD  413 (583)
Q Consensus       336 l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l--~~v~~~~~~~~l~~iYt~  413 (583)
                      ++.++.+|||++.+ |+.|+|||.|||+.|+||++||.+  +|.|+++        .|.+  .++++++|+.+|+|+|||
T Consensus        16 ~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~--~~~Es~~--------~v~~~~~~v~~~~l~~lldy~YTg   84 (480)
T PHA02790         16 LSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQ--KYTKNKD--------PVTRVCLDLDIHSLTSIVIYSYTG   84 (480)
T ss_pred             HHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcC--Ccccccc--------ceEEEecCcCHHHHHHHHHhheee
Confidence            34557899998755 568999999999999999999998  7777632        3443  489999999999999999


Q ss_pred             CCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCc--
Q 007949          414 GLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADS--  491 (583)
Q Consensus       414 ~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~--  491 (583)
                      ++ .++.+++++++.+|++||++.+++.|++||.++|   +++||+.++.+|+.|++.+|.+.|.+||.+||..|.++  
T Consensus        85 ~l-~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l---~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~  160 (480)
T PHA02790         85 KV-YIDSHNVVNLLRASILTSVEFIIYTCINFILRDF---RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDII  160 (480)
T ss_pred             eE-EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhC---CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccc
Confidence            99 8999999999999999999999999999999999   89999999999999999999999999999999999986  


Q ss_pred             hhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHh
Q 007949          492 REFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEA  542 (583)
Q Consensus       492 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~  542 (583)
                      ++|..|+..         ..++++++.+.+|    .+++ +++++|++++.
T Consensus       161 ~ef~~L~~~---------~lLssd~L~v~~E----e~V~-eav~~Wl~~~~  197 (480)
T PHA02790        161 DNFDYLSMK---------LILESDELNVPDE----DYVV-DFVIKWYMKRR  197 (480)
T ss_pred             hhhhhCCHH---------HhcccccCCCccH----HHHH-HHHHHHHHhhH
Confidence            899877542         2346677777788    4666 99999999853

>PHA03098 kelch-like protein; Provisional

Probab=99.94  E-value=3.5e-27  Score=257.19  Aligned_cols=194  Identities=18%  Similarity=0.276  Sum_probs=168.9

Q ss_pred             CCCCCcEEEEE--CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCC
Q 007949          339 VDDLADVCVRV--DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK  416 (583)
Q Consensus       339 ~~~~~Dv~~~~--~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~  416 (583)
                      ++.+|||++.+  +|++|+|||.+|+++|+||++||.+  +|.          ...|.+++ ++++|+.+|+|+|||++ 
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~--~~~----------~~~i~l~~-~~~~~~~~l~y~Ytg~~-   71 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKN--NFK----------ENEINLNI-DYDSFNEVIKYIYTGKI-   71 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhC--CCC----------CceEEecC-CHHHHHHHHHHhcCCce-
Confidence            68899999998  9999999999999999999999998  554          24688998 99999999999999999 


Q ss_pred             CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCchhHHH
Q 007949          417 DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRA  496 (583)
Q Consensus       417 ~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~  496 (583)
                      .++.+++.+|+.+|++|+++.|++.|+++|.+.+   +.+||+.++.+|..|++..|++.|.+||++||..+.++++|.+
T Consensus        72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l---~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~  148 (534)
T PHA03098         72 NITSNNVKDILSIANYLIIDFLINLCINYIIKII---DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIY  148 (534)
T ss_pred             EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence            8999999999999999999999999999999999   8999999999999999999999999999999999999999998


Q ss_pred             HHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHHhHHHHHHHHH
Q 007949          497 MLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLM  563 (583)
Q Consensus       497 l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~  563 (583)
                      |+.+    .+..  .++++++.+.+|    .+++ +++++|+++++..   |......+++-+|+++
T Consensus       149 l~~~----~l~~--ll~~~~L~v~~E----~~v~-~av~~W~~~~~~~---r~~~~~~ll~~vR~~~  201 (534)
T PHA03098        149 LSKN----ELIK--ILSDDKLNVSSE----DVVL-EIIIKWLTSKKNN---KYKDICLILKVLRITF  201 (534)
T ss_pred             CCHH----HHHH--HhcCCCcCcCCH----HHHH-HHHHHHHhcChhh---hHhHHHHHHhhccccc
Confidence            8765    2111  235566667777    4666 9999999998754   3445556777777654

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.90  E-value=1.9e-24  Score=208.08  Aligned_cols=189  Identities=21%  Similarity=0.346  Sum_probs=170.2

Q ss_pred             HhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhc
Q 007949          332 AMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY  411 (583)
Q Consensus       332 ~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY  411 (583)
                      .+..+..+..++||++++++++|+|||.|||+||+||++|+.+  +|.|+.       ...|.+++-..++|+.+|+|||
T Consensus        34 ~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYg--Gm~Es~-------q~~ipLq~t~~eAF~~lLrYiY  104 (620)
T KOG4350|consen   34 SFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYG--GMQESH-------QQLIPLQETNSEAFRALLRYIY  104 (620)
T ss_pred             HHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhh--hhhhhh-------hcccccccccHHHHHHHHHHHh
Confidence            3445677799999999999999999999999999999999998  666664       4679999888999999999999


Q ss_pred             CCCCC--CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhh
Q 007949          412 TDGLK--DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFA  489 (583)
Q Consensus       412 t~~~~--~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~  489 (583)
                      ||++.  ....+..++.|.+|.+|++..|.....+|+++.+   ..+|++.++..|..|+.++|...|+.|..+|-..++
T Consensus       105 tg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL---~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL  181 (620)
T KOG4350|consen  105 TGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEIL---KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLL  181 (620)
T ss_pred             hcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH---cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhh
Confidence            99982  2345789999999999999999999999999999   799999999999999999999999999999999999


Q ss_pred             CchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhh
Q 007949          490 DSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAE  544 (583)
Q Consensus       490 ~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~  544 (583)
                      ..++|..|+++       +++.+..++--..+|    +.+| .|+.+|.++++.+
T Consensus       182 ~~~sFn~LSk~-------sL~e~l~RDsFfApE----~~IF-lAv~~W~~~Nske  224 (620)
T KOG4350|consen  182 EDPSFNRLSKD-------SLKELLARDSFFAPE----LKIF-LAVRSWHQNNSKE  224 (620)
T ss_pred             cCcchhhhhHH-------HHHHHHhhhcccchH----HHHH-HHHHHHHhcCchh
Confidence            99999999998       666667778888889    8999 9999999998854

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.83  E-value=1.5e-20  Score=202.81  Aligned_cols=223  Identities=22%  Similarity=0.354  Sum_probs=169.8

Q ss_pred             CCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHH
Q 007949          168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI  247 (583)
Q Consensus       168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~  247 (583)
                      +.+|||++.+++++|+|||.|||+.||||++||+++++|+.+..|.+.++++.++..+++|+|||.+.++.+++++++.+
T Consensus        34 ~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~a  113 (571)
T KOG4441|consen   34 GLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEA  113 (571)
T ss_pred             CCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHH
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhchHHHHHHH--------H--HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcccCCC
Q 007949          248 CKVCKCESLQRII--------E--KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDH  317 (583)
Q Consensus       248 a~~~~~~~l~~~l--------~--~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  317 (583)
                      |..+|+..+.+.+        .  ||+++..+|+.++|.+|...+..|+.+||.               ++    ...++
T Consensus       114 A~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~---------------~v----~~~ee  174 (571)
T KOG4441|consen  114 ASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFA---------------EV----SKTEE  174 (571)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH---------------HH----hccHH
Confidence            9777755554433        2  999999999999999999999999999974               22    24788


Q ss_pred             ccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeee----ccCHHHHHHHcCccccccCCCCCCCCCCCee
Q 007949          318 NIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLA----SRSEYFKARLSRMKDFYEGKEGLPGDILPCI  393 (583)
Q Consensus       318 ~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~----~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i  393 (583)
                      |+.++.+++..++.+       +   ++.+.-|...|.+--.|+.    .|..++..++..                  |
T Consensus       175 fl~L~~~~l~~ll~~-------d---~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~------------------v  226 (571)
T KOG4441|consen  175 FLLLSLEELIGLLSS-------D---DLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEA------------------V  226 (571)
T ss_pred             hhCCCHHHHHhhccc-------c---CCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh------------------c
Confidence            999999999999877       5   5666555555555544432    244555555553                  4


Q ss_pred             ecCCCCHHHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHH
Q 007949          394 EEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRA  441 (583)
Q Consensus       394 ~l~~v~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~  441 (583)
                      +++-+++..+...+.   .+.+ .-....+.+++..|.+|++.+..+.
T Consensus       227 r~~ll~~~~l~~~v~---~~~~-~~~~~~c~~~l~ea~~~~~~~~~~~  270 (571)
T KOG4441|consen  227 RLPLLPPQFLVEIVE---SEPL-IKRDSACRDLLDEAKKYHLLPQRRP  270 (571)
T ss_pred             CccCCCHHHHHHHHh---hhhh-hccCHHHHHHHHHHHHHhhCcccCc
Confidence            555566555433222   2222 1223456666666666665554433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.5e-20  Score=162.92  Aligned_cols=127  Identities=24%  Similarity=0.285  Sum_probs=113.8

Q ss_pred             cchhhhc-c-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCChhHHHHHHHhCCHHHHH
Q 007949            7 STIDAEL-D-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAAR   83 (583)
Q Consensus         7 ~~~~~~~-~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~   83 (583)
                      .+++..+ . +..+|.+|+.||||        ||.||..|+.++|+.|+.+ |+++|..+..|.|+||||+..|+.++++
T Consensus        52 eiv~fLlsq~nv~~ddkDdaGWtP--------lhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaq  123 (226)
T KOG4412|consen   52 EIVYFLLSQPNVKPDDKDDAGWTP--------LHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQ  123 (226)
T ss_pred             hHHHHHHhcCCCCCCCccccCCch--------hhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHH
Confidence            4555666 2 78899999999999        7999999999999999998 9999999999999999999999999999


Q ss_pred             HHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        84 ~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|+++|+.++++|..|.| +|.||.  +.+++++|+..|+.++.  ++..|.||||.|-..+|
T Consensus       124 lLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~--qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  124 LLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT--QDKYGFTPLHHALAEGH  184 (226)
T ss_pred             HHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc--ccccCccHHHHHHhccC
Confidence            999999999999999998 588888  89999999999988888  79999999999944444

>PHA03098 kelch-like protein; Provisional

Probab=99.82  E-value=3e-20  Score=202.74  Aligned_cols=191  Identities=16%  Similarity=0.238  Sum_probs=159.6

Q ss_pred             CCCCCcEEEEE--CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHH
Q 007949          167 DSFPPDVVFYV--QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDL  244 (583)
Q Consensus       167 ~~~~~Dv~~~v--~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~l  244 (583)
                      ++.+|||++.+  +|+.|+|||.||+++|+||++||.+++.   +..|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l   81 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI   81 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence            35567999998  9999999999999999999999999888   46688888 999999999999999999999999999


Q ss_pred             HHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhccc
Q 007949          245 VKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSN  314 (583)
Q Consensus       245 l~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  314 (583)
                      +.+|..++++.|++.+.          ||+.++.+|..+++..|.+.|..|+..||.               ++    ..
T Consensus        82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~---------------~v----~~  142 (534)
T PHA03098         82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIE---------------LI----YN  142 (534)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH---------------HH----hc
Confidence            99999999888776654          899999999999999999999999999874               11    24


Q ss_pred             CCCccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeee----ccCHHHHHHHcCccccccCCCCCCCCCC
Q 007949          315 MDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLA----SRSEYFKARLSRMKDFYEGKEGLPGDIL  390 (583)
Q Consensus       315 ~~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~----~~S~~F~~~~~~~~~~~e~~~~~~~~~~  390 (583)
                      .++|..++.+.+..+|.+       +   ++.+..|...|.+...|+.    .|..++..++..                
T Consensus       143 ~~~f~~l~~~~l~~ll~~-------~---~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~----------------  196 (534)
T PHA03098        143 DPDFIYLSKNELIKILSD-------D---KLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKV----------------  196 (534)
T ss_pred             CchhhcCCHHHHHHHhcC-------C---CcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh----------------
Confidence            678999999999988877       5   5666666667777777663    355667777763                


Q ss_pred             CeeecCCCCHHHHHHHhh
Q 007949          391 PCIEEHDLSKETFEKMIE  408 (583)
Q Consensus       391 ~~i~l~~v~~~~~~~~l~  408 (583)
                        |+++.++++.+..+..
T Consensus       197 --vR~~~~~~~~l~~~~~  212 (534)
T PHA03098        197 --LRITFLSEEGIKKLKR  212 (534)
T ss_pred             --ccccccCHHHHHHHHH
Confidence              7777788877776654

>PHA02790 Kelch-like protein; Provisional

Probab=99.81  E-value=1.6e-20  Score=200.52  Aligned_cols=174  Identities=14%  Similarity=0.142  Sum_probs=138.0

Q ss_pred             CCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEc--CCCCHHHHHHHhhhhcCCcccCChhhHHHHH
Q 007949          168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSR--EKLSYPALYGLIHFFYSDRLEIAVDDMEDLV  245 (583)
Q Consensus       168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l--~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll  245 (583)
                      +.+|||++.+|+ .|+|||+|||+.||||++||++++.|+.. .+.+  .++++++++.+|+|+|||++.++.+|+++++
T Consensus        20 ~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll   97 (480)
T PHA02790         20 KKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLL   97 (480)
T ss_pred             hhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHH
Confidence            345699887665 89999999999999999999999998854 3443  4899999999999999999999999999999


Q ss_pred             HHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcccC
Q 007949          246 KICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNM  315 (583)
Q Consensus       246 ~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  315 (583)
                      .+|..+|++.+.+.|.          ||+.++.+|+.+++.+|.+.+.+|+.+||.               ++.  ....
T Consensus        98 ~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~---------------~v~--~~~~  160 (480)
T PHA02790         98 RASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFL---------------ELE--DDII  160 (480)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHH---------------HHh--cccc
Confidence            9998888666655543          899999999999999999999999999975               111  0112


Q ss_pred             CCccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHc
Q 007949          316 DHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLS  373 (583)
Q Consensus       316 ~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~  373 (583)
                      ++|..++.   .++|++       +   ++.+.-|...|.|...|+..+......++.
T Consensus       161 ~ef~~L~~---~~lLss-------d---~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~  205 (480)
T PHA02790        161 DNFDYLSM---KLILES-------D---ELNVPDEDYVVDFVIKWYMKRRNRLGNLLL  205 (480)
T ss_pred             hhhhhCCH---HHhccc-------c---cCCCccHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            56766764   344444       5   677777777888888888766555555554

>PHA02713 hypothetical protein; Provisional

Probab=99.81  E-value=3.8e-20  Score=200.53  Aligned_cols=174  Identities=20%  Similarity=0.216  Sum_probs=143.3

Q ss_pred             hhhcccccccCCCCCCCCCCCcEEEEEC-CEeEehhHHHHhhccHHHHHhhcCCCCCCc-ccEEEcCCCCHHHHHHHhhh
Q 007949          151 VVLGISGVTSNGASNSDSFPPDVVFYVQ-GRPIEAHRVILSARSVFFRRKFETDWRYRN-EIRFSREKLSYPALYGLIHF  228 (583)
Q Consensus       151 ~~~~~~~l~~~~~~~~~~~~~Dv~~~v~-~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~-~~~i~l~~v~~~~~~~lL~y  228 (583)
                      ...++.++..++.+      |||++.|+ |+.|+|||+|||++|+||++||+++++|.. +..|.++++++++|+.+|+|
T Consensus        12 ~l~~l~~lr~~~~l------~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y   85 (557)
T PHA02713         12 VVSNISNLLDDDIL------CDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY   85 (557)
T ss_pred             HHHHHHHHHhCCCC------CCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence            33455566666554      59999997 899999999999999999999999999764 67899999999999999999


Q ss_pred             hcCCcccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCch
Q 007949          229 FYSDRLEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRL  298 (583)
Q Consensus       229 lYtg~~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l  298 (583)
                      +|||.  ++.+++++++.+|..+|++.+++.|.          ||+.++.++..+.+..|.+.+.+|+++||.       
T Consensus        86 ~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~-------  156 (557)
T PHA02713         86 LYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIP-------  156 (557)
T ss_pred             hcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHH-------
Confidence            99997  68999999999998888777776554          899999988889998899999999999975       


Q ss_pred             hHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCCCc-EEEEECCEEEEeeeeee
Q 007949          299 PAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLAD-VCVRVDKKIFRCHQVVL  361 (583)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~~D-v~~~~~~~~~~ahr~iL  361 (583)
                              ++    ...++|..++.+.|.++|.+       +   | +.+..|...|.|.-.|+
T Consensus       157 --------~v----~~~~ef~~L~~~~l~~lL~~-------d---~~l~v~~Ee~v~eav~~W~  198 (557)
T PHA02713        157 --------TL----ITTDAFKKTVFEILFDIIST-------N---DNVYLYREGYKVTILLKWL  198 (557)
T ss_pred             --------HH----hCChhhhhCCHHHHHHHhcc-------c---cccCCCcHHHHHHHHHHHH
Confidence                    12    24688999999999999876       3   3 45555666666655554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2e-19  Score=155.91  Aligned_cols=118  Identities=23%  Similarity=0.250  Sum_probs=109.5

Q ss_pred             CCCCCCCC-CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhc-CCCc
Q 007949           16 IDLDASDF-SSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAIC   92 (583)
Q Consensus        16 ~din~~d~-~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~   92 (583)
                      ..+|.+++ +|+||        |||||..|+.+++.+|++ .+..+|.+|..||||||.|+..|+.++|+.|+.+ |+++
T Consensus        28 kSL~~r~dqD~Rt~--------LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv   99 (226)
T KOG4412|consen   28 KSLNARDDQDGRTP--------LHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV   99 (226)
T ss_pred             hhhhccccccCCce--------eeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc
Confidence            46788877 99999        799999999999999995 7888999999999999999999999999999999 9999


Q ss_pred             CccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           93 SEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        93 ~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |..+..|.| +||||.  +.+|+++|+++|+.+..  ++..|.||||=|..-+.
T Consensus       100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~--kD~~~qtplHRAAavGk  151 (226)
T KOG4412|consen  100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI--KDKQGQTPLHRAAAVGK  151 (226)
T ss_pred             ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc--cccccCchhHHHHhccc
Confidence            999999999 699988  89999999999999888  89999999999986665

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.76  E-value=5.9e-19  Score=170.46  Aligned_cols=175  Identities=18%  Similarity=0.208  Sum_probs=141.2

Q ss_pred             hhhcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhc
Q 007949          151 VVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFY  230 (583)
Q Consensus       151 ~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylY  230 (583)
                      |..++..+.....++      ||+|+|++.+|||||+|||+||.||++|+.++|.|+.+..|+++....++|+.+|+|||
T Consensus        31 fS~~~~~l~~~e~y~------DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiY  104 (620)
T KOG4350|consen   31 FSQSFDELFTSEDYS------DVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIY  104 (620)
T ss_pred             hhHHHHHHhhcCccc------ceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHh
Confidence            345566677777777      99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccC---ChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCc
Q 007949          231 SDRLEI---AVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDR  297 (583)
Q Consensus       231 tg~~~i---~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~  297 (583)
                      ||++.+   ..+-..+++.+|.+++...|...+.          |...+...|..+++++|...|..|.-+|-.    +.
T Consensus       105 tg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~----~l  180 (620)
T KOG4350|consen  105 TGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNAD----QL  180 (620)
T ss_pred             hcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHH----hh
Confidence            999865   4456789999999999776666544          445566789999999999999999987732    11


Q ss_pred             hhHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeee
Q 007949          298 LPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVL  361 (583)
Q Consensus       298 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL  361 (583)
                      |               ..+.|..++.+.|.+++.+           |..+-.+-+.|.|.+.|-
T Consensus       181 L---------------~~~sFn~LSk~sL~e~l~R-----------DsFfApE~~IFlAv~~W~  218 (620)
T KOG4350|consen  181 L---------------EDPSFNRLSKDSLKELLAR-----------DSFFAPELKIFLAVRSWH  218 (620)
T ss_pred             h---------------cCcchhhhhHHHHHHHHhh-----------hcccchHHHHHHHHHHHH
Confidence            1               3567888999999999988           555555555555554443

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.73  E-value=8.6e-18  Score=166.78  Aligned_cols=201  Identities=23%  Similarity=0.243  Sum_probs=165.2

Q ss_pred             HHHhcccccCCCCCcEEEEECC-----EEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHH
Q 007949          330 VEAMHISDHVDDLADVCVRVDK-----KIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFE  404 (583)
Q Consensus       330 l~~l~~l~~~~~~~Dv~~~~~~-----~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~  404 (583)
                      .+++..+++++..+|+.|.+++     ++++|||.+|+..|+.|.+||++  +|.+.       ...+|.++++.+.+|.
T Consensus       102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g--~~a~~-------~s~ei~lpdvepaaFl  172 (521)
T KOG2075|consen  102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYG--GLAED-------ASLEIRLPDVEPAAFL  172 (521)
T ss_pred             HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhcc--Ccccc-------cCceeecCCcChhHhH
Confidence            3445557888999999999973     67999999999999999999998  77775       3468999999999999


Q ss_pred             HHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHH-HHhcCcHHHHHHHHHHHHh
Q 007949          405 KMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLIL-SDMYGVFKVREYCLEVIAC  483 (583)
Q Consensus       405 ~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~-A~~~~~~~L~~~c~~~i~~  483 (583)
                      .+|+|+|++.+ .+..++++.++.+|++|.++.|.+.|.++|+.++   ...|.+..+-. |..++-++|.+.|++-|..
T Consensus       173 ~~L~flYsdev-~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q~A~lf~ep~Li~~c~e~id~  248 (521)
T KOG2075|consen  173 AFLRFLYSDEV-KLAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQRAKLFDEPSLISICLEVIDK  248 (521)
T ss_pred             HHHHHHhcchh-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhcCHHHHHHHHHHhhh
Confidence            99999999999 8999999999999999999999999999999998   56666655555 9999999999999999999


Q ss_pred             hHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHH
Q 007949          484 NFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESAL  553 (583)
Q Consensus       484 nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~  553 (583)
                      +|......++|.+.-..     .+.+..+..++...++|    +.++ +++++|.+.......-+...+.
T Consensus       249 ~~~~al~~EGf~did~~-----~dt~~evl~r~~l~~~e----~~lf-eA~lkw~~~e~~rs~~~~~~~~  308 (521)
T KOG2075|consen  249 SFEDALTPEGFCDIDST-----RDTYEEVLRRDTLEARE----FRLF-EAALKWAEAECQRSGGPVNGQN  308 (521)
T ss_pred             HHHhhhCccceeehhhH-----HHHHHHHHhhcccchhH----HHHH-HHHHhhccCcchhhcCCCCccc
Confidence            99999999988766422     11222233355555667    7888 9999999888765444433333

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.68  E-value=1.1e-16  Score=164.70  Aligned_cols=120  Identities=20%  Similarity=0.172  Sum_probs=112.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      |.++|..|++|.|+        |||||.+|+++++++|+++|+++|..+ ..|.||||||+++|+..++.+|+++||+++
T Consensus        68 g~~v~~~D~~g~tl--------LHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt  139 (600)
T KOG0509|consen   68 GESVNNPDREGVTL--------LHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPT  139 (600)
T ss_pred             CcCCCCCCcCCccc--------eeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc
Confidence            78899999999999        799999999999999999999999988 678999999999999999999999999999


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      .+|.+|-+ .|.||.  +.-++-+|+.++++++.  ++..|.|||+.|.++++.
T Consensus       140 ~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~--~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL--RDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC--cCCCCCCHHHHHHHhccc
Confidence            99999998 588887  88889999999999888  899999999999988874

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.66  E-value=3.9e-16  Score=151.38  Aligned_cols=182  Identities=20%  Similarity=0.260  Sum_probs=154.6

Q ss_pred             ccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC--CCCHHHHHHHhhhhcC
Q 007949          335 ISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH--DLSKETFEKMIEYMYT  412 (583)
Q Consensus       335 ~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~--~v~~~~~~~~l~~iYt  412 (583)
                      .++.++.-+||.+.+-|..++.|+..| ..|+||.+||++  .|+|++.     ....++|+  .++..+|..++.-+|.
T Consensus        62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~G--tw~es~~-----~iIqleI~Dp~Id~~al~~a~gsLY~  133 (488)
T KOG4682|consen   62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSG--TWKESSM-----NIIQLEIPDPNIDVVALQVAFGSLYR  133 (488)
T ss_pred             HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhcc--ccChhhC-----ceEEEEcCCCcccHHHHHHHHhhhhh
Confidence            355568889999999999999999999 788999999998  8999976     33444444  5999999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCch
Q 007949          413 DGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSR  492 (583)
Q Consensus       413 ~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~  492 (583)
                      +++ .|..+.+..++.+|..++++++.+.|.+.+++.+   ++.|++.+|..|-.||...+++.|.+++..||..+....
T Consensus       134 dEv-eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~l---spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q  209 (488)
T KOG4682|consen  134 DEV-EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL---SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQ  209 (488)
T ss_pred             hhe-eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc---ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHH
Confidence            999 8999999999999999999999999999999999   899999999999999999999999999999999998877


Q ss_pred             hHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHH
Q 007949          493 EFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWL  538 (583)
Q Consensus       493 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl  538 (583)
                      -+.+++.    .++..+  +.++++.+..-|   ..++ ..+..|+
T Consensus       210 ~l~ei~~----~Lm~~l--l~SpnLfvmq~E---fdLy-ttlk~Wm  245 (488)
T KOG4682|consen  210 LLKEISI----NLMKQL--LGSPNLFVMQVE---FDLY-TTLKKWM  245 (488)
T ss_pred             HHHhcCH----HHHHHH--hCCCCeEEEEee---ehHH-HHHHHHH
Confidence            5554444    343332  356777666633   5555 7778996

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.63  E-value=1.6e-15  Score=144.14  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             cCCCCCCC-CCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCChhHHHHHHH--hCCHHHHHHHHhc
Q 007949           15 EIDLDASD-FSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACL--AGHLDAARMLLES   88 (583)
Q Consensus        15 ~~din~~d-~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~   88 (583)
                      |+++|.++ ..|+||        ||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++
T Consensus        76 gadvn~~~~~~g~Tp--------Lh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~  147 (209)
T PHA02859         76 GADVNFKTRDNNLSA--------LHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS  147 (209)
T ss_pred             CCCCCccCCCCCCCH--------HHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            55555554 245555        4554432   24555555555555555555555555555443  2345555555555


Q ss_pred             CCCcCccCCCCchH-HHHHh---hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           89 GAICSEHTFDGDRC-HYAAL---NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        89 ga~~~~~~~~g~t~-~~aa~---~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      |++++.+|..|.|| |.++.   +.+++++|+++|++++.  ++..|.|||++|.
T Consensus       148 gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~--~d~~g~tpl~la~  200 (209)
T PHA02859        148 GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE--TNKSGYNCYDLIK  200 (209)
T ss_pred             CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHh
Confidence            55555555555552 32222   44555555555555444  4455555555544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.63  E-value=7.9e-16  Score=158.57  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             cchhhhcc-cCCCCCCC-CCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHH
Q 007949            7 STIDAELD-EIDLDASD-FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d-~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~   84 (583)
                      -+....+. |+|+|+.+ .-|.||        |||||++|++.+|..|+++||+++.+|..|.+|+|+|+..||.-++-+
T Consensus        92 ~v~r~li~~gadvn~~gG~l~stP--------LHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vay  163 (600)
T KOG0509|consen   92 DVARYLISHGADVNAIGGVLGSTP--------LHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAY  163 (600)
T ss_pred             HHHHHHHHcCCCccccCCCCCCCc--------chHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHH
Confidence            44555665 99999998 777899        799999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+..|++++.+|.+|+| +|+||.  ....+..|+..++.+... .+..|.||||.|+..+.
T Consensus       164 ll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~-d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  164 LLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT-DDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             HHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc-ccccCCchHHHHHhcCC
Confidence            99999999999999999 688888  333388999999988873 34889999999998766

>PHA02946 ankyin-like protein; Provisional

Probab=99.62  E-value=1.8e-15  Score=160.03  Aligned_cols=159  Identities=14%  Similarity=0.066  Sum_probs=126.8

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCC--HHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH--LDAARM   84 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~--~~~v~~   84 (583)
                      +++..+. |+++|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..++  .+++++
T Consensus        54 iv~~Ll~~Gadvn~~d~~G~Tp--------Lh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         54 FVEELLHRGYSPNETDDDGNYP--------LHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             HHHHHHHCcCCCCccCCCCCCH--------HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            4555555 89999999999999        799999999999999999999999999999999999988664  789999


Q ss_pred             HHhcCCCcCc-cCCCCchHHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhcccccccC
Q 007949           85 LLESGAICSE-HTFDGDRCHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSN  161 (583)
Q Consensus        85 Ll~~ga~~~~-~~~~g~t~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~  161 (583)
                      |+++|++++. .+..|.||+++|.  +.+++++|++.|++++.  .+..|.||||.|+..++...+.-.      -|...
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~--~d~~G~t~Lh~A~~~~~~~~~~v~------~Ll~~  197 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARI--VDKFGKNHIHRHLMSDNPKASTIS------WMMKL  197 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccc--cCCCCCCHHHHHHHhcCCCHHHHH------HHHHc
Confidence            9999999995 5888998766665  78999999999999887  788999999999875553222111      11111


Q ss_pred             CCCCCCCCCCcEEEEECCEeEehhHHHHh
Q 007949          162 GASNSDSFPPDVVFYVQGRPIEAHRVILS  190 (583)
Q Consensus       162 ~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~  190 (583)
                              ++|+...-.....|.|-++..
T Consensus       198 --------Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        198 --------GISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             --------CCCCcccCCCCCCHHHHHHHc
Confidence                    235555555566788876653

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.61  E-value=4.8e-16  Score=132.28  Aligned_cols=106  Identities=33%  Similarity=0.538  Sum_probs=90.1

Q ss_pred             ccccCCCCCcEEEEEC-CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCC
Q 007949          335 ISDHVDDLADVCVRVD-KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD  413 (583)
Q Consensus       335 ~l~~~~~~~Dv~~~~~-~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~  413 (583)
                      .+++++.++|+++.++ +..|+|||.+|+++|+||+.||.+. .+.+.       ....|.++++++++|+.+++|+|++
T Consensus         3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~-~~~~~-------~~~~i~~~~~~~~~~~~~l~~~Y~~   74 (111)
T PF00651_consen    3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS-KFKES-------TVPEISLPDVSPEAFEAFLEYMYTG   74 (111)
T ss_dssp             HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT-TSTTS-------SEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred             HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccc-ccccc-------cccccccccccccccccccccccCC
Confidence            3455589999999999 8999999999999999999999972 13332       3347899999999999999999999


Q ss_pred             CCCCCC-HHhHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007949          414 GLKDID-PDQAEEMFDAASRYLLFPLKRAVADVLLLH  449 (583)
Q Consensus       414 ~~~~i~-~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~  449 (583)
                      .+ .++ .+++.+++.+|++|+++.|++.|..+|.++
T Consensus        75 ~~-~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   75 EI-EINSDENVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             EE-EEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             cc-cCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            98 677 899999999999999999999999999764

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.61  E-value=2e-15  Score=162.45  Aligned_cols=154  Identities=17%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             chhhhcc-cCCCCCCCCC-CCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFS-SSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~-g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++...++ |+++|..|.. |+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tp--------Lh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTA--------LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCH--------HHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            3444455 8999999999 9999        7999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh---hHHHHHHHHhCCCCCCCCCCc-ccCCccchhccccccccchhhhhhhccccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL---NLKVRKLLKAYEARPPPLGPL-QAALRDTFLGCGANRQFLEEAEVVLGISGVTS  160 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~---~~~i~~~L~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~  160 (583)
                      +++|++++.+|..|.| +|+|+.   +.+++++|+++|++++.  ++ ..|.||||.|+... +..         .-|+.
T Consensus       221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~--~~~~~g~TpLh~A~~~~-~~v---------~~Ll~  288 (477)
T PHA02878        221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA--KSYILGLTALHSSIKSE-RKL---------KLLLE  288 (477)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc--cCCCCCCCHHHHHccCH-HHH---------HHHHH
Confidence            9999999999999999 577774   68999999999999887  44 37999999995321 111         11222


Q ss_pred             CCCCCCCCCCCcEEEEECCEeEehhHHHH
Q 007949          161 NGASNSDSFPPDVVFYVQGRPIEAHRVIL  189 (583)
Q Consensus       161 ~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL  189 (583)
                      .        ++|+..+-.....|.|.++.
T Consensus       289 ~--------gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        289 Y--------GADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             C--------CCCCCCcCCCCCCHHHHHHH
Confidence            1        23666665556677776654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.61  E-value=4.7e-15  Score=157.63  Aligned_cols=126  Identities=24%  Similarity=0.284  Sum_probs=115.1

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      +...+. |+++|.+|..|.||        ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       107 i~~ll~~g~d~n~~~~~g~T~--------Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  178 (434)
T PHA02874        107 IKTILDCGIDVNIKDAELKTF--------LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE  178 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCccH--------HHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            344444 88999999999999        899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           88 SGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        88 ~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      +|++++..+..|.| +|+|+.  +.+++++|++.|+++..  ++..|.||||.|+..++.
T Consensus       179 ~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~--~~~~g~TpL~~A~~~~~~  236 (434)
T PHA02874        179 KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN--KCKNGFTPLHNAIIHNRS  236 (434)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC--CCCCCCCHHHHHHHCChH
Confidence            99999999999998 577777  89999999999998877  678999999999987664

>PHA02791 ankyrin-like protein; Provisional

Probab=99.61  E-value=3.2e-15  Score=147.49  Aligned_cols=147  Identities=13%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCc-h-HHHHHh--hHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD-R-CHYAAL--NLKVR  112 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-t-~~~aa~--~~~i~  112 (583)
                      ||+|+..|+.++++.|+..|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|+ | +|+|+.  +.+++
T Consensus        65 Lh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         65 LHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHH
Confidence            6777777777777777777777777777777777777777777777777777777777666664 4 355555  66777


Q ss_pred             HHHHhCCCCCCCCCCcccCCccchhccccccc-cchhhhhhhcccccccCCCCCCCCCCCcEEEEEC-CEeEehhHHHHh
Q 007949          113 KLLKAYEARPPPLGPLQAALRDTFLGCGANRQ-FLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQ-GRPIEAHRVILS  190 (583)
Q Consensus       113 ~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~-~~~~~~Hk~iL~  190 (583)
                      ++|++++.+..   ....|.||||.|+..++. ..+-         |+.-        ++|+-..-. |..-+.|-++-.
T Consensus       145 k~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~l---------LL~~--------gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        145 SYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMIL---------LLDY--------MTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             HHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHH---------HHHC--------CCCCCcccCCCCChHHHHHHHc
Confidence            77777654321   012367777777766662 1111         1111        113322222 222236777777


Q ss_pred             hccHHHHHhhcCC
Q 007949          191 ARSVFFRRKFETD  203 (583)
Q Consensus       191 a~S~~f~~~~~~~  203 (583)
                      .+....+-++..+
T Consensus       205 ~~~e~v~lLl~~G  217 (284)
T PHA02791        205 KDLEMLQALFKYD  217 (284)
T ss_pred             CCHHHHHHHHHCC
Confidence            6777777777543

>PHA02741 hypothetical protein; Provisional

Probab=99.61  E-value=3.4e-15  Score=137.03  Aligned_cols=117  Identities=17%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCChhHHHHHHHhCC----HHHHHHHH
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE------SGVNVNARDQWDSVALYYACLAGH----LDAARMLL   86 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll   86 (583)
                      .++.+|..|.||        ||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+
T Consensus        13 ~~~~~~~~g~t~--------Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll   84 (169)
T PHA02741         13 MIAEKNSEGENF--------FHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI   84 (169)
T ss_pred             HhhccccCCCCH--------HHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH
Confidence            366788899999        899999999999998854      368899999999999999999999    58899999


Q ss_pred             hcCCCcCccCC-CCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTF-DGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~-~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++.++. .|.| +|+|+.  +.+++++|+. .|++++.  .+..|.||||+|+..++
T Consensus        85 ~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~--~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         85 ELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF--CNADNKSPFELAIDNED  144 (169)
T ss_pred             HcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc--CCCCCCCHHHHHHHCCC
Confidence            99999999985 8998 577777  8999999997 5888777  68899999999998877

>PHA02791 ankyrin-like protein; Provisional

Probab=99.60  E-value=4.6e-15  Score=146.41  Aligned_cols=123  Identities=11%  Similarity=0.064  Sum_probs=106.6

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCh-hHHHHHHHhCCHHHHHHHH
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDS-VALYYACLAGHLDAARMLL   86 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +...+. |+++|.+|..|+||        ||+|+..|+.++++.|+++|++++.++..|+ ||||+|+..|+.+++++|+
T Consensus        77 V~lLL~~Gadvn~~d~~G~Tp--------Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL  148 (284)
T PHA02791         77 VKILLFSGMDDSQFDDKGNTA--------LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL  148 (284)
T ss_pred             HHHHHHCCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHH
Confidence            334444 88999999999999        8999999999999999999999999998885 9999999999999999999


Q ss_pred             hcCCCcCccC-CCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCcc-chhcccccc
Q 007949           87 ESGAICSEHT-FDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRD-TFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~-~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~-L~~A~~~~~  143 (583)
                      ++|.+.  .+ ..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|| ||.|+..++
T Consensus       149 ~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~--~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        149 SEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             hcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCc--ccCCCCChHHHHHHHcCC
Confidence            987643  23 24777 588887  89999999999999887  67788877 999998887

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.60  E-value=2.4e-15  Score=132.15  Aligned_cols=150  Identities=21%  Similarity=0.297  Sum_probs=126.1

Q ss_pred             cccccCCCCCcEEEEEC---CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhh
Q 007949          334 HISDHVDDLADVCVRVD---KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYM  410 (583)
Q Consensus       334 ~~l~~~~~~~Dv~~~~~---~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~i  410 (583)
                      ..+...+.|||+++.+.   ++.++|||.+|++||++++  |.+  +-.|        ......+.++++++|...++||
T Consensus        58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN--~~de--------kse~~~~dDad~Ea~~t~iRWI  125 (280)
T KOG4591|consen   58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FAN--GGDE--------KSEELDLDDADFEAFHTAIRWI  125 (280)
T ss_pred             HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hcc--CCCc--------chhhhcccccCHHHHHHhheee
Confidence            34555699999999998   5779999999999999886  333  1111        2345778899999999999999


Q ss_pred             cCCCCCCC--CHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHh
Q 007949          411 YTDGLKDI--DPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETF  488 (583)
Q Consensus       411 Yt~~~~~i--~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v  488 (583)
                      ||+++ ++  ......++...|+.|+++.|+..|+.-+...+   +++||+.+|++|+..++..|...|.+.|+.++..+
T Consensus       126 YTDEi-dfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l---~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL  201 (280)
T KOG4591|consen  126 YTDEI-DFKEDDEFLLELCELANRFQLELLKERCEKGLGALL---HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL  201 (280)
T ss_pred             ecccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh---hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence            99998 44  45678999999999999999999999999998   79999999999999999999999999999998876


Q ss_pred             hCchhHHHHHhc
Q 007949          489 ADSREFRAMLLT  500 (583)
Q Consensus       489 ~~~~~f~~l~~~  500 (583)
                      - ...|.+++..
T Consensus       202 ~-~a~FaqMs~a  212 (280)
T KOG4591|consen  202 G-KADFAQMSAA  212 (280)
T ss_pred             C-hHHHHhccHH
Confidence            4 3567766554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.60  E-value=4.2e-15  Score=146.56  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC----CCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD----QWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      +-.+|+.|+||+       ||.|+..|+.++++.|+++|+++|.++    ..|.||||+|+..|+.+++++|+++||+++
T Consensus        25 ~~~~d~~~~~~l-------L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN   97 (300)
T PHA02884         25 IKKKNKICIANI-------LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN   97 (300)
T ss_pred             hhccCcCCCCHH-------HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence            456889999996       899999999999999999999999874    589999999999999999999999999999


Q ss_pred             cc-CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           94 EH-TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        94 ~~-~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      .. +..|.| +|.|+.  +.+++++|+.+|++++.  ++..|.||||.|+..++.
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~--kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADINI--QTNDMVTPIELALMICNN  150 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHhCCh
Confidence            86 457888 576666  89999999999999988  788999999999875553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.58  E-value=8.1e-15  Score=158.23  Aligned_cols=173  Identities=17%  Similarity=0.175  Sum_probs=116.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHH--HcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhC--CHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEAS--RAGDVDRLRYILESGVNVNARDQWDSVALYYACLAG--HLDA   81 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~   81 (583)
                      .++...++ |+++|..|..|.||        ||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.++
T Consensus        87 ~iv~~Ll~~ga~i~~~d~~g~tp--------L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         87 EIVKLLLEYGANVNAPDNNGITP--------LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCch--------hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH
Confidence            34444454 77888888888888        68888  888888888888888888888888888888888888  7888


Q ss_pred             HHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccC------Cccchhccccccccchhhhhh
Q 007949           82 ARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA------LRDTFLGCGANRQFLEEAEVV  152 (583)
Q Consensus        82 v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~------~t~L~~A~~~~~~~l~~~~~~  152 (583)
                      +++|+++|++++..+..|.| +|+|+.  +.+++++|+++|+++..  .+..|      .||||.|+..++...+--.. 
T Consensus       159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~-  235 (480)
T PHA03100        159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA--GDIETLLFTIFETPLHIAACYNEITLEVVNY-  235 (480)
T ss_pred             HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC--CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHH-
Confidence            88888888888888877777 466665  67788888888877666  45555      77788887766621111111 


Q ss_pred             hcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCC
Q 007949          153 LGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETD  203 (583)
Q Consensus       153 ~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~  203 (583)
                           |+..+        +|+...-.....|.|.++....-..++.++..+
T Consensus       236 -----Ll~~g--------~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g  273 (480)
T PHA03100        236 -----LLSYG--------VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG  273 (480)
T ss_pred             -----HHHcC--------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                 11111        133222233445677777666666666666544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=2.2e-15  Score=148.91  Aligned_cols=118  Identities=22%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |+++|..+.-..||        |-.||-.|+.+++++|+++|+|++..|..|.|.||+||..||.+++++|++.|+|+|.
T Consensus       107 ga~VN~tT~TNStP--------LraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~  178 (615)
T KOG0508|consen  107 GASVNDTTRTNSTP--------LRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA  178 (615)
T ss_pred             cCccccccccCCcc--------HHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch
Confidence            78899888888889        6889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++..|+| +|.+|.  +.+++++|+.+|+....   +..|-|||..|...++
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~---d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV---DGHGMTPLLLAAVTGH  227 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCceeee---cCCCCchHHHHhhhcc
Confidence            9999999 788887  89999999999998776   6679999999998888

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.57  E-value=1e-14  Score=156.99  Aligned_cols=125  Identities=19%  Similarity=0.212  Sum_probs=112.6

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHh-CCHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA-GHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~   84 (583)
                      .++...+. |+++|..|..|+||        ||+|+..|+.++++.|++.|++++.+|..|+||||+|+.. ++.+++++
T Consensus       182 ~iv~~Ll~~gad~n~~d~~g~tp--------Lh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~  253 (477)
T PHA02878        182 RLTELLLSYGANVNIPDKTNNSP--------LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKL  253 (477)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCH--------HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHH
Confidence            44555565 89999999999999        8999999999999999999999999999999999999975 78999999


Q ss_pred             HHhcCCCcCccCC-CCchH-HHHHhhHHHHHHHHhCCCCCCCCCCcccCCccchhcccc
Q 007949           85 LLESGAICSEHTF-DGDRC-HYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus        85 Ll~~ga~~~~~~~-~g~t~-~~aa~~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      |+++|++++..+. .|.|| |.|+.+.+++++|+++|++++.  .+..|.||||.|+..
T Consensus       254 Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~--~d~~g~TpL~~A~~~  310 (477)
T PHA02878        254 LLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINS--LNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHHcCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHH
Confidence            9999999999886 78885 6665589999999999999988  789999999999963

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.57  E-value=1.4e-14  Score=123.12  Aligned_cols=96  Identities=27%  Similarity=0.433  Sum_probs=85.0

Q ss_pred             CCCcEEEEEC-CEeEehhHHHHhhccHHHHHhhcCC-CCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCC-hhhHHHHH
Q 007949          169 FPPDVVFYVQ-GRPIEAHRVILSARSVFFRRKFETD-WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIA-VDDMEDLV  245 (583)
Q Consensus       169 ~~~Dv~~~v~-~~~~~~Hk~iL~a~S~~f~~~~~~~-~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~-~~~~~~ll  245 (583)
                      .++|++|.++ +..|+|||.||+++|+||+.+|.+. +.+.+...+.++++++++|..+++|+|+|.+.++ .+++.+++
T Consensus         9 ~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll   88 (111)
T PF00651_consen    9 EFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELL   88 (111)
T ss_dssp             TS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHH
T ss_pred             CCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHH
Confidence            4569999999 8999999999999999999999998 6777777899999999999999999999999998 99999999


Q ss_pred             HHHhHhchHHHHHHHHHHH
Q 007949          246 KICKVCKCESLQRIIEKEL  264 (583)
Q Consensus       246 ~~a~~~~~~~l~~~l~~~l  264 (583)
                      .+|+.++++.|.+.+.+.+
T Consensus        89 ~lA~~~~~~~L~~~~~~~l  107 (111)
T PF00651_consen   89 ELADKLQIPELKKACEKFL  107 (111)
T ss_dssp             HHHHHTTBHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHH
Confidence            9999999999888887543

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.56  E-value=1.4e-14  Score=153.10  Aligned_cols=170  Identities=14%  Similarity=0.115  Sum_probs=112.5

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc------------------------
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA------------------------   61 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------------   61 (583)
                      -++...++ |+++|..+..|.||        ||+|+..|+.+++++|+++|++++.                        
T Consensus        16 ~iv~~Ll~~g~~~n~~~~~g~tp--------L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L   87 (413)
T PHA02875         16 DIARRLLDIGINPNFEIYDGISP--------IKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL   87 (413)
T ss_pred             HHHHHHHHCCCCCCccCCCCCCH--------HHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH
Confidence            34455555 78888888888888        4555555555555555555544332                        


Q ss_pred             ----------cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCc
Q 007949           62 ----------RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPL  128 (583)
Q Consensus        62 ----------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~  128 (583)
                                .+..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~--~d  165 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI--ED  165 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC--CC
Confidence                      3456888888888888888888888888888888888887 566666  78888888888888776  67


Q ss_pred             ccCCccchhccccccc-cchhhhhhhcccccccCCCCCCCCCCCcEEEEE-CCEeEehhHHHHhhccHHHHHhhcCC
Q 007949          129 QAALRDTFLGCGANRQ-FLEEAEVVLGISGVTSNGASNSDSFPPDVVFYV-QGRPIEAHRVILSARSVFFRRKFETD  203 (583)
Q Consensus       129 ~~~~t~L~~A~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~  203 (583)
                      ..|.||||+|+..++. .++.         |+..        ++|+.... .|...+.|-++-..+....+-++..+
T Consensus       166 ~~g~TpL~~A~~~g~~eiv~~---------Ll~~--------ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        166 CCGCTPLIIAMAKGDIAICKM---------LLDS--------GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHH---------HHhC--------CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence            7888888888876652 1111         2111        12443332 33345666666666666666666543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.56  E-value=9.6e-15  Score=135.72  Aligned_cols=115  Identities=23%  Similarity=0.235  Sum_probs=107.5

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ..|+|..|+.|.+|        ||+||+.|+..+++.|+.+|+.+|..+....||||+|+..||.++++.|+.+.+|+|+
T Consensus        24 ehdln~gddhgfsp--------lhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna   95 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSP--------LHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA   95 (448)
T ss_pred             ccccccccccCcch--------hhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch
Confidence            46789999999999        7999999999999999999999999999899999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      .+..|+| +||+|.  ...+.+=|+..|+.+++  .++.|.|||..|-
T Consensus        96 vnehgntplhyacfwgydqiaedli~~ga~v~i--cnk~g~tpldkak  141 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI--CNKKGMTPLDKAK  141 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHhccceeee--cccCCCCchhhhc
Confidence            9999998 699998  77788999999999988  6899999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.56  E-value=1.4e-14  Score=125.05  Aligned_cols=107  Identities=27%  Similarity=0.250  Sum_probs=97.2

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchH-HHHHh--hH
Q 007949           34 NGDVFEASRAGDVDRLRYILESGVN-VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL--NL  109 (583)
Q Consensus        34 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~  109 (583)
                      ...+.+|+..|....|+.|++..++ +|.+|.+|+||||-|+++||.++++.|+..||+++.+...|+|| |-|+.  +.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            3458899999999999999997776 89999999999999999999999999999999999999999995 66555  89


Q ss_pred             HHHHHHHhCCCCCCCCCCcccCCccchhccccc
Q 007949          110 KVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN  142 (583)
Q Consensus       110 ~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~  142 (583)
                      +++..|+++|++++.  ......||||+||...
T Consensus       144 ~va~~LLqhgaDVnA--~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNA--QTKGLLTPLHLAAGNR  174 (228)
T ss_pred             hHHHHHHhccCcccc--cccccchhhHHhhccc
Confidence            999999999999998  5777889999999654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.55  E-value=5.1e-15  Score=132.54  Aligned_cols=120  Identities=19%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ..-+|..|+.|.||        |+||+..|++++|++|+..|++++...+...|+|.+|+..|..+++++|+.++.|+|.
T Consensus       150 ~n~VN~~De~GfTp--------LiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv  221 (296)
T KOG0502|consen  150 NNKVNACDEFGFTP--------LIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNV  221 (296)
T ss_pred             hccccCccccCchH--------hHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce
Confidence            56689999999999        7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      .|++|.| +.+|++  +.++++.|++.|+++..  .++.|.+++.+|+.-+-.
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~--e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ--EDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCccc--ccccCCcHHHHHHHhhhH
Confidence            9999999 577777  89999999999999888  789999999999976554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.55  E-value=1.4e-14  Score=158.59  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=41.7

Q ss_pred             CCCCCC-CCCCCCCCCCCCcHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCC--HHHHHHHHhcCC
Q 007949           16 IDLDAS-DFSSSVPLKKVPNGDVFEASR--AGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH--LDAARMLLESGA   90 (583)
Q Consensus        16 ~din~~-d~~g~tpl~~~~~~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~ga   90 (583)
                      +|+|.+ |..|.||        ||+|+.  .++.+++++|+++|+++|.+|..|+||||+|+..|+  .+++++|+++||
T Consensus       167 ADIN~~~d~~G~Tp--------LH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA  238 (764)
T PHA02716        167 VNLNYVCKKTGYGI--------LHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG  238 (764)
T ss_pred             CCcccccCCCCCcH--------HHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            555555 5555555        454432  234555555555555555555555555555555553  255555555555


Q ss_pred             CcCccCCCCch
Q 007949           91 ICSEHTFDGDR  101 (583)
Q Consensus        91 ~~~~~~~~g~t  101 (583)
                      +++.++..|.|
T Consensus       239 DVN~kD~~G~T  249 (764)
T PHA02716        239 DMDMKCVNGMS  249 (764)
T ss_pred             CCCCCCCCCCC
Confidence            55555555555

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=132.27  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=102.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHH---HHHHHh
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDV----DRLRYILESGVNVNARDQWDSVALYYACLAGHLDA---ARMLLE   87 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~---v~~Ll~   87 (583)
                      |++++..+..+.++        +|+||+.|+.    ++++.|++.|+.++.+|..|+||||+|+..|+.+.   +++|++
T Consensus        10 ~~~~~~~~~~~~~~--------l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~   81 (166)
T PHA02743         10 NLGAVEIDEDEQNT--------FLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN   81 (166)
T ss_pred             chHHhhhccCCCcH--------HHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH
Confidence            56777788888888        7999999998    55667778899999999999999999999988654   789999


Q ss_pred             cCCCcCccC-CCCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCccchhcccccc
Q 007949           88 SGAICSEHT-FDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        88 ~ga~~~~~~-~~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|++++.++ ..|.| +|+++.  +.+++++|+. .|+++..  ++..|.||||+|+..++
T Consensus        82 ~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~--~d~~g~tpL~~A~~~~~  140 (166)
T PHA02743         82 MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA--INYQHETAYHIAYKMRD  140 (166)
T ss_pred             cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC--cCCCCCCHHHHHHHcCC
Confidence            999999998 47988 588877  8899999995 7888877  68899999999998776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.54  E-value=3.5e-14  Score=134.87  Aligned_cols=112  Identities=19%  Similarity=0.197  Sum_probs=98.6

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcC--CHHHHHHHHHcCCCCCccC-CCChhHHHHHHHh---CCHHHHHHHHhcCCC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAG--DVDRLRYILESGVNVNARD-QWDSVALYYACLA---GHLDAARMLLESGAI   91 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~   91 (583)
                      +|..|..|.||        ||+|+..+  +.+++++|+++|+++|.++ ..|+||||+|+..   ++.+++++|+++|++
T Consensus        44 ~n~~~~~g~Tp--------Lh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad  115 (209)
T PHA02859         44 VNDCNDLYETP--------IFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS  115 (209)
T ss_pred             hhccCccCCCH--------HHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC
Confidence            67788999999        79999854  8999999999999999997 5899999998764   479999999999999


Q ss_pred             cCccCCCCchH-HHHHh----hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           92 CSEHTFDGDRC-HYAAL----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        92 ~~~~~~~g~t~-~~aa~----~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      ++.+|..|.|| |.++.    +.+++++|+++|++++.  ++..|.||||.++
T Consensus       116 in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~--~d~~g~t~Lh~~a  166 (209)
T PHA02859        116 ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN--KDFDNNNILYSYI  166 (209)
T ss_pred             CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc--ccCCCCcHHHHHH
Confidence            99999999995 66654    58899999999999887  7889999999643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.54  E-value=2.9e-14  Score=153.55  Aligned_cols=127  Identities=20%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCChhHHHHHHHhC-CHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAG---DVDRLRYILESGVNVNARDQWDSVALYYACLAG-HLDA   81 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-~~~~   81 (583)
                      -++...+. |+++|.++..|.||        ||+|+..|   +.++++.|++.|+++|.+|..|+||||+|+..| +.++
T Consensus        28 ~~v~~Ll~~ga~vn~~~~~g~t~--------Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         28 EEVRRLLAAGADVNFRGEYGKTP--------LHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             HHHHHHHHcCCCcccCCCCCCCH--------HHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHH
Confidence            34555565 89999999999999        79999999   999999999999999999999999999999999 5999


Q ss_pred             HHHHHhcCCCcCccCCCCch-HHHHHh----hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           82 ARMLLESGAICSEHTFDGDR-CHYAAL----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        82 v~~Ll~~ga~~~~~~~~g~t-~~~aa~----~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|+++|++++..+..|.| +|+++.    +.+++++|+++|++++.  .+..|.||||+|+..++
T Consensus       100 v~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~--~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095        100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA--LDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCC
Confidence            99999999999999999998 577773    67899999999999887  78899999999987664

>PHA02798 ankyrin-like protein; Provisional

Probab=99.53  E-value=3.7e-14  Score=152.92  Aligned_cols=127  Identities=15%  Similarity=0.167  Sum_probs=108.2

Q ss_pred             ccchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHc-----CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhC--
Q 007949            6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRA-----GDVDRLRYILESGVNVNARDQWDSVALYYACLAG--   77 (583)
Q Consensus         6 ~~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--   77 (583)
                      ..+++..++ |+|+|.+|..|.||        ||.|+..     ++.++++.|+++|+++|.+|..|+||||+|+..+  
T Consensus        51 ~~iv~~Ll~~Gadvn~~d~~g~Tp--------L~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         51 TDIVKLFINLGANVNGLDNEYSTP--------LCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCh--------HHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc
Confidence            356777776 99999999999999        7888753     7789999999999999999999999999999875  


Q ss_pred             -CHHHHHHHHhcCCCcCccCCCCchH-HHHHh--h---HHHHHHHHhCCCCCCCCCCcccCCccchhcccc
Q 007949           78 -HLDAARMLLESGAICSEHTFDGDRC-HYAAL--N---LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus        78 -~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~---~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                       +.+++++|+++|++++..|..|.|| |+++.  +   .+++++|++.|++++.. .+..|.||||.+...
T Consensus       123 ~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~-~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH-NNKEKYDTLHCYFKY  192 (489)
T ss_pred             ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc-cCcCCCcHHHHHHHh
Confidence             7899999999999999999999984 66665  4   78999999999988762 235788999987653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.53  E-value=4.7e-14  Score=149.98  Aligned_cols=127  Identities=21%  Similarity=0.240  Sum_probs=112.2

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCC-----------------------CCCcc
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-----------------------NVNAR   62 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-----------------------~~~~~   62 (583)
                      -+++..++ |+++|..+..|.||        ||+|+..|+.+++++|+++|+                       +++.+
T Consensus        49 ~iv~~Ll~~Ga~~n~~~~~~~t~--------L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~  120 (434)
T PHA02874         49 KIVELFIKHGADINHINTKIPHP--------LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK  120 (434)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC
Confidence            44555565 88899999999999        899999999999999987764                       46778


Q ss_pred             CCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           63 DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        63 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      |..|.||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  .+..|.||||.|+
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~--~~~~g~tpL~~A~  198 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV--KDNNGESPLHNAA  198 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC--CCCCCCCHHHHHH
Confidence            889999999999999999999999999999999999998 577777  89999999999998877  6889999999999


Q ss_pred             cccc
Q 007949          140 GANR  143 (583)
Q Consensus       140 ~~~~  143 (583)
                      ..++
T Consensus       199 ~~g~  202 (434)
T PHA02874        199 EYGD  202 (434)
T ss_pred             HcCC
Confidence            8776

>PHA03095 ankyrin-like protein; Provisional

Probab=99.53  E-value=4.2e-14  Score=152.28  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=111.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCChhHHHHHH--HhCCHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAG-DVDRLRYILESGVNVNARDQWDSVALYYAC--LAGHLDAA   82 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~~~v   82 (583)
                      -++...++ |+|+|.+|..|+||        ||+|+..| +.+++++|+++|++++.+|..|+||||+|+  ..++.+++
T Consensus        64 ~iv~~Ll~~Gadin~~~~~g~Tp--------Lh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv  135 (471)
T PHA03095         64 DIVRLLLEAGADVNAPERCGFTP--------LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVI  135 (471)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCH--------HHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHH
Confidence            34555666 99999999999999        89999999 599999999999999999999999999999  45688999


Q ss_pred             HHHHhcCCCcCccCCCCchH-HHHHh----hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           83 RMLLESGAICSEHTFDGDRC-HYAAL----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        83 ~~Ll~~ga~~~~~~~~g~t~-~~aa~----~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|+++|++++..+..|.|| |.++.    +.+++++|+++|+++..  .+..|.||||.|+...+
T Consensus       136 ~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~--~d~~g~t~Lh~~~~~~~  199 (471)
T PHA03095        136 RLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA--VDDRFRSLLHHHLQSFK  199 (471)
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHHCC
Confidence            99999999999999999995 55554    57899999999998877  47889999999997544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.51  E-value=5.9e-14  Score=151.49  Aligned_cols=127  Identities=20%  Similarity=0.285  Sum_probs=106.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAG--DVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAAR   83 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~   83 (583)
                      .++...++ |++++..+..|.||        ||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus       122 ~iv~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~  193 (480)
T PHA03100        122 SIVEYLLDNGANVNIKNSDGENL--------LHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIK  193 (480)
T ss_pred             HHHHHHHHcCCCCCccCCCCCcH--------HHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHH
Confidence            55566665 88899899999999        79999988  889999999999999888888999999999999999999


Q ss_pred             HHHhcCCCcCccCCCC------ch-HHHHHh--h--HHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           84 MLLESGAICSEHTFDG------DR-CHYAAL--N--LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        84 ~Ll~~ga~~~~~~~~g------~t-~~~aa~--~--~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|+++|++++..+..|      .| +|.++.  +  .+++++|+++|++++.  ++..|.||||.|+..++
T Consensus       194 ~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~--~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        194 FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI--KDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            9999999988888877      66 466666  5  7888899988888777  67888899999988766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.51  E-value=8.4e-14  Score=127.25  Aligned_cols=107  Identities=17%  Similarity=0.184  Sum_probs=95.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHH---HHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHHHh-cC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDR---LRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLE-SG   89 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~---v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~g   89 (583)
                      |.+++.+|..|+||        ||+|+..|+.+.   +++|+..|+++|.+| ..|+||||+|+..|+.+++++|+. .|
T Consensus        47 g~~~~~~d~~g~t~--------Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g  118 (166)
T PHA02743         47 GHLLHRYDHHGRQC--------THMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLG  118 (166)
T ss_pred             chhhhccCCCCCcH--------HHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC
Confidence            78899999999999        899999988654   789999999999998 589999999999999999999995 79


Q ss_pred             CCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccC
Q 007949           90 AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA  131 (583)
Q Consensus        90 a~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~  131 (583)
                      ++++.++..|.| +|+++.  +.+++++|+.+|++++.  ++..|
T Consensus       119 ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~--~~~~~  161 (166)
T PHA02743        119 VNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD--PLSIG  161 (166)
T ss_pred             CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cccCC
Confidence            999999999998 577666  78999999999998877  44444

>PHA02946 ankyin-like protein; Provisional

Probab=99.51  E-value=7e-14  Score=147.96  Aligned_cols=126  Identities=16%  Similarity=0.223  Sum_probs=109.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC--HHHHHHHHHcCCCCCc-cCCCChhHHHHHHHhCCHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGD--VDRLRYILESGVNVNA-RDQWDSVALYYACLAGHLDAA   82 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~--~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v   82 (583)
                      -+++..+. |+++|.+|..|+||        ||+|+..++  .+++++|+++|++++. .|..|.|||| |+..|+.+++
T Consensus        86 eiv~lLL~~GAdin~~d~~g~Tp--------Lh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv  156 (446)
T PHA02946         86 RIVAMLLTHGADPNACDKQHKTP--------LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVF  156 (446)
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCH--------HHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHH
Confidence            34555565 89999999999999        799988764  7899999999999995 6899999997 6678999999


Q ss_pred             HHHHhcCCCcCccCCCCch-HHHHHh----hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           83 RMLLESGAICSEHTFDGDR-CHYAAL----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        83 ~~Ll~~ga~~~~~~~~g~t-~~~aa~----~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.|+++|++++..|..|+| +|+++.    +.+++++|++.|++++.  ++..|.||||+|+..+.
T Consensus       157 ~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~--~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        157 KKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK--PDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             HHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCC
Confidence            9999999999999999999 566655    46899999999999888  78899999999997664

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.51  E-value=7.8e-14  Score=150.65  Aligned_cols=168  Identities=14%  Similarity=0.048  Sum_probs=77.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCC-CccCCCChhHHHHHHHh--CCHHHHHHHHhc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNV-NARDQWDSVALYYACLA--GHLDAARMLLES   88 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~   88 (583)
                      |+|+|.+|..|+||        ||.|+..   |+.+++++|+++|+++ +.+|..|+||||+|+..  ++.+++++|+++
T Consensus        98 Gadin~~d~~g~tp--------L~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         98 GADINLKTFNGVSP--------IVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             CCCCCCCCCCCCcH--------HHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            44555555555555        3433322   3445555555555555 44455555555544432  344555555555


Q ss_pred             CCCcCc-cCCCCchH-HHHHh------hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhccccccc
Q 007949           89 GAICSE-HTFDGDRC-HYAAL------NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTS  160 (583)
Q Consensus        89 ga~~~~-~~~~g~t~-~~aa~------~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~  160 (583)
                      |++++. .+..|.|| |.++.      +.+++++|++.|++++.  ++..|.|++|.++..+.......   ..+..++.
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~--~~~~~~t~l~~~~~~~~~~~~~~---~~il~~l~  244 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET--NNNGSESVLESFLDNNKILSKKE---FKVLNFIL  244 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc--cCCccccHHHHHHHhchhhcccc---hHHHHHHH
Confidence            555544 34444442 32222      33445555555554443  23334444444333221100000   00011111


Q ss_pred             CCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCC
Q 007949          161 NGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETD  203 (583)
Q Consensus       161 ~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~  203 (583)
                      .+        .||..+-.....|.|.++-....+.++.++..+
T Consensus       245 ~~--------advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G  279 (494)
T PHA02989        245 KY--------IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG  279 (494)
T ss_pred             hC--------CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC
Confidence            11        255555555667888888777777777777654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.51  E-value=7.9e-14  Score=147.42  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=100.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch
Q 007949           22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR  101 (583)
Q Consensus        22 d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  101 (583)
                      +..|+||        ||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        99 ~~~g~tp--------L~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T  170 (413)
T PHA02875         99 YKDGMTP--------LHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT  170 (413)
T ss_pred             cCCCCCH--------HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Confidence            4455666        89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHh--hHHHHHHHHhCCCCCCCCCCcccC-Cccchhcccccc
Q 007949          102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA-LRDTFLGCGANR  143 (583)
Q Consensus       102 -~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~-~t~L~~A~~~~~  143 (583)
                       +|+|+.  +.+++++|+++|++++.  .+..| .||+|+|+..++
T Consensus       171 pL~~A~~~g~~eiv~~Ll~~ga~~n~--~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        171 PLIIAMAKGDIAICKMLLDSGANIDY--FGKNGCVAALCYAIENNK  214 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCc--CCCCCCchHHHHHHHcCC
Confidence             577776  89999999999999887  45555 588998998776

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.51  E-value=5.5e-14  Score=153.87  Aligned_cols=124  Identities=12%  Similarity=0.103  Sum_probs=104.9

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCChhHHHHHH---------
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGD--VDRLRYILESGVNVNARDQWDSVALYYAC---------   74 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~--~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~---------   74 (583)
                      .+++..++ |+++|.+|..|+||        ||+|+..|+  .++++.|+++|+++|.+|..|+||||+|+         
T Consensus       193 eIVklLLe~GADVN~kD~~G~TP--------LH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~E  264 (764)
T PHA02716        193 DILEWLCNNGVNVNLQNNHLITP--------LHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPE  264 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCH--------HHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHH
Confidence            35666666 99999999999999        799999995  48999999999999999999999999753         


Q ss_pred             ----------------------------HhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh----hHHHHHHHHhCCCC
Q 007949           75 ----------------------------LAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL----NLKVRKLLKAYEAR  121 (583)
Q Consensus        75 ----------------------------~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~----~~~i~~~L~~~~~~  121 (583)
                                                  ..|+.+++++|+++|++++.+|..|+| +|+++.    +.+++++|+++|++
T Consensus       265 IvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD  344 (764)
T PHA02716        265 ITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND  344 (764)
T ss_pred             HHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC
Confidence                                        347788889999999999999999988 466543    56889999999988


Q ss_pred             CCCCCCcccCCccchhccc
Q 007949          122 PPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus       122 ~~~~~~~~~~~t~L~~A~~  140 (583)
                      ++.  ++..|.||||.|+.
T Consensus       345 IN~--kD~~G~TPLH~A~~  361 (764)
T PHA02716        345 LNE--PDNIGNTVLHTYLS  361 (764)
T ss_pred             Ccc--CCCCCCCHHHHHHH
Confidence            777  68889999998763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.50  E-value=9.1e-14  Score=158.52  Aligned_cols=125  Identities=21%  Similarity=0.203  Sum_probs=109.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      -.++..+. |+|+|..|..|+||        ||+||..|+.++++.|+++|+++|.+|.+|+||||+|+..||.+++++|
T Consensus       539 ~~l~~Ll~~G~d~n~~d~~G~Tp--------Lh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L  610 (823)
T PLN03192        539 ALLEELLKAKLDPDIGDSKGRTP--------LHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRIL  610 (823)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCH--------HHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            34555565 89999999999999        7999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++.++..+.  ..|.+ +|.|+.  +.++++.|+++|++++.  ++..|.||||.|+..++
T Consensus       611 ~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~--~d~~G~TpLh~A~~~g~  667 (823)
T PLN03192        611 YHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDS--EDHQGATALQVAMAEDH  667 (823)
T ss_pred             HhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCc
Confidence            988776553  23445 788877  89999999999999887  78999999999998776

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.49  E-value=5.7e-14  Score=121.31  Aligned_cols=116  Identities=22%  Similarity=0.153  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      .-+|.+|.+|.||        ||-|+-.||.++++.|+..|++++++...||||||-||..++.+++-.|+.+|+|+|+.
T Consensus        88 n~vNtrD~D~YTp--------LHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~  159 (228)
T KOG0512|consen   88 NHVNTRDEDEYTP--------LHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQ  159 (228)
T ss_pred             ccccccccccccH--------HHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccc
Confidence            4599999999999        79999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchH-HHHHh---hHHHHHHHH-hCCCCCCCCCCcccCCccchhcccc
Q 007949           96 TFDGDRC-HYAAL---NLKVRKLLK-AYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus        96 ~~~g~t~-~~aa~---~~~i~~~L~-~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      .....|| |.+|.   ....+.+|+ ..+..+..  .+..+.||+..|-..
T Consensus       160 t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~--~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  160 TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGL--KNNLEETAFDIARRT  208 (228)
T ss_pred             ccccchhhHHhhcccchHHHHHHHhhccccChhh--hcCccchHHHHHHHh
Confidence            8877885 66665   333445544 44445444  677888999887643

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.49  E-value=4.9e-14  Score=129.84  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             CcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCc--ccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          171 PDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRN--EIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       171 ~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~--~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      .|+-+......||+||++|++|||+|+.+.+.+-....  .-.|..-+++.++|+++|+|+|||+.
T Consensus       131 ~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEf  196 (401)
T KOG2838|consen  131 GDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEF  196 (401)
T ss_pred             ccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhccc
Confidence            48888888899999999999999999998876432221  22355568999999999999999997

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.49  E-value=1.5e-13  Score=111.50  Aligned_cols=89  Identities=22%  Similarity=0.496  Sum_probs=82.4

Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhHh
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVC  251 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~a~~~  251 (583)
                      ||++.++|+.+++||.+|+++|+||+.||.+++.+.....+.++++++.+|+.+++|+|++.+.++..++..++.+|..+
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~   80 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL   80 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999998887777888889999999999999999999999999999999999999


Q ss_pred             chHHHHHHH
Q 007949          252 KCESLQRII  260 (583)
Q Consensus       252 ~~~~l~~~l  260 (583)
                      +++.+.+.+
T Consensus        81 ~~~~l~~~c   89 (90)
T smart00225       81 QIPGLVELC   89 (90)
T ss_pred             CcHHHHhhh
Confidence            888877654

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02798 ankyrin-like protein; Provisional

Probab=99.48  E-value=1.2e-13  Score=149.10  Aligned_cols=128  Identities=17%  Similarity=0.153  Sum_probs=105.3

Q ss_pred             cchhhhcccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHh-----CCHHH
Q 007949            7 STIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA-----GHLDA   81 (583)
Q Consensus         7 ~~~~~~~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-----g~~~~   81 (583)
                      -++...+++.++|.. ..|.|++      +.+.+...++.+++++|+++|+++|.+|..|.||||+|+..     ++.++
T Consensus        19 ~~v~~ll~~~~~~~~-~~~~~~~------~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i   91 (489)
T PHA02798         19 STVKLLIKSCNPNEI-VNEYSIF------QKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI   91 (489)
T ss_pred             HHHHHHHhcCChhhh-cccchHH------HHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence            566677776666665 3466662      12344446689999999999999999999999999998764     67899


Q ss_pred             HHHHHhcCCCcCccCCCCchH-HHHHh-----hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           82 ARMLLESGAICSEHTFDGDRC-HYAAL-----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        82 v~~Ll~~ga~~~~~~~~g~t~-~~aa~-----~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|+++|++++..|..|.|| |+++.     +.+++++|+++|++++.  .+..|.||||+|+..++
T Consensus        92 v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798         92 VKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL--LDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             HHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc--cCCCCCcHHHHHHHcCC
Confidence            999999999999999999995 66765     57899999999999887  78999999999998775

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.48  E-value=1.3e-13  Score=121.29  Aligned_cols=126  Identities=21%  Similarity=0.349  Sum_probs=105.1

Q ss_pred             ccccCCCCCCCCCCCcEEEEECC---EeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          157 GVTSNGASNSDSFPPDVVFYVQG---RPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       157 ~l~~~~~~~~~~~~~Dv~~~v~~---~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      +++....|+      |++|+++|   +.+||||.||++||++++  |..+-.|.. ....+.++++++|...++|+||++
T Consensus        59 dL~Ek~qfS------Dlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~dDad~Ea~~t~iRWIYTDE  129 (280)
T KOG4591|consen   59 DLLEKEQFS------DLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLDDADFEAFHTAIRWIYTDE  129 (280)
T ss_pred             HHhhccccc------ceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcccccCHHHHHHhheeeeccc
Confidence            566666666      99999984   789999999999999886  333323333 345567899999999999999999


Q ss_pred             ccCChhh--HHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          234 LEIAVDD--MEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       234 ~~i~~~~--~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      +++..++  ..++.++|..++++.|++.|.          ||+.++.+|+..+...|...|...|..++.
T Consensus       130 idfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~  199 (280)
T KOG4591|consen  130 IDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWD  199 (280)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence            9886664  568899999999999988865          899999999999999999999999998875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.47  E-value=1.8e-13  Score=140.38  Aligned_cols=126  Identities=10%  Similarity=0.021  Sum_probs=108.6

Q ss_pred             ccchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCC-Ccc-----CCCChhHHHHHHHhCC
Q 007949            6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNV-NAR-----DQWDSVALYYACLAGH   78 (583)
Q Consensus         6 ~~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~~~-----d~~g~t~L~~A~~~g~   78 (583)
                      .-+++..++ |+|+|.++  +.||        +|+|+..|+.+++++|+++|++. +..     +..|.|++|.|+..++
T Consensus       131 ~eiV~~LI~~GADIn~~~--~~t~--------lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~  200 (437)
T PHA02795        131 IDIVDFMVDHGAVIYKIE--CLNA--------YFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV  200 (437)
T ss_pred             HHHHHHHHHCCCCCCCCC--CCCH--------HHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH
Confidence            356677777 99999854  5788        79999999999999999999753 322     2457899999999999


Q ss_pred             HHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           79 LDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        79 ~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+++++|+++|++++.+|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||.|+..+.
T Consensus       201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~--~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA--VMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCC
Confidence            99999999999999999999998 577777  89999999999999988  78899999999998775

>PHA02917 ankyrin-like protein; Provisional

Probab=99.46  E-value=1.9e-13  Score=150.35  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=111.3

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCC---CC------------------------cHHHHHHHHcCCHHHHHHHHHcCCC
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKK---VP------------------------NGDVFEASRAGDVDRLRYILESGVN   58 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~---~~------------------------~~~L~~A~~~g~~~~v~~Ll~~g~~   58 (583)
                      -+++..++ |++++.+|..|+|||+.   .+                        ...+|+|+..|+.+++++|+++|++
T Consensus        49 ~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gad  128 (661)
T PHA02917         49 EVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFD  128 (661)
T ss_pred             HHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCC
Confidence            34455555 99999999999999861   01                        0334567888899999999999999


Q ss_pred             CCccCCCChhHHHHHH--HhCCHHHHHHHHhcCCCcCccCCC---C-----------ch-HHHHHh-------------h
Q 007949           59 VNARDQWDSVALYYAC--LAGHLDAARMLLESGAICSEHTFD---G-----------DR-CHYAAL-------------N  108 (583)
Q Consensus        59 ~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~~~~~---g-----------~t-~~~aa~-------------~  108 (583)
                      +|.+|..|+||||.|+  ..|+.+++++|+++||+++..+..   |           .| +|+++.             +
T Consensus       129 in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  208 (661)
T PHA02917        129 LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVR  208 (661)
T ss_pred             CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCc
Confidence            9999999999999643  578999999999999999865532   3           36 688764             5


Q ss_pred             HHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949          109 LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus       109 ~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      .+++++|+++|++++.  ++..|.||||+|+.+++.
T Consensus       209 ~eiv~~Li~~Gadvn~--~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        209 PEVVKCLINHGIKPSS--IDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             HHHHHHHHHCCCCccc--CCCCCCcHHHHHHHcCCC
Confidence            6899999999999888  789999999999988874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=1.2e-13  Score=136.82  Aligned_cols=114  Identities=21%  Similarity=0.294  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCC
Q 007949           20 ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG   99 (583)
Q Consensus        20 ~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   99 (583)
                      ..+-.|.+|        |--|+..||+++|+.|+.+|+++|.......|||--||.-||.+++++|+++|+|+++.|+.|
T Consensus        79 ge~Iegapp--------LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhG  150 (615)
T KOG0508|consen   79 GETIEGAPP--------LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHG  150 (615)
T ss_pred             CcccCCCch--------hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCC
Confidence            334567777        567778899999999999999999988888899999999999999999999999999999999


Q ss_pred             ch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          100 DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       100 ~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .| ++.+|.  +.+|+++|++.|++++.  ++..|+|+||.+.+.++
T Consensus       151 hTcLmIa~ykGh~~I~qyLle~gADvn~--ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  151 HTCLMIACYKGHVDIAQYLLEQGADVNA--KSYKGNTALHDCAESGS  195 (615)
T ss_pred             CeeEEeeeccCchHHHHHHHHhCCCcch--hcccCchHHHhhhhccc
Confidence            99 677777  99999999999999988  89999999999998888

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.44  E-value=3.7e-13  Score=151.29  Aligned_cols=106  Identities=25%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh---hH
Q 007949           35 GDVFEASRA-GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL---NL  109 (583)
Q Consensus        35 ~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~---~~  109 (583)
                      ++||+|+.. ++.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.   ..
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~  422 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY  422 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHH
Confidence            347777764 4677777888888888888888888888888888888888888888888888888887 576665   35


Q ss_pred             HHHHHHHhCCCCCCCCCCcccCCccchhccccc
Q 007949          110 KVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN  142 (583)
Q Consensus       110 ~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~  142 (583)
                      .++++|++.|++++.  ++..|.||||+|+..+
T Consensus       423 ~~vk~Ll~~gadin~--~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        423 MSVKTLIDRGANVNS--KNKDLSTPLHYACKKN  453 (682)
T ss_pred             HHHHHHHhCCCCCCc--CCCCCChHHHHHHHhC
Confidence            567888888888777  6888899999988755

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.44  E-value=5e-13  Score=150.28  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=106.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCC-HHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH-LDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~   93 (583)
                      |+++|.+|..|+||        ||+|+..|+.++++.|+++|++++..+..|.||||+|+..++ ..++++|+++|++++
T Consensus       365 gadin~~d~~G~Tp--------Lh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin  436 (682)
T PHA02876        365 GANVNARDYCDKTP--------IHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN  436 (682)
T ss_pred             CCCCccCCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            77788888888888        899999999999999999999999999999999999987666 567999999999999


Q ss_pred             ccCCCCch-HHHHHh---hHHHHHHHHhCCCCCCCCCCcccCCccchhccccc
Q 007949           94 EHTFDGDR-CHYAAL---NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN  142 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~---~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~  142 (583)
                      .+|..|.| +|+|+.   +.+++++|+++|++++.  .+..|.||+++|+..+
T Consensus       437 ~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~--~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        437 SKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA--INIQNQYPLLIALEYH  487 (682)
T ss_pred             cCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHhC
Confidence            99999999 577776   47999999999999888  7899999999998643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.43  E-value=4.8e-13  Score=144.53  Aligned_cols=127  Identities=11%  Similarity=0.043  Sum_probs=100.7

Q ss_pred             cchhhhcc-cCCC-CCCCCCCCCCCCCCCcHHHHHHHHc--CCHHHHHHHHHcCCCCCc-cCCCChhHHHHHHHhC----
Q 007949            7 STIDAELD-EIDL-DASDFSSSVPLKKVPNGDVFEASRA--GDVDRLRYILESGVNVNA-RDQWDSVALYYACLAG----   77 (583)
Q Consensus         7 ~~~~~~~~-~~di-n~~d~~g~tpl~~~~~~~L~~A~~~--g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g----   77 (583)
                      .++...++ |+|+ +.+|..|+||        ||+|+..  ++.++++.|+++|++++. .+..|.||||.|+..+    
T Consensus       125 eiv~~Ll~~Gadin~~~d~~g~tp--------Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~  196 (494)
T PHA02989        125 DMLRFLLSKGINVNDVKNSRGYNL--------LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVI  196 (494)
T ss_pred             HHHHHHHHCCCCcccccCCCCCCH--------HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccc
Confidence            34555666 9999 8999999999        7998764  689999999999999998 6789999999987754    


Q ss_pred             CHHHHHHHHhcCCCcCccC--------------------------------------CCCch-HHHHHh--hHHHHHHHH
Q 007949           78 HLDAARMLLESGAICSEHT--------------------------------------FDGDR-CHYAAL--NLKVRKLLK  116 (583)
Q Consensus        78 ~~~~v~~Ll~~ga~~~~~~--------------------------------------~~g~t-~~~aa~--~~~i~~~L~  116 (583)
                      +.+++++|++.|++++..+                                      ..|.| +|+|+.  +.+++++|+
T Consensus       197 ~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL  276 (494)
T PHA02989        197 SIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLL  276 (494)
T ss_pred             cHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHH
Confidence            8999999999998876554                                      44666 455555  677788888


Q ss_pred             hCCCCCCCCCCcccCCccchhcccccc
Q 007949          117 AYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       117 ~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.|++++.  ++..|.||||+|+..++
T Consensus       277 ~~Gadin~--~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        277 KLGDDIYN--VSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HcCCCccc--cCCCCCCHHHHHHHcCC
Confidence            88877776  57777888888876655

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=3.1e-13  Score=142.31  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=105.5

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh-cC-CCcCcc
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE-SG-AICSEH   95 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g-a~~~~~   95 (583)
                      +|-.|.+|-||        ||+||+.|+.+.+..|+..|++++.++.++.||||.|+++|+.++++.|++ .| ...+..
T Consensus       266 v~~~d~dg~tp--------LH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~  337 (929)
T KOG0510|consen  266 VNDEDNDGCTP--------LHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNES  337 (929)
T ss_pred             hhcccccCCch--------HHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccc
Confidence            67789999999        799999999999999999999999999999999999999999999999998 54 668888


Q ss_pred             CCCCchH-HHHHh--hHHHHHHHHhCCCCCC-CCCCcccCCccchhcccccc
Q 007949           96 TFDGDRC-HYAAL--NLKVRKLLKAYEARPP-PLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~-~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |..|.|| |.++.  +..++++|+++|+... ....+.+|.||||+|+..|+
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc
Confidence            9999995 66666  8999999999999765 21248899999999998777

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.42  E-value=1.7e-12  Score=105.46  Aligned_cols=84  Identities=35%  Similarity=0.546  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~  113 (583)
                      ||+||..|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.++..|+| +|+|+.  +.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6999999999999999999988876    889999999999999999999999999999999999 577777  899999


Q ss_pred             HHHhCCCCCCC
Q 007949          114 LLKAYEARPPP  124 (583)
Q Consensus       114 ~L~~~~~~~~~  124 (583)
                      +|+++|++++.
T Consensus        77 ~Ll~~g~~~~~   87 (89)
T PF12796_consen   77 LLLEHGADVNI   87 (89)
T ss_dssp             HHHHTTT-TTS
T ss_pred             HHHHcCCCCCC
Confidence            99999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.41  E-value=5.1e-13  Score=108.41  Aligned_cols=90  Identities=36%  Similarity=0.508  Sum_probs=81.6

Q ss_pred             cEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHHhH
Q 007949          344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQA  423 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~~~  423 (583)
                      |+++.++++.|++||.+|+++|+||+.||.+  +|.++       ....+.++++++.+|+.+++|+|++.+ .++..++
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~--~~~~~-------~~~~i~l~~~~~~~f~~~l~~ly~~~~-~~~~~~~   70 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSG--DFKES-------KKSEIYLDDVSPEDFRALLEFLYTGKL-DLPEENV   70 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcC--CCccC-------CCCEEEecCCCHHHHHHHHHeecCcee-ecCHHHH
Confidence            6889999999999999999999999999997  55543       345789999999999999999999999 7888899


Q ss_pred             HHHHHHHhccCchHHHHHHH
Q 007949          424 EEMFDAASRYLLFPLKRAVA  443 (583)
Q Consensus       424 ~~ll~~A~~~~~~~l~~~c~  443 (583)
                      .+++.+|++|+++.|++.|+
T Consensus        71 ~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       71 EELLELADYLQIPGLVELCE   90 (90)
T ss_pred             HHHHHHHHHHCcHHHHhhhC
Confidence            99999999999999999884

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=9.4e-13  Score=138.69  Aligned_cols=183  Identities=16%  Similarity=0.182  Sum_probs=141.7

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      |+.++. |++++..|..+.+|        +|+|+..|++++++.|+++|+|+|..|..|.||||+||..++.+..+.|++
T Consensus       104 i~~Lls~gad~~~~n~~~~ap--------lh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~  175 (929)
T KOG0510|consen  104 IQVLLSYGADTPLRNLNKNAP--------LHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELIN  175 (929)
T ss_pred             HHHHHhcCCCCChhhhhccCc--------hhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHh
Confidence            444454 89999999999999        799999999999999999999999999999999999999999998899999


Q ss_pred             cCCCcCccCCCCchH-HHHHh--hHHHHHHHHh-----CCCCCCCCCCcccCCccchhccccccc-----cchhhhh---
Q 007949           88 SGAICSEHTFDGDRC-HYAAL--NLKVRKLLKA-----YEARPPPLGPLQAALRDTFLGCGANRQ-----FLEEAEV---  151 (583)
Q Consensus        88 ~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~-----~~~~~~~~~~~~~~~t~L~~A~~~~~~-----~l~~~~~---  151 (583)
                      .|+++-..|.+|.++ |.+|.  ..+..++.+.     .+..++.  -+..+.||||+|+++++.     .|+....   
T Consensus       176 ~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~--~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~  253 (929)
T KOG0510|consen  176 KGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINF--DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIAD  253 (929)
T ss_pred             cCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccc--ccCCCCcchhhhhhcCCHHHHHHHHhCccccch
Confidence            999999999999985 88888  6777777776     4444554  567888999999988872     1221111   


Q ss_pred             -----hhcccccccCCCC--CCC-----------------CCCCcEEEEECCEeEehhHHHHhhccHHHHHhhc
Q 007949          152 -----VLGISGVTSNGAS--NSD-----------------SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE  201 (583)
Q Consensus       152 -----~~~~~~l~~~~~~--~~~-----------------~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~  201 (583)
                           ......+..+...  +..                 +.+.|+..+-.++.-|.|.+....|-.-.+.++.
T Consensus       254 ~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  254 VQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             hhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence                 1111122211111  100                 5677999998999999999999999888999997

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.40  E-value=2.7e-13  Score=122.51  Aligned_cols=115  Identities=15%  Similarity=0.121  Sum_probs=92.6

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCChhHHHHHHHhCCHH---HHHHHH
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV--N-----VNARDQWDSVALYYACLAGHLD---AARMLL   86 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~d~~g~t~L~~A~~~g~~~---~v~~Ll   86 (583)
                      ..+..|..|.||        ||+||..|+..  ..+...+.  +     ++.+|..|.||||+|+..|+.+   ++++|+
T Consensus         9 ~~~~~d~~g~tp--------Lh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll   78 (154)
T PHA02736          9 FASEPDIEGENI--------LHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM   78 (154)
T ss_pred             HHHhcCCCCCCH--------HHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH
Confidence            356678889999        89999999843  33332222  2     3456889999999999999874   688999


Q ss_pred             hcCCCcCccC-CCCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHT-FDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~-~~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++.++ ..|.| +|+|+.  +.+++++|+. .|++++.  .+..|.||||+|+..++
T Consensus        79 ~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~--~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         79 EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI--LNYAFKTPYYVACERHD  138 (154)
T ss_pred             HcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc--ccCCCCCHHHHHHHcCC
Confidence            9999999998 48998 577777  8999999997 4888877  78899999999998766

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.38  E-value=1.4e-12  Score=100.78  Aligned_cols=92  Identities=25%  Similarity=0.431  Sum_probs=79.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |.++|..- .|++|        ||||+-+|..+++++|+..|++++.+|++|.|||.-|+..||.+||++|+..||+-..
T Consensus        25 g~nVn~~~-ggR~p--------lhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   25 GLNVNEIY-GGRTP--------LHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             cccHHHHh-CCccc--------chHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccce
Confidence            45666543 78999        7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHhhHHHHHHH
Q 007949           95 HTFDGDRCHYAALNLKVRKLL  115 (583)
Q Consensus        95 ~~~~g~t~~~aa~~~~i~~~L  115 (583)
                      ...+|.++..++...+|..+|
T Consensus        96 ~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   96 HAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             eCCCchhHHhhccHHHHHHHh
Confidence            888998888877777776655

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.37  E-value=1.2e-12  Score=146.40  Aligned_cols=127  Identities=23%  Similarity=0.194  Sum_probs=113.7

Q ss_pred             cCCCCCCCCCCCCCCC-------------------------CCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhH
Q 007949           15 EIDLDASDFSSSVPLK-------------------------KVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVA   69 (583)
Q Consensus        15 ~~din~~d~~g~tpl~-------------------------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~   69 (583)
                      |.++|....+|.|||+                         +.+.+.+|.|...+++.+++.++.+|++++.++.+|+||
T Consensus       464 g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~Tp  543 (1143)
T KOG4177|consen  464 GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTP  543 (1143)
T ss_pred             CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccch
Confidence            7888888888888875                         234556888888888888888888999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           70 LYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        70 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ||.||.+|+.++|++|+++|++++.+++.|+| +|.||.  +.+++.+|+++|++++.  .+..|.|||+.|...++
T Consensus       544 Lh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna--~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA--ADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc--ccccCcchhHHHHHhcc
Confidence            99999999999999999999999999999999 577777  89999999999999998  78999999999998777

>PHA02741 hypothetical protein; Provisional

Probab=99.37  E-value=1.9e-12  Score=118.84  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=90.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC----HHHHHHHHHcCCCCCccCC-CChhHHHHHHHhCCHHHHHHHHh-c
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGD----VDRLRYILESGVNVNARDQ-WDSVALYYACLAGHLDAARMLLE-S   88 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~----~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~   88 (583)
                      |+++|.+|..|+||        ||+|+..|+    .+++++|+..|+++|.++. .|+||||+|+..++.+++++|+. .
T Consensus        50 ga~in~~d~~g~T~--------Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~  121 (169)
T PHA02741         50 AAALNATDDAGQMC--------IHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQP  121 (169)
T ss_pred             hhhhhccCCCCCcH--------HHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            68899999999999        899999999    5889999999999999985 99999999999999999999997 5


Q ss_pred             CCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCC
Q 007949           89 GAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARP  122 (583)
Q Consensus        89 ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~  122 (583)
                      |++++..|..|.|| |.++.  +.+++++|+++++..
T Consensus       122 g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        122 GIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999995 55555  789999999877653

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.36  E-value=6.9e-12  Score=125.22  Aligned_cols=124  Identities=19%  Similarity=0.200  Sum_probs=104.6

Q ss_pred             CCCCcEEEEECC-----EeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHH
Q 007949          168 SFPPDVVFYVQG-----RPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDME  242 (583)
Q Consensus       168 ~~~~Dv~~~v~~-----~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~  242 (583)
                      +..+|+.|+|++     +++||||.+|+..|.+|.+||.++|.+....+|.+++|+|.+|..+|+|||++++.+..+++.
T Consensus       112 ~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi  191 (521)
T KOG2075|consen  112 ELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVI  191 (521)
T ss_pred             cccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHH
Confidence            334599999963     789999999999999999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHhHhchHHHHHHHH----------H-HHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          243 DLVKICKVCKCESLQRIIE----------K-ELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       243 ~ll~~a~~~~~~~l~~~l~----------~-~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      .++.+|++|-+..|.+.+-          | ++..-.-|..++-++|...|...+..++.
T Consensus       192 ~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~  251 (521)
T KOG2075|consen  192 TTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFE  251 (521)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHH
Confidence            9999997776666655543          2 23233337888889999999999877764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.36  E-value=3.1e-12  Score=140.91  Aligned_cols=174  Identities=11%  Similarity=-0.054  Sum_probs=121.2

Q ss_pred             ccCCCCCCCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhC-------------
Q 007949           14 DEIDLDASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLAG-------------   77 (583)
Q Consensus        14 ~~~din~~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-------------   77 (583)
                      +|.+++.+|..|+||        ||+||..   |+.++++.|++.|++++.++..|+||||+|+..|             
T Consensus        21 ~~~~~~~~d~~g~t~--------Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         21 DRDPNDTRNQFKNNA--------LHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             ccCcccccCCCCCcH--------HHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            688889999999999        7997555   8899999999999999999999999999887644             


Q ss_pred             ----------------------CHHHHHHHHhcCCCcCccCCCCchH-HHHH-h---hHHHHHHHHhCCCCCCCCC-Ccc
Q 007949           78 ----------------------HLDAARMLLESGAICSEHTFDGDRC-HYAA-L---NLKVRKLLKAYEARPPPLG-PLQ  129 (583)
Q Consensus        78 ----------------------~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa-~---~~~i~~~L~~~~~~~~~~~-~~~  129 (583)
                                            +.+++++|+++|++++.+|.+|.|| |.++ .   +.+++++|+++|++++... .+.
T Consensus        93 ~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~  172 (661)
T PHA02917         93 EATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDE  172 (661)
T ss_pred             hccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccc
Confidence                                  4567888899999999999999984 5333 2   7999999999999886521 112


Q ss_pred             cC-----------Cccchhccccccccchh--hhhhhcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhcc--H
Q 007949          130 AA-----------LRDTFLGCGANRQFLEE--AEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARS--V  194 (583)
Q Consensus       130 ~~-----------~t~L~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S--~  194 (583)
                      .|           .||||+|+..+......  .....++..++-+.       +.||...-.....|.|-++-...-  +
T Consensus       173 ~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-------Gadvn~~d~~G~TpLh~A~~~g~~~~e  245 (661)
T PHA02917        173 YGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-------GIKPSSIDKNYCTALQYYIKSSHIDID  245 (661)
T ss_pred             cccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-------CCCcccCCCCCCcHHHHHHHcCCCcHH
Confidence            23           59999998532100000  00001112222111       237766666666788877655442  4


Q ss_pred             HHHHhhcC
Q 007949          195 FFRRKFET  202 (583)
Q Consensus       195 ~f~~~~~~  202 (583)
                      ..+.++.+
T Consensus       246 ivk~Li~g  253 (661)
T PHA02917        246 IVKLLMKG  253 (661)
T ss_pred             HHHHHHhC
Confidence            66666653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.34  E-value=2e-12  Score=116.83  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHH---HHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHHHh-cCCCc
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVD---RLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLE-SGAIC   92 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~---~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~   92 (583)
                      ++.+|..|+||        ||+|+..|+.+   ++++|++.|++++.++ ..|+||||+|+..|+.+++++|+. .|+++
T Consensus        48 ~~~~d~~g~t~--------Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~  119 (154)
T PHA02736         48 VLEYNRHGKQC--------VHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM  119 (154)
T ss_pred             HHHhcCCCCEE--------EEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            34568899999        79999999874   6889999999999998 599999999999999999999997 59999


Q ss_pred             CccCCCCchH-HHHHh--hHHHHHHHHhCCCCCC
Q 007949           93 SEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPP  123 (583)
Q Consensus        93 ~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~  123 (583)
                      +..+..|.|| |+|+.  +.+++++|+.+|+++.
T Consensus       120 n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        120 EILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999994 66666  7899999999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.34  E-value=3.6e-12  Score=137.13  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC----HHHHHHHHHcCC--CCCccCCCChhHHHH---HHHh
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGD----VDRLRYILESGV--NVNARDQWDSVALYY---ACLA   76 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~----~~~v~~Ll~~g~--~~~~~d~~g~t~L~~---A~~~   76 (583)
                      -+++-.+. |+++|.. ..|+||        ||+|+..++    .++++.|+++|+  ++|.+|..|.||||.   |...
T Consensus       360 eIvelLIs~GAdIN~k-~~G~Tp--------LH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        360 PILRCMLDNGATMDKT-TDNNYP--------LHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             HHHHHHHHCCCCCCcC-CCCCcH--------HHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhc
Confidence            45566665 9999986 789999        799998875    899999999987  699999999999984   3323


Q ss_pred             C---------CHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcc-cCCccchhccc
Q 007949           77 G---------HLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQ-AALRDTFLGCG  140 (583)
Q Consensus        77 g---------~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~-~~~t~L~~A~~  140 (583)
                      +         ..+++++|+.+|++++.+|..|.| +|+|+.  +.+++++|+++|++++.  .+. .|.||||.|+.
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~--~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT--TSRSIINTAIQKSSY  505 (672)
T ss_pred             cccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC--CCCcCCcCHHHHHHH
Confidence            2         235699999999999999999999 577777  78999999999999888  564 58999999986

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.33  E-value=2e-12  Score=124.44  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCChhHHHHHHHhC-----CHHHHHHHHhcCC
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAG-----HLDAARMLLESGA   90 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g-----~~~~v~~Ll~~ga   90 (583)
                      -+|..|.+|.|+        ||||+..+|+++|+.||+.| ++++.++.-|+||+++|+...     +..+|..|... .
T Consensus       260 vVNlaDsNGNTA--------LHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-g  330 (452)
T KOG0514|consen  260 VVNLADSNGNTA--------LHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-G  330 (452)
T ss_pred             HhhhhcCCCCee--------eeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-c
Confidence            378899999999        79999999999999999976 788888888888877766432     34455555433 3


Q ss_pred             CcCcc-CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccccc
Q 007949           91 ICSEH-TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF  145 (583)
Q Consensus        91 ~~~~~-~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  145 (583)
                      |+|++ ...|+| +..|+.  +.++|+.|+..|+++++  ++.+|.|+|.+||++||..
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi--QDdDGSTALMCA~EHGhkE  387 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI--QDDDGSTALMCAAEHGHKE  387 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc--ccCCccHHHhhhhhhChHH
Confidence            44444 335666 344444  66677777777777777  5777777777777777743

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.33  E-value=2.4e-12  Score=143.82  Aligned_cols=118  Identities=31%  Similarity=0.394  Sum_probs=104.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |++++.++..|.||        ||.||.+|++.+|++|+++|++++.+|+.|+||||.||..|+.+|+.+|+++|+++|.
T Consensus       530 ga~v~~~~~r~~Tp--------Lh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  530 GANVDLRTGRGYTP--------LHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             CCceehhcccccch--------HHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            88999999999999        7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCC---CCCCcccCCccchhccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPP---PLGPLQAALRDTFLGCG  140 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~---~~~~~~~~~t~L~~A~~  140 (583)
                      .+.+|.| +|+++.  +.+++++|...+....   .......|.+|..++-+
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHH
Confidence            9999999 577776  8889999998887721   11145678888776553

>PHA02795 ankyrin-like protein; Provisional

Probab=99.32  E-value=5.1e-12  Score=129.80  Aligned_cols=154  Identities=10%  Similarity=-0.008  Sum_probs=116.9

Q ss_pred             hhhhcc-cCCCC------CCCCCCCCCCCCCCcHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCH
Q 007949            9 IDAELD-EIDLD------ASDFSSSVPLKKVPNGDVFEASR--AGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHL   79 (583)
Q Consensus         9 ~~~~~~-~~din------~~d~~g~tpl~~~~~~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   79 (583)
                      ++..+- |+++|      .++..++|+        ||.|+.  .|+.+++++|+.+|++++.++  +.||+|.|+..|+.
T Consensus        93 ~~~l~s~~~~~~~~~~~~~~~~~~~~~--------L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~~~  162 (437)
T PHA02795         93 ISALVSKNYMEDIFSIIIKNCNSVQDL--------LLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICKKES  162 (437)
T ss_pred             HHHHHhcccccchhhhhhhccccccHH--------HHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHcCcH
Confidence            333443 77777      778888999        799999  999999999999999999854  58999999999999


Q ss_pred             HHHHHHHhcCCCcCccC------CCCchH-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc-cchhh
Q 007949           80 DAARMLLESGAICSEHT------FDGDRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ-FLEEA  149 (583)
Q Consensus        80 ~~v~~Ll~~ga~~~~~~------~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~l~~~  149 (583)
                      +++++|+++|++..-..      ..|.++ |.++.  +.+++++|+++|++++.  ++..|.||||.|+..++. ..+- 
T Consensus       163 eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~--kD~~G~TpLh~Aa~~g~~eiVel-  239 (437)
T PHA02795        163 SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ--LDAGGRTLLYRAIYAGYIDLVSW-  239 (437)
T ss_pred             HHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc--CCCCCCCHHHHHHHcCCHHHHHH-
Confidence            99999999998543221      234454 44444  68999999999999988  799999999999988873 1111 


Q ss_pred             hhhhcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhh
Q 007949          150 EVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSA  191 (583)
Q Consensus       150 ~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a  191 (583)
                              |+..        ++|+..+......|.|.++...
T Consensus       240 --------LL~~--------GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        240 --------LLEN--------GANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             --------HHHC--------CCCCCCcCCCCCCHHHHHHHcC
Confidence                    2211        2366666666677888776543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.32  E-value=7.9e-12  Score=123.47  Aligned_cols=117  Identities=22%  Similarity=0.201  Sum_probs=94.8

Q ss_pred             cchhhhcc-cCCCCCC----CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHH
Q 007949            7 STIDAELD-EIDLDAS----DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLD   80 (583)
Q Consensus         7 ~~~~~~~~-~~din~~----d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~   80 (583)
                      -+++..+. |+|+|.+    +..|.||        ||+|+..|+.++++.|+++|+++|.++ ..|.||||+|+..|+.+
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~Tp--------Lh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~e  118 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNP--------LIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLK  118 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHH
Confidence            45566666 8999987    4689999        899999999999999999999999964 68999999999999999


Q ss_pred             HHHHHHhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhc
Q 007949           81 AARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLG  138 (583)
Q Consensus        81 ~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A  138 (583)
                      ++++|+..|++++.++..|.|| |+|+.  +..++.++.  |..     .+..+.+|.+.+
T Consensus       119 ivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~  172 (300)
T PHA02884        119 CLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE-----ISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc-----ccccccChhhhh
Confidence            9999999999999999999995 66655  555554443  322     234456666653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.32  E-value=3.1e-12  Score=129.53  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             hhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC
Q 007949           11 AELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG   89 (583)
Q Consensus        11 ~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   89 (583)
                      ..+. |+++|..+.+|.|+        ||.+|...+.++|++|+++|++||.+|..||||||-|+..||..++++|+.+|
T Consensus        58 ~ll~~ga~~~~~n~DglTa--------lhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~g  129 (527)
T KOG0505|consen   58 KLLNRGASPNLCNVDGLTA--------LHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHG  129 (527)
T ss_pred             HHhccCCCccccCCccchh--------HHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhh
Confidence            3444 78889999999999        79999999999999999999999999999999999999999999999999998


Q ss_pred             CCcCccCCC-----------------------------------------------------------Cch-HHHHHh--
Q 007949           90 AICSEHTFD-----------------------------------------------------------GDR-CHYAAL--  107 (583)
Q Consensus        90 a~~~~~~~~-----------------------------------------------------------g~t-~~~aa~--  107 (583)
                      +++...|..                                                           |.| +|.++.  
T Consensus       130 A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~G  209 (527)
T KOG0505|consen  130 ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANG  209 (527)
T ss_pred             hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhh
Confidence            865433322                                                           346 677766  


Q ss_pred             hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949          108 NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus       108 ~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      ..++..+|+..|.++..  ++.+|+||||.|...++.
T Consensus       210 y~e~~~lLl~ag~~~~~--~D~dgWtPlHAAA~Wg~~  244 (527)
T KOG0505|consen  210 YTEVAALLLQAGYSVNI--KDYDGWTPLHAAAHWGQE  244 (527)
T ss_pred             HHHHHHHHHHhccCccc--ccccCCCcccHHHHhhhH
Confidence            78889999999999988  799999999999877774

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.28  E-value=9.8e-12  Score=101.01  Aligned_cols=77  Identities=26%  Similarity=0.482  Sum_probs=65.7

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +++..+. +.+++.    |.||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        12 ~~~~ll~~~~~~~~----~~~~--------l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   79 (89)
T PF12796_consen   12 ILKFLLEKGADINL----GNTA--------LHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLL   79 (89)
T ss_dssp             HHHHHHHTTSTTTS----SSBH--------HHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHCcCCCCC----CCCH--------HHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444444 556655    8889        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccC
Q 007949           87 ESGAICSEHT   96 (583)
Q Consensus        87 ~~ga~~~~~~   96 (583)
                      ++|++++.+|
T Consensus        80 ~~g~~~~~~n   89 (89)
T PF12796_consen   80 EHGADVNIRN   89 (89)
T ss_dssp             HTTT-TTSS-
T ss_pred             HcCCCCCCcC
Confidence            9999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.26  E-value=1.7e-11  Score=110.23  Aligned_cols=117  Identities=17%  Similarity=0.125  Sum_probs=101.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |...|..+-.+|+|        +.+++-..+.+.+..+..  .-+|..|..|.|||.||+..||+.++++|++.||++++
T Consensus       119 ~~rgnevs~~p~s~--------~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~  188 (296)
T KOG0502|consen  119 GARGNEVSLMPWSP--------LSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA  188 (296)
T ss_pred             cccCCccccccCCh--------hhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh
Confidence            66778888888999        688988888877655443  34899999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..+...+ +..|+.  ..+||++|+..+.+++.  .+-+|.|||.+|+-+||
T Consensus       189 lgk~resALsLAt~ggytdiV~lLL~r~vdVNv--yDwNGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  189 LGKYRESALSLATRGGYTDIVELLLTREVDVNV--YDWNGGTPLLYAVRGNH  238 (296)
T ss_pred             hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce--eccCCCceeeeeecCCh
Confidence            8877777 455555  79999999999999999  78999999999998888

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.25  E-value=6.6e-11  Score=102.05  Aligned_cols=114  Identities=31%  Similarity=0.388  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCC
Q 007949           20 ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG   99 (583)
Q Consensus        20 ~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   99 (583)
                      .+|..|.||        ||+|+..|+.++++.|+..|.+.+..+..|.||+|+|+..+..+++++|+..|++++..+..|
T Consensus         2 ~~~~~g~t~--------l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   73 (126)
T cd00204           2 ARDEDGRTP--------LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG   73 (126)
T ss_pred             CcCcCCCCH--------HHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            356789999        899999999999999999999989999999999999999999999999999999999999889


Q ss_pred             chH-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          100 DRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       100 ~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .++ |+++.  +.+++++|+..+.+.+.  .+..|.||++.|...++
T Consensus        74 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~--~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          74 NTPLHLAARNGNLDVVKLLLKHGADVNA--RDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHhcCC
Confidence            985 66666  79999999999977776  67889999999986543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.23  E-value=3.5e-11  Score=129.64  Aligned_cols=119  Identities=18%  Similarity=0.143  Sum_probs=97.2

Q ss_pred             CCC-CCCCCCCCCCCCCCcHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCChhHHHHHHHhC--CHHHHHHHHhcCC
Q 007949           17 DLD-ASDFSSSVPLKKVPNGDVFEASRAG---DVDRLRYILESGVNVNARDQWDSVALYYACLAG--HLDAARMLLESGA   90 (583)
Q Consensus        17 din-~~d~~g~tpl~~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga   90 (583)
                      ++| .+|..|+||        ||+|+..|   +.+++++|+++|++++.+|..|+||||+|+..+  +.+++++|++.|+
T Consensus        32 ~in~~kd~~G~Ta--------Lh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~  103 (672)
T PHA02730         32 NLSKHIDRRGNNA--------LHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS  103 (672)
T ss_pred             chhhhcCCCCCcH--------HHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC
Confidence            677 889999999        79999997   599999999999999999999999999999977  7999999999965


Q ss_pred             --CcCccCCCCch-H-HHHHh---hHHHHHHHHh-CCCCCCCCCCc---ccCCccchhcccccc
Q 007949           91 --ICSEHTFDGDR-C-HYAAL---NLKVRKLLKA-YEARPPPLGPL---QAALRDTFLGCGANR  143 (583)
Q Consensus        91 --~~~~~~~~g~t-~-~~aa~---~~~i~~~L~~-~~~~~~~~~~~---~~~~t~L~~A~~~~~  143 (583)
                        +++..+..+.+ + .+++.   +.+++++|+. .+.+++.....   ..|.+|+.+|...++
T Consensus       104 ~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~  167 (672)
T PHA02730        104 NASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPR  167 (672)
T ss_pred             CCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCc
Confidence              45776755665 3 33332   7889999996 66776663111   378999999998777

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.21  E-value=5.6e-11  Score=135.80  Aligned_cols=121  Identities=16%  Similarity=0.121  Sum_probs=105.3

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      +.+...++ |+++|.+|.+|+||        ||+|+..|+.++++.|+..++..+.  ..|.++||+|+..|+.++++.|
T Consensus       572 ~~v~~Ll~~gadin~~d~~G~Tp--------L~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~L  641 (823)
T PLN03192        572 DCVLVLLKHACNVHIRDANGNTA--------LWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKEL  641 (823)
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCH--------HHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHH
Confidence            55556666 89999999999999        8999999999999999988765543  3577999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccC-Cccchhcc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA-LRDTFLGC  139 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~-~t~L~~A~  139 (583)
                      +++|++++..|.+|.| +|.|+.  +.+++++|+++|++++.  .+..| .||+.++.
T Consensus       642 l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~--~~~~g~~t~~~l~~  697 (823)
T PLN03192        642 LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK--ANTDDDFSPTELRE  697 (823)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHH
Confidence            9999999999999999 577776  89999999999999888  56666 88887764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.20  E-value=5.5e-11  Score=92.00  Aligned_cols=100  Identities=21%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHh---hHHHH
Q 007949           36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAAL---NLKVR  112 (583)
Q Consensus        36 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~---~~~i~  112 (583)
                      .+.|+..+|.++-|+..+..|.|+|..- .|++|||+|+-+|..+++++|+.-||+++.+|+.|-||+.+|.   +.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4789999999999999999998888766 8999999999999999999999999999999999999766666   99999


Q ss_pred             HHHHhCCCCCCCCCCcccCCccchhc
Q 007949          113 KLLKAYEARPPPLGPLQAALRDTFLG  138 (583)
Q Consensus       113 ~~L~~~~~~~~~~~~~~~~~t~L~~A  138 (583)
                      ++|+.+|++...  ..++|.+.+..+
T Consensus        84 klLL~~GAdrt~--~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTI--HAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccce--eCCCchhHHhhc
Confidence            999999999888  667777666543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=3.6e-11  Score=87.48  Aligned_cols=50  Identities=32%  Similarity=0.603  Sum_probs=42.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus         5 lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    5 LHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            89999999999999999999999999999999999999999999999986

...

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.16  E-value=6.1e-11  Score=114.33  Aligned_cols=126  Identities=25%  Similarity=0.259  Sum_probs=103.1

Q ss_pred             hhhhcc--cCCCCCCCCCCCCCCCCCCcHHHHHHHHc-----CCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHH
Q 007949            9 IDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRA-----GDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLD   80 (583)
Q Consensus         9 ~~~~~~--~~din~~d~~g~tpl~~~~~~~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~   80 (583)
                      ....||  -+++|..|+.|.||        +++|+..     .+..+|..|.+.| |+|++- ..|.|+|++|+.+|+.+
T Consensus       284 V~~LLDSgvC~VD~qNrAGYtp--------iMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d  354 (452)
T KOG0514|consen  284 VSILLDSGVCDVDQQNRAGYTP--------VMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVD  354 (452)
T ss_pred             HHHHhccCcccccccccccccH--------HHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHH
Confidence            344555  48899999999999        7888764     4677888888776 788875 57999999999999999


Q ss_pred             HHHHHHhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhC-CCCCCCCCCcccCCccchhcccccccc
Q 007949           81 AARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAY-EARPPPLGPLQAALRDTFLGCGANRQF  145 (583)
Q Consensus        81 ~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~  145 (583)
                      +++.|+..|||+|++|.+|-|+ ..||.  +.+|+++|+.. +++..+  .+.+|.|+|-.|-+.+|..
T Consensus       355 ~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL--tD~DgSTAl~IAleagh~e  421 (452)
T KOG0514|consen  355 MVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL--TDVDGSTALSIALEAGHRE  421 (452)
T ss_pred             HHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee--ecCCCchhhhhHHhcCchH
Confidence            9999999999999999999995 44444  89999998854 456666  7889999999999988843

>PHA02792 ankyrin-like protein; Provisional

Probab=99.16  E-value=1.1e-10  Score=124.39  Aligned_cols=122  Identities=14%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--hhHHHHHHHhCCH---H
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWD--SVALYYACLAGHL---D   80 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~---~   80 (583)
                      .+++..++ |++++ + ..+..+        ++.||..|+.+++++|+++|++++.+|..|  .||||+|+..+..   +
T Consensus       322 eiIK~LId~Ga~~~-r-~~~~n~--------~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~  391 (631)
T PHA02792        322 NVIKCMIDEGATLY-R-FKHINK--------YFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLS  391 (631)
T ss_pred             HHHHHHHHCCCccc-c-CCcchH--------HHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHH
Confidence            56677776 77764 1 123333        789999999999999999999999998774  6999998776654   3


Q ss_pred             HHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccc
Q 007949           81 AARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus        81 ~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      +++.|+++|++++.+|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+.
T Consensus       392 IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~--kD~~G~TpL~~A~~  452 (631)
T PHA02792        392 ILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI--TTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHH
Confidence            688899999999999999998 577776  89999999999999887  78999999999974

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.13  E-value=1.5e-10  Score=123.14  Aligned_cols=112  Identities=21%  Similarity=0.289  Sum_probs=99.8

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCcc---------CC--------------CChhHHHHHHHhCC
Q 007949           22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR---------DQ--------------WDSVALYYACLAGH   78 (583)
Q Consensus        22 d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------d~--------------~g~t~L~~A~~~g~   78 (583)
                      ...|.||        ||.|..+.+.++|+.|++.||||+++         |.              +|..||-+|+..++
T Consensus       181 eY~GqSa--------LHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq  252 (782)
T KOG3676|consen  181 EYYGQSA--------LHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQ  252 (782)
T ss_pred             hhcCcch--------HHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCC
Confidence            3568888        89999999999999999999998763         21              47899999999999


Q ss_pred             HHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCC--CCCCCCcccCCccchhcccccc
Q 007949           79 LDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEAR--PPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        79 ~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~--~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+++++|+++|||++.+|.+|+| +|.++.  ..++.++++.+|++  ..+  ++..|.|||.+|+.-++
T Consensus       253 ~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v--~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  253 PEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHV--RNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccc--cccCCCChHHHHHHhhh
Confidence            99999999999999999999999 777776  78899999999999  444  78999999999998777

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.12  E-value=7.2e-11  Score=86.38  Aligned_cols=54  Identities=33%  Similarity=0.498  Sum_probs=31.5

Q ss_pred             HHHcC-CCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHH
Q 007949           52 ILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYA  105 (583)
Q Consensus        52 Ll~~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~a  105 (583)
                      |+++| ++++.+|..|+||||+|+..|+.+++++|+..|++++.+|..|+||...
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence            56777 8899999999999999999999999999999999999999999996443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.12  E-value=1.3e-10  Score=131.91  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC--------------CCChhHHHHHHHhCCHHHHHHHHh
Q 007949           22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD--------------QWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus        22 d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      +..|.||        ||+||..|+.++++.|+++|++++.++              ..|+||||+|+..|+.+++++|++
T Consensus       125 ~~~G~Tp--------LhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~  196 (743)
T TIGR00870       125 FTPGITA--------LHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE  196 (743)
T ss_pred             cCCCCcH--------HHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc
Confidence            3468888        899999999999999999999998653              258999999999999999999999


Q ss_pred             cCCCcCccCCCCch-HHHHHhh-----------HHHHHHHHhCCCCCCC-----CCCcccCCccchhcccccccc
Q 007949           88 SGAICSEHTFDGDR-CHYAALN-----------LKVRKLLKAYEARPPP-----LGPLQAALRDTFLGCGANRQF  145 (583)
Q Consensus        88 ~ga~~~~~~~~g~t-~~~aa~~-----------~~i~~~L~~~~~~~~~-----~~~~~~~~t~L~~A~~~~~~~  145 (583)
                      +|+|++.+|..|+| +|.++..           ..+.++++..+.....     ...+..|.||||+|+..++.-
T Consensus       197 ~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       197 DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCcc
Confidence            99999999999999 5766663           2356667766655322     115778999999999888743

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.11  E-value=1.7e-10  Score=107.81  Aligned_cols=109  Identities=19%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +.+..+. |+-+|..+...-||        ||+|+..||.++|+.|+++.+++|+.+..|+|||||||..|.-.+++-|+
T Consensus        49 ivemll~rgarvn~tnmgddtp--------lhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli  120 (448)
T KOG0195|consen   49 IVEMLLSRGARVNSTNMGDDTP--------LHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLI  120 (448)
T ss_pred             HHHHHHhcccccccccCCCCcc--------hhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHH
Confidence            3455565 88999999988999        79999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCchHHHHHh---hHHHHHHHHhCCCCCCC
Q 007949           87 ESGAICSEHTFDGDRCHYAAL---NLKVRKLLKAYEARPPP  124 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t~~~aa~---~~~i~~~L~~~~~~~~~  124 (583)
                      ..|+.+++.++.|.||...|.   ...+.++..++|.+++.
T Consensus       121 ~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  121 SCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             hccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            999999999999999888776   45556666677877654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.11  E-value=1.5e-10  Score=131.51  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=97.1

Q ss_pred             cchhhhcc---cCCCCCCCCCCCCCCCCCCcHHHH-HHHHcCCHHHHHHHHHcCC-------------------------
Q 007949            7 STIDAELD---EIDLDASDFSSSVPLKKVPNGDVF-EASRAGDVDRLRYILESGV-------------------------   57 (583)
Q Consensus         7 ~~~~~~~~---~~din~~d~~g~tpl~~~~~~~L~-~A~~~g~~~~v~~Ll~~g~-------------------------   57 (583)
                      +++...++   +.++|..|..|+||        || .|+..++.++++.|+.+|+                         
T Consensus        31 ~~v~~lL~~~~~~~in~~d~~G~t~--------Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~  102 (743)
T TIGR00870        31 ASVYRDLEEPKKLNINCPDRLGRSA--------LFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILL  102 (743)
T ss_pred             HHHHHHhccccccCCCCcCccchhH--------HHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHH
Confidence            45555554   68899999999999        46 5666666666666665552                         


Q ss_pred             -------C------CCc----cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC--------------CCCch-HHHH
Q 007949           58 -------N------VNA----RDQWDSVALYYACLAGHLDAARMLLESGAICSEHT--------------FDGDR-CHYA  105 (583)
Q Consensus        58 -------~------~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~t-~~~a  105 (583)
                             +      ++.    .+..|.||||+|+..|+.+++++|+++|++++.++              ..|.+ +|.+
T Consensus       103 ~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~A  182 (743)
T TIGR00870       103 HLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAA  182 (743)
T ss_pred             HHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHH
Confidence                   0      001    12359999999999999999999999999998653              24677 5666


Q ss_pred             Hh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccc
Q 007949          106 AL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN  142 (583)
Q Consensus       106 a~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~  142 (583)
                      +.  +.+++++|+++|++++.  .+..|.||||+|+.++
T Consensus       183 a~~~~~~iv~lLl~~gadin~--~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       183 ACLGSPSIVALLSEDPADILT--ADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHhCCHHHHHHHhcCCcchhh--HhhhhhHHHHHHHhhh
Confidence            66  89999999999998777  7889999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.10  E-value=1.6e-10  Score=117.33  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=108.1

Q ss_pred             ccchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCcc----------------------
Q 007949            6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR----------------------   62 (583)
Q Consensus         6 ~~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------------------   62 (583)
                      +-.+...++ |++||..|..||||        +|.|+.+|+..++++|+..|+++...                      
T Consensus        86 ~e~v~~l~e~ga~Vn~~d~e~wtP--------lhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~  157 (527)
T KOG0505|consen   86 LEMVKFLVENGANVNAQDNEGWTP--------LHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLET  157 (527)
T ss_pred             HHHHHHHHHhcCCccccccccCCc--------chhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHH
Confidence            345666676 99999999999999        69999999999999999988643111                      


Q ss_pred             -------------------------------------CCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchH-HH
Q 007949           63 -------------------------------------DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HY  104 (583)
Q Consensus        63 -------------------------------------d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-~~  104 (583)
                                                           +..|.|+||.|+..|..+++++|+..|.+++++|.+|++| |.
T Consensus       158 ~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHA  237 (527)
T KOG0505|consen  158 EMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHA  237 (527)
T ss_pred             HHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccH
Confidence                                                 2247899999999999999999999999999999999995 66


Q ss_pred             HHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccc
Q 007949          105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus       105 aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      +|.  ..++.++|+.+|++.+.  ....|.||+.+|.+.
T Consensus       238 AA~Wg~~~~~elL~~~ga~~d~--~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  238 AAHWGQEDACELLVEHGADMDA--KTKMGETPLDVADEE  274 (527)
T ss_pred             HHHhhhHhHHHHHHHhhcccch--hhhcCCCCccchhhh
Confidence            666  78899999999999888  688999999987753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.08  E-value=1.1e-10  Score=85.32  Aligned_cols=51  Identities=31%  Similarity=0.485  Sum_probs=33.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHH
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYA   73 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   73 (583)
                      ..++|.+|..|.||        ||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~--------LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTP--------LHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--H--------HHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcH--------HHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            38899999999999        8999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.05  E-value=9.3e-10  Score=122.18  Aligned_cols=103  Identities=26%  Similarity=0.293  Sum_probs=90.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKV  111 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i  111 (583)
                      ..|+.|+..|+.+.++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+.  +.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            4588999999999999999999999999999999999999999999999999999999999999999 577766  8999


Q ss_pred             HHHHHhC-------CCCCCCCCCcccCCccchhcc
Q 007949          112 RKLLKAY-------EARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus       112 ~~~L~~~-------~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      +++|+.+       |++...  ....|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~--~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKP--DSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCc--cccCCCCccchhh
Confidence            9999998       666655  4566777765444

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.02  E-value=2.1e-10  Score=120.35  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT   96 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~   96 (583)
                      .+|..|.+|.|+        ||.||.+|+.++++.|+++.+-++.+|..|.+|||+|++.|+.++++.|+.++..+|+.+
T Consensus        41 s~n~qd~~gfTa--------lhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~  112 (854)
T KOG0507|consen   41 SHNLQDYSGFTL--------LHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN  112 (854)
T ss_pred             cccccCccchhH--------HHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc
Confidence            456667777777        799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           97 FDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        97 ~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..|.+ +|.+|.  +.+++.+|+.+|++...  .+..+.|++.+||+.++
T Consensus       113 ~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i--~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen  113 IENETPLHLAAQHGHLEVVFYLLKKNADPFI--RNNSKETVLDLASRFGR  160 (854)
T ss_pred             ccCcCccchhhhhcchHHHHHHHhcCCCccc--cCcccccHHHHHHHhhh
Confidence            99998 677777  89999999999999888  78999999999998877

>PHA02792 ankyrin-like protein; Provisional

Probab=99.02  E-value=9.6e-10  Score=117.40  Aligned_cols=109  Identities=16%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             cchhhhcc-cCCCCCCCCCC--CCCCCCCCcHHHHHHHHcCCH---HHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHH
Q 007949            7 STIDAELD-EIDLDASDFSS--SVPLKKVPNGDVFEASRAGDV---DRLRYILESGVNVNARDQWDSVALYYACLAGHLD   80 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g--~tpl~~~~~~~L~~A~~~g~~---~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~   80 (583)
                      -+++..+. |+|+|.+|..|  .||        ||.|+..+..   .+++.|+++|+++|.+|..|+||||+|+..++.+
T Consensus       353 eIVelLIs~GADIN~kD~~g~~~Tp--------Lh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~e  424 (631)
T PHA02792        353 KVVEYILKNGNVVVEDDDNIINIMP--------LFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVS  424 (631)
T ss_pred             HHHHHHHHcCCchhhhcCCCCChhH--------HHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHH
Confidence            45566665 99999999886  467        7887776654   3578889999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcCccCCCCchH-HHHHh------------hHHHHHHHHhCCCCCC
Q 007949           81 AARMLLESGAICSEHTFDGDRC-HYAAL------------NLKVRKLLKAYEARPP  123 (583)
Q Consensus        81 ~v~~Ll~~ga~~~~~~~~g~t~-~~aa~------------~~~i~~~L~~~~~~~~  123 (583)
                      ++++|+++|++++.++..|.|| |+|+.            ..+++++|+++++++.
T Consensus       425 ivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        425 LVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999995 55543            2567899999887654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.01  E-value=2.8e-09  Score=102.24  Aligned_cols=120  Identities=29%  Similarity=0.411  Sum_probs=105.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCC-----HHHHHHHHhcCC
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH-----LDAARMLLESGA   90 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga   90 (583)
                      ...+..+..+.++        +|.++..+...++..++..|++++.+|..|.||||+|+..|+     .++++.|++.|+
T Consensus        64 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~  135 (235)
T COG0666          64 RHLAARDLDGRLP--------LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA  135 (235)
T ss_pred             cccccCCccccCH--------HHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCC
Confidence            3344555567777        899999999999999999999999999999999999999999     999999999999


Q ss_pred             ---CcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccccc
Q 007949           91 ---ICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF  145 (583)
Q Consensus        91 ---~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  145 (583)
                         +.+..+..|.| +|+++.  +.+++.+|+..|+++..  .+..|.|+++.||..++..
T Consensus       136 ~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~--~~~~g~t~l~~a~~~~~~~  194 (235)
T COG0666         136 DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS--RNSYGVTALDPAAKNGRIE  194 (235)
T ss_pred             CCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc--cccCCCcchhhhcccchHH
Confidence               67777999999 577777  77899999999998888  6899999999999877743

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.01  E-value=4.9e-10  Score=117.72  Aligned_cols=130  Identities=19%  Similarity=0.138  Sum_probs=109.5

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++.-.++ .+-++..|..|.+|        ||+|++.|+.+++++++.++..+|+.+..|.||||+|+..||.+++.+|
T Consensus        63 ~is~llle~ea~ldl~d~kg~~p--------lhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~L  134 (854)
T KOG0507|consen   63 QISKLLLDYEALLDLCDTKGILP--------LHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYL  134 (854)
T ss_pred             HHHHHHhcchhhhhhhhccCcce--------EEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHH
Confidence            44444444 67788888999999        7999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchHHHHHh---hHHHHHHHHhCCCCCCC------CCCcccCCccchhccccccc
Q 007949           86 LESGAICSEHTFDGDRCHYAAL---NLKVRKLLKAYEARPPP------LGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~~~aa~---~~~i~~~L~~~~~~~~~------~~~~~~~~t~L~~A~~~~~~  144 (583)
                      +.+|+++-.+|.++.|+|.+|.   ..+++++|+...-....      ..+...+.+|+|+|..++|.
T Consensus       135 l~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~  202 (854)
T KOG0507|consen  135 LKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHV  202 (854)
T ss_pred             HhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchH
Confidence            9999999999999999998888   78889998875322111      11334578899999999983

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.99  E-value=1.1e-09  Score=115.60  Aligned_cols=122  Identities=22%  Similarity=0.341  Sum_probs=102.2

Q ss_pred             CCcEEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcC-CcccC-----ChhhHH
Q 007949          170 PPDVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS-DRLEI-----AVDDME  242 (583)
Q Consensus       170 ~~Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYt-g~~~i-----~~~~~~  242 (583)
                      ..|+.+.. +|+.++|||++|++|+.||..||..-|.|+....+..-.++.+.++.+|+|+|+ ++..+     ..+.+.
T Consensus       710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~  789 (1267)
T KOG0783|consen  710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF  789 (1267)
T ss_pred             ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence            34666665 778899999999999999999999999999887777767779999999999994 55432     334577


Q ss_pred             HHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          243 DLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       243 ~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      +++.+|+.+-+..|++.++          ++-.++.||..|++.+|...|..|++.|..
T Consensus       790 ~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~  848 (1267)
T KOG0783|consen  790 EILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIE  848 (1267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Confidence            8999998887888888876          567788899999999999999999999853

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.99  E-value=4.1e-09  Score=102.15  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             EeEehhHHHHhhccHHHHHhhcCCCCCCc----ccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhHhchH-
Q 007949          180 RPIEAHRVILSARSVFFRRKFETDWRYRN----EIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCE-  254 (583)
Q Consensus       180 ~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~----~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~a~~~~~~-  254 (583)
                      .++|||++++ .|+.||+.||.|++.|+.    .....++.....+.+.+++|+|++..++.++-..+++-+|....++ 
T Consensus       301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~  379 (516)
T KOG0511|consen  301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD  379 (516)
T ss_pred             ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence            4688888888 478888889988887743    2345677778889999999999999999999888888777544222 


Q ss_pred             -H-HHHH-----------HH--HHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 007949          255 -S-LQRI-----------IE--KELIHQKYAEYKALRDVDNSQKRFILQGS  290 (583)
Q Consensus       255 -~-l~~~-----------l~--~~l~~~~~a~~~~~~~l~~~~~~~i~~~~  290 (583)
                       . |+..           ++  +.+.+...+.......+...+..++..+.
T Consensus       380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl  430 (516)
T KOG0511|consen  380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHL  430 (516)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence             1 1111           11  35555556666666666666666665553

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.93  E-value=3e-09  Score=99.58  Aligned_cols=93  Identities=24%  Similarity=0.330  Sum_probs=80.7

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA-RDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      .+|.+|..|.++        |..|+-.|+.+.++.|++.|+|+|. ++..++||||+|+..|+.++.++|++.|+.....
T Consensus        37 ~vn~~D~sGMs~--------LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~v  108 (396)
T KOG1710|consen   37 QVNQRDPSGMSV--------LAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLV  108 (396)
T ss_pred             hhhccCCCcccH--------HHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccc
Confidence            389999999999        6889999999999999999999988 4578899999999999999999999999999999


Q ss_pred             CCCCchH-HHHHh--hHHHHHHHHh
Q 007949           96 TFDGDRC-HYAAL--NLKVRKLLKA  117 (583)
Q Consensus        96 ~~~g~t~-~~aa~--~~~i~~~L~~  117 (583)
                      |.-|+|+ -.||.  +.+.|.++-+
T Consensus       109 NsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  109 NSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999994 55555  7777776543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.86  E-value=1e-08  Score=98.36  Aligned_cols=97  Identities=29%  Similarity=0.371  Sum_probs=89.3

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC-----HHHHHHHHHcCC---CCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGD-----VDRLRYILESGV---NVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      |++++.+|..|.||        +|+|+..|+     .++++.|++.|+   ..+.+|..|+||||+|+..|+.++++.|+
T Consensus        96 ~~~~~~~~~~g~t~--------l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll  167 (235)
T COG0666          96 GADVNAKDADGDTP--------LHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL  167 (235)
T ss_pred             CCCcccccCCCCcH--------HHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHH
Confidence            88999999999999        799999999     999999999999   56667999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCC
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE  119 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~  119 (583)
                      +.|++++..+..|.| ++.++.  +..++..++..+
T Consensus       168 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         168 EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999 566666  788888888866

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=4.4e-09  Score=105.89  Aligned_cols=117  Identities=21%  Similarity=0.193  Sum_probs=93.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~  113 (583)
                      |.-|+..|-+++|+..+..-.|+...+..|.||||.|...||.+||++|+++|+++|..|.+||| +|.||.  +..+.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            77888999999999999887788888889999999999999999999999999999999999998 466666  777889


Q ss_pred             HHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhc
Q 007949          114 LLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLG  154 (583)
Q Consensus       114 ~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~  154 (583)
                      .|++.|+.+-.. +..++.|+...+-+....|-+=.++.+.
T Consensus       634 qLVe~GaavfAs-TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFAS-TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEee-ecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999876553 5677788876644444455444444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.83  E-value=6.9e-09  Score=115.28  Aligned_cols=89  Identities=22%  Similarity=0.292  Sum_probs=80.3

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      .++..+. |+++|.+|..|+||        ||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus        97 ~vk~LL~~Gadin~~d~~G~Tp--------Lh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll  168 (664)
T PTZ00322         97 GARILLTGGADPNCRDYDGRTP--------LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS  168 (664)
T ss_pred             HHHHHHHCCCCCCCcCCCCCcH--------HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            3444555 89999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hc-------CCCcCccCCCCchHHH
Q 007949           87 ES-------GAICSEHTFDGDRCHY  104 (583)
Q Consensus        87 ~~-------ga~~~~~~~~g~t~~~  104 (583)
                      .+       |++++..+..|.++..
T Consensus       169 ~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        169 RHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             hCCCcccccCCCCCccccCCCCccc
Confidence            98       8888888888876533

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=8.3e-09  Score=103.99  Aligned_cols=87  Identities=23%  Similarity=0.234  Sum_probs=75.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCC-CCchHHHHHh--
Q 007949           31 KVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF-DGDRCHYAAL--  107 (583)
Q Consensus        31 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~~~aa~--  107 (583)
                      .+|.+.||-|+..||.++|++|++.|+|+|+.|.+||||||.|+.+++..+.+.|++.|+-+-+... ++.|+..-|.  
T Consensus       581 dEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~  660 (752)
T KOG0515|consen  581 DEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM  660 (752)
T ss_pred             ccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchh
Confidence            5799999999999999999999999999999999999999999999999999999999987776654 5557655554  


Q ss_pred             ---hHHHHHHHHh
Q 007949          108 ---NLKVRKLLKA  117 (583)
Q Consensus       108 ---~~~i~~~L~~  117 (583)
                         ...+.++|-.
T Consensus       661 eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  661 EEGYDQCSQYLYG  673 (752)
T ss_pred             hhhHHHHHHHHHH
Confidence               5667777764

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=98.81  E-value=2.3e-09  Score=89.59  Aligned_cols=96  Identities=18%  Similarity=0.299  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCchhHHHHHhcCCCCCCCccccc-cCCCCCCccccCCCccchHHHHHH
Q 007949          458 LCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRT-TVPSAPGAIINVDQGNLLDDLREK  536 (583)
Q Consensus       458 ~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~~-~~~~~~~~~ee~d~~e~~~~~~~~  536 (583)
                      |+.++.+|..|++..|.+.|.+||..||..+..+++|.+|+.+       .+..+ .++++.+.+|    .+++ +++.+
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~-------~l~~iL~~~~l~v~~E----~~v~-~av~~   68 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFD-------QLIEILSSDDLNVSSE----DDVF-EAVLR   68 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HH-------HHHHHHHTSS--ECTC----CCHH-HHHHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHH-------HHHHHHhccccccccH----HHHH-HHHHH
Confidence            7899999999999999999999999999999999999988766       22222 4566666677    6777 89999


Q ss_pred             HHHHHhhhhhcchhhHHhHHHHHHHHHHHhhh
Q 007949          537 WLEAEAAELDKRDESALMFDKRLEMLMQVAKD  568 (583)
Q Consensus       537 Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (583)
                      |+++++..   |.+....+++.+|++..+.+.
T Consensus        69 W~~~~~~~---r~~~~~~Ll~~iR~~~l~~~~   97 (103)
T PF07707_consen   69 WLKHNPEN---REEHLKELLSCIRFPLLSPEE   97 (103)
T ss_dssp             HHHCTHHH---HTTTHHHHHCCCHHHCT-HHH
T ss_pred             HHHhCHHH---HHHHHHHHHHhCCcccCCHHH
Confidence            99999874   456778888889988776553

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.78  E-value=2e-08  Score=98.44  Aligned_cols=128  Identities=17%  Similarity=0.221  Sum_probs=111.6

Q ss_pred             ccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEE----EcCCCCHHHHHHHhhhhcCC
Q 007949          157 GVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRF----SREKLSYPALYGLIHFFYSD  232 (583)
Q Consensus       157 ~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i----~l~~v~~~~~~~lL~ylYtg  232 (583)
                      .+..++..+      ||++..=|.+...||.-| ..|+||++||.|.|+|+....|    +.+.|+..++..++.-+|.+
T Consensus        62 ~lf~q~enS------Dv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~d  134 (488)
T KOG4682|consen   62 NLFLQGENS------DVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRD  134 (488)
T ss_pred             HHHhcCCCc------ceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhh
Confidence            455567766      999999999999999999 5899999999999999866544    45579999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      ++.|..+.+..++.+|..++++.|.+.|.          +....+..+..|+...+.+.|..++..|+.
T Consensus       135 EveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~  203 (488)
T KOG4682|consen  135 EVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLM  203 (488)
T ss_pred             heeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhH
Confidence            99999999999999998888777777654          567888899999999999999999988865

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.77  E-value=5.1e-08  Score=83.77  Aligned_cols=100  Identities=34%  Similarity=0.509  Sum_probs=85.4

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +++..+. +.+++..+..|.+|        +|+|+..++.++++.|+..|++++..+..|.||+|+|+..++.+++++|+
T Consensus        22 ~i~~li~~~~~~~~~~~~g~~~--------l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~   93 (126)
T cd00204          22 VVKLLLENGADVNAKDNDGRTP--------LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLL   93 (126)
T ss_pred             HHHHHHHcCCCCCccCCCCCcH--------HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            3444444 56668889999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCchH-HHHHh--hHHHHHHH
Q 007949           87 ESGAICSEHTFDGDRC-HYAAL--NLKVRKLL  115 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L  115 (583)
                      .+|.+.+..+..|.++ +.+..  +.+++++|
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          94 KHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            9999999999999985 44444  66666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.71  E-value=3.1e-08  Score=71.89  Aligned_cols=51  Identities=35%  Similarity=0.537  Sum_probs=41.4

Q ss_pred             ChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHH
Q 007949           66 DSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLK  116 (583)
Q Consensus        66 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~  116 (583)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|.| +|+|+.  +.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999 577777  888998885

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.67  E-value=1.9e-08  Score=109.17  Aligned_cols=128  Identities=18%  Similarity=0.209  Sum_probs=112.5

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCChhHHHHHHHhCCHHHHHHHH
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR-DQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      .+-++. |+++..+|+.|.+|        |+.|+-.||..+|+.|+++.++++.+ |..+.|+|.+||..|..+++++|+
T Consensus       773 vellv~rganiehrdkkgf~p--------lImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl  844 (2131)
T KOG4369|consen  773 VELLVVRGANIEHRDKKGFVP--------LIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLL  844 (2131)
T ss_pred             HHHHHHhcccccccccccchh--------hhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHH
Confidence            344454 79999999999999        79999999999999999999998774 678899999999999999999999


Q ss_pred             hcCCCcCccCCCCchHHHHHh---hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           87 ESGAICSEHTFDGDRCHYAAL---NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t~~~aa~---~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      ..|++-..++-...||.-.+.   ..+++.+|+.+|..++..+..+.|..||.+|..++|.
T Consensus       845 ~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  845 NAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             HhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            999999888888888655555   8999999999998888766778899999999998883

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.59  E-value=1.1e-07  Score=95.18  Aligned_cols=97  Identities=21%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLESGAICSEHT   96 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~   96 (583)
                      +-.+|++|.++  ++++.+||..++.|+.++.-.|+..|+++|..+ ..|.||||.|++.|+...+++|+-.|||++..|
T Consensus       120 ~~~rDdD~~~~--~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTA--KDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCCcchhhH--HHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            45667777666  678899999999999999999999999999987 579999999999999999999999999999999


Q ss_pred             CCCchHHHHHh---hHHHHHHHH
Q 007949           97 FDGDRCHYAAL---NLKVRKLLK  116 (583)
Q Consensus        97 ~~g~t~~~aa~---~~~i~~~L~  116 (583)
                      .+|.||...|+   +.++..-|+
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHH
Confidence            99999877777   555544444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.53  E-value=1.1e-07  Score=59.26  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             CChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           65 WDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        65 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +|+||||+||..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999998873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=3.8e-07  Score=58.55  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             CChhHHHHHHHhCCHHHHHHHHhcCCCcCccCC
Q 007949           65 WDSVALYYACLAGHLDAARMLLESGAICSEHTF   97 (583)
Q Consensus        65 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~   97 (583)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            488999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>smart00875 BACK BTB And C-terminal Kelch

Probab=98.38  E-value=1.6e-07  Score=77.85  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHH
Q 007949          458 LCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKW  537 (583)
Q Consensus       458 ~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~W  537 (583)
                      |+.++.+|..|++..|.+.|.+||.+||..+.++++|..|+.+    .+..+  +.++++.+..|    .+++ +++.+|
T Consensus         1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~----~l~~i--L~~d~l~v~~E----~~v~-~av~~W   69 (101)
T smart00875        1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLE----QLLSL--LSSDDLNVPSE----EEVF-EAVLRW   69 (101)
T ss_pred             CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHH----HHHHH--hCcccCCCCCH----HHHH-HHHHHH
Confidence            5678999999999999999999999999999999999977654    22222  24556666667    5666 999999


Q ss_pred             HHHHhhhhhcchhhHHhHHHHHHHHHHHhh
Q 007949          538 LEAEAAELDKRDESALMFDKRLEMLMQVAK  567 (583)
Q Consensus       538 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (583)
                      ++++...   +. +...+++-+|++..+.+
T Consensus        70 ~~~~~~~---~~-~~~~ll~~ir~~~~~~~   95 (101)
T smart00875       70 VKHDPER---RR-HLPELLSHVRFPLLSPE   95 (101)
T ss_pred             HHCCHHH---HH-HHHHHHHhCCCCCCCHH
Confidence            9999732   32 56667777777665443

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.32  E-value=7.5e-07  Score=78.91  Aligned_cols=135  Identities=17%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             CCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC-CCcCccCCCCchHHHHHh---hHHHHHHHHhCCCCCCCCCCcccC
Q 007949           56 GVNVNARDQWDSVALYYACLAGHLDAARMLLESG-AICSEHTFDGDRCHYAAL---NLKVRKLLKAYEARPPPLGPLQAA  131 (583)
Q Consensus        56 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~~~aa~---~~~i~~~L~~~~~~~~~~~~~~~~  131 (583)
                      +.++|..|..||||++.|+..|..+.+.+|+.+| +++...|..|.+....|.   ..+++..|.++..+...  +....
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~--p~nss   79 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH--PMNSS   79 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC--cccCC
Confidence            4579999999999999999999999999999999 999999999998666666   78889999887665554  34444


Q ss_pred             CccchhccccccccchhhhhhhcccccccCCCCCCCCCCCcEEEEECCEeEe---hhHHHHhhccHHHHHhhcCCCCCC
Q 007949          132 LRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIE---AHRVILSARSVFFRRKFETDWRYR  207 (583)
Q Consensus       132 ~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~---~Hk~iL~a~S~~f~~~~~~~~~e~  207 (583)
                      .++-..+|+-.+.++.+.+..-|++|...               ..+.+.+|   -|...+...|+-|+-|...+|.+.
T Consensus        80 ~~e~lfyCE~Cd~~ip~~~~snH~tSttH---------------llsl~~~pa~k~~p~~i~pks~GyrLl~~~GW~pe  143 (223)
T KOG2384|consen   80 RDEALFYCEVCDIYIPNSKKSNHFTSTTH---------------LLSLQHIPANKFQPHLIKPKSLGYRLLSQYGWSPE  143 (223)
T ss_pred             CCCccchhhhhhhhccCCCCccchhhHHH---------------HhhhccCCCCCCCCCcCCCCCchHHHHHhcCCCcc
Confidence            45556678877777666555445544321               11122333   445568889999999999988753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1.8e-06  Score=81.31  Aligned_cols=102  Identities=25%  Similarity=0.183  Sum_probs=88.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC-CCCch-HHHHHh--hHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT-FDGDR-CHYAAL--NLKVR  112 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~t-~~~aa~--~~~i~  112 (583)
                      |..+...|+.+-...|++.--++|..|..|.|+|..|+..|+.++++.|++.|+|+|... ..+.| +|.||.  +.++-
T Consensus        16 Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvc   95 (396)
T KOG1710|consen   16 LLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVC   95 (396)
T ss_pred             HHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHH
Confidence            789999999999999998755699999999999999999999999999999999999653 44557 577777  89999


Q ss_pred             HHHHhCCCCCCCCCCcccCCccchhccc
Q 007949          113 KLLKAYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus       113 ~~L~~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      .+|+..|+....  .+.-|.|+-.+|.-
T Consensus        96 rllldaGa~~~~--vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   96 RLLLDAGARMYL--VNSVGRTAAQMAAF  121 (396)
T ss_pred             HHHHhccCcccc--ccchhhhHHHHHHH
Confidence            999999999887  67788998777763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.26  E-value=3.2e-06  Score=90.68  Aligned_cols=87  Identities=16%  Similarity=0.059  Sum_probs=79.3

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCC--cCccCCCCchHHHHHh---
Q 007949           33 PNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTFDGDRCHYAAL---  107 (583)
Q Consensus        33 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~t~~~aa~---  107 (583)
                      |+.+|-.||..|+.+++++|+++|+|++++|.+|+|.||..+..-..++-.+++++|++  ....|..|-||...|.   
T Consensus       240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            45558999999999999999999999999999999999999999889999999999999  8899999999766666   


Q ss_pred             hHHHHHHHHhCC
Q 007949          108 NLKVRKLLKAYE  119 (583)
Q Consensus       108 ~~~i~~~L~~~~  119 (583)
                      +.+|.+.+++..
T Consensus       320 k~emf~~ile~~  331 (782)
T KOG3676|consen  320 KKEMFQHILERR  331 (782)
T ss_pred             hHHHHHHHHHhh
Confidence            889998888873

>PF13606 Ank_3: Ankyrin repeat

Probab=98.16  E-value=2.5e-06  Score=53.16  Aligned_cols=30  Identities=33%  Similarity=0.721  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA   61 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~   61 (583)
                      +|+||        ||+||..|+.+++++|+++|+++|.
T Consensus         1 ~G~T~--------Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTP--------LHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCH--------HHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            47888        8999999999999999999999874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.10  E-value=3.3e-06  Score=84.64  Aligned_cols=89  Identities=25%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhc-CCCcCccCCCCchHHHHHh---hHHH
Q 007949           36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTFDGDRCHYAAL---NLKV  111 (583)
Q Consensus        36 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~~~aa~---~~~i  111 (583)
                      .+++|+..|++..++.+.-.|.+++.+|-+.+|+||.|+..|+.+++++|++. +.+++.+|+.|+||+.-|.   |.++
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v  588 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEV  588 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHH
Confidence            38999999999999999999999999999999999999999999999999976 8999999999999877777   8999


Q ss_pred             HHHHHhCCCCCCC
Q 007949          112 RKLLKAYEARPPP  124 (583)
Q Consensus       112 ~~~L~~~~~~~~~  124 (583)
                      +++|.+.......
T Consensus       589 ~k~L~~~~~~y~~  601 (622)
T KOG0506|consen  589 VKLLEEAQYPYTL  601 (622)
T ss_pred             HHHHHHHhccccc
Confidence            9999987665444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=8.2e-06  Score=83.72  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHcCCC--C--CccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHh-
Q 007949           33 PNGDVFEASRAGDVDRLRYILESGVN--V--NARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAAL-  107 (583)
Q Consensus        33 ~~~~L~~A~~~g~~~~v~~Ll~~g~~--~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~-  107 (583)
                      ...+|.-|....++..+-+||.+|..  +  .+-+.+|+|+||+||..|+..+.++|+.+|+|+.++|.+|+|++..|+ 
T Consensus       624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhh
Confidence            45678899999999999999998854  2  335668899999999999999999999999999999999999655555 


Q ss_pred             --hHHHHHHHHhCCCCC
Q 007949          108 --NLKVRKLLKAYEARP  122 (583)
Q Consensus       108 --~~~i~~~L~~~~~~~  122 (583)
                        ..+++.+|+.+|+..
T Consensus       704 a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPD  720 (749)
T ss_pred             cccHHHHHHHHHcCCCc
Confidence              788999999999853

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.02  E-value=6.7e-06  Score=52.66  Aligned_cols=33  Identities=30%  Similarity=0.616  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ   64 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~   64 (583)
                      +|.||        ||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~Tp--------Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTP--------LHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBH--------HHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccH--------HHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            37777        8999999999999999999999998873

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.99  E-value=9.7e-06  Score=82.78  Aligned_cols=106  Identities=19%  Similarity=0.137  Sum_probs=60.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCC--cCccCCCCch-HHHHHh--hHH
Q 007949           36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTFDGDR-CHYAAL--NLK  110 (583)
Q Consensus        36 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~t-~~~aa~--~~~  110 (583)
                      .+..|+..+++--+...-.+|.+.-.++.+..|.||+|+..|+.++++|++++|..  .+..+..|.| +|.+|.  +..
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            35556666665554444445555555555666666666666666666666666543  3444555665 455555  555


Q ss_pred             HHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          111 VRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       111 i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.++|+..|+....  ++..|+||-.-|-+.+.
T Consensus       949 vc~~lvdagasl~k--td~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRK--TDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             HHHHHHhcchhhee--cccCCCChHHHHHhcCC
Confidence            55666666665555  45566666555444443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.91  E-value=1.7e-05  Score=81.40  Aligned_cols=68  Identities=28%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      -.+.+.+|.|+        ||+||+.|++...++|+-+|+++-..|..|+|+|.||-..|..+|+..|+.+|+...
T Consensus       654 ~t~~~~~grt~--------LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  654 ETCGEGDGRTA--------LHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccccCCCCcch--------hhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            33456778899        799999999999999999999999999999999999999999999999999998754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.86  E-value=1.4e-05  Score=87.65  Aligned_cols=115  Identities=22%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCChhHHHHHHHhCCHHHHHHHHhcCCCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD--QWDSVALYYACLAGHLDAARMLLESGAIC   92 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   92 (583)
                      |++-..++-...||        |.+|...|..+++..|+..|+.+|.+.  +.|.+||++|+.+||...++.|++.|.++
T Consensus       847 gankehrnvsDytP--------lsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTP--------LSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             hccccccchhhcCc--------hhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            55555555556666        566666666667776666666666544  45666777777777777777777666666


Q ss_pred             CccCCCCc-hHHHHHh---hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           93 SEHTFDGD-RCHYAAL---NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        93 ~~~~~~g~-t~~~aa~---~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      |..-..++ |.+..+.   +.+++.+|+...+++..  +.+.|.|||.-+.
T Consensus       919 NaqIeTNrnTaltla~fqgr~evv~lLLa~~anveh--Raktgltplme~A  967 (2131)
T KOG4369|consen  919 NAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEH--RAKTGLTPLMEMA  967 (2131)
T ss_pred             ccccccccccceeeccccCcchHHHHHHHHhhhhhh--hcccCCcccchhh
Confidence            65443332 3332222   66666666666666555  5566666665444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.77  E-value=6.1e-05  Score=67.03  Aligned_cols=70  Identities=21%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAIC   92 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   92 (583)
                      +.+||++|..||||        ++.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-..|+.++++.|.+.-.+-
T Consensus         2 e~~in~rD~fgWTa--------lmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTA--------LMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchH--------HHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            46899999999999        79999999999999999999 889999999999999999999999999998774443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.69  E-value=2e-05  Score=79.15  Aligned_cols=70  Identities=23%  Similarity=0.463  Sum_probs=64.4

Q ss_pred             cccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCC
Q 007949           13 LDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA   90 (583)
Q Consensus        13 ~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga   90 (583)
                      +.|.|++.+|.+.+|+        ||.||..|+++++++|+. .+.+++.+|.||+|||--|...+|.+++++|-+.-.
T Consensus       527 l~g~D~~~~DyD~RTa--------LHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  527 LQGMDLETKDYDDRTA--------LHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             Hhcccccccccccchh--------heeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            3489999999999999        799999999999999998 689999999999999999999999999999976543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.61  E-value=0.00014  Score=74.69  Aligned_cols=83  Identities=29%  Similarity=0.296  Sum_probs=67.3

Q ss_pred             HHHHHHHcCCHHHHHHHHH--cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHH
Q 007949           36 DVFEASRAGDVDRLRYILE--SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLK  110 (583)
Q Consensus        36 ~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~  110 (583)
                      ++|+++.....+-+...+.  .+..++..|..|+||||+|+..||...++.|+..||++.++|.+|++ +|.++.  +.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            3799998888776665444  34568889999999999999999999999999999999999999998 688877  555


Q ss_pred             HH-HHHHhC
Q 007949          111 VR-KLLKAY  118 (583)
Q Consensus       111 i~-~~L~~~  118 (583)
                      ++ .+|..+
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            44 444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.60  E-value=0.00013  Score=74.85  Aligned_cols=66  Identities=23%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES   88 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   88 (583)
                      ...++.+|..|.||        ||+|+..|+...++.|+..|+++..+|..||+|||-|+..|+..++..++.+
T Consensus        45 ~~~id~~D~~g~Tp--------LhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTP--------LHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hceeccccCCCCcc--------HHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            45688899999999        7999999999999999999999999999999999999999999888777754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.56  E-value=0.00017  Score=73.96  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHh---
Q 007949           33 PNGDVFEASRAGDVDRLRYILESGVN--VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAAL---  107 (583)
Q Consensus        33 ~~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~---  107 (583)
                      .-+.||||+..|+-++|++++++|+.  .++.|..|.|+||-|+..++..+..+|++.|+.....|..|.||..-|.   
T Consensus       899 ~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~  978 (1004)
T KOG0782|consen  899 HCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAG  978 (1004)
T ss_pred             hhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcC
Confidence            34669999999999999999999976  6778899999999999999999999999999999999999999876665   


Q ss_pred             hHHHHHHHHhC
Q 007949          108 NLKVRKLLKAY  118 (583)
Q Consensus       108 ~~~i~~~L~~~  118 (583)
                      ..++..+|.+.
T Consensus       979 d~dlaayle~r  989 (1004)
T KOG0782|consen  979 DPDLAAYLESR  989 (1004)
T ss_pred             CchHHHHHhhh
Confidence            78888887653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.55  E-value=0.00016  Score=73.23  Aligned_cols=66  Identities=21%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             ccCCCCCC-CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh
Q 007949           14 DEIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus        14 ~~~din~~-d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      -|+++|.. .+.|.||        ||.|++.|+..-+++|.-+|++++++|..|.||+-+|-..||.++++.|++
T Consensus       155 lGA~~N~~hpekg~Tp--------LHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  155 LGAQANFFHPEKGNTP--------LHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cccccCCCCcccCCch--------hHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            38888877 4567888        799999999999999999999999999999999999999999988877654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.35  E-value=0.00016  Score=80.59  Aligned_cols=81  Identities=30%  Similarity=0.336  Sum_probs=71.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHh---hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAAL---NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~---~~~i~~  113 (583)
                      ||.|+..|..-+++.|+++|+++|..|..|+||+|.+...|+...+..|+.+|++.++.+.+|..++..+.   +.+++-
T Consensus       660 lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~  739 (785)
T KOG0521|consen  660 LHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVL  739 (785)
T ss_pred             hhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999998655543   555554


Q ss_pred             HHHh
Q 007949          114 LLKA  117 (583)
Q Consensus       114 ~L~~  117 (583)
                      ++..
T Consensus       740 l~~l  743 (785)
T KOG0521|consen  740 LLRL  743 (785)
T ss_pred             HHhh
Confidence            4443

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0018  Score=60.83  Aligned_cols=97  Identities=23%  Similarity=0.339  Sum_probs=77.0

Q ss_pred             EEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCC--HHh
Q 007949          345 VCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDID--PDQ  422 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~--~~~  422 (583)
                      |.+-++|..|...+.-|.....+|++|+..  ++.-.     ......|-|. =||.-|..+|.|+..|.+ .++  ...
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~--~i~~~-----~d~s~~IFID-RSpKHF~~ILNfmRdGdv-~LPe~~ke   77 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLET--DIPVE-----KDESGCIFID-RSPKHFDTILNFMRDGDV-DLPESEKE   77 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhc--CCccc-----cCCcCcEEec-CChhHHHHHHHhhhcccc-cCccchHH
Confidence            557789999999999999999999999997  33211     0112334444 478999999999998887 454  467


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007949          423 AEEMFDAASRYLLFPLKRAVADVLLLHL  450 (583)
Q Consensus       423 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l  450 (583)
                      +.+|+..|.+|.+++|.+.|...+....
T Consensus        78 l~El~~EA~fYlL~~Lv~~C~~~i~~~~  105 (230)
T KOG2716|consen   78 LKELLREAEFYLLDGLVELCQSAIARLI  105 (230)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhcc
Confidence            8899999999999999999999877654

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.18  E-value=0.00024  Score=66.67  Aligned_cols=100  Identities=15%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             HHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhh
Q 007949          331 EAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYM  410 (583)
Q Consensus       331 ~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~i  410 (583)
                      .++...+......|+.+......|++||++|++||++|+.+.++. .--|.      -..-.+..-+++-++|+.+|.|+
T Consensus       119 kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd-~e~~a------e~i~dik~ag~dm~~feafLh~l  191 (401)
T KOG2838|consen  119 KDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSD-EEPEA------EDICDIKFAGFDMDAFEAFLHSL  191 (401)
T ss_pred             HHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCC-CCcch------hhhhhhhhhccChHHHHHHHHHH
Confidence            333334444555699999999999999999999999999998862 11110      12223566688999999999999


Q ss_pred             cCCCCC--CCCHHhHHHHHHHHhccCchH
Q 007949          411 YTDGLK--DIDPDQAEEMFDAASRYLLFP  437 (583)
Q Consensus       411 Yt~~~~--~i~~~~~~~ll~~A~~~~~~~  437 (583)
                      |+|+..  ++.-.++.-|.++..-|+.+.
T Consensus       192 ~tgEfgmEd~~fqn~diL~QL~edFG~~k  220 (401)
T KOG2838|consen  192 ITGEFGMEDLGFQNSDILEQLCEDFGCFK  220 (401)
T ss_pred             HhcccchhhcCCchHHHHHHHHHhhCCch
Confidence            999872  222245666667777777644

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.0018  Score=65.21  Aligned_cols=133  Identities=20%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHHhHH---HHH
Q 007949          351 KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAE---EMF  427 (583)
Q Consensus       351 ~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~~~~---~ll  427 (583)
                      +..+.+|+.+++++++.|+.|+... .+.++        ...+.+.+.++..++.+..|.|+..- ........   .++
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d-~~~~~--------~~~~~~~d~~~~~~~~~~~F~~~~s~-~~~~~~~~~~~~~~  178 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSD-VFKES--------SKLITLLEEKPEVLEALNGFQVLPSQ-VSSVERIFEKHPDL  178 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccc-cchhc--------cccccccccchhhHhhhceEEEeccc-hHHHHHhhcCChhh
Confidence            5669999999999999999999872 22222        22347778899999999999999765 23333343   888


Q ss_pred             HHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh--hHHHhhCchhHHH
Q 007949          428 DAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIAC--NFETFADSREFRA  496 (583)
Q Consensus       428 ~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~--nf~~v~~~~~f~~  496 (583)
                      ..|..++...++..|...+.+.+   ...++...+..+..++...+...|..++..  ++..+....++..
T Consensus       179 a~~f~~~~~~lk~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~  246 (297)
T KOG1987|consen  179 AAAFKYKNRHLKLACMPVLLSLI---ETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVK  246 (297)
T ss_pred             hhccccccHHHHHHHHHHHHHHH---HhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHH
Confidence            89999999999999999999988   577778888999999999999999999998  7777766555543

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=96.73  E-value=0.011  Score=46.62  Aligned_cols=82  Identities=28%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             EEEEEC-CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhh-----cCCC---C
Q 007949          345 VCVRVD-KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYM-----YTDG---L  415 (583)
Q Consensus       345 v~~~~~-~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~i-----Yt~~---~  415 (583)
                      |.++.. |..|-.-|. .|.-|.-+|+|+++.+.+.|.       ...++.+.+++..+++.+-+|+     |++.   +
T Consensus        19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~-------~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~ei   90 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEA-------EKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEI   90 (112)
T ss_pred             eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCcccccc-------ccceEEeccchHHHHHHHHHHhhheeeeccccccC
Confidence            455543 445554444 467899999999985555555       3468999999999999999886     5654   1


Q ss_pred             C--CCCHHhHHHHHHHHhccC
Q 007949          416 K--DIDPDQAEEMFDAASRYL  434 (583)
Q Consensus       416 ~--~i~~~~~~~ll~~A~~~~  434 (583)
                      +  +|+++.+++||.+|+++.
T Consensus        91 PeF~IppemaleLL~aAn~Le  111 (112)
T KOG3473|consen   91 PEFDIPPEMALELLMAANYLE  111 (112)
T ss_pred             CCCCCCHHHHHHHHHHhhhhc
Confidence            1  577899999999999874

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.72  E-value=0.00082  Score=74.67  Aligned_cols=121  Identities=16%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCccCCCChhHHHHHHHhCCHHHHHHHH-hcCCCcCccCCCCch-HHHHHh--hHHH
Q 007949           37 VFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLL-ESGAICSEHTFDGDR-CHYAAL--NLKV  111 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t-~~~aa~--~~~i  111 (583)
                      +|+++..+..-.++.+++- |......|..|.-.+|+ |..++.+.+-+|+ ..|..++.+|..|+| +|+|+.  +..+
T Consensus       578 lhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l  656 (975)
T KOG0520|consen  578 LHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKL  656 (975)
T ss_pred             HHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHH
Confidence            4555555555555555542 43334444444444444 3344444443333 334555555555555 344444  4445


Q ss_pred             HHHHHhCCCCCCCC----CCcccCCccchhcccccc----ccchhhhhhhccccc
Q 007949          112 RKLLKAYEARPPPL----GPLQAALRDTFLGCGANR----QFLEEAEVVLGISGV  158 (583)
Q Consensus       112 ~~~L~~~~~~~~~~----~~~~~~~t~L~~A~~~~~----~~l~~~~~~~~~~~l  158 (583)
                      +..|+..|++....    .....|.|+-.+|-.+++    .++.+.....+.+.+
T Consensus       657 ~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~  711 (975)
T KOG0520|consen  657 VASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSNL  711 (975)
T ss_pred             HHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhhc
Confidence            55555444332221    122346666666655555    344444444444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.37  E-value=0.0062  Score=66.51  Aligned_cols=106  Identities=23%  Similarity=0.229  Sum_probs=82.9

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHc--C--CCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHh
Q 007949           32 VPNGDVFEASRAGDVDRLRYILES--G--VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAAL  107 (583)
Q Consensus        32 ~~~~~L~~A~~~g~~~~v~~Ll~~--g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~  107 (583)
                      .+...+..||+.|+...|+..++.  .  .++|+.|--|+++|+.|..+.|.++.++|++++...      |..+++|..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI~   97 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAIA   97 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHHH
Confidence            355668899999999999999983  2  578999999999999999999999999999876654      666555554


Q ss_pred             --hHHHHHHHHhCCCCCCC--------CCCcccCCccchhcccccc
Q 007949          108 --NLKVRKLLKAYEARPPP--------LGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       108 --~~~i~~~L~~~~~~~~~--------~~~~~~~~t~L~~A~~~~~  143 (583)
                        ..++|++++.+......        ......+.||+.+||-.|+
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn  143 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN  143 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc
Confidence              77888888876654311        0134568899999997766

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=96.28  E-value=0.0029  Score=62.10  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=84.6

Q ss_pred             CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC-CCCHHHHHHHhhhhcCCCCCCCCHHhHHHHHHH
Q 007949          351 KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH-DLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDA  429 (583)
Q Consensus       351 ~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~-~v~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~  429 (583)
                      .+.|.|.+..|...-.||+..+..  ...+++      ..+.|+|. +.+-.+|+=+++|+..... .+++.|+..++..
T Consensus        13 ~rdF~C~~~lL~~~M~YF~~~l~~--~~~~~~------~~~~idisVhCDv~iF~WLm~yv~~~~p-~l~~~NvvsIliS   83 (317)
T PF11822_consen   13 KRDFTCPRDLLVSEMRYFAEYLSR--YINDSQ------RWEEIDISVHCDVHIFEWLMRYVKGEPP-SLTPSNVVSILIS   83 (317)
T ss_pred             ceeeeccHHHHHHhhHHHHHHHhh--cccccC------cCCCcceEEecChhHHHHHHHHhhcCCC-cCCcCcEEEeEeh
Confidence            367999999999999999999964  111111      22345544 4678999999999999666 8999999999999


Q ss_pred             HhccCchHHHHHHHHHHHhhcccC-----Ch--hhHHHHHHHHHhcCcHHHHH
Q 007949          430 ASRYLLFPLKRAVADVLLLHLEMV-----SP--AELCHWLILSDMYGVFKVRE  475 (583)
Q Consensus       430 A~~~~~~~l~~~c~~~l~~~l~~~-----~~--~n~~~~l~~A~~~~~~~L~~  475 (583)
                      |++++|++|++.|..|+.+++..+     +.  -|---+.++|..+...+|..
T Consensus        84 S~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~  136 (317)
T PF11822_consen   84 SEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA  136 (317)
T ss_pred             hhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence            999999999999999998877210     00  11112456666666666555

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.025  Score=53.35  Aligned_cols=90  Identities=14%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhcCCCC--CCcccEEEcCCCCHHHHHHHhhhhcCCcccCChh--hHHHHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWR--YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD--DMEDLVKI  247 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~--e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~--~~~~ll~~  247 (583)
                      =|.+.|||..|..++.-|.--..+|+.|+..++.  ......|-+ +=+|.-|..+|+||-.|.+.++..  .+.+|+.-
T Consensus         6 ~vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E   84 (230)
T KOG2716|consen    6 TVKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLRE   84 (230)
T ss_pred             eEEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence            3567899999999999999999999999998764  222334544 578999999999999888776544  56688888


Q ss_pred             HhHhchHHHHHHHHH
Q 007949          248 CKVCKCESLQRIIEK  262 (583)
Q Consensus       248 a~~~~~~~l~~~l~~  262 (583)
                      |+.|.++.|.+.|+.
T Consensus        85 A~fYlL~~Lv~~C~~   99 (230)
T KOG2716|consen   85 AEFYLLDGLVELCQS   99 (230)
T ss_pred             HHHhhHHHHHHHHHH
Confidence            887777777666653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.18  E-value=0.0095  Score=60.96  Aligned_cols=72  Identities=24%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCCCCc------cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchHHHHHhhHHHHHHHHh
Q 007949           46 VDRLRYILESGVNVNA------RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKA  117 (583)
Q Consensus        46 ~~~v~~Ll~~g~~~~~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~~~aa~~~~i~~~L~~  117 (583)
                      ...+++|.++++..|.      .+....|+||+|+..|...++.++|+.|+|+..+|..|.||...+.+.++...++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a  481 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIA  481 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHH
Confidence            5677888888766543      34457899999999999999999999999999999999998877778888777763

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=96.11  E-value=0.00084  Score=55.66  Aligned_cols=97  Identities=25%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCC
Q 007949          263 ELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDL  342 (583)
Q Consensus       263 ~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~  342 (583)
                      |+.++.+|..+++.+|...|.+|+..||.               ++    ...++|..+|.+.+..++++       +  
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~---------------~v----~~~~~f~~L~~~~l~~iL~~-------~--   52 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFN---------------EV----SKSDEFLELPFDQLIEILSS-------D--   52 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHH---------------HH----TTSHHHHCS-HHHHHHHHHT-------S--
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHH---------------HH----ccchhhhcCCHHHHHHHHhc-------c--
Confidence            68899999999999999999999999974               11    13557889999999999987       5  


Q ss_pred             CcEEEEECCEEEEeeeeeeec----cCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHH
Q 007949          343 ADVCVRVDKKIFRCHQVVLAS----RSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKM  406 (583)
Q Consensus       343 ~Dv~~~~~~~~~~ahr~iL~~----~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~  406 (583)
                       ++.+..|+..|.+-..|+..    |.+++..++..                  |+++.+++..+..+
T Consensus        53 -~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~------------------iR~~~l~~~~L~~~  101 (103)
T PF07707_consen   53 -DLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSC------------------IRFPLLSPEELQNV  101 (103)
T ss_dssp             -S--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCC------------------CHHHCT-HHHHHHC
T ss_pred             -ccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHh------------------CCcccCCHHHHHHH
Confidence             66666677777777777643    45566767653                  67777777776554

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.08  E-value=0.0034  Score=51.14  Aligned_cols=90  Identities=24%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             EEEEECCEEEEeeeeeee-ccCHHHHHHHcCc-cccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcC-CCCCCCCHH
Q 007949          345 VCVRVDKKIFRCHQVVLA-SRSEYFKARLSRM-KDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT-DGLKDIDPD  421 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~-~~S~~F~~~~~~~-~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt-~~~~~i~~~  421 (583)
                      |.+-|+|+.|.+-+..|. ....+|..|+... ..+...       ....+-+ +=+|..|+.+|+|+.+ +.++.....
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-------~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~   72 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDD-------DDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEI   72 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-------TTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCC-------ccceEEe-ccChhhhhHHHHHHhhcCccCCCCch
Confidence            578899999999999987 4567999999861 011111       2234544 4589999999999999 666333356


Q ss_pred             hHHHHHHHHhccCchHH-HHHH
Q 007949          422 QAEEMFDAASRYLLFPL-KRAV  442 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l-~~~c  442 (583)
                      ....++..|.+|+++.+ .+.|
T Consensus        73 ~~~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   73 CLEELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             -HHHHHHHHHHHT-HHHHBHHC
T ss_pred             hHHHHHHHHHHcCCCccccCCC
Confidence            78899999999999998 6655

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=95.97  E-value=0.014  Score=47.54  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             EEEEECCEeEehhHHHHh-hccHHHHHhhcCC---CCCCcccEEEcCCCCHHHHHHHhhhhcC-CcccCC-hhhHHHHHH
Q 007949          173 VVFYVQGRPIEAHRVILS-ARSVFFRRKFETD---WRYRNEIRFSREKLSYPALYGLIHFFYS-DRLEIA-VDDMEDLVK  246 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~-a~S~~f~~~~~~~---~~e~~~~~i~l~~v~~~~~~~lL~ylYt-g~~~i~-~~~~~~ll~  246 (583)
                      |.+.|||+.|.+-+..|. ....+|..|+.+.   ........+-+ +=+|..|+.+|+|+-+ +.+..+ ......++.
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            678999999999999998 5556899999864   22334455555 5799999999999999 666554 345667777


Q ss_pred             HHhHhchHHH
Q 007949          247 ICKVCKCESL  256 (583)
Q Consensus       247 ~a~~~~~~~l  256 (583)
                      -|+.++++.+
T Consensus        80 Ea~fy~l~~l   89 (94)
T PF02214_consen   80 EAEFYGLDEL   89 (94)
T ss_dssp             HHHHHT-HHH
T ss_pred             HHHHcCCCcc
Confidence            7777766554

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00248 ANK ankyrin repeats

Probab=95.92  E-value=0.013  Score=34.93  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=21.7

Q ss_pred             ChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           66 DSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        66 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      |.||+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6778888888888888888887776653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=95.56  E-value=0.011  Score=66.40  Aligned_cols=78  Identities=21%  Similarity=0.103  Sum_probs=69.1

Q ss_pred             CCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccc
Q 007949           64 QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus        64 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      ..|.|+||.|+..|...+.+.|++.|+++|..|..|++ +|.+..  +...+..|+++|++...  .+..|++|++.|.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a--~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA--FDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc--cCccCcchhhHHhh
Confidence            36799999999999999999999999999999999998 566666  88888999999999888  68999999999986


Q ss_pred             ccc
Q 007949          141 ANR  143 (583)
Q Consensus       141 ~~~  143 (583)
                      ..+
T Consensus       732 ~~~  734 (785)
T KOG0521|consen  732 AAN  734 (785)
T ss_pred             hcc
Confidence            544

>smart00512 Skp1 Found in Skp1 protein family

Probab=95.48  E-value=0.049  Score=45.21  Aligned_cols=62  Identities=19%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCC
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGL  415 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~  415 (583)
                      +++.. +|..|.+.+... ..|..++.|+...+...+        ....|.+++++..+++.+++|++...-
T Consensus         4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~--------~~~~Ipl~~v~~~~L~~Vi~yc~~h~~   66 (104)
T smart00512        4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDE--------NNNPIPLPNVTSKILSKVIEYCEHHVD   66 (104)
T ss_pred             EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccC--------CCCCccCCCcCHHHHHHHHHHHHHccc
Confidence            44444 678899988875 789999999986311111        114799999999999999999986643

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.47  E-value=0.032  Score=61.19  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ..++|+.|.-|+++        |+.|..+.|.+++++|++++..+  .     .+|.+|...|...+++.++.+-.....
T Consensus        52 ~lninc~d~lGr~a--------l~iai~nenle~~eLLl~~~~~~--g-----dALL~aI~~~~v~~VE~ll~~~~~~~~  116 (822)
T KOG3609|consen   52 KLNINCRDPLGRLA--------LHIAIDNENLELQELLLDTSSEE--G-----DALLLAIAVGSVPLVELLLVHFVDAPY  116 (822)
T ss_pred             ccchhccChHhhhc--------eecccccccHHHHHHHhcCcccc--c-----hHHHHHHHHHHHHHHHHHHhcccccch
Confidence            57899999999999        68899999999999998887654  2     278888888888888888876433211


Q ss_pred             ----------cCCCCchHHH-HHh--hHHHHHHHHhCCCCCCC
Q 007949           95 ----------HTFDGDRCHY-AAL--NLKVRKLLKAYEARPPP  124 (583)
Q Consensus        95 ----------~~~~g~t~~~-aa~--~~~i~~~L~~~~~~~~~  124 (583)
                                .-..+.||.. ||.  +.+|+++|+..|+.+..
T Consensus       117 ~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  117 LERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             hccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                      1123346544 444  78888888888887655

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.099  Score=46.71  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCC------------
Q 007949          350 DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKD------------  417 (583)
Q Consensus       350 ~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~------------  417 (583)
                      +|+.|.+-..+. ..|..+.+++...        |..... ..|.++.|...+|..+++|++...-+.            
T Consensus        13 DG~~f~ve~~~a-~~s~~i~~~~~~~--------~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~   82 (162)
T KOG1724|consen   13 DGEIFEVEEEVA-RQSQTISAHMIED--------GCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEE   82 (162)
T ss_pred             CCceeehhHHHH-HHhHHHHHHHHHc--------CCCccC-CccccCccCHHHHHHHHHHHHHccccccccccccccccc
Confidence            677787777764 7788888888752        111101 368999999999999999999865310            


Q ss_pred             --C----------CHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHH
Q 007949          418 --I----------DPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHW  461 (583)
Q Consensus       418 --i----------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~  461 (583)
                        +          ....+.+++.+|++|.+++|...|++.+...+...|++.....
T Consensus        83 ~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~  138 (162)
T KOG1724|consen   83 TDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI  138 (162)
T ss_pred             CCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence              1          1246788888888888888888888888888765566655444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=94.84  E-value=0.035  Score=62.21  Aligned_cols=37  Identities=30%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCC
Q 007949           55 SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI   91 (583)
Q Consensus        55 ~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~   91 (583)
                      .|..++.+|..||||||||+..|+..++..|++.|++
T Consensus       630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGAD  666 (975)
T ss_pred             cccccccccCCCCcccchHhhcCHHHHHHHHHHhccc
Confidence            4555555555555555555555555555555544443

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=94.81  E-value=0.097  Score=48.17  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             cEEEEECCEEEEeeeeeeecc--CHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH
Q 007949          344 DVCVRVDKKIFRCHQVVLASR--SEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD  421 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~--S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~  421 (583)
                      -|.+-++|+.|..-+--|..|  -.-+.+||.+. +|.-.     ++....+- -+=+|.-|+.++.|+..|.++..+..
T Consensus        10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~-g~~~~-----~d~kGa~l-IDRsp~yFepIlNyLr~Gq~~~~s~i   82 (302)
T KOG1665|consen   10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGR-GAMCQ-----EDKKGAVL-IDRSPKYFEPILNYLRDGQIPSLSDI   82 (302)
T ss_pred             hheeecCCeEEEEeehhhcccCchHHHHHHHccC-CCccc-----cccCceEE-EccCchhhHHHHHHHhcCceeecCCc
Confidence            577888999988777666554  45788999874 33211     11222233 34578899999999999999878888


Q ss_pred             hHHHHHHHHhccCchHHHHHHHH
Q 007949          422 QAEEMFDAASRYLLFPLKRAVAD  444 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~~~c~~  444 (583)
                      ++..++..|++|++-.|++..++
T Consensus        83 ~~lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   83 DCLGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             cHHHHHHHhhHHhhHhHHhHHhh
Confidence            99999999999999999998887

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=94.76  E-value=0.14  Score=37.98  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcC
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS  231 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYt  231 (583)
                      |+++. +|+.|.+.+.++ ..|..++.|+.+...+..  .|++++|+..+++.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence            45554 778999988876 589999999975333323  799999999999999999973

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.25  Score=41.27  Aligned_cols=97  Identities=22%  Similarity=0.229  Sum_probs=70.3

Q ss_pred             ECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCH--------
Q 007949          349 VDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDP--------  420 (583)
Q Consensus       349 ~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~--------  420 (583)
                      .+|..|.+...+ |.||-..+.|+...   .+.       .. .+..+.|...+|..+++|+-.+.- ..+.        
T Consensus         9 ~dge~F~vd~~i-AerSiLikN~l~d~---~~~-------n~-p~p~pnVrSsvl~kv~ew~ehh~~-s~sede~d~~~r   75 (158)
T COG5201           9 IDGEIFRVDENI-AERSILIKNMLCDS---TAC-------NY-PIPAPNVRSSVLMKVQEWMEHHTS-SLSEDENDLEIR   75 (158)
T ss_pred             cCCcEEEehHHH-HHHHHHHHHHhccc---ccc-------CC-CCcccchhHHHHHHHHHHHHhccc-cCCCccChHhhh
Confidence            467778877766 68898899988741   111       22 367788999999999999876543 1111        


Q ss_pred             -----------------HhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhH
Q 007949          421 -----------------DQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAEL  458 (583)
Q Consensus       421 -----------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~  458 (583)
                                       +.+.++..+|+++.++.|.+.|+..+.+.+..-+++..
T Consensus        76 ks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeei  130 (158)
T COG5201          76 KSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEI  130 (158)
T ss_pred             ccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHH
Confidence                             34677888899999999999999888888765555543

>smart00248 ANK ankyrin repeats

Probab=94.29  E-value=0.072  Score=31.36  Aligned_cols=24  Identities=21%  Similarity=0.607  Sum_probs=21.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Q 007949           37 VFEASRAGDVDRLRYILESGVNVN   60 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~   60 (583)
                      +|+|+..|+.++++.|+..|.+++
T Consensus         6 l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        6 LHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            899999999999999999987664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=94.14  E-value=0.15  Score=51.68  Aligned_cols=87  Identities=28%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             EEEEECCEEEEeeeeeeec--cCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHHh
Q 007949          345 VCVRVDKKIFRCHQVVLAS--RSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ  422 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~--~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~~  422 (583)
                      |.+-|+|+.|.--+.-|+.  +-.+|.+++++  .|...+.     ....|-| +=+|+.|..+|.|+.|+++ +++.-.
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~--~~~s~~~-----~~~~iFI-DRDPdlFaviLn~LRTg~L-~~~g~~   83 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSG--RINSLKD-----ESGAIFI-DRDPDLFAVILNLLRTGDL-DASGVF   83 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcC--ccccccC-----CCCceEe-cCCchHHHHHHHHHhcCCC-CCccCc
Confidence            6688999999988887654  45899999987  6654432     1122322 3479999999999999999 566655


Q ss_pred             HHHHHH-HHhccCchHHHH
Q 007949          423 AEEMFD-AASRYLLFPLKR  440 (583)
Q Consensus       423 ~~~ll~-~A~~~~~~~l~~  440 (583)
                      ...++. .|.+|++.++.+
T Consensus        84 ~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   84 PERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             hhhhhhhhhhhcCcHHHHH
Confidence            555555 999999998876

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.11  E-value=0.066  Score=55.08  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYAC   74 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   74 (583)
                      |.||||+..|.-.+|.++|..|+|+..+|..|+||..++.
T Consensus       432 T~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5599999999999999999999999999999999999876

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=93.57  E-value=0.32  Score=38.57  Aligned_cols=73  Identities=10%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             CCEeEehhHHHHhhccHHHHHhhcCCC--CCCcccEEEcCCCCHHHHHHHhhhh-----cCCc------ccCChhhHHHH
Q 007949          178 QGRPIEAHRVILSARSVFFRRKFETDW--RYRNEIRFSREKLSYPALYGLIHFF-----YSDR------LEIAVDDMEDL  244 (583)
Q Consensus       178 ~~~~~~~Hk~iL~a~S~~f~~~~~~~~--~e~~~~~i~l~~v~~~~~~~lL~yl-----Ytg~------~~i~~~~~~~l  244 (583)
                      +|..|-.-|. +|.-|+-+|+||.+..  .+.....+.+.+++...++.+.+|+     |++.      ++|+++-..++
T Consensus        25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL  103 (112)
T KOG3473|consen   25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL  103 (112)
T ss_pred             CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence            4455555554 4567889999999764  4556678999999999999999998     5543      57899999999


Q ss_pred             HHHHhHh
Q 007949          245 VKICKVC  251 (583)
Q Consensus       245 l~~a~~~  251 (583)
                      |.+|..+
T Consensus       104 L~aAn~L  110 (112)
T KOG3473|consen  104 LMAANYL  110 (112)
T ss_pred             HHHhhhh
Confidence            9998755

>smart00512 Skp1 Found in Skp1 protein family

Probab=93.34  E-value=0.37  Score=39.89  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCC-CcccEEEcCCCCHHHHHHHhhhhcCC
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRY-RNEIRFSREKLSYPALYGLIHFFYSD  232 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e-~~~~~i~l~~v~~~~~~~lL~ylYtg  232 (583)
                      |+++. +|..|.+.+.+. ..|..++.|+.+...+ .....|++++|+..+++.+++|++..
T Consensus         4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h   64 (104)
T smart00512        4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH   64 (104)
T ss_pred             EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence            55554 778999999876 6899999999753222 22257999999999999999999864

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=92.90  E-value=0.31  Score=37.97  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             CCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcH
Q 007949          418 IDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVF  471 (583)
Q Consensus       418 i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~  471 (583)
                      ++.+.+.+|+.+|+++++++|...|+..+...+...|++.+-.++.+...+...
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~e   64 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPE   64 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHH
Confidence            466789999999999999999999999999999777888888888777665543

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=92.76  E-value=0.44  Score=48.51  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             EEEEECCEeEehhHHHHhhcc--HHHHHhhcCCCCCCccc--EEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH-H
Q 007949          173 VVFYVQGRPIEAHRVILSARS--VFFRRKFETDWRYRNEI--RFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVK-I  247 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~S--~~f~~~~~~~~~e~~~~--~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~-~  247 (583)
                      |.|.|||+.|.-.+.-|+-..  ++|.+++.+.|......  .|-+ +=+|+.|..+|+|+-||++++..-....++- -
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE   91 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE   91 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence            458899999988887776555  68999998777543222  2433 5789999999999999999986555555554 6


Q ss_pred             HhHhchHHHHHHH
Q 007949          248 CKVCKCESLQRII  260 (583)
Q Consensus       248 a~~~~~~~l~~~l  260 (583)
                      |..|++..+.+.+
T Consensus        92 A~fYGl~~llrrl  104 (465)
T KOG2714|consen   92 AMFYGLTPLLRRL  104 (465)
T ss_pred             hhhcCcHHHHHHh
Confidence            7778776665533

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=91.65  E-value=0.65  Score=34.30  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcC
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT  412 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt  412 (583)
                      +.+.. +|+.|.+-+.+. ..|..++.|+...+   .        ....|.+++++..+++.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~---~--------~~~~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLG---D--------EDEPIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTC---C--------CGTEEEETTS-HHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhc---c--------cccccccCccCHHHHHHHHHHHHh
Confidence            34444 678898888875 79999999998621   0        111699999999999999999874

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>smart00875 BACK BTB And C-terminal Kelch

Probab=90.89  E-value=0.04  Score=45.08  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCC
Q 007949          263 ELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDL  342 (583)
Q Consensus       263 ~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~  342 (583)
                      |+.++.+|..+++..|.+.|..|+..||.               ..    ...++|..+|.+.+..++.+       +  
T Consensus         1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~---------------~~----~~~~~f~~L~~~~l~~iL~~-------d--   52 (101)
T smart00875        1 CLGIRRFAELYGLEELLEKALRFILKNFL---------------EV----AQSEEFLELSLEQLLSLLSS-------D--   52 (101)
T ss_pred             CHhHHHHHHHhChHHHHHHHHHHHHHHHH---------------HH----hcCcHHhcCCHHHHHHHhCc-------c--
Confidence            45677889999999999999999998864               11    12478999999999999877       5  


Q ss_pred             CcEEEEECCEEEEeeeeeee
Q 007949          343 ADVCVRVDKKIFRCHQVVLA  362 (583)
Q Consensus       343 ~Dv~~~~~~~~~~ahr~iL~  362 (583)
                       ++.+..+...|.+-..|+.
T Consensus        53 -~l~v~~E~~v~~av~~W~~   71 (101)
T smart00875       53 -DLNVPSEEEVFEAVLRWVK   71 (101)
T ss_pred             -cCCCCCHHHHHHHHHHHHH
Confidence             4443335555666555554

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.24  E-value=0.26  Score=49.49  Aligned_cols=112  Identities=17%  Similarity=0.053  Sum_probs=71.7

Q ss_pred             CEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHH---HHHHHHhHhchHH
Q 007949          179 GRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDME---DLVKICKVCKCES  255 (583)
Q Consensus       179 ~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~---~ll~~a~~~~~~~  255 (583)
                      +..+.+|+++++++++.|+.|+..+..+.....+.+.+..+..++.+..|.|+..-........   .++..+..++.+.
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~  188 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH  188 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence            5669999999999999999999887655544455777889999999999999965322222222   4455555555556


Q ss_pred             HHHHHHHHH----------HHHHHHHHcCChhHHHHHHHHHHhcC
Q 007949          256 LQRIIEKEL----------IHQKYAEYKALRDVDNSQKRFILQGS  290 (583)
Q Consensus       256 l~~~l~~~l----------~~~~~a~~~~~~~l~~~~~~~i~~~~  290 (583)
                      ++..+.+.+          .....+...+...+...+..++...+
T Consensus       189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  233 (297)
T KOG1987|consen  189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGF  233 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccc
Confidence            655554211          12223343444445555656655533

>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]

Probab=87.68  E-value=0.24  Score=49.47  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=109.6

Q ss_pred             cEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCH--H
Q 007949          344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDP--D  421 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~--~  421 (583)
                      +.++......+.+|+.+|...|+.|..+...  .   ...    +....+.+.+++...+..+.+++|.. + .--.  .
T Consensus        28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~--~---~~~----~~~~~~~~~~~~c~~~~~~~~~l~~~-~-ek~e~~~   96 (319)
T KOG1778|consen   28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQ--P---CRK----SLVKGNKILGVPCKAVNVFIRFLYSS-L-EKHEMVF   96 (319)
T ss_pred             hhhhhhhhhhhHHHHhcccccchHHHHHHhh--h---cch----hhhhcceeecccccccchhhhhhccc-h-hhhHHHH
Confidence            4455556778999999999999999887765  2   100    12234666777888888999999988 4 2222  3


Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCchhHHHHHhc
Q 007949          422 QAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLT  500 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~l~~~  500 (583)
                      ....++.....+.++..+..|...+..-+  ++..+++.++..+..|....|...+...+...|.....++.|..+...
T Consensus        97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~--~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~  173 (319)
T KOG1778|consen   97 FDIHLLALSHVYVVPQPKADCDPILECGL--FDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP  173 (319)
T ss_pred             HHHHHHhhhhhhhccCccccCCccccchh--hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence            45556666678889999988888776633  367889999999999999999999999999999999998877666544

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=85.74  E-value=1.2  Score=44.22  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             EeEehhHHHHhhccHHHHHhhcC---CCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhHhchHHH
Q 007949          180 RPIEAHRVILSARSVFFRRKFET---DWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKICKVCKCESL  256 (583)
Q Consensus       180 ~~~~~Hk~iL~a~S~~f~~~~~~---~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~a~~~~~~~l  256 (583)
                      +.|.|.+.+|...=.||+..+..   +-.+.....|.+ ..+-.+|+=+++|+......+++.|+..++.-|..++++.|
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~L   92 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESL   92 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHH
Confidence            67999999999999999999964   344445566665 57889999999999998888999999888888888877766


Q ss_pred             HHH
Q 007949          257 QRI  259 (583)
Q Consensus       257 ~~~  259 (583)
                      .+.
T Consensus        93 ve~   95 (317)
T PF11822_consen   93 VEE   95 (317)
T ss_pred             HHH
Confidence            654

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=85.57  E-value=2.8  Score=38.89  Aligned_cols=90  Identities=11%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             CcEEEEECCEeEehhHHHHhhccH--HHHHhhcCC-C--CCCcccEEEcCCCCHHHHHHHhhhhcCCcccC-ChhhHHHH
Q 007949          171 PDVVFYVQGRPIEAHRVILSARSV--FFRRKFETD-W--RYRNEIRFSREKLSYPALYGLIHFFYSDRLEI-AVDDMEDL  244 (583)
Q Consensus       171 ~Dv~~~v~~~~~~~Hk~iL~a~S~--~f~~~~~~~-~--~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i-~~~~~~~l  244 (583)
                      +-|.+.++|+.|.--..-|..|-|  -+..||.+. |  .+..+..+-+ +=+|.-|+-+|.|+-.|.++. +.-++..+
T Consensus         9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv   87 (302)
T KOG1665|consen    9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGV   87 (302)
T ss_pred             hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence            478888999988766666666654  578899763 2  1223333333 578999999999999999855 44478899


Q ss_pred             HHHHhHhchHHHHHHHH
Q 007949          245 VKICKVCKCESLQRIIE  261 (583)
Q Consensus       245 l~~a~~~~~~~l~~~l~  261 (583)
                      ++.|+.+++-.|+..++
T Consensus        88 LeeArff~i~sL~~hle  104 (302)
T KOG1665|consen   88 LEEARFFQILSLKDHLE  104 (302)
T ss_pred             HHHhhHHhhHhHHhHHh
Confidence            99999998777777765

>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=83.94  E-value=16  Score=32.39  Aligned_cols=101  Identities=16%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             CcEEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH
Q 007949          343 ADVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD  421 (583)
Q Consensus       343 ~Dv~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~  421 (583)
                      .-|.+-|+|..|---|.-|..-+ .|...+.+...+ ..+.+  .+   .--.+-+=+|.-|..+|.|+..|++ .++.-
T Consensus        21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~-l~sdr--De---tGAYlIDRDP~~FgpvLNylRhgkl-vl~~l   93 (210)
T KOG2715|consen   21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKD-LPSDR--DE---TGAYLIDRDPFYFGPVLNYLRHGKL-VLNKL   93 (210)
T ss_pred             EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccC-CCCCc--cc---cCceEeccCcchHHHHHHHHhcchh-hhhhh
Confidence            35777889999999999997766 555666654110 11100  01   1123334578899999999999999 67775


Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007949          422 QAEEMFDAASRYLLFPLKRAVADVLLLHL  450 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l  450 (583)
                      .=..+|..|++|.++.|.+...+-+.+..
T Consensus        94 ~eeGvL~EAefyn~~~li~likd~i~dRd  122 (210)
T KOG2715|consen   94 SEEGVLEEAEFYNDPSLIQLIKDRIQDRD  122 (210)
T ss_pred             hhhccchhhhccCChHHHHHHHHHHHHHh
Confidence            55679999999999999988888776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	583
3hqi_A	312	Structures Of Spop-Substrate Complexes: Insights In		1e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-06
4eoz_A	145	Crystal Structure Of The Spop Btb Domain Complexed		4e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
4ap2_A	297	Crystal Structure Of The Human Klhl11-cul3 Complex		2e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-04
3i3n_A	279	Crystal Structure Of The Btb-Back Domains Of Human		6e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-04

>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPA--ALSRILQISLARSNMDHNIDNGI------ 323
           Y+ ++  D   K+FI +G  L E + L     L+   ++S+ + +++ +  N +      
Sbjct: 98  YRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVP 157
Query: 324 -CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGK 382
            C+L+  +  +  +       D C+ V  + F+ H+ +LA+RS  F A      +  E K
Sbjct: 158 ECRLADELGGLWENSR---FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESK 212
Query: 383 EGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAV 442
           +         +E +D+  E F++M+ ++YT    ++D   A+++  AA +Y L  LK   
Sbjct: 213 KNR-------VEINDVEPEVFKEMMCFIYTGKAPNLDK-MADDLLAAADKYALERLKVMC 264
Query: 443 ADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVI 481
            D L  +L + + AE+   LIL+D++   +++   ++ I
Sbjct: 265 EDALCSNLSVENAAEI---LILADLHSADQLKTQAVDFI 300

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
           D++A D +   PL          A+R G ++ ++ +LE+G +VNA+D+     L+ A   
Sbjct: 27  DVNAKDKNGRTPLHL--------AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 77  GHLDAARMLLESGAICSEHTFDGDR-CHYAALN--LKVRKLL 115
           GHL+  ++LLE+GA  +    +G    H AA N  L+V KLL
Sbjct: 79  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R +  +G +VNA D W    L+ A + GHL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71

>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 13/133 (9%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D C+ V  + F+ H+ +LA+RS  F A      +  E K+         +E +D+  E
Sbjct: 25  FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESKKNR-------VEINDVEPE 75
Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHW 461
            F++M+ ++YT    ++D   A+++  AA +Y L  LK    D L  +L + + AE+   
Sbjct: 76  VFKEMMCFIYTGKAPNLDK-MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI--- 131
Query: 462 LILSDMYGVFKVR 474
           LIL+D++   +++
Sbjct: 132 LILADLHSADQLK 144

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA+D++    LY A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA D   S  L+ A   GH +   +LL+ GA  +   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 97  FDG-DRCHYAALN--LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVL 153
            DG    H AA N  L++ ++L  Y A        Q A   T L   A+R  LE  EV+L
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNA----QDAYGLTPLHLAADRGHLEIVEVLL 133

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA D +    L+ A   GHL+   +LL++GA  +   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 97  FDGDR-CHYAAL--NLKVRKLLKAYEA 120
           F G    H AA   +L++ ++L  Y A
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGA 104

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA  +    +G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 100 DR-CHYAALN--LKVRKLL 115
               H AA N  L+V KLL
Sbjct: 69  RTPLHLAARNGHLEVVKLL 87

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +V A+D+  S  L+ A   GHL+  ++LLE+GA
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +V A+D+  S  L+ A   GHL+  ++LLE+GA
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63

>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 354 FRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD 413
           FR H+ VLA+ +EYF   LS    F E + G   ++     E     +T E +IEYMYT 
Sbjct: 65  FRAHRSVLAAATEYFTPLLS--GQFSESRSGRV-EMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 414 GLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKV 473
            ++ +      E+ + A R+LL  LK    + L   L + +   +     L+ MY + ++
Sbjct: 122 RIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS---LAHMYTLSQL 177
Query: 474 REYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDL 533
                ++I  NF       EF     TLP       F           I VD   +L + 
Sbjct: 178 ALKAADMIRRNFHKVIQDEEF----YTLP-------FHLIRDWLSDLEITVDSEEVLFET 226
Query: 534 REKWLEAEAAELDK 547
             KW++  A E ++
Sbjct: 227 VLKWVQRNAEERER 240

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA+D+     L+ A   GHL+   +LL++GA  +   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 97  FDGDRCHYAALNLKVRK 113
            DG    Y  L+L  R+
Sbjct: 78  KDG----YTPLHLAARE 90

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA+D+     L+ A   GHL+   +LL++GA  +   
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 97  FDGDRCHYAALNLKVRK 113
            DG    Y  L+L  R+
Sbjct: 66  KDG----YTPLHLAARE 78

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA+D+     L+ A   GHL+   +LL++GA  +   
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 97  FDGDRCHYAALNLKVRK 113
            DG    Y  L+L  R+
Sbjct: 66  KDG----YTPLHLAARE 78

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA D      L+ A + GHL+   +LL+ GA  +   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 97  FDGDR-CHYAAL 107
             GD   H AAL
Sbjct: 78  KMGDTPLHLAAL 89

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA D+  +  L+ A    HL+   +LL+ GA  + H 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 97  FDGDR-CHYAAL 107
            DG    H AAL
Sbjct: 78  NDGSTPLHLAAL 89

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D   +  L+ A  +GHL+   +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+  G+ DR++ +LE+G + NA D      L+YA   GH +  ++LL  GA  +   
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 97  FDGDR-CHYAALN--LKVRKLLKAYEARP 122
            DG    HYAA N   ++ KLL +  A P
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADP 96

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+  G+ DR++ ++E+G +VNA D      L+YA   GH +  ++L+  GA  +   
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 97  FDGDR-CHYAA 106
            DG    HYAA
Sbjct: 68  SDGRTPLHYAA 78

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G + NA D +    L+ A   GHL+   +LL +GA
Sbjct: 6  LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA 59

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEH 95
           + EA+RAG  D +R ++ +G +VNA D      L+ A ++GHL+   +LL+ GA + +  
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 96  TFDGDRCHYAAL--NLKVRKLLKAYEA 120
            +     H AA+  +L++ ++L  Y A
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGA 104

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNARD      L+ A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
           D++A D +   PL          A++ G ++ +  +L+ G +VNARD W    L+ A   
Sbjct: 39  DVNAMDDAGVTPLHL--------AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 77  GHLDAARMLLESGA 90
           GHL+   +LLE GA
Sbjct: 91  GHLEIVEVLLEYGA 104

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEH 95
           + EA+RAG  D +R ++ +G +VNA D+     L+ A   GHL+   +LL+ GA + +E 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 96  TFDGDRCHYAAL 107
            F     H AA+
Sbjct: 78  NFGITPLHLAAI 89

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA+D+     L+ A   GHL+   +LL++GA
Sbjct: 6  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+  G+ DR++ +LE+G +VNA D      L+ A   GH +  ++LL  GA  +   
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 97  FDGDR-CHYAALN--LKVRKLLKAYEARP 122
            DG    H AA N   +V KLL +  A P
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADP 96

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           AS  GD+  + Y+L++G + N +D      L+ AC  GHL    +LL+  A+ +   +  
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 100 DR-CHYAALN--LKVRKLLKAYEA 120
           D   H AA N  + + KLL +Y A
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL+ GA  +   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 97  FDGDR-CHYAAL 107
             G    H AAL
Sbjct: 78  IXGSTPLHLAAL 89

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 37  VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           + EA+  G+ DR++ ++E+G +VNA D      L++A   GH +  ++L+  GA  +   
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 97  FDGDR-CHYAALN 108
            DG    H+AA N
Sbjct: 68  SDGRTPLHHAAEN 80

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D+     L+ A +  HL+   +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71

>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 354 FRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE------TFEKMI 407
           FR H+ VLA+ +EYF   LS    F E + G        +E    S E      T E +I
Sbjct: 47  FRAHRSVLAAATEYFTPLLS--GQFSESRSGR-------VEXRKWSSEPGPEPDTVEAVI 97
Query: 408 EYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL--LLHL-EMVSPAELCHWLIL 464
           EY YT  ++ +      E+ + A R+LL  LK    + L   LHL   V+   L H   L
Sbjct: 98  EYXYTGRIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTL 156
Query: 465 SDM 467
           S +
Sbjct: 157 SQL 159

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          + EA+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL++GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	583
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-24
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	7e-11
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-21
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-10
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-20
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	5e-11
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	9e-20
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	2e-07
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	2e-17
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	2e-09
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	1e-15
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	2e-08
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	1e-15
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	6e-06
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	5e-15
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	3e-08
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	6e-15
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	4e-06
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	7e-15
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	5e-08
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	8e-15
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	5e-09
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	1e-14
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	1e-07
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	2e-14
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	1e-08
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	3e-14
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	9e-09
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	4e-14
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	1e-07
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	5e-14
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	6e-09
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	8e-14
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	5e-08
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-13
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	6e-08
2vpk_A	116	Myoneurin; transcription regulation, transcription	2e-13
2vpk_A	116	Myoneurin; transcription regulation, transcription	3e-08
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	3e-13
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-05
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	5e-04
2etb_A	256	Transient receptor potential cation channel subfam	7e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-04

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 15/152 (9%)

Query: 341 DLADVCVRVDKKIFRCHQVVLASRSEYFKARL-SRMKDFYEGKEGLPGDILPCIEEHDLS 399
              D C+ V  + F+ H+ +LA+RS  F A     M+   E K+         +E +D+ 
Sbjct: 33  RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME---ESKKN-------RVEINDVE 82

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC 459
            E F++M+ ++YT    ++D   A+++  AA +Y L  LK    D L  +L + + AE+ 
Sbjct: 83  PEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI- 140

Query: 460 HWLILSDMYGVFKVREYCLEVIACNFETFADS 491
             LIL+D++   +++   ++ I  +     ++
Sbjct: 141 --LILADLHSADQLKTQAVDFINYHATDVLET 170

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWR--YRNEIRFSREKLSYPALYGLIHFF 229
           D    V G+  +AH+ IL+ARS  F   FE +     +N +      +       ++ F 
Sbjct: 36  DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFI 93

Query: 230 YSDRLEIAVD------------DMEDLVKICKVCKCESLQRII 260
           Y+ +                   +E L  +C     ++L   +
Sbjct: 94  YTGKAPNLDKMADDLLAAADKYALERLKVMC----EDALCSNL 132

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 94.6 bits (235), Expect = 2e-21
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 341 DLADVCVRVDKKIFRCHQVVLASRSEYFKARL-SRMKDFYEGKEGLPGDILPCIEEHDLS 399
              D C+ V  + F+ H+ +LA+RS  F A     M+   E K+         +E +D+ 
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME---ESKKN-------RVEINDVE 222

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC 459
            E F++M+ ++YT    ++D   A+++  AA +Y L  LK    D L  +L + + AE+ 
Sbjct: 223 PEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI- 280

Query: 460 HWLILSDMYGVFKVREYCLEVIACNFE 486
             LIL+D++   +++   ++ I  +  
Sbjct: 281 --LILADLHSADQLKTQAVDFINYHAT 305

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D    V G+  +AH+ IL+ARS  F   FE +     + R     +       ++ F Y+
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235

Query: 232 DRLEIAVD------------DMEDLVKICKVCKCESLQRII 260
            +                   +E L  +C     ++L   +
Sbjct: 236 GKAPNLDKMADDLLAAADKYALERLKVMC----EDALCSNL 272

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 15/130 (11%)

Query: 341 DLADVCVRVDKKIFRCHQVVLASRSEYFKARL-SRMKDFYEGKEGLPGDILPCIEEHDLS 399
              D C+ V  + F+ H+ +LA+RS  F A     M+   E K+         +E +D+ 
Sbjct: 24  RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME---ESKKN-------RVEINDVE 73

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC 459
            E F++M+ ++YT    ++D   A+++  AA +Y L  LK    D L  +L + + AE+ 
Sbjct: 74  PEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI- 131

Query: 460 HWLILSDMYG 469
             LIL+D++ 
Sbjct: 132 --LILADLHS 139

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D    V G+  +AH+ IL+ARS  F   FE +     + R     +       ++ F Y+
Sbjct: 27  DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86

Query: 232 DRLEIAVD------------DMEDLVKICKVCKCESLQRII 260
            +                   +E L  +C     ++L   +
Sbjct: 87  GKAPNLDKMADDLLAAADKYALERLKVMC----EDALCSNL 123

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 88.0 bits (219), Expect = 9e-20
 Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D  + +D +     + +LA+ S Y + +L+      +G           IE   +S  
Sbjct: 31  FCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYK-------IELEGISVM 83

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC-H 460
              ++++Y+++  +  ++ D  +++  AA   LL  LK    + L   +     AE C  
Sbjct: 84  VMREILDYIFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA----AENCIG 138

Query: 461 WLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPP 503
               +  Y +  V     E +  +F   + + EF    L L P
Sbjct: 139 IRDFALHYCLHHVHYLATEYLETHFRDVSSTEEF----LELSP 177

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREK------LSYPALYGL 225
           D    + G  I   + IL+A S + R K   +    +              +S   +  +
Sbjct: 33  DAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDD----GSTYKIELEGISVMVMREI 88

Query: 226 IHFFYSDRLEIAVDDMEDLV---------KICKVCKCESLQRIIEKE--LIHQKYAEYKA 274
           + + +S ++ +  D ++D+V          +  +C CE L+  I  E  +  + +A +  
Sbjct: 89  LDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLC-CEFLEGCIAAENCIGIRDFALHYC 147

Query: 275 LRDVDNSQKRFILQ 288
           L  V      ++  
Sbjct: 148 LHHVHYLATEYLET 161

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 17/114 (14%)

Query: 342 LADVCVRV----DKKIFRCHQVVLASRSEYFKARL-SRMKDFYEGKEGLPGDILPCIEEH 396
           +ADV   V      +    H+ VLA  S  F A     +    E K          I   
Sbjct: 8   MADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLA---EVKS--------EIHIP 56

Query: 397 DLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL 450
           D+    F  +++YMY+D + D++ D       AA +Y++  L +A  + L   L
Sbjct: 57  DVEPAAFLILLKYMYSDEI-DLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 23/106 (21%)

Query: 172 DVVFYV----QGRPIEAHRVILSARSVFFRRKFETDWR-YRNEIRFSREKLSYPALYGLI 226
           DV F V      R + AH+ +L+  S  F   F  D    ++EI      +   A   L+
Sbjct: 10  DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHI--PDVEPAAFLILL 67

Query: 227 HFFYSDRLEIAVD------------DMEDLVKICKVCKCESLQRII 260
            + YSD +++  D             +  L K C       L+  +
Sbjct: 68  KYMYSDEIDLEADTVLATLYAAKKYIVPALAKAC----VNFLETSL 109

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D  + +D +     + +LA+ S Y + +L+      +G           IE   +S  
Sbjct: 47  FCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYK-------IELEGISVM 99

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
              ++++Y+++ G   ++ D  +++  AA   LL  LK    + L
Sbjct: 100 VMREILDYIFS-GQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYR--NEIRFSREKLSYPALYGLIHFF 229
           D    + G  I   + IL+A S + R K   +      +  +   E +S   +  ++ + 
Sbjct: 49  DAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYI 108

Query: 230 YSDRLEIAVDDMEDLV---------KICKVCKCESLQ 257
           +S ++ +  D ++D+V          +  +C CE L+
Sbjct: 109 FSGQIRLNEDTIQDVVQAADLLLLTDLKTLC-CEFLE 144

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 13/164 (7%)

Query: 341 DLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSK 400
           D+         + FR H+ VLA+ +EYF   LS    F E + G   ++     E     
Sbjct: 34  DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG--QFSESRSGRV-EMRKWSSEPGPEP 90

Query: 401 ETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELC- 459
           +T E +IEYMYT  +  +      E+ + A R+LL  LK    + L   L        C 
Sbjct: 91  DTVEAVIEYMYTGRI-RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH----LSNCV 145

Query: 460 HWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPP 503
               L+ MY + ++     ++I  NF       EF     TLP 
Sbjct: 146 AIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEF----YTLPF 185

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 172 DVV---FYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIR------FSREKLSYPAL 222
           D+        GR   AHR +L+A + +F       +      R       S        +
Sbjct: 34  DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTV 93

Query: 223 YGLIHFFYSDRLEIAVDDMEDLV---------KICKVCKCESLQRIIEKE--LIHQKYAE 271
             +I + Y+ R+ ++   + +++         ++ + C  E L++ +     +     A 
Sbjct: 94  EAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFC-GEFLKKKLHLSNCVAIHSLAH 152

Query: 272 YKALRDVDNSQKRFILQ 288
              L  +       I +
Sbjct: 153 MYTLSQLALKAADMIRR 169

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 328 SSVEAMHISDHVDD-------------LADVCVRVDKKIFRCHQVVLASRSEYFKARLSR 374
           S+   +  + H  D             L DV + V ++ FR H+ VL + S  F +  + 
Sbjct: 2   SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 61

Query: 375 MKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYL 434
                               + +++ E F  ++++MYT  L ++       +   A    
Sbjct: 62  --QLKRNLS-------VINLDPEINPEGFNILLDFMYTSRL-NLREGNIMAVMATAMYLQ 111

Query: 435 LFPLKRAVADVL 446
           +  +       +
Sbjct: 112 MEHVVDTCRKFI 123

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DVV  V      AH+ +L A S  F   F    +    +     +++      L+ F Y+
Sbjct: 31  DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYT 90

Query: 232 DRLEIAVDDMEDL 244
            RL +   ++  +
Sbjct: 91  SRLNLREGNIMAV 103

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             DV V V+ + FR H+ +L++ S YF    S                   +E   +  E
Sbjct: 31  FCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ--------------VVELSFIRAE 76

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAAS 431
            F +++ Y+Y+  +  +  D  +E+  +  
Sbjct: 77  IFAEILNYIYSSKIVRVRSDLLDELIKSGQ 106

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V+ R   AH+ ILSA S +F + F         +      +       ++++ YS
Sbjct: 33  DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVEL--SFIRAEIFAEILNYIYS 87

Query: 232 DRL-EIAVDDMEDL 244
            ++  +  D +++L
Sbjct: 88  SKIVRVRSDLLDEL 101

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L DV + V+ + FR H+ VLA+ S YF +R+       +G+              +++ +
Sbjct: 29  LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA---DGEL-------NITLPEEVTVK 78

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
            FE +I++ YT  L  +  +  +E+        +  ++ +    L
Sbjct: 79  GFEPLIQFAYTAKL-ILSKENVDEVCKCVEFLSVHNIEESCFQFL 122

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV  +V+G+   AHR +L+A S +F  +               E+++      LI F Y+
Sbjct: 31  DVTIFVEGQRFRAHRSVLAACSSYFHSRI-VGQADGELNITLPEEVTVKGFEPLIQFAYT 89

Query: 232 DRLEIAVDDMEDL 244
            +L ++ ++++++
Sbjct: 90  AKLILSKENVDEV 102

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 69.9 bits (172), Expect = 8e-15
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L DV + V+ + F  H+ VLA+ S+YFK   +        ++          E   +S E
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFT--SGAVVDQQ-------NVYEIDFVSAE 75

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
               ++++ YT  L  +      ++  AA    +  +    AD+L
Sbjct: 76  ALTALMDFAYTATL-TVSTANVGDILSAARLLEIPAVSHVCADLL 119

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DVV  V+GR    HR +L+A S +F++ F +      +  +  + +S  AL  L+ F Y+
Sbjct: 27  DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 86

Query: 232 DRLEIAVDDMEDL 244
             L ++  ++ D+
Sbjct: 87  ATLTVSTANVGDI 99

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
           D L DV + V++K FR H+ VLA+ SEYF   L                        +++
Sbjct: 30  DILCDVTLIVERKEFRAHRAVLAACSEYFWQALV--GQTKNDLV--------VSLPEEVT 79

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
              F  ++++ YT  L  +  +   E+   A    +  L+ +    L
Sbjct: 80  ARGFGPLLQFAYTAKL-LLSRENIREVIRCAEFLRMHNLEDSCFSFL 125

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V+ +   AHR +L+A S +F +      +    +    E ++      L+ F Y+
Sbjct: 34  DVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEE-VTARGFGPLLQFAYT 92

Query: 232 DRLEIAVDDMEDL 244
            +L ++ +++ ++
Sbjct: 93  AKLLLSRENIREV 105

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L DV V V+ + FR H+ VLA+ S YF +R+    D            L      +++ +
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD----------AELTVTLPEEVTVK 85

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL 450
            FE +I++ YT  L  +  D  +E+        +  ++ +    L    
Sbjct: 86  GFEPLIQFAYTAKL-ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V+G+   AHR +L+A S +F  +               E+++      LI F Y+
Sbjct: 38  DVTVLVEGQRFRAHRSVLAACSSYFHSRI-VGQTDAELTVTLPEEVTVKGFEPLIQFAYT 96

Query: 232 DRLEIAVDDMEDL 244
            +L ++ D+++++
Sbjct: 97  AKLILSKDNVDEV 109

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L DV + VD + F  H+ VLA  S+ F+    R                       LS +
Sbjct: 28  LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ--------------HYTLDFLSPK 73

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
           TF++++EY YT  L     +  +++  AA    +  L+     +L
Sbjct: 74  TFQQILEYAYTATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKML 117

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 52.6 bits (127), Expect = 9e-09
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DVV  V  +   AHR +L+  S  F   F  +           + LS      ++ + Y+
Sbjct: 30  DVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTL--DFLSPKTFQQILEYAYT 84

Query: 232 DRLEIAVDDMEDL 244
             L+   +D++DL
Sbjct: 85  ATLQAKAEDLDDL 97

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 68.0 bits (167), Expect = 4e-14
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D  + V   +F+ H  VLA  S +F++       + +G  G        +       E
Sbjct: 24  YCDATLDVGGLVFKAHWSVLACCSHFFQSL------YGDGSGG-------SVVLPAGFAE 70

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
            F  ++++ YT  L  +     +++  AA    +           
Sbjct: 71  IFGLLLDFFYTGHL-ALTSGNRDQVLLAARELRVPEAVELCQSFK 114

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D    V G   +AH  +L+  S FF+  +         +              L+ FFY+
Sbjct: 26  DATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVL----PAGFAEIFGLLLDFFYT 81

Query: 232 DRLEIAVDDMEDL 244
             L +   + + +
Sbjct: 82  GHLALTSGNRDQV 94

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L D  + V  + F  H +VLA  S+    R                          +S  
Sbjct: 30  LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW------------------ALGEGISPS 71

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
           TF +++ ++Y + + ++ P +   + +AA    +  L+ A     
Sbjct: 72  TFAQLLNFVYGESV-ELQPGELRPLQEAARALGVQSLEEACWRAR 115

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D +  V  +   AH ++L+  S    R+ +             E +S      L++F Y 
Sbjct: 32  DTLITVGSQEFPAHSLVLAGVSQQLGRRGQWA---------LGEGISPSTFAQLLNFVYG 82

Query: 232 DRLEIAVDDMEDL 244
           + +E+   ++  L
Sbjct: 83  ESVELQPGELRPL 95

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
             D  + V   +F+ H  VLA  S +F+                       +       E
Sbjct: 25  YCDATLDVGGLVFKAHWSVLACCSHFFQRIYG-------------DGTGGSVVLPAGFAE 71

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
            F  ++++ YT  L  +     +++  AA    +           
Sbjct: 72  IFGLLLDFFYTGHL-ALTSGNRDQVLLAAKELRVPEAVELCQSFQ 115

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D    V G   +AH  +L+  S FF+R +         +              L+ FFY+
Sbjct: 27  DATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVL----PAGFAEIFGLLLDFFYT 82

Query: 232 DRLEIAVDDMEDL 244
             L +   + + +
Sbjct: 83  GHLALTSGNRDQV 95

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
           L D    VD   F+ H+ VLA+ SEYFK      KD               +     +  
Sbjct: 27  LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD--------------VVHLDISNAA 72

Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFP 437
              +++E+MYT  L  + P+  +++   A+ +L   
Sbjct: 73  GLGQVLEFMYTAKL-SLSPENVDDVLAVAT-FLQMQ 106

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D  F V G   +AH+ +L+A S +F+  F      ++ +    +  +   L  ++ F Y+
Sbjct: 29  DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHL--DISNAAGLGQVLEFMYT 83

Query: 232 DRLEIAVDDMEDL 244
            +L ++ ++++D+
Sbjct: 84  AKLSLSPENVDDV 96

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARL-SRMKDFYEGKEGLPGDILPCIEEHDLSK 400
           L D  + + +  F+ H+ VLAS SEYF A   S  ++               +++  +  
Sbjct: 22  LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF------------LDQSQVKA 69

Query: 401 ETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFP 437
           + F+K++E++YT  L ++D    +E+  AA  YL   
Sbjct: 70  DGFQKLLEFIYTGTL-NLDSWNVKEIHQAAD-YLKVE 104

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           D    +     +AHR +L++ S +F   + +       +     ++       L+ F Y+
Sbjct: 24  DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQ--SQVKADGFQKLLEFIYT 81

Query: 232 DRLEIAVDDMEDL 244
             L +   +++++
Sbjct: 82  GTLNLDSWNVKEI 94

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 27/124 (21%)

Query: 327 SSSVEAMHISDHVDD-------------LADVCVRVDKKIFRCHQVVLASRSEYFKARLS 373
           S+    M I +  +                DV V V    F+ H+ VLA+ S YF+    
Sbjct: 5   SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRD--- 61

Query: 374 RMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRY 433
            +  F   +  +            +  ++F++++ + YT  L  ++    + +   A  +
Sbjct: 62  -L--FNNSRSAV------VELPAAVQPQSFQQILSFCYTGRL-SMNVGDQDLLMYTAG-F 110

Query: 434 LLFP 437
           L   
Sbjct: 111 LQIQ 114

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DV   V+G   +AHR +L+A S +FR  F      R+ +      +   +   ++ F Y+
Sbjct: 35  DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQPQSFQQILSFCYT 91

Query: 232 DRLEIAVDDMEDL 244
            RL + V D + L
Sbjct: 92  GRLSMNVGDQDLL 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 100/639 (15%), Positives = 192/639 (30%), Gaps = 160/639 (25%)

Query: 10  DAELDEIDL-DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDS 67
           DA +D  D  D  D   S+  K+  +  +          RL + L S    +  +   + 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 68  VALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARPPPLGP 127
           + + Y  L   +       +   +   +    DR +    N   +   K   +R  P   
Sbjct: 87  LRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLY----N-DNQVFAKYNVSRLQPYLK 139

Query: 128 LQAALRDTFLGCGANRQFLEEAEVVL-GISG-----VTSNGASNSD--SFPPDVVFYVQ- 178
           L+ AL           +      V++ G+ G     V  +   +          +F++  
Sbjct: 140 LRQAL----------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 179 GRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYG-LIHFFYSDRLEIA 237
                   V+   + + ++   + +W  R++   S  KL   ++   L     S   E  
Sbjct: 190 KNCNSPETVLEMLQKLLYQ--IDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 238 ---VDDMEDLVKI-------CK---------VCKCESLQRIIEKELIHQKYAEYKALRDV 278
              + ++++  K        CK         V    S        L H            
Sbjct: 247 LLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----- 300

Query: 279 DNSQKRFI----LQGSALPEE--DRLPAALSRI---LQISLARS-NMDH-NIDNGICKLS 327
           D  +   +     +   LP E     P  LS I   ++  LA   N  H N D     + 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 328 SSVEAMH---ISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEG 384
           SS+  +         D L+         +F                        +     
Sbjct: 361 SSLNVLEPAEYRKMFDRLS---------VFP--------------------PSAH----- 386

Query: 385 LPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRY----LLFPLKR 440
           +P  +L  +   D+ K     ++  ++   L +  P +        S      +   LK 
Sbjct: 387 IPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE--------STISIPSIYLELKV 437

Query: 441 AVADVLLLHLEMVS----PAELCHW---LILSDMYGVFKVREYCLEVIACNFETFADSRE 493
            + +   LH  +V     P             D Y  +    + L+ I  + E       
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIE-HPERMT---L 492

Query: 494 FRAMLLTLPPPSGDSSF-------RTTVPSAPGAIINVDQGNLLDDLR--EKWLEAEAAE 544
           FR + L       D  F        +T  +A G+I+     N L  L+  + ++     +
Sbjct: 493 FRMVFL-------DFRFLEQKIRHDSTAWNASGSIL-----NTLQQLKFYKPYICDNDPK 540

Query: 545 LDKRDESALMFDKRLEM---------LMQVAKDEKSEPI 574
            ++   + L F  ++E          L+++A   + E I
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           AS  GD+  + Y+L++G + N +D      L+ AC  GHL    +LL+  A+ +   +  
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 100 DR-CHYAALN--LKVRKLLKAYEA 120
           D   H AA N  + + KLL +Y A
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.3 bits (137), Expect = 7e-10
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           EA   G +  +  +L+    VN     +   L+ A   GH+D  ++LL  GA  +     
Sbjct: 49  EACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108

Query: 99  GDR-CHYAALN--LKVRKLLKAYEA 120
           G R   Y        +  L +  E+
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
           A++ G VD ++ +L  G + NA + +    + Y           +  ++ + 
Sbjct: 83  AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 56  GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAALN--LKVR 112
           G++    +      L+ A + G + +   LL++G+  +     G    H A  +  LKV 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 113 KLL 115
           +LL
Sbjct: 60  ELL 62

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
            +     SS   L          A+  G V+ +R +LE+G + NA +++    +    + 
Sbjct: 4   GIHMLGGSSDAGL--------ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM- 54

Query: 77  GHLDAARMLLESGAICSEHTFDGDRC--HYAALN--LKVRKLLKAYEARP 122
           G    A +LL  GA  +           H AA    L    +L    AR 
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.4 bits (132), Expect = 3e-09
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+R G +D L  +  +G  ++  D W  + +  A   GH D AR L  +  
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 56  GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAALN-LKVRK 113
              ++         L  A   G ++  R LLE+GA  +     G R      +   +V +
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAE 61

Query: 114 LL 115
           LL
Sbjct: 62  LL 63

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            +  G++  L   +E    +N  D+     L +A   G +     LL++GA         
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 100 DRC-HYAALN--LKVRKLL 115
           +     A       + K+L
Sbjct: 70  ESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A   G  D ++ +L+ GV+VN  D      L YA    H+   +MLLESGA  +  T  G
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135

Query: 100 DRC-HYAALN--LKVRKLLKAYEA 120
                 A       V+++++++  
Sbjct: 136 YNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 8e-09
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G +  + ++L++G +     +    AL  AC  G+ D  +MLL+ G     + +D 
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV--DVNEYDW 100

Query: 100 DRC---HYAALN--LKVRKLL 115
           +      YA     +K  K+L
Sbjct: 101 NGGTPLLYAVHGNHVKCVKML 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.1 bits (139), Expect = 6e-10
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G V+ +R +LE+G N NA + +    +    + G    A +LL  GA  +      
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPAT 77

Query: 100 DRC--HYAALN--LKVRKLLKAYEARP 122
                H AA    L    +L    AR 
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G +D L  +  +G  ++ RD W  + +  A   GH D AR L  +          G
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-----GTRG 139

Query: 100 -DRCHYAALN 108
            +     A  
Sbjct: 140 SNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 53  LESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL-NLK 110
           +E     +     D   L  A   G ++  R LLE+GA  +     G R      + + +
Sbjct: 1   MEPAAGSSMEPSAD--WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58

Query: 111 VRKLL 115
           V +LL
Sbjct: 59  VAELL 63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 6e-10
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+RAG  +  +Y+L++   VNA+ + D   L+ A   GH +  ++LLE+ A  +  T  G
Sbjct: 54  AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    ++    L
Sbjct: 114 HTPLHIAAREGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G  + +  +L    N N  ++     L+     GH+  A +L++ G +    T  G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 100 DRC-HYAALN--LKVRKLL 115
               H A+    +K+ K L
Sbjct: 312 YTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G  + ++ +LE+  N N         L+ A   GH++    LLE  A  +  T  G
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    ++V +LL
Sbjct: 147 FTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           AS  G++  ++++L+   +VNA+ +     L+ A   GH D   +LL++GA  +E + DG
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377

Query: 100 DRC-HYAALN--LKVRKLLKAYEA 120
                 A     + V  +LK    
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 8e-09
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
             +A+  +   PL          A    ++D ++ +L  G + ++        L+ A   
Sbjct: 171 HPNAAGKNGLTPL--------HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ 222

Query: 77  GHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVRKLL 115
             ++ AR LL+ G   +  +  G    H AA     ++  LL
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.3 bits (137), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            ++ G V     +++ GV V+A  +     L+ A   G++   + LL+  A  +  T  G
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA      +  LL
Sbjct: 345 YSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           AS  G +  ++ +L+ G + N  +      L+ A  AGH + A+ LL++ A +   +   
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV---NAKA 77

Query: 99  GDRC---HYAALN--LKVRKLL 115
            D     H AA      + KLL
Sbjct: 78  KDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++   V+  R +L+ G + NA        L+ A   GH +   +LL   A  +     G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 100 DRC-HYAALN--LKVRKLL 115
               H  A    + V  +L
Sbjct: 279 LTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 4e-08
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G V     +LE   + NA  +     L+ A    +LD  ++LL  G   S H+   
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAW 210

Query: 100 DRC---HYAALN--LKVRKLL 115
           +     H AA    ++V + L
Sbjct: 211 NGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.0 bits (131), Expect = 7e-08
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G V+ +  +LE   +     +     L+ A   G +  A +LLE  A  +    +G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 100 DRC-HYAALN--LKVRKLL 115
               H A  +  L + KLL
Sbjct: 180 LTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 56  GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVR 112
           G++     +     L+ A   GHL   + LL+ GA  +      +   H AA     +V 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 113 KLL 115
           K L
Sbjct: 64  KYL 66

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.0 bits (139), Expect = 8e-10
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           AS  G  D +  +LE  V++N  D      L YA    H+     LL  GA  +     G
Sbjct: 76  ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135

Query: 100 DRC-HYAALN--LKVRKLLKAYEA 120
                 A      KV+++++ +  
Sbjct: 136 YTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVN-VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
            +  G++D+L+  L  G N VN  D+     L +A   G ++  R LLE GA       +
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 99  GDRC-HYAALN--LKVRKLL 115
            +     A+      +  LL
Sbjct: 69  RESALSLASTGGYTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           AS  G+++ +R++LE G + +   +    AL  A   G+ D   +LLE    I      D
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY---D 99

Query: 99  GDRC---HYAALN--LKVRKLL 115
            +      YA     +K  + L
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEAL 121

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 38  FEASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           F   R G+   +R  L++   ++N  D      L++AC  G      ML+  GA  +   
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69

Query: 97  FDGDRC-HYAALN--LKVRKLL 115
              D   H AA +    + + L
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.4 bits (132), Expect = 9e-09
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G  D ++ +L+   ++NA ++  +V L+YAC  G    A  L+ +GA+ S     G
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

Query: 100 DR-CHYAALN--LKVRKLL 115
           +     A       +R+  
Sbjct: 139 EMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A R G    +  ++  G  +N  ++ D   L+ A   GH D  + LL+  A    +  + 
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA--DINAVNE 103

Query: 100 DRC---HYAALN--LKVRKLL 115
                 HYA      +V + L
Sbjct: 104 HGNVPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 6/51 (11%), Positives = 16/51 (31%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A   G       ++ +G  V+  +++  + +  A             + G 
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A+RAG  D +R ++ +G +V A+D+  S  L+ A   GHL+  ++LLE+GA + ++  F 
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90

Query: 99  GDRCHYAALN--LKVRKLLK 116
                 +  N    + ++L+
Sbjct: 91  KTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            S          ++  G ++ +        L  A  AG  D  R+L+ +GA  +    +G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLGK---KLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 100 DRC---HYAALN--LKVRKLL 115
                 H AA N  L+V KLL
Sbjct: 58  --STPLHLAARNGHLEVVKLL 76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A + GD+D ++  +  G +VN   +     L+YA   G L+    LL  GA I +    D
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP---D 70

Query: 99  GDRC---HYAALN--LKVRKLL 115
                    A     +   KLL
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G ++ L ++L  G ++NA D+     L  A   GH+   ++LL  GA  +    DG
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 100 DRC-HYAALNLKVRKLLK 116
                       ++ LL+
Sbjct: 107 LTAFEATDNQ-AIKALLQ 123

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA  +    +G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA N  L+V KLL
Sbjct: 69  RTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.7 bits (120), Expect = 6e-08
 Identities = 20/51 (39%), Positives = 35/51 (68%)

Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 3e-09
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G  +R R ++E+G +V   D+ +   L++A +   +D  +  +  GAI  +   D 
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 100 DRC--HYAALN--LKVRKLL 115
           +    H+A     L +   L
Sbjct: 76  NSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 50  RYILESGVNVNARDQWD-SVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL 107
           R +L   V+VN  D++  + AL++A LAG+     +LLE+GA        G+     A  
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219

Query: 108 N--LKVRKLLKAYEA 120
              + +   L+    
Sbjct: 220 RKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQ-WDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A+    +D ++Y +  G  V+      +S  L++A   GHL     L++ GA  S    +
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G  C H AA      +   L
Sbjct: 109 GCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A  AG+   +  +LE+G NV+A++     AL  A    ++     L E+  
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 58  NVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVRKL 114
           ++   D + +  +  A   G  +  R L+E+G    +   +     H+AA+N  + + K 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 115 L 115
            
Sbjct: 61  Y 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G +  +  +++ G + +  D      ++ A   GH      L+  G        +G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 100 DRC-HYAALN---LKVRKLL 115
                +AA     +   +LL
Sbjct: 143 MTPLMWAAYRTHSVDPTRLL 162

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           EA+  G    LR ++  G  VN         L+ ACL GHL   ++LL+ GA  +  T D
Sbjct: 65  EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124

Query: 99  GDRC-HYAALN--LKVRKLL 115
                  A ++       LL
Sbjct: 125 WHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           EA+R G V+ +  ++  G N++ +       LY AC        + LLESGA
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 9e-08
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           EA   G +  ++ +L+ G  VN         L+ AC++G  D   +LL+ GA     + D
Sbjct: 98  EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-D 156

Query: 99  GDRC-HYAALN--LKVRKLL 115
                H AA    ++    L
Sbjct: 157 LASPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A        ++ +LESG +VN     DS  L+        + A +L++ GA       +G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQDS-PLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 100 DRC-HYAALNLKVRKLL 115
            R          + +L 
Sbjct: 256 KRPVELVPPESPLAQLF 272

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 38  FEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           F A  +G  D +  +L+ G +V       S  ++ A   GH++    L+  G        
Sbjct: 130 FNACVSGSWDCVNLLLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKIS 188

Query: 98  DGDR-CHYAALN--LKVRKLL 115
                 + A  N      K L
Sbjct: 189 HLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 22/110 (20%)

Query: 11  AELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVAL 70
           + +  +D        S P               G       +L + +  +A   W    +
Sbjct: 19  SHMASMDGKQGGMDGSKPA--------GPRDFPG-----IRLLSNPLMGDAVSDW--SPM 63

Query: 71  YYACLAGHLDAARMLLESGAICSEHTFDGDRC---HYAALN--LKVRKLL 115
           + A + GH  + R L+  G   + +    D     H A L   L   K+L
Sbjct: 64  HEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GA 90
             R    +    +++ G +  A++      +        L    + LE  GA
Sbjct: 229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ--LFLEREGA 278

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.5 bits (130), Expect = 5e-09
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA  +    +G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA N  L+V KLL
Sbjct: 69  RTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.0 bits (121), Expect = 9e-08
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA  +    +G
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA N  L+V KLL
Sbjct: 102 RTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 35/51 (68%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+R G ++ ++ +LE+G +VNA+D+     L+ A   GHL+  ++LLE+GA
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 12  ELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALY 71
           +  +++   SD  +   +          A+R G  D +R ++E+GV+   ++++   AL+
Sbjct: 7   DFPKLNRIKSDDENMEKI--------HVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH 58

Query: 72  YACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVRKLL 115
            AC  G +D A+ L   G + S     G +  H A +     +   L
Sbjct: 59  LACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 11/100 (11%), Positives = 22/100 (22%), Gaps = 3/100 (3%)

Query: 9   IDAELDEIDLDASDFSSSVPLKKVPNGDVFE--ASRAGDVDRLRYILESGVNVNARDQWD 66
           +      +       + +  L        F   A+     + L+ + E    V       
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTG 323

Query: 67  SVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYA 105
           +               RM L   A     +    R    +
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA---ICSEHT 96
           A      D     +E G++VN  D   +V LY +  A  +   + LL+      I +   
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 97  FDGDRC-----------HYAALN--LKVRKLL 115
            +G                AA     +V +LL
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A + G VD  +Y+   G   +         ++ A +A   D    L+E   
Sbjct: 60  ACKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAK 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 11/84 (13%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 40  ASRAGDVDRLRYILES-----GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
           A    + + L  ++++      + ++  ++  +  L++A L    D A   +E G   + 
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 95  HTFDGDRC-HYAALN--LKVRKLL 115
              +     + +     + + K L
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 40  ASRAGD--VDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
               G   ++ ++ +++ G +  A+D+ D   L  A    + +A  +++++    S+ + 
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP--SKSSL 202

Query: 98  DGDRC--------HYAALN--LKVRKLL 115
             D          H+A L     V    
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRF 230

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 13/82 (15%), Positives = 26/82 (31%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G+   +  +  +G  V   ++    AL+ AC       A +LL+          D 
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 100 DRCHYAALNLKVRKLLKAYEAR 121
                            A +++
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQ 133

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A  A     L  +L++G +  AR       L  A L  +   AR+L   GA   E   D 
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 100 DR-CHYAALN--LKVRKLLKAYE 119
              C  +  +     R     Y+
Sbjct: 259 LSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 40  ASRAGDVDRLRYILESGVN---VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           A        L ++L        ++ ++     AL+ A + G       L  +GA      
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 97  FDGDRC-HYAALN--LKVRKLL 115
             G    H A          +L
Sbjct: 76  RGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 5/110 (4%)

Query: 11  AELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVA 69
                   D     S        +      S+    +      E   + + A +      
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 70  LYYACLAGHLDAARMLLESGAICSEHTFDGDRC--HYAALN--LKVRKLL 115
           L+ A +    +  R+L ++GA  ++      R   H A       V +LL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A    D + +R + ++G ++N  +       L+ A  A       +LL++GA  +   + 
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 99  GDRC-HYAALN--LKVRKLLKAYEA 120
           G      A L     + +LL+A+ A
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGA 249

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL-ESGAICSEHTFD 98
           A++ G++  LR  L++ V VN  D+  S ALY+AC  GH D   ML  +     ++    
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 99  GDRC-HYAALN--LKVRKLLKAYEARP 122
           GD   H AA      + +LL A  AR 
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGART 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 10/61 (16%), Positives = 22/61 (36%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G  D ++ +L  G   + R+    +A   A  A      +    + A+ +    + 
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 100 D 100
            
Sbjct: 207 Y 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            +  G        L     V  + +     L+ A   G+L   R  L++    +     G
Sbjct: 52  GTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 100 DRC-HYAALN--LKVRKLL 115
               ++A       + ++L
Sbjct: 107 STALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 22/93 (23%), Gaps = 10/93 (10%)

Query: 28  PLKKVPNGD--VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
           P K V  G   VF A    +      +     ++           +     G        
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG----- 59

Query: 86  LESGAICSEHTFDGDRC-HYAALN--LKVRKLL 115
           L      +E     D   H AA    L   +  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.7 bits (133), Expect = 1e-08
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+ AG VD    ++++G N++   +     L  A    HL+A + L+++GA+      +G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 100 DRC-HYAALN--LKVRKLL 115
             C H AA     +V + L
Sbjct: 78  STCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+    VD ++ +L  G ++N RD  +++ L++A  +G +D A +LL +          G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 100 DRC-HYAALN--LKVRKLL 115
           D   H AA         L 
Sbjct: 178 DSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.1 bits (121), Expect = 5e-07
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+    ++ ++Y++++G  V+ +D   S  L+ A   GH +  + LL +G +      D 
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DD 109

Query: 100 DRC---HYAALN--LKVRKLL 115
                  +A     + + KLL
Sbjct: 110 GGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 7e-07
 Identities = 19/80 (23%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A++ G  + ++Y+L +G ++VN +D      + +A    H+D  ++LL  G+  +    +
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 99  GDRC-HYAALN--LKVRKLL 115
            + C H+AA +  + + ++L
Sbjct: 144 ENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.3 bits (119), Expect = 9e-07
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+ +G VD    +L +  +++A +      L+ A      D   + L   +  +    +G
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG 210

Query: 100 DR-CHYAALN--LKVRKLLKAYEA 120
           +     A+LN  +     +     
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 57  VNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFDGDRC---HYAALN--LK 110
           +N     Q     L+ A  AGH+D   ML+++GA I    T   D+      AA N  L+
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLE 58

Query: 111 VRKLL 115
             K L
Sbjct: 59  AVKYL 63

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTF 97
            A  +GD + +  +LE G ++N  +     AL+ AC+  ++D  + L+E+GA I      
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP--- 102

Query: 98  DGDRC---HYAALN--LKVRKLL 115
           D +     H AA    L + + L
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G  + L+ ++++  +VN +D      L+ A   G  +A R+L+E+          G
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 100 DRC-HYAALN 108
                 A  +
Sbjct: 266 QTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A    +VD +++++E+G N+N  D    + L+ A   G+LD A  L+  GA       +G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 100 DR-CHYAALN--LKVRKLL 115
           D     A      ++ +  
Sbjct: 140 DTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G +D   Y++  G +V A +      L  A      +  +  +    +      D 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DI 166

Query: 100 DRCHYAA---LNLKVRKLLKAYEA 120
           +         +    R+ L +   
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
               G    L   +        +   D      AC +G  +    LLE GA  +    DG
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 100 DRC-HYAALN--LKVRKLL 115
               H A ++  + + K L
Sbjct: 74  LTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           E  R    D  +++    +N     +    AL+ A   G+ +  ++L+++    +   +D
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD 231

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H AA     +  ++L
Sbjct: 232 GWTPLHAAAHWGKEEACRIL 251

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G  + ++ +L  G +VNAR +  +  L+ A   GH +  ++LL  GA  +  + DG
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 100 DRC-HYAALN--LKVRKLL 115
           +   H A  N   ++ KLL
Sbjct: 76  NTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          A++ G  + ++ +L  G +VNAR +  +   + A   GH +  ++L   GA
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 56  GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVR 112
           G    ++D      L+ A   GH +  + LL  GA  +  + DG+   H AA N   ++ 
Sbjct: 1   GHMWGSKDGN--TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 113 KLL 115
           KLL
Sbjct: 59  KLL 61

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A+  GDV  +R +L    V+ +A +++   AL      G    A  LL+ GA  S +  D
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA--SPNVQD 65

Query: 99  GDRC---HYAALN--LKVRKLL 115
                  H AA    L   K+L
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 50  RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC---HYAA 106
             +L+ G + N +D   +  ++ A   G LD  ++L+E GA  +    DG      H A 
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP--DGTGALPIHLAV 109

Query: 107 LN--LKVRKLL 115
                 V   L
Sbjct: 110 QEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R G +D L+ ++E G +VN  D   ++ ++ A   GH      L  + +        G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133

Query: 100 DR-CHYAALN--LKVRKLL 115
                 A       +  +L
Sbjct: 134 LTPLELALQRGAQDLVDIL 152

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+    V  ++ +L+ G +V+A+D+   V L+ AC  GH +   +LL+ GA  +      
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    ++V  LL
Sbjct: 125 FTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A   G  +    +L+ G  VNA D W    L+ A     ++   +LL  GA  +     G
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157

Query: 100 DRC-HYAALN--LKVRKLLKAYEARPPPLGPLQAA 131
                 A      +         +       LQAA
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS------LLQAA 186

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+     D +  + + G  +NA D     AL+ A LAGHL   R+LL  G+  S  +  G
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313

Query: 100 DRC---HYAALNLKVRKLL 115
                         V+++L
Sbjct: 314 --FTAAQMGNEA--VQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRL-RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A+R+G+ ++L   +    VN +A D   S  L+ A     +   ++LL+ GA        
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H A      +V +LL
Sbjct: 91  GLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 40  ASRAGDVDRL---RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
           A  +    R      +L  G NVN +++     L+ A    H D   +L + GA  +   
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 97  FDGDRC-HYAALN--LKVRKLL 115
             G    H AAL   L+  +LL
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH---LDAARMLLESGAICSEHT 96
           A+R  D+ +++  L   +    + Q    AL+ A  + H      A +LL  GA  +E  
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 97  FDGDRC-HYAALN--LKVRKLL 115
            D     H AA      V ++L
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 12/79 (15%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           EA+    V+    +L  G +    +     A+  A      +      +  ++       
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL------- 182

Query: 99  GDRCHYAALN--LKVRKLL 115
                 A      KV+K L
Sbjct: 183 ---LQAAREADLAKVKKTL 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+   D   ++ +L SG++ +  D   + ALYYA  +G++   ++ ++       +   G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 100 DRC--HYAALN--LKVRKLL 115
            +   ++A +   + +    
Sbjct: 129 WKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQ--WDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           A  +G++  ++  ++    +    +  W + + Y+A +   +      L      +    
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKT-SFYHAVMLNDVSIVSYFLSEIPS-TFDLA 159

Query: 98  DGDRC-HYAALN--LKVRKLL 115
               C H    N  + +  LL
Sbjct: 160 ILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A    +V  +  +L +G   N  +  +   L+ A         ++LL SG   S+    G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 100 DRC-HYAALN--LKVRKLL 115
           +   +YA  +  ++  KL 
Sbjct: 96  NTALYYAVDSGNMQTVKLF 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
                   +L+  L S  +    D     A YYA    ++     LL +GA   ++  + 
Sbjct: 6   RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA--LKNLLEN 62

Query: 100 DR-CHYAALN--LKVRKLL 115
           +   H AA     K+ K+L
Sbjct: 63  EFPLHQAATLEDTKIVKIL 81

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQW-DSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
             + G VD +  +L+   + N  +       +  A     ++  + L +          +
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-------N 220

Query: 99  GDRC-HYAALN--LKVRKLL 115
                    L    ++ K++
Sbjct: 221 IYSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A    DV  + Y L                ++     GH+D   +LL+     + +    
Sbjct: 136 AVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 100 DRC--HYAALN--LKVRKLL 115
                  A  N  +++ + L
Sbjct: 195 FIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A    D++ L+ + +  +N+ +       A     L    + A+M++E   
Sbjct: 202 AIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEKHV 245

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 39  EASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           EA++AGDV+ ++ +     VN    +   S  L++A     +     LL+ GA       
Sbjct: 14  EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73

Query: 98  DGDRC-HYAALN--LKVRKLL 115
            G    H A      +V +LL
Sbjct: 74  GGLVPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A+    V  + Y+L+ G +V+A+D+   V L+ AC  GH + A +L++ GA +      D
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA---D 105

Query: 99  GDRC---HYAALN--LKVRKLL 115
             +    H AA     ++ KLL
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A   G  +    +++ G  VN  D W    L+ A   G  +  ++LL+ GA  ++   DG
Sbjct: 82  ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141

Query: 100 DRC-HYAALN-LKVRKLLKAYEA 120
           +            ++ LL+   A
Sbjct: 142 NTPLDLVKDGDTDIQDLLRGDAA 164

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A  AG  + ++++++ GVNVNA D      L+ A    ++   + L+ESGA + +    D
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD 136

Query: 99  GDRC---HYAALN--LKVRKLLKAYEA 120
                           +  + L   + 
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           +S  G+ D ++ I+    + +  +     AL+ A  AGH +  + L++ G   +    DG
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    ++V K L
Sbjct: 104 WTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 4/79 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
             R          +  G+ V          L  + L G  D  + ++      S    +G
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 100 DRC-HYAALN--LKVRKLL 115
               H A      ++ K L
Sbjct: 71  ITALHNAVCAGHTEIVKFL 89

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.0 bits (126), Expect = 5e-08
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+RAG  D +R ++ +G +VNA D      L+ A   GHL+   +LL++GA  +     G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80

Query: 100 DRC-HYAALN--LKVRKLL 115
                 AAL   L++ ++L
Sbjct: 81  MTPLRLAALFGHLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G ++ +  +L++G +VNA D      L  A L GHL+   +LL++GA  + +  D 
Sbjct: 54  AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN--DM 111

Query: 100 DRC---HYAALN--LKVRKLL 115
           +     H AA+   L++ ++L
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G ++ +  +L++G +VNA D      L+ A + GHL+   +LL++GA  +     G
Sbjct: 87  AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146

Query: 100 DRC-HYAALN--LKVRKLL 115
                 +  N    + ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87
           A+  G ++ +  +L++G +VNA+D++   A   +   G+ D A +L +
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGAICSEHTFD 98
           AS  G +  +  ++  G +VNA++  +   AL+ A    + D   +LL+ GA  +  T+ 
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 99  GDR-CHYAALN--LKVRKLLKAYEA 120
           G             ++++ L     
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH---- 95
           A      +    +L +G +   RD   +  L+ AC  G L +  +L +S      H    
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 96  --TFDGDRC-HYAALN--LKVRKLL 115
              ++G  C H A+++  L + +LL
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A    + D +  +L+ G +VN                      + L +      +   + 
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 100 -DRCHYAALN 108
            D   Y   +
Sbjct: 218 EDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 41  SRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
            +A  ++ +R +      +N ++      L+ A +    + A  LL +G       F G+
Sbjct: 20  EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN 79

Query: 101 RC-HYAALN--LKVRKLLKAYEARPPPLGPLQA 130
              H A     L    +L      P     L+A
Sbjct: 80  TPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 40  ASRAGDVDRLRYILESGVN------VNARDQWDSVALYYACLAGHLDAARMLLESGA-IC 92
           A   G +  +  + +S         + A +      L+ A + G+L    +L+  GA + 
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 93  SEHTFDGDRC-HYAALN--LKVRKLL 115
           ++   +G    H A       +  LL
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLL 170

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGA-ICSEHTF 97
           A +  DVD ++ +LE G NVN +++      L+ A      D   +LL  GA        
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLR 68

Query: 98  DGDRC---HYAALN--LKVRKLL 115
             +       AA+   +K+ KL 
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 3e-07
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+ AG V  L+  L  G +VN  D +   A   A + G + A + L + GA  +      
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 100 DRC-----------HYAALN--LKVRKLL 115
           +               AA    ++V K+L
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 6e-07
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A +    D +  +L  G +   R +  +     A +AG +   ++ L  GA  +E  F G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 100 DRC-HYAALN--LKVRKLL 115
                 AA+   +K  K L
Sbjct: 106 FTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 40  ASRAGDVDRL----RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH 95
           A  + D   +      +L+ G +VN R +     L  A    HL   + LLE   I    
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 96  TFDGDRC---HYAALN--LKVRKLL 115
           T D D       A      K+ +LL
Sbjct: 249 T-DSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 40  ASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A     +  ++ +LE   + +N  D     AL  A        A +L + GA
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 17  DLDASDFSSSVPLKKVPNGDV--FEASRAGDVDRLRY-ILESGVNVNARDQWDSVALYYA 73
           +++    +     +    G     +A+  G V+ L+  + E G +VNA D     AL +A
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

Query: 74  CLAGHLDA----ARMLLESGA-ICSEHTFDGDRC---HYAALN--LKVRKLL 115
            L+           +LL+ GA +   +            A     L + + L
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADV---NVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSV----------ALYYACLAGHLDAARMLL-E 87
           EA+  G V  L+++ + G NVN R +              AL  A   GH++  ++LL E
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

Query: 88  SGAICSEHTFDGDRC-HYAALN 108
            GA  +     G     +A L+
Sbjct: 171 MGADVNACDNMGRNALIHALLS 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           +A+  G+++ ++  ++   + +  ++    AL+ A    +      L+ +GA  +     
Sbjct: 27  DAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H AA      +   L
Sbjct: 87  GWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A    +   + +++ +G NVN+ D      L+ A           L++ GA
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 50  RYILESGVNVNARDQWD---SVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYA 105
           R +L    +     +      V L  A L G L+  +  ++     S+   +G    H A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 106 ALN--LKVRKLL 115
                  +   L
Sbjct: 62  ICGANYSIVDFL 73

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 40  ASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTF 97
           A    +  +++ +L S    +  +DQ   + L+++      +    LL     +  +   
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 98  DGDRC---HYAALN--LKVRKLL 115
           D       H A     L+V K L
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 40  ASRAGDVDRLRYILE--SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           A   G+++ ++ + +     ++N         L+ A      + ++ L+E+GA       
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 98  DGDRC-HYAALN--LKVRKLL 115
                 H AA    LK+ +LL
Sbjct: 139 FNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A      +  ++++E+G +V  +D+++ + L+ A   G L    +L   G        D 
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DK 172

Query: 100 DRC---HYAALN--LKVRKLL 115
                  +A          LL
Sbjct: 173 QGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV---ALYYACLAGHLDAARMLLE--SGAICSE 94
           +      +   ++L    NVN  D  D       + AC  G+L+  + L +       ++
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 95  HTFDGDRC-HYAALN--LKVRKLL 115
            T  G  C H A      +V + L
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 40  ASRAGDVDRLRYILESGVN-VNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTF 97
           A+  G +  +  +   G + VN +D+     L++A   GH DAA +L+E  GA       
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

Query: 98  DGDRC-HYAALNLKVRKLL 115
            G +    A  N +V+K  
Sbjct: 207 KGAKAEDVAL-NEQVKKFF 224

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++         + ++   V+  D   +  L  A     ++ A+ L++ GA  +      
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 100 DRC-HYAALN--LKVRKLL 115
           D    YA      ++   +
Sbjct: 73  DSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A    D++  + +++ G ++N ++        YA   G  +    +L+          + 
Sbjct: 46  AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NR 104

Query: 100 DRC---HYAALN--LKVRKLL 115
                   AA    +   KLL
Sbjct: 105 YGGNALIPAAEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 40  ASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A   G  + L Y+L+    ++N  +++   AL  A   GH+D  ++LLE G 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWD-SVALYYACLAGHLDAARMLLESGAICSEHTFD 98
            +  G    +R + E+G +++ RD      AL+ A      +    L+E GA        
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142

Query: 99  GDRC-HYAALN--LKVRKLLKAYEAR 121
           G      A        +     +  R
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+R  D   L  +LE   +V+A D+    AL +    G     R+L E+GA
Sbjct: 51  AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
             + G             +V +  +      + A       A   LLE   + +    D 
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLEDRDVDAV---DE 74

Query: 100 DRC---HYAALN--LKVRKLL 115
           +      + A     K  +LL
Sbjct: 75  NGRTALLFVAGLGSDKCVRLL 95

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+RAG  D +R ++ +G +VNA+D++    LY A   GHL+   +LL++GA  +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    L++ ++L
Sbjct: 81  FTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G ++ +  +L++G +VNA D      L+ A   GHL+ A +LL+ GA  +     G
Sbjct: 54  ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113

Query: 100 DRC-HYAALN--LKVRKLL 115
                 +  N    + ++L
Sbjct: 114 KTAFDISIGNGNEDLAEIL 132

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+RAG +D L+ +LE   +VN  D   ++ L+ A   GHL     L++  A    H  + 
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR-NH 135

Query: 100 DRC---HYAALN--LKVRKLL 115
                   A L    +V  L+
Sbjct: 136 KGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.9 bits (118), Expect = 4e-07
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  GD+++L  +L++ VNVNA++ +   AL    L G+ + AR LL  GA        G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70

Query: 100 DRC-HYAALN--LKVRKLL 115
               H AA    L   + L
Sbjct: 71  FAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 50  RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN 108
           R +L  G N + +D+     ++ A  AG LD  + LLE  A  +    +G+   H AA  
Sbjct: 54  RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113

Query: 109 --LKVRKLL 115
             L+V + L
Sbjct: 114 GHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 40  ASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A++ G +  + ++++    NV  R+     A   A L G  +   ++  +GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A        +R ++ +G +  A D+    A + AC        R LL+S A  +      
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 100 DRC-----HYAALN--LKVRKLL 115
           +       H A      +  +LL
Sbjct: 113 NYDGLTALHVAVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.1 bits (121), Expect = 5e-07
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 40  ASRAGDVDRLRYILE----SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH 95
           A   G++  +  ++      G  ++  +      L+ A +       R+L+ +GA     
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 96  TFDGDRC-HYAALN--LKVRKLL 115
              G    H A  +      + L
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A     +  ++ +L+ G NVNA+    S AL+ A   G L   R L+ SGA  S      
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216

Query: 100 DR-CHYAALN--LKVRKLLKAYEA 120
           D     A     + + +      A
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWD-SVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A      + ++ +LE G +++A D       L +A     L   ++LL+ GA  +   + 
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H A+    L + + L
Sbjct: 183 GSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 40  ASRAGDVDRLRYILESG----VNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSE 94
           A        LR +L+S     +++ AR+     AL+ A      +  ++LLE GA I + 
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 95  HTFDGDRC-HYAALN--LKVRKLL 115
               G     +A  N  L + +LL
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLL 169

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 17  DLDASDFSSSVPLKK-VPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACL 75
           D+ A      + + K + N  V E         +    +SG+ +  +D+W   AL +   
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI--FSQSGLQLLIKDKWGLTALEFVKR 163

Query: 76  AGHLDAARMLLESGA 90
                A +M+ +   
Sbjct: 164 CQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 4/75 (5%)

Query: 38  FEASRAGDVDRLRYILESGVNVNARDQWDSV---ALYYACLAGHLDAARMLLESGAICSE 94
             A+  G  +    + E G          ++    L           +  L+  GA    
Sbjct: 11  SAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 95  HTFDGDRC-HYAALN 108
            T +G          
Sbjct: 71  RTKEGTTLFFPLFQG 85

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 43  AGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD---G 99
            G  +  +  LE G ++ A  +   + ++       +D   M+     I S+        
Sbjct: 91  TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150

Query: 100 DRC-----HYAAL--NLKVRKLLKAYEA 120
           D+       +          K+++ Y  
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 7/76 (9%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDA------ARMLLESGAICS 93
            +         +++  G ++ +R +  +   +     G  D        ++ LE GA  +
Sbjct: 49  NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108

Query: 94  EHTFDGDRC-HYAALN 108
                          N
Sbjct: 109 ALYKPYKIVVFKNIFN 124

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGAICSEHTFD 98
            +  G    +R + E+G +++ RD    + AL+ A      +    L+E GA        
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 99  GDRC-HYAALN--LKVRKLLKAYEAR 121
           G      A        +     +  R
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRR 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A+R  D   L  +LE   +V+A D+    AL +    G     R+L E+GA +       
Sbjct: 52  AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H AA     +V + L
Sbjct: 111 GLTALHMAAGYVRPEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
             + G             +V +  +      + A       A   LLE   + +    D 
Sbjct: 22  EWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLEDRDVDAV---DE 75

Query: 100 DRC---HYAALN--LKVRKLL 115
           +      + A     K  +LL
Sbjct: 76  NGRTALLFVAGLGSDKCVRLL 96

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 20/90 (22%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 34  NGDVFEASRAGDVDRL---RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
               F A+  G    L     +L S   V      +  A   A   GHL     L E   
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 152

Query: 91  I--CSEHTFDGDRC-HYAALN--LKVRKLL 115
               +    +       AA N  L V   L
Sbjct: 153 TEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 8/89 (8%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQW--DSVALYYACLAGHLDAARMLLESGAICSEHTF 97
           A+  G +  L  + E             +  A   A   GHL     L E     +    
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 194

Query: 98  DGDRC---HYAALN---LKVRKLLKAYEA 120
             +      +AA+      V   L     
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCPV 223

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G       +L +GV+ +AR + D   L+ A   GH +   +LL+ GA  +      
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 100 DRC-HYAALN--LKVRKLL 115
               H+A  +   +V +LL
Sbjct: 101 MTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+  G  + +  +L+ G +VNA+D     AL++A    H +   +L++ GA     +   
Sbjct: 74  AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133

Query: 100 DRC-HYAALN--LKVRKLLK 116
                 +  N    + ++L+
Sbjct: 134 KTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.8 bits (110), Expect = 5e-06
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 39  EASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           EA+RAG  D +R ++ +G      D   +  L+ A   GH     +LL +G      T  
Sbjct: 8   EAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66

Query: 99  GDRC-HYAALN--LKVRKLL 115
                H AA      + ++L
Sbjct: 67  DRTPLHMAASEGHANIVEVL 86

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 40  ASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTF 97
           A++  DV  L  +L+  G  V+ R      AL+ A L  +L+AA +L+E+   +  E   
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 98  DGDRC-----HYAALN 108
                     H A +N
Sbjct: 70  SELYEGQTALHIAVIN 85

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-------------ALYYACLAGHLDAARMLL 86
           A    +V+ +R +L  G +V+AR                    L +A   G  +  R+L+
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 87  ESGAICSEHTFDGDRC-HYAALN 108
           E GA        G+   H   L 
Sbjct: 142 EHGADIRAQDSLGNTVLHILILQ 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R      L  ++ S  +VNA D     AL++A    ++DAA +LL++GA         
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 100 DRC-HYAALN--LKVRKLL 115
           +     AA     +  K+L
Sbjct: 191 ETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
           A+R    D  + +LE+  + N +D      L+ A  A      ++L+ + A 
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+   +VD    +L++G N + ++  +   L+ A   G  + A++LL+  A         
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223

Query: 100 DR-CHYAALN--LKVRKLL 115
                 A       + +LL
Sbjct: 224 RLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+R G  +  + +L+   N +  D  D +    A    H D  R+L     
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A  A      + ++ +   +++AR    +  L  A           L+ S A  +     
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H+AA    +    +L
Sbjct: 157 GKSALHWAAAVNNVDAAVVL 176

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+ AG  + ++ +L  G +VNA +Q     L+YA      + A MLLE GA         
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 100 DRC-HYAALN--LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGIS 156
               H AA    LK+  +L  Y+A       +Q    +T L    + + +EEA+ ++   
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKAST----NIQDTEGNTPLHLACDEERVEEAKFLVT-Q 194

Query: 157 GVTSNGASNSDSFP 170
           G +    +  +  P
Sbjct: 195 GASIYIENKEEKTP 208

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
          A      +    IL         DQ    AL++AC AGH +    LL+ G 
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A  AG  + + ++L+ GV VN +D      L+ A  AG  +  + LL  GA  +    +G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 100 DRC-HYAALN--LKVRKLLKAYEA 120
               HYAA     ++  +L    A
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGA 130

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
             +  D   + PL          A     V+  ++++  G ++   ++ +   L  A   
Sbjct: 164 STNIQDTEGNTPL--------HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--K 213

Query: 77  GHLDAARMLLESGA 90
           G L      L  G 
Sbjct: 214 GGLGLILKRLAEGE 227

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A++ G ++ + Y+++ G +V A D  D  A   A    H +   +      
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 50  RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN 108
           +  + +G +VNA D  ++  L  A LA        L+++GA  + +        H AA N
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 209

Query: 109 --LKVRKLL 115
               +   +
Sbjct: 210 RDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 40  ASRAGDVDRLRY-ILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A++  ++  ++Y + E G N + +D+     +  A   G ++    L++ GA        
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 99  GDR-CHYAALN--LKVRKLLKAYEA 120
                  A  N    +  +      
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 7/72 (9%), Positives = 16/72 (22%), Gaps = 7/72 (9%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
               G+     +   +       +    + L+    AG       +        +     
Sbjct: 68  GYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID---PR 123

Query: 100 DRC---HYAALN 108
                 H+ A N
Sbjct: 124 HNRTVLHWIASN 135

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE-HTFD 98
           A  A     + Y++++G +    ++ +  AL+ A           +L S  +  +    D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 99  GDRC---HYAALN-----LKVRKLL 115
            +        A N     +   KLL
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLL 257

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.0 bits (113), Expect = 5e-06
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A+R      L  ++ S  +VNA D     AL++A    ++DAA +LL++GA         
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 100 DRC-HYAALN--LKVRKLL 115
           +     AA     +  K+L
Sbjct: 159 ETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.6 bits (112), Expect = 6e-06
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+   +VD    +L++G N + ++  +   L+ A   G  + A++LL+  A
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
           A+R G  +  + +L+   N +  D  D +    A    H D  R+L E   +
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI-CSEHTFD 98
           A+R    D  + +LE+  + N +D      L+ A  A      ++L+ + A        D
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91

Query: 99  GDRC-HYAALN 108
           G      AA  
Sbjct: 92  GTTPLILAARL 102

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.2 bits (98), Expect = 4e-04
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 40  ASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98
           A  A      + ++ +   +++AR    +  L  A           L+ S A  +     
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124

Query: 99  GDRC-HYAALN--LKVRKLL 115
           G    H+AA    +    +L
Sbjct: 125 GKSALHWAAAVNNVDAAVVL 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.8 bits (110), Expect = 7e-06
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           A   G  + +  ++E+   +  +D   S AL +A     L  A  LL  G+ + ++   D
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK---D 98

Query: 99  GDRC---HYAALN--LKVRKLL 115
                   ++ +    ++   L
Sbjct: 99  FSGKTPLMWSIIFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.8 bits (110), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A +   +     +L  G NVN +D      L ++ + G+ + +  LLE GA  ++   +G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 100 DRC-HYAALN--LKVRKLL 115
           +     A+     ++ K L
Sbjct: 135 ETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.5 bits (104), Expect = 5e-05
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFD 98
           +   G  +   ++LE G NVN R+      L  A   G  +  + LLE GA I      D
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI---SARD 164

Query: 99  GDRC---HYAALN--LKVRKLL 115
                    A +    +V K+ 
Sbjct: 165 LTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 57  VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVRK 113
              N RD ++   L  AC+ G  +A   L+E+     +   +G     +A  N  L + +
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 114 LL 115
            L
Sbjct: 86  KL 87

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 16  IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACL 75
           +        S    K+    D     +   ++ L         +NA+D      L  A  
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 76  AGHLDAARMLLESGAICSEHTFDGDRC-HYAA 106
            G++     LL+ GA        G R   + A
Sbjct: 293 LGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 9   IDAELDEIDLDASDFSSSVPL--------KKVPNGDVFEASRAGDVDRLRYILESGVNVN 60
           ++       L+A+D   +  L            N  +      G +     +  +     
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215

Query: 61  ARDQWDSVALYYACLAGHLDAARMLLESGA 90
             +      L  A   G ++  R +L+   
Sbjct: 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 13/64 (20%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV-------------ALYYACLAGHLDAARMLL 86
           A     +  ++ ++E+G +V+ R                    L  A      D    LL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 87  ESGA 90
           E+  
Sbjct: 157 ENPH 160

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 11/61 (18%)

Query: 41  SRAGDVDRLRYILESG-----------VNVNARDQWDSVALYYACLAGHLDAARMLLESG 89
            + G    +  +L+                         AL+ A     L   ++L+E+G
Sbjct: 54  LQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113

Query: 90  A 90
           A
Sbjct: 114 A 114

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 531 DDLRE------KWLEAEAAELDKRDESALMFDKRLEMLMQVAKDEKSE 572
           D L +      KW E +   L + D ++       +   + AK +  E
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAAS---KVMEQEWREKAKKDLEE 122

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           A+ A  +    ++L++G NVN  D      L++A + GH   A + L+ GA
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 14/65 (21%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSV--------------ALYYACLAGHLDAARML 85
           A    ++  +  ++E+G +V A    D                 L  A     L   + L
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 86  LESGA 90
           L++  
Sbjct: 168 LQNSW 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	583
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.97
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.96
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.94
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.9
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.88
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.87
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.86
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.85
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.83
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.82
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.82
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.82
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.82
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.82
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.82
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.81
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.8
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.8
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.79
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.77
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.77
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.77
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.77
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.77
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.77
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.76
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.76
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.76
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.76
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.75
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.75
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.75
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.75
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.75
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.74
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.74
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.73
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.73
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.73
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.73
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.73
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.72
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.72
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.72
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.71
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.71
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.71
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.71
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.7
2rfa_A	232	Transient receptor potential cation channel subfa	99.7
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.7
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.69
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.69
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.69
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.69
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.69
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.69
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.68
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.68
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.68
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.68
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.68
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.67
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.67
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.67
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.67
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.67
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.67
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.66
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.66
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.66
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.66
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.66
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.66
2rfa_A	232	Transient receptor potential cation channel subfa	99.66
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.66
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.66
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.66
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.66
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.66
2etb_A	256	Transient receptor potential cation channel subfam	99.66
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.65
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.65
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.65
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.65
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.65
2etb_A	256	Transient receptor potential cation channel subfam	99.65
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.64
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.64
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.64
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.64
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.64
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.63
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.63
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.63
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.63
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.63
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.63
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.63
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.63
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.62
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.62
2pnn_A	273	Transient receptor potential cation channel subfa	99.61
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.61
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.61
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.61
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.61
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.61
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.61
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.6
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.6
2pnn_A	273	Transient receptor potential cation channel subfa	99.6
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.6
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.6
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.6
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.59
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.59
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.59
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.58
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.58
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.58
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.57
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.57
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.56
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.56
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.55
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.54
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.54
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.54
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.54
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.52
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.51
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.51
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.5
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.49
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.49
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.49
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.48
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.48
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.48
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.47
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.46
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.41
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.37
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.31
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.3
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.19
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	99.1
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	98.95
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.92
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	98.92
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	98.89
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.77
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.24
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.19
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.02
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	97.96
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	97.91
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	97.84
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	97.73
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.65
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.44
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.44
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.12
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.01
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	96.5
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	96.0
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	94.85
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	90.38
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	89.1
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	87.11
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	85.9
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	84.86
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	84.43
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	84.34
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	84.21
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	83.14

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.97  E-value=1.3e-31  Score=262.46  Aligned_cols=219  Identities=13%  Similarity=0.160  Sum_probs=175.4

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF  403 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~  403 (583)
                      ..-..+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|.++     ++....|.++++++++|
T Consensus        13 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~--~~~~~-----e~~~~~i~l~~v~~~~f   85 (256)
T 3hve_A           13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--NPPKD-----DGSTYKIELEGISVMVM   85 (256)
T ss_dssp             TTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------------CEEECSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCC--CCCcc-----cCCCCeEEeCCCCHHHH
Confidence            344567888899999999999999999999999999999999999999997  55522     12446899999999999


Q ss_pred             HHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 007949          404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVIAC  483 (583)
Q Consensus       404 ~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~  483 (583)
                      +.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+   +++||+.++.+|..|++..|.+.|.+||.+
T Consensus        86 ~~ll~~~Yt~~~-~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l---~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~  161 (256)
T 3hve_A           86 REILDYIFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI---AAENCIGIRDFALHYCLHHVHYLATEYLET  161 (256)
T ss_dssp             HHHHHHHHHSCC-CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC---CSSTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCC-cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC---CHhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            999999999999 7999999999999999999999999999999998   799999999999999999999999999999


Q ss_pred             hHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhHHhHHHHHHHHH
Q 007949          484 NFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESALMFDKRLEMLM  563 (583)
Q Consensus       484 nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~  563 (583)
                      ||..+..+++|.+|+.+    .+..+  +.++++.+.+|    .+++ +++++|+++++..   |..+...+++.+|+++
T Consensus       162 ~f~~v~~~~~f~~L~~~----~l~~l--L~~d~L~v~~E----~~v~-~av~~W~~~~~~~---R~~~~~~ll~~VRf~~  227 (256)
T 3hve_A          162 HFRDVSSTEEFLELSPQ----KLKEV--ISLEKLNVGNE----RYVF-EAVIRWIAHDTEI---RKVHMKDVMSALWVSG  227 (256)
T ss_dssp             HHHHHTTCHHHHSSCHH----HHHHH--HHCC-----------CTTH-HHHTTTCCC--CC---STTTHHHHHHHHHHHT
T ss_pred             HHHHHhCCcchhcCCHH----HHHHH--HccCCCCCCCH----HHHH-HHHHHHHHcCHHH---HHHHHHHHHHhCCCCC
Confidence            99999999999987665    21121  25566666677    5777 9999999998754   5667888999999987


Q ss_pred             HHhh
Q 007949          564 QVAK  567 (583)
Q Consensus       564 ~~~~  567 (583)
                      .+.+
T Consensus       228 l~~~  231 (256)
T 3hve_A          228 LDSS  231 (256)
T ss_dssp             TCC-
T ss_pred             CCHH
Confidence            7654

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.96  E-value=4.3e-31  Score=262.15  Aligned_cols=217  Identities=23%  Similarity=0.281  Sum_probs=182.3

Q ss_pred             hhhHHHHHHHhcccccCCCCCcEEEEEC---CEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC---
Q 007949          323 ICKLSSSVEAMHISDHVDDLADVCVRVD---KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH---  396 (583)
Q Consensus       323 ~~~l~~~l~~l~~l~~~~~~~Dv~~~~~---~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~---  396 (583)
                      ...-..++..++.++.++.+|||++.++   |+.|+|||.+|+++|+||++||.+  +|.|+.       ...|.++   
T Consensus        13 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~--~~~e~~-------~~~i~l~~~~   83 (279)
T 3i3n_A           13 SSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG--QFSESR-------SGRVEMRKWS   83 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------------EEECCCCS
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcC--CCcccc-------CCeEEecccc
Confidence            3455667788888999999999999998   999999999999999999999998  777764       3578888   


Q ss_pred             ---CCCHHHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHH
Q 007949          397 ---DLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKV  473 (583)
Q Consensus       397 ---~v~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L  473 (583)
                         ++++++|+.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+   +++||+.++.+|..|++..|
T Consensus        84 ~~~~v~~~~f~~ll~~~Ytg~~-~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l---~~~n~~~i~~~A~~~~~~~L  159 (279)
T 3i3n_A           84 SEPGPEPDTVEAVIEYMYTGRI-RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL---HLSNCVAIHSLAHMYTLSQL  159 (279)
T ss_dssp             STTCSCHHHHHHHHHHHHHSEE-EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CTTTHHHHHHHHHHTTCHHH
T ss_pred             ccCCCCHHHHHHHHHhhCcCCc-ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC---CcchHHHHHHHHHHcCcHHH
Confidence               8999999999999999999 7899999999999999999999999999999998   89999999999999999999


Q ss_pred             HHHHHHHHHhhHHHhhCchhHHHHHhcCCCCCCCcccc-ccCCCCCCccccCCCccchHHHHHHHHHHHhhhhhcchhhH
Q 007949          474 REYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFR-TTVPSAPGAIINVDQGNLLDDLREKWLEAEAAELDKRDESA  552 (583)
Q Consensus       474 ~~~c~~~i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~-~~~~~~~~~~ee~d~~e~~~~~~~~Wl~~~~~~~~~~~~~~  552 (583)
                      .+.|.+||.+||..+..+++|.+|+.+       .+.. +.++++.+.+|    .+++ +++++|+++++..   |..+.
T Consensus       160 ~~~~~~~i~~~f~~v~~~~~f~~L~~~-------~l~~lL~~d~L~v~sE----~~vf-~av~~W~~~~~~~---r~~~~  224 (279)
T 3i3n_A          160 ALKAADMIRRNFHKVIQDEEFYTLPFH-------LIRDWLSDLEITVDSE----EVLF-ETVLKWVQRNAEE---RERYF  224 (279)
T ss_dssp             HHHHHHHHHHTHHHHTTSSGGGGSCHH-------HHHHHHTCSSCCCSCH----HHHH-HHHHHHHHTTHHH---HTTTH
T ss_pred             HHHHHHHHHHHHHHHhcCcChhcCCHH-------HHHHHhcCcCCCCCCH----HHHH-HHHHHHHHcCHHH---HHHHH
Confidence            999999999999999999999987665       2222 25566667778    5777 9999999998764   45566


Q ss_pred             HhHHHHHHHHHHHhh
Q 007949          553 LMFDKRLEMLMQVAK  567 (583)
Q Consensus       553 ~~~~~~~~~~~~~~~  567 (583)
                      ..+++.+|+++.+.+
T Consensus       225 ~~ll~~VRf~l~~~~  239 (279)
T 3i3n_A          225 EELFKLLRLSQMKPT  239 (279)
T ss_dssp             HHHHTTSCGGGSCHH
T ss_pred             HHHHHhcCCCCCCHH
Confidence            777777777665544

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.94  E-value=2.5e-26  Score=210.97  Aligned_cols=159  Identities=24%  Similarity=0.366  Sum_probs=136.6

Q ss_pred             cccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCC
Q 007949          319 IDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDL  398 (583)
Q Consensus       319 ~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v  398 (583)
                      ...|+..+.+   .++.+++++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|.|+.       ...|.++++
T Consensus        14 ~~~p~~~l~~---~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~--~~~e~~-------~~~i~l~~~   81 (172)
T 3htm_A           14 VKVPECRLAD---ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESK-------KNRVEINDV   81 (172)
T ss_dssp             SCCCCCCHHH---HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHS--CCCGGG-------TTEEEECSS
T ss_pred             CCCCHHHHHH---HHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHcc--CccccC-------CCeEEecCC
Confidence            3444444443   3444677799999999999999999999999999999999998  777764       368999999


Q ss_pred             CHHHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHH
Q 007949          399 SKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCL  478 (583)
Q Consensus       399 ~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~  478 (583)
                      ++++|+.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+   +++||+.++.+|..|++..|++.|.
T Consensus        82 ~~~~f~~~l~~~Yt~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~A~~~~~~~L~~~~~  157 (172)
T 3htm_A           82 EPEVFKEMMCFIYTGKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILADLHSADQLKTQAV  157 (172)
T ss_dssp             CHHHHHHHHHHHHHSCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999 7899999999999999999999999999999998   8999999999999999999999999


Q ss_pred             HHHHhhHHHhhCchh
Q 007949          479 EVIACNFETFADSRE  493 (583)
Q Consensus       479 ~~i~~nf~~v~~~~~  493 (583)
                      +||.+||..++.+++
T Consensus       158 ~~i~~~~~~v~~s~~  172 (172)
T 3htm_A          158 DFINYHATDVLETSG  172 (172)
T ss_dssp             HHHHHTC--------
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999988763

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.90  E-value=7e-24  Score=213.82  Aligned_cols=159  Identities=24%  Similarity=0.366  Sum_probs=132.8

Q ss_pred             cccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCC
Q 007949          319 IDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDL  398 (583)
Q Consensus       319 ~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v  398 (583)
                      +..|+..+.+.   +..++.++.+|||++.++|+.|+|||.+|++||+||++||.+  +|.|+.       ...|.++++
T Consensus       154 ~~~p~~~l~~~---l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~--~~~e~~-------~~~i~l~~~  221 (312)
T 3hqi_A          154 VKVPECRLADE---LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESK-------KNRVEINDV  221 (312)
T ss_dssp             CCCCCCCHHHH---HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-------C-------CSEEEECSS
T ss_pred             cCCCCchHHHH---HHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhcc--CccccC-------CceEEecCC
Confidence            34455444433   444667799999999999999999999999999999999998  676653       468999999


Q ss_pred             CHHHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHHHHH
Q 007949          399 SKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCL  478 (583)
Q Consensus       399 ~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~~c~  478 (583)
                      ++++|+.+|+|+||+.+ .++.+++.+|+.+|++|+++.|+..|+++|.+.+   +.+||+.++.+|..|++..|++.|.
T Consensus       222 ~~~~f~~~L~~iYt~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~n~~~~l~~A~~~~~~~L~~~~~  297 (312)
T 3hqi_A          222 EPEVFKEMMCFIYTGKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILADLHSADQLKTQAV  297 (312)
T ss_dssp             CHHHHHHHHHHHHHSCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHhhcCCCC-CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999 6888999999999999999999999999999988   8999999999999999999999999


Q ss_pred             HHHHhhHHHhhCchh
Q 007949          479 EVIACNFETFADSRE  493 (583)
Q Consensus       479 ~~i~~nf~~v~~~~~  493 (583)
                      +||+.||..++.+++
T Consensus       298 ~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          298 DFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHTC--------
T ss_pred             HHHHHHHHHHhhCCC
Confidence            999999999988763

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.88  E-value=1.9e-23  Score=185.95  Aligned_cols=131  Identities=27%  Similarity=0.390  Sum_probs=95.6

Q ss_pred             HhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhc
Q 007949          332 AMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY  411 (583)
Q Consensus       332 ~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY  411 (583)
                      .++.+++++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|.|+..       ..|.++++++++|+.+++|+|
T Consensus        15 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~--~~~e~~~-------~~i~l~~~~~~~~~~~l~~~Y   85 (145)
T 4eoz_A           15 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESKK-------NRVEINDVEPEVFKEMMCFIY   85 (145)
T ss_dssp             HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHS--SSHHHHH-------TEEEECSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcC--CCcCCCC-------ceEEecCCCHHHHHHHHHhhc
Confidence            3444667799999999999999999999999999999999998  7777643       589999999999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcCcHHHHH
Q 007949          412 TDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKVRE  475 (583)
Q Consensus       412 t~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~~~~L~~  475 (583)
                      ||.+ .++.+++.+++.+|++|+++.|+..|+++|.+.+   +.+||+.++.+|..|++..|++
T Consensus        86 ~~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l---~~~n~~~~l~~A~~~~~~~Lk~  145 (145)
T 4eoz_A           86 TGKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILADLHSADQLKT  145 (145)
T ss_dssp             HSCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHCC------------------------------
T ss_pred             cCcc-CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCHHHhcC
Confidence            9999 7899999999999999999999999999999998   8999999999999999999874

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.87  E-value=8.3e-23  Score=199.85  Aligned_cols=185  Identities=16%  Similarity=0.230  Sum_probs=139.3

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCC--CCcccEEEcCCCCHHHHHHHhhhhcC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWR--YRNEIRFSREKLSYPALYGLIHFFYS  231 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~--e~~~~~i~l~~v~~~~~~~lL~ylYt  231 (583)
                      .+..+..++.+      |||+|.|+|+.|+|||.||+++|+||++||.+++.  ++....|.++++++++|+.+++|+||
T Consensus        21 ~l~~l~~~~~~------~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt   94 (256)
T 3hve_A           21 ALSSFREESRF------CDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFS   94 (256)
T ss_dssp             HHHTCCC--CC------CCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC------cceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccC
Confidence            44455555554      59999999999999999999999999999999887  66778999999999999999999999


Q ss_pred             CcccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHH
Q 007949          232 DRLEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAA  301 (583)
Q Consensus       232 g~~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~  301 (583)
                      |.+.++.+++.+++.+|..++++.|.+.+.          ||+.++.+|..+++..|.+.|.+|+.++|.          
T Consensus        95 ~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~----------  164 (256)
T 3hve_A           95 GQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFR----------  164 (256)
T ss_dssp             SCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred             CCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------
Confidence            999999999999999999999998888765          689999999999999999999999998864          


Q ss_pred             HHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeee----ccCHHHHHHHc
Q 007949          302 LSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLA----SRSEYFKARLS  373 (583)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~----~~S~~F~~~~~  373 (583)
                           ++    ...++|..++.+.+..++++       +   ++.+..|...|.|...|+.    .|..++..++.
T Consensus       165 -----~v----~~~~~f~~L~~~~l~~lL~~-------d---~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~  221 (256)
T 3hve_A          165 -----DV----SSTEEFLELSPQKLKEVISL-------E---KLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMS  221 (256)
T ss_dssp             -----HH----TTCHHHHSSCHHHHHHHHHC-------C----------CTTHHHHTTTCCC--CCSTTTHHHHHH
T ss_pred             -----HH----hCCcchhcCCHHHHHHHHcc-------C---CCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence                 11    13567899999999999987       5   5666556666666555543    23344444444

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.86  E-value=5.5e-23  Score=203.74  Aligned_cols=224  Identities=11%  Similarity=0.185  Sum_probs=167.6

Q ss_pred             ccccccCCCCCCCCCCCcEEEEEC---CEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcC------CCCHHHHHHH
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQ---GRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE------KLSYPALYGL  225 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~---~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~------~v~~~~~~~l  225 (583)
                      +..+..++.++      ||+|.|+   |+.|+|||.||+++|+||++||.++|.|+....|.++      ++++++|+.+
T Consensus        23 l~~l~~~~~~~------Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~l   96 (279)
T 3i3n_A           23 QNEQRRQGLFC------DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAV   96 (279)
T ss_dssp             HHHHHHHTTTC------CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHH
T ss_pred             HHHHHhcCCCC------CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHH
Confidence            33455555555      9999998   9999999999999999999999999999988899998      8999999999


Q ss_pred             hhhhcCCcccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 007949          226 IHFFYSDRLEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSALPEE  295 (583)
Q Consensus       226 L~ylYtg~~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~  295 (583)
                      |+|+|||.+.++.+++.+++.+|..++++.|.+.+.          ||+.++.+|..+++..|...|.+|+.++|.    
T Consensus        97 l~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~----  172 (279)
T 3i3n_A           97 IEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFH----  172 (279)
T ss_dssp             HHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH----
T ss_pred             HHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----
Confidence            999999999999999999999999999888888765          689999999999999999999999999864    


Q ss_pred             CchhHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeee----ccCHHHHHH
Q 007949          296 DRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLA----SRSEYFKAR  371 (583)
Q Consensus       296 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~----~~S~~F~~~  371 (583)
                                 ++    ...++|..++.+.+..++++       +   ++.+..|...|.|...|+.    .|..++..+
T Consensus       173 -----------~v----~~~~~f~~L~~~~l~~lL~~-------d---~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~l  227 (279)
T 3i3n_A          173 -----------KV----IQDEEFYTLPFHLIRDWLSD-------L---EITVDSEEVLFETVLKWVQRNAEERERYFEEL  227 (279)
T ss_dssp             -----------HH----TTSSGGGGSCHHHHHHHHTC-------S---SCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHH
T ss_pred             -----------HH----hcCcChhcCCHHHHHHHhcC-------c---CCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence                       11    14678999999999999876       4   4544445566777666653    355667777


Q ss_pred             HcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCc
Q 007949          372 LSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLL  435 (583)
Q Consensus       372 ~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~  435 (583)
                      +..                  |+++.+++..+..++   -+..+ -.....+.+++..|..|++
T Consensus       228 l~~------------------VRf~l~~~~~L~~~v---~~~~l-~~~~~~c~~~l~ea~~~~~  269 (279)
T 3i3n_A          228 FKL------------------LRLSQMKPTYLTRHV---KPERL-VANNEVCVKLVADAVERHA  269 (279)
T ss_dssp             HTT------------------SCGGGSCHHHHHHTT---TTSHH-HHTCHHHHHHHHHHHHHHH
T ss_pred             HHh------------------cCCCCCCHHHHHHHh---hccch-hcCCHHHHHHHHHHHHhcc
Confidence            764                  677778877765433   22222 1122356666666665544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.85  E-value=4.8e-21  Score=174.80  Aligned_cols=127  Identities=24%  Similarity=0.300  Sum_probs=118.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      -++...++ |+|+|.+|..|+||        ||+|+..|+.++++.|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        18 ~~v~~Ll~~Gadvn~~d~~g~t~--------l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~L   89 (169)
T 4gpm_A           18 DRVKDLIENGADVNASDSDGRTP--------LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL   89 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHH
Confidence            45566666 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++.+|..|+| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus        90 l~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT--SDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCC
Confidence            9999999999999999 577777  89999999999999888  78999999999998776

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.83  E-value=1.1e-20  Score=162.05  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=98.4

Q ss_pred             HHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHH
Q 007949          326 LSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEK  405 (583)
Q Consensus       326 l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~  405 (583)
                      ...+++.++.+++++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|.|+.       ...|.++++++++|+.
T Consensus         9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~--~~~e~~-------~~~i~l~~~~~~~f~~   79 (120)
T 2if5_A            9 SSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTS--GAVVDQ-------QNVYEIDFVSAEALTA   79 (120)
T ss_dssp             HHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-------C-------CSEEECCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcC--CccccC-------CceEEeCCCCHHHHHH
Confidence            4456677777888999999999999999999999999999999999998  777663       4689999999999999


Q ss_pred             HhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHH
Q 007949          406 MIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL  446 (583)
Q Consensus       406 ~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l  446 (583)
                      +++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus        80 ll~~~Yt~~~-~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           80 LMDFAYTATL-TVSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHSCC-CCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            9999999999 799999999999999999999999999987

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.82  E-value=3.8e-20  Score=169.55  Aligned_cols=132  Identities=20%  Similarity=0.277  Sum_probs=121.1

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.++....|.++++++++|+.+|+|+|||.
T Consensus        24 ~l~~l~~~~~~~------Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~   97 (172)
T 3htm_A           24 ELGGLWENSRFT------DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK   97 (172)
T ss_dssp             HHHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCCc------ceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence            444566666655      99999999999999999999999999999999999988999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      +.++.+++.+++.+|+.++++.|.+.+.          |++.++.+|..++++.|...|.+|+.+||.
T Consensus        98 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~  165 (172)
T 3htm_A           98 APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT  165 (172)
T ss_dssp             CTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888765          689999999999999999999999999986

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=157.56  Aligned_cols=104  Identities=28%  Similarity=0.365  Sum_probs=92.3

Q ss_pred             cccCCCCCcEEEEECC----EEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhc
Q 007949          336 SDHVDDLADVCVRVDK----KIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY  411 (583)
Q Consensus       336 l~~~~~~~Dv~~~~~~----~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY  411 (583)
                      +++++.+|||++.+++    +.|+|||.+|+++|+||++||.+  +|.|+       . ..|.++++++++|+.+++|+|
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~--~~~e~-------~-~~i~l~~~~~~~f~~~l~~iY   71 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYG--DLAEV-------K-SEIHIPDVEPAAFLILLKYMY   71 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------------C-CEEEETTSCHHHHHHHHHHHH
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcC--CcccC-------C-CeEEeCCCCHHHHHHHHHHHc
Confidence            5677999999999998    89999999999999999999998  77765       3 589999999999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007949          412 TDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL  450 (583)
Q Consensus       412 t~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l  450 (583)
                      ||.+ .++.+++.+++.+|++|+++.|++.|+++|.+++
T Consensus        72 t~~~-~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           72 SDEI-DLEADTVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             HCCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCc-cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            9999 7999999999999999999999999999998764

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.82  E-value=2.6e-20  Score=161.44  Aligned_cols=115  Identities=19%  Similarity=0.288  Sum_probs=103.8

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeec-CCCCHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE-HDLSKET  402 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l-~~v~~~~  402 (583)
                      .....+++.++.++.++.+|||++.++|+.|+|||.||+++|+||++||.+  +|.|        ....|.+ +++++++
T Consensus        11 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~--~~~e--------~~~~i~l~~~~~~~~   80 (127)
T 1r29_A           11 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD--QLKR--------NLSVINLDPEINPEG   80 (127)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTS--TTTT--------TCSEEECCTTSCHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcC--CccC--------CCCEEEeCCCCCHHH
Confidence            334566777788889999999999999999999999999999999999998  6666        2357999 9999999


Q ss_pred             HHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007949          403 FEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLH  449 (583)
Q Consensus       403 ~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~  449 (583)
                      |+.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.++
T Consensus        81 f~~ll~~~Ytg~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~  126 (127)
T 1r29_A           81 FNILLDFMYTSRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS  126 (127)
T ss_dssp             HHHHHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCc-CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            9999999999999 799999999999999999999999999999753

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.82  E-value=1.8e-20  Score=165.80  Aligned_cols=117  Identities=17%  Similarity=0.273  Sum_probs=101.3

Q ss_pred             chhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHH
Q 007949          322 GICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE  401 (583)
Q Consensus       322 ~~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~  401 (583)
                      .+.....+++.++.++.++.+|||++.++|+.|+|||.||+++|+||++||.+  +|.|..     +....|.+++++++
T Consensus        27 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~--~~~e~e-----~~~~~I~l~~v~~~   99 (144)
T 2ppi_A           27 DPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--NPPKDD-----GSTYKIELEGISVM   99 (144)
T ss_dssp             CTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH--CC----------CCCEEECCSSCHH
T ss_pred             CcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcC--CCcccc-----CCCcEEEeCCCCHH
Confidence            34556678888888999999999999999999999999999999999999997  665531     13468999999999


Q ss_pred             HHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHH
Q 007949          402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL  446 (583)
Q Consensus       402 ~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l  446 (583)
                      +|+.+|+|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus       100 ~f~~lL~fiYtg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A          100 VMREILDYIFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             HHHHHHHHHTTSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            99999999999999 799999999999999999999999999876

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.82  E-value=2.2e-20  Score=160.26  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=100.5

Q ss_pred             hHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHH
Q 007949          325 KLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFE  404 (583)
Q Consensus       325 ~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~  404 (583)
                      .-..+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+              ....|.++++++++|+
T Consensus        11 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--------------~~~~i~l~~~~~~~f~   76 (121)
T 1buo_A           11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR--------------NSQHYTLDFLSPKTFQ   76 (121)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS--------------CCSEEEECSSCHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC--------------CCcEEEeCCCCHHHHH
Confidence            34456667777888899999999999999999999999999999999986              2357999999999999


Q ss_pred             HHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007949          405 KMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL  450 (583)
Q Consensus       405 ~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l  450 (583)
                      .+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus        77 ~ll~~~Ytg~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           77 QILEYAYTATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHHSCC-CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhcCCCc-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            99999999999 7999999999999999999999999999997653

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.82  E-value=1e-20  Score=166.43  Aligned_cols=119  Identities=21%  Similarity=0.332  Sum_probs=106.0

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC-CCCHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH-DLSKET  402 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~-~v~~~~  402 (583)
                      ..-..+++.++.++.++.+|||++.++|+.|+|||.||+++|+||++||.+  +|.|+         ..|.++ ++++++
T Consensus        18 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~~e~---------~~i~l~~~v~~~~   86 (138)
T 2z8h_A           18 VHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG--QTDAE---------LTVTLPEEVTVKG   86 (138)
T ss_dssp             SHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--CCCTT---------EEEECCTTSCHHH
T ss_pred             chHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhc--CCCCC---------ceEEeCCCCCHHH
Confidence            344566777778888899999999999999999999999999999999997  66553         368885 899999


Q ss_pred             HHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhh
Q 007949          403 FEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAE  457 (583)
Q Consensus       403 ~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n  457 (583)
                      |+.+|+|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+   +.+|
T Consensus        87 ~~~lL~~~Ytg~~-~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l---~~sn  137 (138)
T 2z8h_A           87 FEPLIQFAYTAKL-ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF---LDST  137 (138)
T ss_dssp             HHHHHHHHHHSCC-CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC---SCCC
T ss_pred             HHHHHHHhcCCCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---cccc
Confidence            9999999999999 7999999999999999999999999999999988   4544

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.81  E-value=2.2e-20  Score=159.80  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             HHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHH
Q 007949          326 LSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEK  405 (583)
Q Consensus       326 l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~  405 (583)
                      ...+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|           ...|.++++++++|+.
T Consensus         8 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~-----------~~~i~l~~~~~~~f~~   74 (119)
T 3b84_A            8 SVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD--GS-----------GGSVVLPAGFAEIFGL   74 (119)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--TT-----------CCCEEECGGGHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCC--CC-----------CCeEEeCCCCHHHHHH
Confidence            4456677777888899999999999999999999999999999999997  33           2468999999999999


Q ss_pred             HhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007949          406 MIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLH  449 (583)
Q Consensus       406 ~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~  449 (583)
                      +++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus        75 ll~~iYtg~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~  117 (119)
T 3b84_A           75 LLDFFYTGHL-ALTSGNRDQVLLAARELRVPEAVELCQSFKPKT  117 (119)
T ss_dssp             HHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred             HHHHHcCCCC-ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence            9999999999 799999999999999999999999999998653

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.80  E-value=6.9e-20  Score=156.02  Aligned_cols=108  Identities=22%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             HHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC--CCCHHHH
Q 007949          326 LSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH--DLSKETF  403 (583)
Q Consensus       326 l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~--~v~~~~~  403 (583)
                      -..+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+  +           ....|.++  ++++++|
T Consensus         6 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~--~-----------~~~~i~l~~~~~~~~~f   72 (116)
T 2vpk_A            6 CEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS--T-----------SENNVFLDQSQVKADGF   72 (116)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--C-----------CCSCEECCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcC--C-----------CCCeEEeecCCCCHHHH
Confidence            3456677777888899999999999999999999999999999999997  2           12356666  9999999


Q ss_pred             HHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHH
Q 007949          404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLL  447 (583)
Q Consensus       404 ~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~  447 (583)
                      +.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus        73 ~~ll~~~Yt~~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           73 QKLLEFIYTGTL-NLDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             HHHHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999 7999999999999999999999999999984

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.80  E-value=3.8e-20  Score=158.26  Aligned_cols=109  Identities=21%  Similarity=0.319  Sum_probs=99.0

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF  403 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~  403 (583)
                      .....+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+              ....|.++++++++|
T Consensus         9 ~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~--------------~~~~i~l~~~~~~~f   74 (119)
T 2q81_A            9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD--------------QKDVVHLDISNAAGL   74 (119)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH--------------CCSGGGGGGCCHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC--------------CCCEEEeCCCCHHHH
Confidence            344567777888888999999999999999999999999999999999986              234688899999999


Q ss_pred             HHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHH
Q 007949          404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLL  447 (583)
Q Consensus       404 ~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~  447 (583)
                      +.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus        75 ~~ll~~~Ytg~~-~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           75 GQVLEFMYTAKL-SLSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999 7999999999999999999999999999884

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.79  E-value=3.5e-20  Score=162.11  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=98.6

Q ss_pred             hHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHH
Q 007949          325 KLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFE  404 (583)
Q Consensus       325 ~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~  404 (583)
                      ....+++.|+.++.++.+|||++.++|+.|+|||.||+++|+||++||.+  +|           ...|.++++++++|+
T Consensus         8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~--~~-----------~~~i~l~~~~~~~f~   74 (135)
T 2yy9_A            8 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD--GT-----------GGSVVLPAGFAEIFG   74 (135)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-----------------CCEEECGGGHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcC--CC-----------CCeEEeCCCCHHHHH
Confidence            34566777888899999999999999999999999999999999999997  43           246899999999999


Q ss_pred             HHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007949          405 KMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHL  450 (583)
Q Consensus       405 ~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l  450 (583)
                      .+|+|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus        75 ~lL~fiYtg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l  119 (135)
T 2yy9_A           75 LLLDFFYTGHL-ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTS  119 (135)
T ss_dssp             HHHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred             HHHHHHhCCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            99999999999 7999999999999999999999999999998887

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.77  E-value=1.1e-18  Score=149.57  Aligned_cols=104  Identities=22%  Similarity=0.415  Sum_probs=89.2

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.++|.++....|.++++++++|+.+|+|+|||.
T Consensus        15 ~l~~l~~~~~~~------Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~   88 (120)
T 2if5_A           15 GLNEQRTQGLLC------DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT   88 (120)
T ss_dssp             HHHHHHHTTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCC------CeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence            344455555555      99999999999999999999999999999999999988999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHHHH
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      +.++.+++.+++.+|+.++++.|.+.+...
T Consensus        89 ~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~  118 (120)
T 2if5_A           89 LTVSTANVGDILSAARLLEIPAVSHVCADL  118 (120)
T ss_dssp             CCCCGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999999999999988887643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=1.2e-18  Score=152.84  Aligned_cols=118  Identities=26%  Similarity=0.344  Sum_probs=107.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |+|+ .+|..|+||        ||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus         1 G~d~-~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~   71 (137)
T 3c5r_A            1 GIDP-FTNHRGETL--------LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT   71 (137)
T ss_dssp             ---C-CCCTTCCCH--------HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCC-CcCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC
Confidence            5677 689999999        8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..+.
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~A~~~~~  121 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA--VNIFGLRPVDYTDDESM  121 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCGGGGCCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHhhccH
Confidence            9999998 577777  89999999999999887  78999999999997555

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.77  E-value=4.7e-19  Score=155.47  Aligned_cols=118  Identities=22%  Similarity=0.140  Sum_probs=111.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.
T Consensus         2 ~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~   72 (136)
T 1d9s_A            2 SPGIHMLGGSSDAG--------LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC   72 (136)
T ss_dssp             CCCCSCCCCCCSCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC
T ss_pred             CCCccCCCCCCccH--------HHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC
Confidence            57899999999999        899999999999999999999999999999999999999 999999999999999999


Q ss_pred             cCCC-Cch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFD-GDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~-g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+.. |.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~~~~~  123 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV--CDAWGRLPVDLAEEQGH  123 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC--CSSSSSCHHHHHHHHTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCC
Confidence            9999 898 577777  89999999999999887  78899999999998776

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.77  E-value=2.9e-20  Score=160.61  Aligned_cols=112  Identities=22%  Similarity=0.320  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCC-CCHH
Q 007949          323 ICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHD-LSKE  401 (583)
Q Consensus       323 ~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~-v~~~  401 (583)
                      ...-..+++.++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+  +|.|         ...|.+++ ++++
T Consensus        13 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~~e---------~~~i~l~~~~~~~   81 (125)
T 3ohu_A           13 TVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKN---------DLVVSLPEEVTAR   81 (125)
T ss_dssp             SSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTT--CCCS---------SCEEECCTTCCHH
T ss_pred             HHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcC--CCCC---------CcEEEeCCCCCHH
Confidence            3445567777888888999999999999999999999999999999999997  5554         24789998 9999


Q ss_pred             HHHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHH
Q 007949          402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL  446 (583)
Q Consensus       402 ~~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l  446 (583)
                      +|+.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus        82 ~f~~~l~~iYtg~~-~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A           82 GFGPLLQFAYTAKL-LLSRENIREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             HHHHHHHHHTTSEE-EECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHHHHhHcCCce-EECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            99999999999999 789999999999999999999999997653

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.77  E-value=2.1e-18  Score=173.62  Aligned_cols=131  Identities=20%  Similarity=0.280  Sum_probs=114.8

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      +..++.++.+      +||+|.|+|+.|+|||.||++|||||++||.+++.++....|.++++++++|+.+|+|+|||.+
T Consensus       165 l~~l~~~~~~------~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~  238 (312)
T 3hqi_A          165 LGGLWENSRF------TDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA  238 (312)
T ss_dssp             HHHHHHTTCS------CCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhCCCC------CceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC
Confidence            3344445454      5999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007949          235 EIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA  291 (583)
Q Consensus       235 ~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~  291 (583)
                      +++.+++.+++.+|+.++++.|++.++          |++.++.+|..+++..|.+.|..|+..++.
T Consensus       239 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~  305 (312)
T 3hqi_A          239 PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT  305 (312)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988876          678899999999999999999999999975

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=145.14  Aligned_cols=96  Identities=21%  Similarity=0.283  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEECC----EeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHH
Q 007949          167 DSFPPDVVFYVQG----RPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDME  242 (583)
Q Consensus       167 ~~~~~Dv~~~v~~----~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~  242 (583)
                      ++.+|||+|.+++    +.|+|||.||+++|+||++||.++|.++. ..|.++++++++|+.+|+|+|||.+.++.+++.
T Consensus         5 ~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~   83 (109)
T 2vkp_A            5 NELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVL   83 (109)
T ss_dssp             CCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHH
T ss_pred             CCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHH
Confidence            3456699999988    89999999999999999999999999888 889999999999999999999999999999999


Q ss_pred             HHHHHHhHhchHHHHHHHHHH
Q 007949          243 DLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       243 ~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      +++.+|+.++++.|++.+...
T Consensus        84 ~ll~~A~~~~~~~L~~~c~~~  104 (109)
T 2vkp_A           84 ATLYAAKKYIVPALAKACVNF  104 (109)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHH
Confidence            999999999888888777643

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.77  E-value=3.2e-20  Score=159.94  Aligned_cols=110  Identities=22%  Similarity=0.342  Sum_probs=96.3

Q ss_pred             HHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeec-CCCCHHHHH
Q 007949          326 LSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE-HDLSKETFE  404 (583)
Q Consensus       326 l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l-~~v~~~~~~  404 (583)
                      -..+++.++.++.++.+|||++.++|+.|+|||.||+++|+||++||.+  +|.|+         ..|.+ .++++++|+
T Consensus        13 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~--~~~e~---------~~i~l~~~v~~~~f~   81 (124)
T 2ihc_A           13 STNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGE---------LNITLPEEVTVKGFE   81 (124)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTT--C---C---------EEEECCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcC--CCCCC---------ceEeecCCcCHHHHH
Confidence            3456667777888899999999999999999999999999999999997  66553         36888 489999999


Q ss_pred             HHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHH
Q 007949          405 KMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLL  447 (583)
Q Consensus       405 ~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~  447 (583)
                      .+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus        82 ~lL~~iYtg~~-~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           82 PLIQFAYTAKL-ILSKENVDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHHHHSEE-EEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHhcCCCc-ccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            99999999999 7889999999999999999999999998764

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.76  E-value=4.5e-19  Score=157.53  Aligned_cols=120  Identities=20%  Similarity=0.291  Sum_probs=93.2

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.++....|.++++++++|+.+|+|+|||.
T Consensus        15 ~l~~l~~~~~~~------Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~   88 (145)
T 4eoz_A           15 ELGGLWENSRFT------DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK   88 (145)
T ss_dssp             HHHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCCc------ceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCc
Confidence            344555666655      99999999999999999999999999999999988888899999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHH----------HHHHHHHHHHHcCChhHH
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIE----------KELIHQKYAEYKALRDVD  279 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~----------~~l~~~~~a~~~~~~~l~  279 (583)
                      +.++.+++.+++.+|+.++++.|.+.+.          ||+.++.+|..+++..|.
T Consensus        89 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk  144 (145)
T 4eoz_A           89 APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLK  144 (145)
T ss_dssp             CTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--------------------------
T ss_pred             cCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhc
Confidence            9999999999999999999999988876          678888888888877664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.76  E-value=3.5e-18  Score=155.80  Aligned_cols=126  Identities=24%  Similarity=0.326  Sum_probs=115.8

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+
T Consensus        29 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  100 (169)
T 2y1l_E           29 EVRILMANGADVNAEDASGWTP--------LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL  100 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444454 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus       101 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E          101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA--QDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHhCC
Confidence            999999999999998 577777  89999999999999877  78899999999998776

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.76  E-value=3.8e-18  Score=147.73  Aligned_cols=103  Identities=19%  Similarity=0.269  Sum_probs=91.7

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEc-CCCCHHHHHHHhhhhcCC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSR-EKLSYPALYGLIHFFYSD  232 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l-~~v~~~~~~~lL~ylYtg  232 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.+ ....|.+ +++++++|+.+|+|+|||
T Consensus        19 ~l~~l~~~~~~~------Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg   91 (127)
T 1r29_A           19 NLNRLRSRDILT------DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTS   91 (127)
T ss_dssp             HHHHHHHTTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCCC------CEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence            344555565555      99999999999999999999999999999999988 7788999 999999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHHHHHH
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      .+.++.+++.+++.+|+.++++.|.+.+.+.
T Consensus        92 ~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~  122 (127)
T 1r29_A           92 RLNLREGNIMAVMATAMYLQMEHVVDTCRKF  122 (127)
T ss_dssp             CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999888888777643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.76  E-value=3.2e-18  Score=168.52  Aligned_cols=134  Identities=19%  Similarity=0.244  Sum_probs=104.8

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCC-------------------------CCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLK-------------------------KVPNGDVFEASRAGDVDRLRYILESGVNVNA   61 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~-------------------------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~   61 (583)
                      ++...+. |+++|.+|..|+|||+                         ..+.+++|+|+..++.++++.|++.|+++|.
T Consensus        68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~  147 (269)
T 4b93_B           68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK  147 (269)
T ss_dssp             -------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC
Confidence            3444554 8888888888888853                         1344556677777777777777777788888


Q ss_pred             cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhc
Q 007949           62 RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLG  138 (583)
Q Consensus        62 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A  138 (583)
                      +|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~--~d~~G~TpL~~A  225 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV--LNKRQRTAVDCA  225 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCSGGGS
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHH
Confidence            8889999999999999999999999999999999999998 577777  88899999999998877  788899999999


Q ss_pred             ccccc
Q 007949          139 CGANR  143 (583)
Q Consensus       139 ~~~~~  143 (583)
                      +.+++
T Consensus       226 ~~~~~  230 (269)
T 4b93_B          226 EQNSK  230 (269)
T ss_dssp             CTTCH
T ss_pred             HhCCc
Confidence            87654

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.75  E-value=2.2e-19  Score=155.96  Aligned_cols=112  Identities=19%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecC-CCCHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH-DLSKET  402 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~-~v~~~~  402 (583)
                      ..-..++..++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+  +           ....|.++ ++++++
T Consensus        15 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~--~-----------~~~~i~l~~~~~~~~   81 (129)
T 3ga1_A           15 NFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN--S-----------RSAVVELPAAVQPQS   81 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHH--C-----------CCSEEECCTTCCHHH
T ss_pred             cHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcC--C-----------CCCEEEECCCCCHHH
Confidence            344556777888899999999999999999999999999999999999996  2           23579996 899999


Q ss_pred             HHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007949          403 FEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLH  449 (583)
Q Consensus       403 ~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~  449 (583)
                      |+.+++|+|||.+ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus        82 f~~ll~~iYtg~~-~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A           82 FQQILSFCYTGRL-SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             HHHHHHHHHHSEE-ECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHhCCcc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999999 799999999999999999999999999999764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.75  E-value=4.9e-18  Score=152.04  Aligned_cols=125  Identities=20%  Similarity=0.257  Sum_probs=112.7

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |.+++ .|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        17 ~v~~Ll~~g~~~~-~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   87 (153)
T 1awc_B           17 EVRILMANGAPFT-TDWLGTSP--------LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHHHHHTCCCC-CCTTCCCH--------HHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCC-cCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            3344444 66666 58889999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus        88 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT--QSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCC
Confidence            999999999999998 577777  89999999999999887  78899999999998776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.75  E-value=5.2e-18  Score=154.20  Aligned_cols=127  Identities=21%  Similarity=0.318  Sum_probs=116.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |.++|.+|..|+||        ||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|
T Consensus        17 ~~v~~ll~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   88 (167)
T 3v31_A           17 LYLATRIEQENVINHTDEEGFTP--------LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML   88 (167)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCH--------HHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            34444454 78899999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..++
T Consensus        89 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI--ETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTC
T ss_pred             HHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCc
Confidence            9999999999999998 577777  89999999999999887  78899999999998777

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.75  E-value=4.8e-18  Score=154.87  Aligned_cols=110  Identities=24%  Similarity=0.334  Sum_probs=96.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...+. |++++.+|..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        51 ~~~~~ll~~gad~~~~d~~g~Tp--------Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  122 (169)
T 4gpm_A           51 EVVKLLISKGADVNAKDSDGRTP--------LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL  122 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcccchhhhccCCCCH--------HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455555 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCC
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPP  124 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~  124 (583)
                      +++|++++.+|..|.|| |+|+.  +.+++++|+++|+++.-
T Consensus       123 l~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999995 66666  89999999999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.75  E-value=7.3e-18  Score=157.00  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=109.6

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...+. |++++.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        50 ~v~~Ll~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  121 (192)
T 2rfm_A           50 AIDKLVENFDKLEDKDIEGSTA--------LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL  121 (192)
T ss_dssp             GHHHHHHHHCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhccccccccccCccH--------HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3444444 77888888889999        79999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..++
T Consensus       122 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA--RDLTGLTAEASARIFGR  179 (192)
T ss_dssp             HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhCc
Confidence            999999999999998 577776  78899999999988877  68889999999998776

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=1.4e-17  Score=151.00  Aligned_cols=125  Identities=23%  Similarity=0.269  Sum_probs=112.7

Q ss_pred             hhhhcc--cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            9 IDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         9 ~~~~~~--~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +...+.  +.+++..+..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        24 v~~ll~~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   95 (165)
T 3twr_A           24 VKKLCTVQSVNCRDIEGRQSTP--------LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV   95 (165)
T ss_dssp             HHHHCCTTTTTCCCTTTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCccccccCCCCH--------HHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            344443  56788888899999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++..|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+.++.
T Consensus        96 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~a~~~~~  153 (165)
T 3twr_A           96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK--KNRDGNTPLDLVKDGDT  153 (165)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCTGGGSCTTCH
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCChhHhHhcCCh
Confidence            999999999999998 577777  89999999999999887  78999999999987433

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.74  E-value=3.9e-18  Score=144.84  Aligned_cols=103  Identities=19%  Similarity=0.307  Sum_probs=92.7

Q ss_pred             hhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHH
Q 007949          324 CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF  403 (583)
Q Consensus       324 ~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~  403 (583)
                      +.-..++..++.++.++.+|||++.++|+.|+|||.+|+++|+||++||.+              ....|.++++++++|
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~--------------~~~~i~l~~~~~~~f   78 (116)
T 3fkc_A           13 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV--------------AGQVVELSFIRAEIF   78 (116)
T ss_dssp             THHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTS--------------CCSEEEECSSCHHHH
T ss_pred             cHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcC--------------CCCEEEeCCCCHHHH
Confidence            344566777777888899999999999999999999999999999999987              135799999999999


Q ss_pred             HHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHH
Q 007949          404 EKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKR  440 (583)
Q Consensus       404 ~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~  440 (583)
                      +.+++|+|||.++.++.+++.+++.+|++|+++.|++
T Consensus        79 ~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           79 AEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence            9999999999995599999999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.74  E-value=1.2e-17  Score=153.74  Aligned_cols=119  Identities=24%  Similarity=0.187  Sum_probs=112.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        29 ~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  100 (179)
T 3f6q_A           29 ENDLNQGDDHGFSP--------LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA  100 (179)
T ss_dssp             TSCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccCCCCCCH--------HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            67899999999999        8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..++
T Consensus       101 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A          101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSI--CNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB--CCTTSCCGGGGSCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch--hccCCCCcHHHHHHHHH
Confidence            9999998 577776  89999999999999887  78999999999997666

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.73  E-value=9.8e-18  Score=153.13  Aligned_cols=126  Identities=21%  Similarity=0.234  Sum_probs=114.3

Q ss_pred             chhhhcc-cCC-CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EID-LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~d-in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .+...+. +.+ ++.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        17 ~v~~ll~~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   88 (172)
T 3v30_A           17 QLKEHLRKGDNLVNKPDERGFTP--------LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL   88 (172)
T ss_dssp             HHHHHHTTCSGGGGCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCcccccCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHH
Confidence            3444444 444 88899999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus        89 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT--EADSGYTPMDLAVALGY  147 (172)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTC
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHhCc
Confidence            9999999999999998 577777  89999999999999887  78899999999998777

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.73  E-value=8.1e-18  Score=148.65  Aligned_cols=102  Identities=17%  Similarity=0.298  Sum_probs=88.0

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCC--CcccEEEcCCCCHHHHHHHhhhhcC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRY--RNEIRFSREKLSYPALYGLIHFFYS  231 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e--~~~~~i~l~~v~~~~~~~lL~ylYt  231 (583)
                      .+..+..++.+      |||+|.++|+.|+|||.||+++|+||++||.+++.+  +....|.++++++++|+.+|+|+||
T Consensus        37 ~l~~l~~~~~~------~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYt  110 (144)
T 2ppi_A           37 ALSSFREESRF------CDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFS  110 (144)
T ss_dssp             HHHHTTC--CC------CCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCC------cceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhC
Confidence            44455555554      599999999999999999999999999999988765  5677899999999999999999999


Q ss_pred             CcccCChhhHHHHHHHHhHhchHHHHHHHH
Q 007949          232 DRLEIAVDDMEDLVKICKVCKCESLQRIIE  261 (583)
Q Consensus       232 g~~~i~~~~~~~ll~~a~~~~~~~l~~~l~  261 (583)
                      |.+.++.+++.+++.+|+.++++.|++.|.
T Consensus       111 g~~~i~~~~v~~ll~~A~~l~i~~L~~~C~  140 (144)
T 2ppi_A          111 GQIRLNEDTIQDVVQAADLLLLTDLKTLCC  140 (144)
T ss_dssp             SCCCCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            999999999999999999999998888775

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.73  E-value=5.6e-18  Score=144.74  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      +..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|||++
T Consensus        15 l~~l~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~   84 (119)
T 3b84_A           15 LNKQREKGQYC------DATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHL   84 (119)
T ss_dssp             HHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCCCc------ceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence            33455555555      999999999999999999999999999999876    45678889999999999999999999


Q ss_pred             cCChhhHHHHHHHHhHhchHHHHHHHHH
Q 007949          235 EIAVDDMEDLVKICKVCKCESLQRIIEK  262 (583)
Q Consensus       235 ~i~~~~~~~ll~~a~~~~~~~l~~~l~~  262 (583)
                      .++.+++.+++.+|+.++++.|.+.+.+
T Consensus        85 ~~~~~~v~~ll~~A~~~~i~~L~~~C~~  112 (119)
T 3b84_A           85 ALTSGNRDQVLLAARELRVPEAVELCQS  112 (119)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            9999999999999999988888887764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.73  E-value=8.6e-18  Score=151.77  Aligned_cols=126  Identities=21%  Similarity=0.181  Sum_probs=114.3

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...+. |+++|.+|..|+||        ||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        19 ~~v~~Ll~~~~~~~~~~~~g~t~--------L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   89 (162)
T 1ihb_A           19 EQLTSLLQNNVNVNAQNGFGRTA--------LQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL   89 (162)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCH--------HHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhCCCCccccCccCccH--------HHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455555 89999999999999        799999 999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCC-CCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARP-PPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~-~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..+..|.| +|+|+.  +.+++++|+++|++. +.  .+..|.||||+|+..++
T Consensus        90 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGR  149 (162)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC--cCCCCCcHHHHHHHcCC
Confidence            9999999999999998 577777  899999999999974 55  68899999999998776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.73  E-value=7.7e-18  Score=165.82  Aligned_cols=110  Identities=22%  Similarity=0.261  Sum_probs=97.4

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--h
Q 007949           32 VPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--N  108 (583)
Q Consensus        32 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~  108 (583)
                      .|.|+||+|+..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|++.|++++.+|..|.| +|+|+.  +
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999999999998 577776  7


Q ss_pred             HHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          109 LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       109 ~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+++++|+++|++++.  ++..|.||||+||..++
T Consensus       165 ~~~v~~Ll~~gadvn~--~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          165 HELVALLLQHGASINA--SNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             GGGHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCc--cccCCCcHHHHHHHcCC
Confidence            8899999999988877  68889999999998776

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.72  E-value=1.8e-17  Score=141.01  Aligned_cols=99  Identities=15%  Similarity=0.248  Sum_probs=84.9

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcC--CCCHHHHHHHhhhhcCC
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE--KLSYPALYGLIHFFYSD  232 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~--~v~~~~~~~lL~ylYtg  232 (583)
                      +..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.++  .  ...|.++  ++++++|+.+|+|+|||
T Consensus        13 l~~l~~~~~~~------Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~--~~~i~l~~~~~~~~~f~~ll~~~Yt~   82 (116)
T 2vpk_A           13 LNKQREAGFLC------DCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--S--ENNVFLDQSQVKADGFQKLLEFIYTG   82 (116)
T ss_dssp             HHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--C--CSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCCC------cEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--C--CCeEEeecCCCCHHHHHHHHHHHcCC
Confidence            33455555555      99999999999999999999999999999876  2  3345555  99999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHHHHHH
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      .+.++.+++.+++.+|+.++++.|.+.+.+.
T Consensus        83 ~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~  113 (116)
T 2vpk_A           83 TLNLDSWNVKEIHQAADYLKVEEVVTKCKIK  113 (116)
T ss_dssp             CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999888888877643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.72  E-value=2.1e-17  Score=148.19  Aligned_cols=117  Identities=20%  Similarity=0.125  Sum_probs=108.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.++|..|..|+||        ||+ +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        26 ~~~~~~~~~~g~t~--------L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   96 (156)
T 1bd8_A           26 LVHPDALNRFGKTA--------LQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV   96 (156)
T ss_dssp             CCCTTCCCTTSCCH--------HHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CcCccccCCCCCcH--------HHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            56899999999999        799 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .|..|.| +|+|+.  +.+++++|++. ++++.  ++..|.||||+|+..++
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~--~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           97 PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR--RDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC--CCTTSCCHHHHHHHSCC
T ss_pred             cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC--cCCCCCCHHHHHHHcCc
Confidence            9999998 577777  89999999998 77666  78899999999998776

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.72  E-value=2.8e-17  Score=140.88  Aligned_cols=100  Identities=23%  Similarity=0.382  Sum_probs=87.3

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      .+..+..++.++      ||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+|+|+|||+
T Consensus        18 ~l~~l~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~   86 (121)
T 1buo_A           18 KANQMRLAGTLC------DVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTAT   86 (121)
T ss_dssp             HHHHHHHHTTTC------CEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCC------CEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCC
Confidence            344555555555      99999999999999999999999999999864     3468889999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHHHHH
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIEKEL  264 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~~~l  264 (583)
                      +.++.+++.+++.+|+.++++.|++.+.+.+
T Consensus        87 ~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l  117 (121)
T 1buo_A           87 LQAKAEDLDDLLYAAEILEIEYLEEQCLKML  117 (121)
T ss_dssp             CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            9999999999999999999988888876543

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.71  E-value=3.2e-18  Score=145.74  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=84.3

Q ss_pred             ccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCC
Q 007949          337 DHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK  416 (583)
Q Consensus       337 ~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~  416 (583)
                      +.++.+|||++.++|+.|+|||.+|+++|+||++   .               ...|.++++++++|+.+++|+|||.+ 
T Consensus        25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---~---------------~~~i~l~~v~~~~f~~ll~fiYtg~~-   85 (119)
T 3m5b_A           25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---R---------------GQWALGEGISPSTFAQLLNFVYGESV-   85 (119)
T ss_dssp             HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---C---------------EEEECCSSCCHHHHHHHHHHHTTCCE-
T ss_pred             HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---C---------------CCEEEeCCCCHHHHHHHHHHHcCCCc-
Confidence            4568999999999999999999999999999974   1               14689999999999999999999999 


Q ss_pred             CCCHHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 007949          417 DIDPDQAEEMFDAASRYLLFPLKRAVADVLLL  448 (583)
Q Consensus       417 ~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  448 (583)
                      .++.+++.+++.+|++|+++.|++.|++++.+
T Consensus        86 ~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           86 ELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             EECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            89999999999999999999999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.71  E-value=2.3e-17  Score=141.80  Aligned_cols=103  Identities=21%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~  113 (583)
                      ||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+.  +.++++
T Consensus        11 l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~   90 (123)
T 3aaa_C           11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK   90 (123)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999 577777  899999


Q ss_pred             HHHhCCCCCCCCCCcccCCccchhcccc
Q 007949          114 LLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus       114 ~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      +|+++|++++.  ++..|.||+|+|+..
T Consensus        91 ~Ll~~ga~~~~--~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           91 LLLSKGADKTV--KGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHTTCCTTC--CCTTSCCHHHHCCCH
T ss_pred             HHHHcCCCCCC--cCCCCCCHHHHhCCH
Confidence            99999999887  789999999999743

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.71  E-value=1.5e-17  Score=145.33  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=82.4

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|||+
T Consensus        15 ~l~~l~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~   84 (135)
T 2yy9_A           15 ELNKQREKGQYC------DATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGH   84 (135)
T ss_dssp             HHHHHHHTTTTC------CEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCc------ceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCC
Confidence            334455555555      999999999999999999999999999999876    4568889999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHH
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIE  261 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~  261 (583)
                      +.++.+++.+++.+|+.++++.|.+.+.
T Consensus        85 ~~i~~~~v~~ll~~A~~l~i~~L~~~C~  112 (135)
T 2yy9_A           85 LALTSGNRDQVLLAAKELRVPEAVELCQ  112 (135)
T ss_dssp             CCCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999887777766665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.71  E-value=4.7e-17  Score=142.59  Aligned_cols=107  Identities=28%  Similarity=0.401  Sum_probs=100.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKV  111 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i  111 (583)
                      ++||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+.  +.++
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            3489999999999999999999999999999999999999999999999999999999999999998 577777  8999


Q ss_pred             HHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          112 RKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       112 ~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|+++|++++.  .+..|.||||+|+..++
T Consensus        96 v~~Ll~~g~~~~~--~~~~g~tpl~~A~~~~~  125 (136)
T 2jab_A           96 AEVLLKHGADVNA--QDKFGKTAFDISIGNGN  125 (136)
T ss_dssp             HHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCCCcC--cCCCCCCHHHHHHHCCC
Confidence            9999999999877  68899999999998776

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.70  E-value=2.6e-17  Score=144.56  Aligned_cols=100  Identities=17%  Similarity=0.335  Sum_probs=84.4

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcC-CCCHHHHHHHhhhhcCC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE-KLSYPALYGLIHFFYSD  232 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~-~v~~~~~~~lL~ylYtg  232 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.+.  ..|.++ ++++++|+.+|+|+|||
T Consensus        26 ~l~~l~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg   97 (138)
T 2z8h_A           26 SLNDQRKKDVLC------DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTA   97 (138)
T ss_dssp             HHHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhCCCc------CeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCC
Confidence            444555565555      999999999999999999999999999999988764  467774 89999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHHHH
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRIIE  261 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~l~  261 (583)
                      .+.++.+++.+++.+|+.++++.|.+.+.
T Consensus        98 ~~~i~~~~v~~ll~~A~~~~i~~L~~~C~  126 (138)
T 2z8h_A           98 KLILSKDNVDEVCRCVEFLSVHNIEESCF  126 (138)
T ss_dssp             CCCCCTTTHHHHHHHHHHHTCGGGHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999888776666555443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.70  E-value=6.5e-17  Score=155.17  Aligned_cols=127  Identities=14%  Similarity=0.107  Sum_probs=113.9

Q ss_pred             cchhhhcc--cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCC-----CccCCCChhHHHHHHHhCCH
Q 007949            7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNV-----NARDQWDSVALYYACLAGHL   79 (583)
Q Consensus         7 ~~~~~~~~--~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~d~~g~t~L~~A~~~g~~   79 (583)
                      .++...+.  |+++|.+|..|+||        ||+|+..|+.+++++|++.|+++     +..|..|+||||+|+..|+.
T Consensus        17 ~~v~~Ll~~~g~~~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~   88 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRGAMGETA--------LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV   88 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCH
Confidence            34455554  89999999999999        89999999999999999999886     67788999999999999999


Q ss_pred             HHHHHHHhcCCCcCccCC-------------CCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           80 DAARMLLESGAICSEHTF-------------DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        80 ~~v~~Ll~~ga~~~~~~~-------------~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++++|+++|++++..+.             .|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus        89 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~t~L~~A~~~~~  166 (232)
T 2rfa_A           89 NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA--QDSLGNTVLHILILQPN  166 (232)
T ss_dssp             HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHTCSC
T ss_pred             HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            999999999999998765             6888 577777  89999999999999888  78999999999998776

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.70  E-value=9.3e-18  Score=155.55  Aligned_cols=119  Identities=10%  Similarity=0.082  Sum_probs=105.2

Q ss_pred             CCCCCCC-CCCCCCCCCCCcHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCChhHHHHHHHhCC------HHHHHH
Q 007949           16 IDLDASD-FSSSVPLKKVPNGDVFEASRAGDV----DRLRYILESGVNVNARDQWDSVALYYACLAGH------LDAARM   84 (583)
Q Consensus        16 ~din~~d-~~g~tpl~~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~------~~~v~~   84 (583)
                      .+++.++ ..|+||        ||+|+..|+.    +++++|+++|+++|.+|..|+||||+|+..|+      .+++++
T Consensus        28 ~~~~~~~~~~g~T~--------Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~   99 (186)
T 3t8k_A           28 KGYEDKESVLKSNI--------LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI   99 (186)
T ss_dssp             HSSSCHHHHHTTTH--------HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCcccccccCCCCH--------HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHH
Confidence            3456666 779999        8999999985    58999999999999999999999999999997      578999


Q ss_pred             HHhcCCCcCccCCCCc-hH-HHHHh-------hHHHHHHHHh-CCCCCCCCCCcccCCccchhccccccc
Q 007949           85 LLESGAICSEHTFDGD-RC-HYAAL-------NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~-t~-~~aa~-------~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      |+++|++++.+|..|. || |+++.       +.+++++|++ +|++++.  ++..|.||||+|+..++.
T Consensus       100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~--~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI--KDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC--CCTTSCCHHHHHHTTTCH
T ss_pred             HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc--cCCCCCCHHHHHHHcCCH
Confidence            9999999999999999 75 66665       3568999999 9999988  799999999999988873

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.69  E-value=1.2e-17  Score=144.11  Aligned_cols=98  Identities=17%  Similarity=0.363  Sum_probs=85.5

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCC-CCHHHHHHHhhhhcCC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREK-LSYPALYGLIHFFYSD  232 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~-v~~~~~~~lL~ylYtg  232 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.+  ...|.+++ +++++|+.+|+|+|||
T Consensus        22 ~l~~l~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg   93 (125)
T 3ohu_A           22 GLNDQRKKDILC------DVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTA   93 (125)
T ss_dssp             HHHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHhcCCcc------ceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence            344555555555      99999999999999999999999999999998877  56778888 9999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHH
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRI  259 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~  259 (583)
                      ++.++.+++.+++.+|+.++++.|.+.
T Consensus        94 ~~~~~~~~v~~ll~~A~~l~i~~L~~~  120 (125)
T 3ohu_A           94 KLLLSRENIREVIRCAEFLRMHNLEDS  120 (125)
T ss_dssp             EEEECTTTHHHHHHHHHHHTBSSCTTS
T ss_pred             ceEECHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999999887766543

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.69  E-value=8.3e-17  Score=136.60  Aligned_cols=93  Identities=20%  Similarity=0.360  Sum_probs=82.1

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      +..+..++.++      ||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+|+|+|||++
T Consensus        22 l~~~~~~~~~~------Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~   90 (116)
T 3fkc_A           22 LNEQRGHGLFC------DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKI   90 (116)
T ss_dssp             HHHHHHHTTTC------CEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCC
T ss_pred             HHHHHhcCCce------eEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCc
Confidence            33455555554      99999999999999999999999999999875     45788899999999999999999999


Q ss_pred             -cCChhhHHHHHHHHhHhchHHHHH
Q 007949          235 -EIAVDDMEDLVKICKVCKCESLQR  258 (583)
Q Consensus       235 -~i~~~~~~~ll~~a~~~~~~~l~~  258 (583)
                       .++.+++.+++.+|+.++++.|++
T Consensus        91 ~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           91 VRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCccccCc
Confidence             799999999999999998888764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.69  E-value=7.3e-17  Score=157.28  Aligned_cols=105  Identities=22%  Similarity=0.143  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~  113 (583)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.++++
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            67777777777777777777777777777777777777777777777777777777777777777 355555  677777


Q ss_pred             HHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          114 LLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       114 ~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|+++|++++.  ++..|.||+++|+..++
T Consensus       208 ~Ll~~ga~~~~--~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          208 VLLDHFANRDI--TDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             HHHHTTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCCccc--cccCCCCHHHHHHHcCC
Confidence            77777777666  56677777777777666

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.69  E-value=1.7e-16  Score=152.76  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCChhHHHHHHHhCCHHHHHHHHhc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN------VNARDQWDSVALYYACLAGHLDAARMLLES   88 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   88 (583)
                      |++++.+|..|+||        ||+|+..|+.+++++|++.|++      ++..+..|+||||+|+..|+.+++++|+++
T Consensus        68 g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  139 (236)
T 1ikn_D           68 GCDPELRDFRGNTP--------LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  139 (236)
T ss_dssp             CCCSCCCCTTCCCH--------HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45555555555555        6777777777777777766654      355566677777777777777777777777


Q ss_pred             CCCcCccCC-CCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           89 GAICSEHTF-DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        89 ga~~~~~~~-~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |++++..+. .|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus       140 g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR--VTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC--CCTTCCCGGGGCTTSSC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--ccCCCCCHHHHHHccCc
Confidence            777776665 6666 455555  66777777777776665  56667777777776555

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.69  E-value=4.2e-17  Score=151.79  Aligned_cols=118  Identities=17%  Similarity=0.162  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      ..+|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus        26 ~~~n~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   97 (192)
T 2rfm_A           26 FLRNYRDSYNRTP--------LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK   97 (192)
T ss_dssp             HHHTCCCTTCCCH--------HHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             HHHhCcCCCCCCH--------HHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            4468899999999        89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+||..++
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  146 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVND--RNLEGETPLIVASKYGR  146 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            999998 577777  89999999999999887  78899999999998776

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.68  E-value=3.3e-17  Score=139.90  Aligned_cols=98  Identities=17%  Similarity=0.332  Sum_probs=84.7

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      +..+..++.++      ||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+|+|+|||.+
T Consensus        18 l~~l~~~~~~~------Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~   86 (119)
T 2q81_A           18 LNQQRQLGLLC------DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKL   86 (119)
T ss_dssp             HHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCCCc------ceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCC
Confidence            33455555555      99999999999999999999999999999863     23466788999999999999999999


Q ss_pred             cCChhhHHHHHHHHhHhchHHHHHHHHHH
Q 007949          235 EIAVDDMEDLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       235 ~i~~~~~~~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      .++.+++.+++.+|+.++++.|.+.+...
T Consensus        87 ~i~~~~~~~ll~~A~~l~i~~L~~~C~~~  115 (119)
T 2q81_A           87 SLSPENVDDVLAVATFLQMQDIITACHAL  115 (119)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999998888887653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.68  E-value=1.4e-16  Score=152.68  Aligned_cols=125  Identities=27%  Similarity=0.320  Sum_probs=93.7

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      +...++ |++++.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        56 v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  127 (231)
T 3aji_A           56 VEFLLQLGVPVNDKDDAGWSP--------LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE  127 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCCCCCCH--------HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            333443 67777777777777        688888888888888888887777777778888888888888888888888


Q ss_pred             cCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           88 SGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        88 ~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|++++..+..|.| +|+++.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       128 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI--QDTEGNTPLHLACDEER  184 (231)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTC
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc--cCCCCCCHHHHHHHCCC
Confidence            88887777777777 466665  67777888887777766  56777788888876665

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.68  E-value=1.2e-17  Score=143.71  Aligned_cols=100  Identities=18%  Similarity=0.362  Sum_probs=83.8

Q ss_pred             cccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEc-CCCCHHHHHHHhhhhcCC
Q 007949          154 GISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSR-EKLSYPALYGLIHFFYSD  232 (583)
Q Consensus       154 ~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l-~~v~~~~~~~lL~ylYtg  232 (583)
                      .+..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.+++.++  ..+.+ .++++++|+.+|+|+|||
T Consensus        19 ~l~~l~~~~~~~------Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg   90 (124)
T 2ihc_A           19 SLNDQRKKDVLC------DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTA   90 (124)
T ss_dssp             HHHHHHHHTCSC------CEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCCc------CEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCC
Confidence            344555555555      999999999999999999999999999999988765  45777 489999999999999999


Q ss_pred             cccCChhhHHHHHHHHhHhchHHHHHHHH
Q 007949          233 RLEIAVDDMEDLVKICKVCKCESLQRIIE  261 (583)
Q Consensus       233 ~~~i~~~~~~~ll~~a~~~~~~~l~~~l~  261 (583)
                      .+.++.+++.+++.+|+.++++.|.+.+.
T Consensus        91 ~~~i~~~~v~~ll~~A~~~~~~~L~~~C~  119 (124)
T 2ihc_A           91 KLILSKENVDEVCKCVEFLSVHNIEESCF  119 (124)
T ss_dssp             EEEEETTTHHHHHHHHHHHTBSSCCGGGG
T ss_pred             CcccCHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            99999999999999999998777665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.68  E-value=2e-16  Score=148.09  Aligned_cols=126  Identities=16%  Similarity=0.189  Sum_probs=112.0

Q ss_pred             chhhhcc--cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~--~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .+...+.  +.++|..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        20 ~v~~ll~~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           20 KVKEILQDTTYQVDEVDTEGNTP--------LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             HHHHHHTCTTCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3444443  45899999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             H-hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCC-CCCCCCCCcccCCccchhcccccc
Q 007949           86 L-ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE-ARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l-~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~-~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      + ..+++++..+..|.| +|+++.  +.+++++|++.| .+++.  ++..|.||||.|+..+.
T Consensus        92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF--QNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC--CCTTSCCHHHHHHHSSC
T ss_pred             HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--CCCCCCCHHHHHHHhcc
Confidence            9 567899999999998 677777  899999999999 77777  68899999999997665

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.68  E-value=2e-16  Score=135.85  Aligned_cols=110  Identities=29%  Similarity=0.409  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-H
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C  102 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~  102 (583)
                      +|+||        ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.| +
T Consensus         1 ~g~t~--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l   72 (126)
T 1n0r_A            1 NGRTP--------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL   72 (126)
T ss_dssp             CCCCH--------HHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCccH--------HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHH
Confidence            47788        89999999999999999999999999999999999999999999999999999999999999998 5


Q ss_pred             HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          103 HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       103 ~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+++.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~  113 (126)
T 1n0r_A           73 HLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGH  113 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcChHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCc
Confidence            77776  89999999999999887  68899999999998766

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.68  E-value=1.4e-16  Score=152.67  Aligned_cols=126  Identities=21%  Similarity=0.215  Sum_probs=115.3

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |++++.+|..|+||        ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+
T Consensus        88 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           88 IVKALLVKGAHVNAVNQNGCTP--------LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3444444 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++|++++.++..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+.+++
T Consensus       160 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI--ENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHSCHHHH
T ss_pred             hcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHhhHH
Confidence            999999999999999 577776  89999999999999887  78999999999987665

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.67  E-value=3e-16  Score=149.91  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC-CCcCc
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG-AICSE   94 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~   94 (583)
                      .+++..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++.
T Consensus        98 ~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A           98 PDLNKITNQGVTC--------LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             CCTTCCCTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC
T ss_pred             cccccCCcCCCCH--------HHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC
Confidence            5666666666666        56677777777777777767666666666777777777777777777777666 66666


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHH-hCCCCCCCCCCcccCCccchhccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLK-AYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~-~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      .|..|.| +|+|+.  +.+++++|+ ++|++++.  ++..|.||+++|+.
T Consensus       170 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~--~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDNKGAKAEDVALN  217 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--BCTTSCBGGGGCSS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc--cCCCCCcHHHHHHH
Confidence            6666666 355554  666666666 66666665  56666677776654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.67  E-value=3.7e-17  Score=146.86  Aligned_cols=115  Identities=23%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF   97 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~   97 (583)
                      .+..+..|.||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++..+.
T Consensus         5 ~~~~~~~~~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~   75 (156)
T 1bi7_B            5 AGSSMEPSADW--------LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP   75 (156)
T ss_dssp             -----CCSTTH--------HHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT
T ss_pred             ccCCCccchHH--------HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC
Confidence            34567788999        89999999999999999999999999999999999996 9999999999999999999999


Q ss_pred             CCch-H-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           98 DGDR-C-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        98 ~g~t-~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .|.| | |+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus        76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~~~~~  123 (156)
T 1bi7_B           76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDV--RDAWGRLPVDLAEELGH  123 (156)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC--CCTTCCCHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHhCH
Confidence            9997 6 66666  89999999999999887  78899999999998776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.67  E-value=2.6e-16  Score=151.38  Aligned_cols=118  Identities=20%  Similarity=0.276  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      .+++..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus       102 ~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  173 (237)
T 3b7b_A          102 MDVNCQDDGGWTP--------MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV  173 (237)
T ss_dssp             CCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCC
T ss_pred             CCcccCCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc
Confidence            4555566666666        67777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       174 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~--~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTL--KNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTSCCHHHHSCTTCH
T ss_pred             CCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc--cCCCCCCHHHHHHHHHH
Confidence            777777 455555  67777777777777666  56777777777776665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.67  E-value=2.9e-16  Score=156.73  Aligned_cols=133  Identities=17%  Similarity=0.212  Sum_probs=114.0

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------------------
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ----------------------   64 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------------------   64 (583)
                      ++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++..|.                      
T Consensus        88 ~v~~Ll~~ga~~~~~~~~g~tp--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           88 MVKFLVENGANINQPDNEGWIP--------LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCcH--------HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            3444444 77788888888888        8999999999999999999998876653                      


Q ss_pred             --------------------------------------CChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHH
Q 007949           65 --------------------------------------WDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYA  105 (583)
Q Consensus        65 --------------------------------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~a  105 (583)
                                                            .|.||||+|+..|+.+++++|+++|++++..|..|.| +|+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             hhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence                                                  4678899999999999999999999999999999999 5777


Q ss_pred             Hh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhh
Q 007949          106 AL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAE  150 (583)
Q Consensus       106 a~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~  150 (583)
                      +.  +.+++++|+++|++++.  ++..|.|||++|+++...++....
T Consensus       240 ~~~~~~~~v~~Ll~~gad~~~--~d~~g~t~l~~A~~~~~~~l~~l~  284 (299)
T 1s70_B          240 AHWGKEEACRILVENLCDMEA--VNKVGQTAFDVADEDILGYLEELQ  284 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC--CCTTSCCTTTSCCSGGGHHHHHHH
T ss_pred             HhcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHHHHHHHHHHH
Confidence            77  89999999999999888  789999999999987776665533

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.67  E-value=2.2e-16  Score=157.59  Aligned_cols=126  Identities=22%  Similarity=0.249  Sum_probs=110.2

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...+. |+++|..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        55 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           55 EVLRLLERGADINYANVDGLTA--------LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHHHHHHHCCCTTCBCTTCCBH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCcccCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3445555 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCc------------------------------------------------------------h-HHHH
Q 007949           87 ESGAICSEHTFDGD------------------------------------------------------------R-CHYA  105 (583)
Q Consensus        87 ~~ga~~~~~~~~g~------------------------------------------------------------t-~~~a  105 (583)
                      ++|++++..+..|.                                                            | +|+|
T Consensus       127 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A  206 (299)
T 1s70_B          127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA  206 (299)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHH
T ss_pred             hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHH
Confidence            99999987765544                                                            4 3555


Q ss_pred             Hh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          106 AL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       106 a~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       207 ~~~g~~~~v~~Ll~~g~d~~~--~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          207 AAKGYTEVLKLLIQARYDVNI--KDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred             HHCCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHhcCC
Confidence            55  67889999999988877  68889999999998777

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.67  E-value=2.3e-16  Score=147.73  Aligned_cols=126  Identities=21%  Similarity=0.209  Sum_probs=114.0

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++...++ |++++.+|..|+||        ||+|+..|+.+++++|++ .+++++..|..|.||||+|+..|+.+++++|
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~--------l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  125 (201)
T 3hra_A           54 IAKALIDRGADINLQNSISDSP--------YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL  125 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHH
Confidence            3444555 89999999999999        899999999999999994 6789999999999999999999999999999


Q ss_pred             HhcC-CCcCccCCCCch-HHHHHh--h-----HHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESG-AICSEHTFDGDR-CHYAAL--N-----LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~g-a~~~~~~~~g~t-~~~aa~--~-----~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++| ++++..+..|.| +|+++.  +     .+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       126 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI--KDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTC
T ss_pred             HHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHHcCC
Confidence            9999 999999999999 577775  3     8999999999999888  78899999999998776

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.66  E-value=1.8e-16  Score=154.44  Aligned_cols=119  Identities=18%  Similarity=0.139  Sum_probs=75.5

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNARDQWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      |+++|.+|..|+||        ||+|+..|+.+++++|+++|+ +++..+..|+||||+|+..|+.+++++|+++|++++
T Consensus        80 g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           80 SADANIQDNMGRTP--------LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             TCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred             CCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence            55555555556666        566666666666666666554 566666666666666666666666666666666666


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGS  202 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHCCC
Confidence            66666666 355555  56666666666666655  45666677777665554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.66  E-value=2.7e-16  Score=155.22  Aligned_cols=119  Identities=21%  Similarity=0.276  Sum_probs=97.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ-WDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      +.+++.+|..|+||        ||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++
T Consensus       148 ~~~~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~  219 (282)
T 1oy3_D          148 RLQLEAENYDGHTP--------LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (282)
T ss_dssp             GGGTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhcCCCcCCCCcCH--------HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            67799999999999        8999999999999999999999999985 49999999999999999999999999999


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .++..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||++.|...+.
T Consensus       220 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE--DGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC--CC---------------
T ss_pred             ccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc--CCCcccccccccCCccc
Confidence            99999999 577776  89999999999999888  79999999999986554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=151.34  Aligned_cols=122  Identities=12%  Similarity=0.011  Sum_probs=103.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |++++..+..+.++     .++||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus         8 ~~~~~~~~~~~~~~-----~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~   82 (229)
T 2vge_A            8 AGSPRKARRARLNP-----LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS   82 (229)
T ss_dssp             --CCCCCCCTTSCH-----HHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCccccccccch-----hHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            56666555555444     2448999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCc-ccCCccchhc--ccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPL-QAALRDTFLG--CGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~-~~~~t~L~~A--~~~~~  143 (583)
                      .|..|.| +|+|+.  +.+++++|++.|++++.  .+ ..|.||||+|  +..++
T Consensus        83 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~~~~~g~tpL~~A~a~~~~~  135 (229)
T 2vge_A           83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFA--TTLSDGATAFEKCDPYREGY  135 (229)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCSSTTCCTGGGCCTTSTTH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHHhcCh
Confidence            9999998 577777  89999999999998877  44 6899999999  66555

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.66  E-value=3.8e-16  Score=150.44  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      +++..|..|+||        ||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..
T Consensus       108 ~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  179 (241)
T 1k1a_A          108 DLEARNYDGLTA--------LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ  179 (241)
T ss_dssp             CTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB
T ss_pred             cccccCcCCCcH--------HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            555555566666        677777777777777777777777766 66777777777777777777777777777777


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..++
T Consensus       180 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSL--KNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCTTTTCSSHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC--cCCCCCCHHHHHHhcCc
Confidence            777776 455555  67777777777777665  56677777777776544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.66  E-value=3.7e-16  Score=127.10  Aligned_cols=90  Identities=34%  Similarity=0.513  Sum_probs=83.1

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-H
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C  102 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~  102 (583)
                      +|+||        ||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +
T Consensus         1 ~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTP--------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL   72 (93)
T ss_dssp             --CCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCcH--------HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            37788        89999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             HHHHh--hHHHHHHHHhCCCC
Q 007949          103 HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus       103 ~~aa~--~~~i~~~L~~~~~~  121 (583)
                      |+++.  +.+++++|+++|++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           73 HLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            77776  89999999998874

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.66  E-value=9.7e-17  Score=136.55  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=79.2

Q ss_pred             CCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHH
Q 007949          168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI  247 (583)
Q Consensus       168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~  247 (583)
                      +.+|||+|.++|+.|+|||.||+++|+||++         ....|.++++++++|+.+|+|+|||++.++.+++.+++.+
T Consensus        28 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~a   98 (119)
T 3m5b_A           28 PALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEA   98 (119)
T ss_dssp             TTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHH
T ss_pred             CCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHH
Confidence            4466999999999999999999999999984         2456889999999999999999999999999999999999


Q ss_pred             HhHhchHHHHHHHHHH
Q 007949          248 CKVCKCESLQRIIEKE  263 (583)
Q Consensus       248 a~~~~~~~l~~~l~~~  263 (583)
                      |+.++++.|.+.|++.
T Consensus        99 A~~l~i~~l~~~C~~~  114 (119)
T 3m5b_A           99 ARALGVQSLEEACWRA  114 (119)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHH
Confidence            9999999998888754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.66  E-value=2.9e-16  Score=150.62  Aligned_cols=117  Identities=23%  Similarity=0.291  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-------------CChhHHHHHHHhCCHHHHHHH
Q 007949           19 DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ-------------WDSVALYYACLAGHLDAARML   85 (583)
Q Consensus        19 n~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-------------~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      +..|..|+||        ||+|+..|+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|
T Consensus        69 ~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  140 (232)
T 2rfa_A           69 TSELYEGQTA--------LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL  140 (232)
T ss_dssp             CSTTTTTCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred             cccCCCCcCH--------HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            7888899999        8999999999999999999999998875             799999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHH----HHHHhCCCCCCC----CCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVR----KLLKAYEARPPP----LGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~----~~L~~~~~~~~~----~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..|..|.| +|+|+.  +.+++    ++|+++|++...    ..++..|.||||+|+..++
T Consensus       141 l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            9999999999999999 577777  66665    999999998741    1267899999999998877

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.66  E-value=4e-16  Score=148.55  Aligned_cols=105  Identities=22%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK  113 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~  113 (583)
                      ||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.++++
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            45555555555555555555555555555555555555555555555555555555555555544 233333  444555


Q ss_pred             HHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          114 LLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       114 ~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|+++|++++.  ++..|.||+++|+..++
T Consensus       176 ~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          176 VLLDHFANRDI--TDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             HHHHTTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCCCcc--ccccCCCHHHHHHHhcc
Confidence            55555544444  34445555555554443

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.66  E-value=4.5e-17  Score=141.29  Aligned_cols=97  Identities=22%  Similarity=0.348  Sum_probs=83.3

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcC-CCCHHHHHHHhhhhcCCc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE-KLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~-~v~~~~~~~lL~ylYtg~  233 (583)
                      +..+..++.++      ||+|.++|+.|+|||.||+++|+||++||.++    ....|.++ ++++++|+.+|+|+|||.
T Consensus        24 l~~l~~~~~~~------Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~   93 (129)
T 3ga1_A           24 LNEQRLQGLYC------DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGR   93 (129)
T ss_dssp             HHHHHHTTCSC------CEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred             HHHHHhcCCCc------ceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence            33455555555      99999999999999999999999999999876    45678886 899999999999999999


Q ss_pred             ccCChhhHHHHHHHHhHhchHHHHHHHH
Q 007949          234 LEIAVDDMEDLVKICKVCKCESLQRIIE  261 (583)
Q Consensus       234 ~~i~~~~~~~ll~~a~~~~~~~l~~~l~  261 (583)
                      +.++.+++.+++.+|+.++++.|.+.+.
T Consensus        94 ~~i~~~~~~~ll~~A~~~~i~~l~~~C~  121 (129)
T 3ga1_A           94 LSMNVGDQDLLMYTAGFLQIQEIMEKGT  121 (129)
T ss_dssp             EECCTTTHHHHHHHHHHTTBTTSSCC--
T ss_pred             cccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999988777766554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.66  E-value=4e-16  Score=148.62  Aligned_cols=119  Identities=18%  Similarity=0.139  Sum_probs=70.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNARDQWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      |++++.+|..|+||        ||+|+..|+.+++++|+++++ +++..+..|+||||+|+..|+.+++++|+++|++++
T Consensus        48 g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  119 (223)
T 2f8y_A           48 SADANIQDNMGRTP--------LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN  119 (223)
T ss_dssp             TCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc
Confidence            45555555555555        566666666666666666554 555556666666666666666666666666666666


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..+..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A          120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGS  170 (223)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTC
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCcCHHHHHHHcCC
Confidence            66666665 344444  56666666666665555  45566666666665444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.66  E-value=1.6e-16  Score=153.46  Aligned_cols=126  Identities=18%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |++++.. ..|.||        ||+|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        19 ~~~~~ll~~g~~~~~~-~~~~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   89 (239)
T 1ycs_B           19 KTGSERIAHGMRVKFN-PLPLAL--------LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL   89 (239)
T ss_dssp             -------------------CHHH--------HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhccCCCcccC-chhhHH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45566666 7788753 567788        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCC-ccchhc--ccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAAL-RDTFLG--CGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~-t~L~~A--~~~~~  143 (583)
                      +++|++++..|..|.| +|+|+.  +.+++++|+++|++++.  .+..|. ||||+|  +..++
T Consensus        90 l~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~~~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B           90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA--MTYSDMQTAADKCEEMEEGY  151 (239)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCSSSCCCHHHHCCSSSTTC
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce--ecCCCCcchHHHHHHhhhcc
Confidence            9999999999999999 577777  89999999999999887  565555 999999  55555

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.66  E-value=1e-16  Score=143.98  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChh-HHHHHHHhCCHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~   84 (583)
                      .++...+. |+++|.+|..|+||        ||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|+.+++++
T Consensus        26 ~~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~   96 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPNSYGRRP--------IQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV   96 (156)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCT--------TTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCH--------HHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHH
Confidence            34445555 89999999999999        68885 89999999999999999999999999 9999999999999999


Q ss_pred             HHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchh
Q 007949           85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFL  137 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~  137 (583)
                      |+++|++++.+|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||.+.
T Consensus        97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~~~~  150 (156)
T 1bi7_B           97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG--SNHARIDAAEG  150 (156)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc--cCcCcCccccc
Confidence            99999999999999999 577776  89999999999999888  68888888764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.66  E-value=1.1e-16  Score=156.28  Aligned_cols=113  Identities=17%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-------------ChhHHHHHHHhCCHHHHHHHHh
Q 007949           21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQW-------------DSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus        21 ~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-------------g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      +|..|+||        ||+|+..|+.+++++|+++|++++.+|..             |+||||+|+..|+.+++++|++
T Consensus        86 ~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           86 EFYQGHSA--------LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             TTTTTCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            44779999        89999999999999999999999999876             9999999999999999999999


Q ss_pred             ---cCCCcCccCCCCch-HHHHHh----hHH-------HHHHHHhCCCCC-------CCCCCcccCCccchhcccccc
Q 007949           88 ---SGAICSEHTFDGDR-CHYAAL----NLK-------VRKLLKAYEARP-------PPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        88 ---~ga~~~~~~~~g~t-~~~aa~----~~~-------i~~~L~~~~~~~-------~~~~~~~~~~t~L~~A~~~~~  143 (583)
                         +|++++.+|..|.| +|+|+.    +.+       ++++|+++|+++       +.  ++..|.||||+|+..++
T Consensus       158 ~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~--~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          158 NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccc--cCCCCCCHHHHHHHhCC
Confidence               99999999999999 577775    455       999999999988       55  68899999999998887

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.65  E-value=2e-16  Score=152.36  Aligned_cols=170  Identities=15%  Similarity=0.087  Sum_probs=129.9

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++++.... ++++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        26 ~Ll~~~~~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   97 (236)
T 1ikn_D           26 EVIRQVKGDLAFLNFQNNLQQTP--------LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL   97 (236)
T ss_dssp             CCCC-----CCCCCCCCTTCCCH--------HHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHhhccHHHhhccCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            44444443 56899999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCC------cCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcc-cCCccchhccccccccchhhhhhhcc
Q 007949           86 LESGAI------CSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQ-AALRDTFLGCGANRQFLEEAEVVLGI  155 (583)
Q Consensus        86 l~~ga~------~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~l~~~~~~~~~  155 (583)
                      +++|++      ++..+..|.| +|+|+.  +.+++++|+++|++++.  .+. .|.||||+|+..++.-+-+       
T Consensus        98 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~A~~~~~~~~v~-------  168 (236)
T 1ikn_D           98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA--QEPCNGRTALHLAVDLQNPDLVS-------  168 (236)
T ss_dssp             HHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHH-------
T ss_pred             HhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHHHHH-------
Confidence            999976      4677888998 577777  89999999999999887  566 8999999999877621111       


Q ss_pred             cccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcC
Q 007949          156 SGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET  202 (583)
Q Consensus       156 ~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~  202 (583)
                       -|+..        ++|+...-.....+.|.++-.......+-++..
T Consensus       169 -~Ll~~--------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          169 -LLLKC--------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  206 (236)
T ss_dssp             -HHHTT--------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             -HHHHc--------CCCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence             12111        124444434445567766655555555555543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.65  E-value=5.2e-16  Score=140.86  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-H
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C  102 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~  102 (583)
                      .|.||        ||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +
T Consensus         2 ~~~t~--------L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   73 (167)
T 3v31_A            2 ANSLS--------VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL   73 (167)
T ss_dssp             TTCCC--------HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCcch--------HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            47788        89999999999999999999999999999999999999999999999999999999999999998 5


Q ss_pred             HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          103 HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       103 ~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+++.  +.+++++|+++|++++.  ++..|.||||.|+..++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  114 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVNE--YDWNGGTPLLYAVHGNH  114 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCc--CCCCCCCHHHHHHHcCC
Confidence            77777  89999999999999887  68899999999998776

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.65  E-value=2.6e-16  Score=155.41  Aligned_cols=126  Identities=15%  Similarity=0.089  Sum_probs=110.4

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCC----------------------------
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN----------------------------   58 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~----------------------------   58 (583)
                      ++...+. |++++.+|..|+||        ||+|+..|+.+++++|+++|++                            
T Consensus        60 ~v~~Ll~~ga~~~~~~~~g~tp--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (282)
T 1oy3_D           60 TVEKLYAAGAGVLVAERGGHTA--------LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD  131 (282)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCH--------HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------
T ss_pred             HHHHHHHcCCCCCCCCCCCCCH--------HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhc
Confidence            3344444 78888888888888        8999999999999999987754                            


Q ss_pred             -------------------CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCC-Cch-HHHHHh--hHHHHHHH
Q 007949           59 -------------------VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD-GDR-CHYAAL--NLKVRKLL  115 (583)
Q Consensus        59 -------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~t-~~~aa~--~~~i~~~L  115 (583)
                                         ++.+|..|+||||+|+..|+.+++++|+++|++++..+.. |.| +|+|+.  +.+++++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  211 (282)
T 1oy3_D          132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL  211 (282)
T ss_dssp             ------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHH
Confidence                               6778889999999999999999999999999999998854 888 577777  89999999


Q ss_pred             HhCCCCCCCCCCcccCCccchhcccccc
Q 007949          116 KAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       116 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++.  ++..|.||||+|+..++
T Consensus       212 l~~gad~~~--~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          212 LKAGADPTA--RMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             HHTTCCTTC--CCTTSCCHHHHHHTSSC
T ss_pred             HHcCCCCcc--cccCCCCHHHHHHHcCC
Confidence            999999888  78999999999998777

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.65  E-value=4.8e-16  Score=157.58  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             hhhcc-cCCCCC-CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCC---HHHHHH
Q 007949           10 DAELD-EIDLDA-SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH---LDAARM   84 (583)
Q Consensus        10 ~~~~~-~~din~-~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~---~~~v~~   84 (583)
                      ...++ |+++|. +|..|+||        ||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+   .++++.
T Consensus       114 ~~l~~~g~dvn~~~d~~g~Tp--------Lh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~  185 (327)
T 1sw6_A          114 DAFPNTQLNLNIPVDEHGNTP--------LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA  185 (327)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred             HHHHhcCCCcccccCCCCCcH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence            33444 799999 89999999        899999999999999999999999999999999999999887   566666


Q ss_pred             HHhcC-CCcCccCCCCch-HHHHHh------hHHHHHHHHhC
Q 007949           85 LLESG-AICSEHTFDGDR-CHYAAL------NLKVRKLLKAY  118 (583)
Q Consensus        85 Ll~~g-a~~~~~~~~g~t-~~~aa~------~~~i~~~L~~~  118 (583)
                      |++.+ ++++..+..|.| +|+|+.      +.+++++|++.
T Consensus       186 ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            66664 566666666666 455553      45555655544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.65  E-value=1.5e-16  Score=155.53  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC--------------CCChhHHHHHHHhCCHHH
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD--------------QWDSVALYYACLAGHLDA   81 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~t~L~~A~~~g~~~~   81 (583)
                      .+++..|..|+||        ||+|+..|+.+++++|+++|++++..+              ..|+||||+|+..|+.++
T Consensus        84 ~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A           84 SPFRDVYYRGQTA--------LHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             CCBCCSSEESBCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             ccccccccCCCCH--------HHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence            4456667789999        899999999999999999999999998              689999999999999999


Q ss_pred             HHHHHh---cCCCcCccCCCCch-HHHHHh--h---------HHHHHHHHhCCCCCCC-----CCCcccCCccchhcccc
Q 007949           82 ARMLLE---SGAICSEHTFDGDR-CHYAAL--N---------LKVRKLLKAYEARPPP-----LGPLQAALRDTFLGCGA  141 (583)
Q Consensus        82 v~~Ll~---~ga~~~~~~~~g~t-~~~aa~--~---------~~i~~~L~~~~~~~~~-----~~~~~~~~t~L~~A~~~  141 (583)
                      +++|++   +|++++.+|..|.| +|+|+.  +         .+++++|+++|++++.     ..++..|.||||+|+..
T Consensus       156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            999999   99999999999999 578775  2         5899999999998743     22688999999999998


Q ss_pred             cc
Q 007949          142 NR  143 (583)
Q Consensus       142 ~~  143 (583)
                      ++
T Consensus       236 g~  237 (260)
T 3jxi_A          236 GK  237 (260)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.65  E-value=1.5e-16  Score=155.09  Aligned_cols=123  Identities=15%  Similarity=-0.003  Sum_probs=109.5

Q ss_pred             chhhhcc-cCCCCC----CCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCc-----------cCCCChh
Q 007949            8 TIDAELD-EIDLDA----SDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNA-----------RDQWDSV   68 (583)
Q Consensus         8 ~~~~~~~-~~din~----~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~-----------~d~~g~t   68 (583)
                      +++..+. |+++|.    +|..|+||        ||+|+..   |+.+++++|++.|++++.           +|..|+|
T Consensus        21 ll~~l~~~g~~i~~~~~~~d~~g~t~--------L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t   92 (256)
T 2etb_A           21 LLEYLRWNSKYLTDSAYTEGSTGKTC--------LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS   92 (256)
T ss_dssp             HHHHHHHHTCCTTSGGGSBTTTTBCH--------HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCC
T ss_pred             HHHHHHHcCCCcccccccCCCCCCCH--------HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCC
Confidence            4455554 899998    89999999        8999999   999999999999877663           3478999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCcCccCCC-------------Cch-HHHHHh--hHHHHHHHHh---CCCCCCCCCCcc
Q 007949           69 ALYYACLAGHLDAARMLLESGAICSEHTFD-------------GDR-CHYAAL--NLKVRKLLKA---YEARPPPLGPLQ  129 (583)
Q Consensus        69 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-------------g~t-~~~aa~--~~~i~~~L~~---~~~~~~~~~~~~  129 (583)
                      |||+|+..|+.+++++|+++|++++..+..             |.| +|+|+.  +.+++++|++   +|++++.  ++.
T Consensus        93 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~--~d~  170 (256)
T 2etb_A           93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA--TDS  170 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc--cCC
Confidence            999999999999999999999999999886             888 577777  8999999999   8999887  788


Q ss_pred             cCCccchhccc
Q 007949          130 AALRDTFLGCG  140 (583)
Q Consensus       130 ~~~t~L~~A~~  140 (583)
                      .|.||||+||.
T Consensus       171 ~g~TpLh~A~~  181 (256)
T 2etb_A          171 LGNTVLHALVM  181 (256)
T ss_dssp             TSCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            99999999997

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.64  E-value=2.3e-16  Score=150.40  Aligned_cols=113  Identities=30%  Similarity=0.326  Sum_probs=104.2

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhc-CCCcCccCCCC
Q 007949           21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTFDG   99 (583)
Q Consensus        21 ~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g   99 (583)
                      .+..|.||        ||+||..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++..|..|
T Consensus        69 ~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g  140 (222)
T 3ehr_A           69 QAESIDNP--------LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG  140 (222)
T ss_dssp             HEEEESCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTS
T ss_pred             cccccccc--------cccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCC
Confidence            34566778        8999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             ch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          100 DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       100 ~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus       141 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~  185 (222)
T 3ehr_A          141 DTALHAAAWKGYADIVQLLLAKGARTDL--RNIEKKLAFDMATNAAC  185 (222)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCC--CCTTSCCHHHHCCSHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcc--ccCCCCCHHHHhcchhH
Confidence            99 577777  89999999999999888  78999999999997555

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=151.73  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=110.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        35 ~~v~~Ll~~g~~~~~~d~~g~tp--------Lh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~L  106 (229)
T 2vge_A           35 EVVQQAVKEMNDPSQPNEEGITA--------LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL  106 (229)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455555 88999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccC-CCCchH-HHH--Hh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccc
Q 007949           86 LESGAICSEHT-FDGDRC-HYA--AL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus        86 l~~ga~~~~~~-~~g~t~-~~a--a~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      +++|++++..+ ..|.|| |+|  +.  +.+++++|++.|++++.  .+..|.||++.++..
T Consensus       107 l~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~--~~~~~~~~l~~~~~~  166 (229)
T 2vge_A          107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL--MNSGAVYALWDYSAE  166 (229)
T ss_dssp             HTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT--SGGGEEEESSCBCCS
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc--ccCCchHHHHHHhhc
Confidence            99999999986 689985 665  44  89999999999998877  677888888865543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.64  E-value=1.1e-16  Score=147.98  Aligned_cols=111  Identities=24%  Similarity=0.193  Sum_probs=101.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC-CCCc
Q 007949           22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT-FDGD  100 (583)
Q Consensus        22 d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~  100 (583)
                      +..|+||        ||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.
T Consensus        41 ~~~g~t~--------L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~  111 (183)
T 3deo_A           41 VSEYETP--------WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHH--------HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSC
T ss_pred             CCCCCCH--------HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence            3456677        899999999999999999 99999999999999999999999999999999999999888 8899


Q ss_pred             h-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          101 R-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       101 t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      | +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELGADIEV--EDERGLTALELAREILK  155 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHHH
T ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcC--CCCCCCCHHHHHHHhcc
Confidence            8 577777  89999999999999887  78999999999997544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.64  E-value=8.9e-16  Score=134.39  Aligned_cols=105  Identities=24%  Similarity=0.353  Sum_probs=95.3

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .+++..++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L   99 (136)
T 2jab_A           28 DEVRILMANGADVNAKDEYGLTP--------LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL   99 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34445555 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCC
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE  119 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~  119 (583)
                      +++|++++..|..|.| +|+|+.  +.+++++|+++|
T Consensus       100 l~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999 566666  899999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.64  E-value=6.5e-16  Score=153.40  Aligned_cols=118  Identities=21%  Similarity=0.302  Sum_probs=78.1

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        82 g~~~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (285)
T 3d9h_A           82 GWAVNIITADHVSP--------LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP  153 (285)
T ss_dssp             TCCSCEECTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CCCCCCcCCCCCCH--------HHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence            56666666666666        5667777777777777766666666666667777777777777777777766666665


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+. |.| +|+|+.  +.+++++|+++|++++.  ++..|.||||.|+..++
T Consensus       154 ~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          154 ESD-LASPIHEAARRGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQ  202 (285)
T ss_dssp             SCT-TSCHHHHHHHHTCHHHHHHHHHTTCCTTC--CBTTTBCHHHHHHHTTC
T ss_pred             CCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCc
Confidence            443 555 455555  56677777777666655  56667777777776555

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.63  E-value=1.1e-15  Score=146.85  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC-CCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG-AICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~   93 (583)
                      |++++..|..|+||        ||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++| ++++
T Consensus        34 g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  105 (237)
T 3b7b_A           34 GANIDTCSEDQRTP--------LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN  105 (237)
T ss_dssp             TCCTTCCCTTCCCH--------HHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTT
T ss_pred             CCCcCccCCCCCCH--------HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcc
Confidence            45555555555555        45555555555555555555555555555555555555555555555555444 4444


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..+..|.| +|+++.  +.+++++|+++|++++.  ++..|.||||.|+..++
T Consensus       106 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A          106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAAFSGC  156 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHHCCC
Confidence            44444444 233333  44444555544444443  34444445554444333

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.63  E-value=3.8e-16  Score=136.75  Aligned_cols=105  Identities=20%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-ChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQW-DSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++...+. |+++|.+|..|+||        ||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|
T Consensus        27 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   97 (136)
T 1d9s_A           27 TVRQLLEAGADPNALNRFGRRP--------IQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL   97 (136)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCTT--------TTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCCcCCcCCCCCCH--------HHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4444554 89999999999999        699999 9999999999999999999999 99999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                      +++|++++..|..|.|| |+|+.  +.+++++|+++|++
T Consensus        98 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           98 HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999995 66666  89999999998874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.63  E-value=3.7e-16  Score=154.43  Aligned_cols=116  Identities=19%  Similarity=0.205  Sum_probs=87.9

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCC-CCCc-----------------------------------
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNA-----------------------------------   61 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~-----------------------------------   61 (583)
                      +|.+|..|+||        ||+|+..|+.+++++|++.|+ +++.                                   
T Consensus       104 ~n~~d~~g~T~--------Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~  175 (276)
T 4hbd_A          104 VNIADSNGNTA--------LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI  175 (276)
T ss_dssp             HTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT
T ss_pred             CcCCCCCCCCH--------HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC
Confidence            56666667777        566777777776666666665 4444                                   


Q ss_pred             ---cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCcc
Q 007949           62 ---RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRD  134 (583)
Q Consensus        62 ---~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~  134 (583)
                         .|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +|+|+.  +.+++++|++ .|++++.  ++..|.||
T Consensus       176 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~--~d~~g~Tp  253 (276)
T 4hbd_A          176 NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL--TDRDGSTA  253 (276)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC--CCTTSCCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC--cCCCCCCH
Confidence               4455778888888888888888888888888888888888 466666  7888888888 7888777  67888888


Q ss_pred             chhcccccc
Q 007949          135 TFLGCGANR  143 (583)
Q Consensus       135 L~~A~~~~~  143 (583)
                      ||+|+..++
T Consensus       254 L~~A~~~g~  262 (276)
T 4hbd_A          254 LMVALDAGQ  262 (276)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            888887766

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.63  E-value=2.3e-16  Score=156.70  Aligned_cols=122  Identities=19%  Similarity=0.113  Sum_probs=104.0

Q ss_pred             hhhcccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC
Q 007949           10 DAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG   89 (583)
Q Consensus        10 ~~~~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   89 (583)
                      ...+...++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|  |+||||+|+..|+.+++++|+++|
T Consensus        16 ~~lL~~~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           16 KSFLSSKDTFKADVHGHSA--------SYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             HHHHHSTTTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HHHHHhCCCCccCCCCCCH--------HHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCC
Confidence            3344445789999999999        799999999999999999998888874  889999999999999999999999


Q ss_pred             CCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccC-Cccchhcccccc
Q 007949           90 AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA-LRDTFLGCGANR  143 (583)
Q Consensus        90 a~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~-~t~L~~A~~~~~  143 (583)
                      ++++..+..|.| +|+|+.  +.+++++|+++|++++.  .+..| .||||.|+..++
T Consensus        86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG--CSSSGGGSHHHHHHHTTC
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc--cCCCCCCCHHHHHHHcCC
Confidence            999999999988 577776  88899999999888776  67777 799999998777

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.63  E-value=2.4e-16  Score=156.50  Aligned_cols=167  Identities=13%  Similarity=0.085  Sum_probs=129.6

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|  |+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        45 ~~v~~Ll~~g~~~~~~~--g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~L  114 (285)
T 3kea_A           45 RLVCTLLNAGALKNLLE--NEFP--------LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF  114 (285)
T ss_dssp             HHHHHHHHTTGGGSCCT--TCCH--------HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCC--CCCH--------HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            45666666 88999884  8999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCC-ch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccccc-chhhhhhhccccccc
Q 007949           86 LESGAICSEHTFDG-DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF-LEEAEVVLGISGVTS  160 (583)
Q Consensus        86 l~~ga~~~~~~~~g-~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~-l~~~~~~~~~~~l~~  160 (583)
                      +++|++++..+..| .| +|+|+.  +.+++++|+++|++..-   ...|.||||.|+..++.- ++-         |+.
T Consensus       115 l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~---------Ll~  182 (285)
T 3kea_A          115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIHITIKNGHVDMMIL---------LLD  182 (285)
T ss_dssp             HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHHHHHHTTCHHHHHH---------HHH
T ss_pred             HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHHHHHHcChHHHHHH---------HHH
Confidence            99999999999999 67 577777  89999999999987622   238999999999888722 111         000


Q ss_pred             CCCCCCCCCCCcEEEEECCEeEe-hhHHHHhhccHHHHHhhcCC
Q 007949          161 NGASNSDSFPPDVVFYVQGRPIE-AHRVILSARSVFFRRKFETD  203 (583)
Q Consensus       161 ~~~~~~~~~~~Dv~~~v~~~~~~-~Hk~iL~a~S~~f~~~~~~~  203 (583)
                      .+        +|+...-.....| .|-++-..+....+-++..+
T Consensus       183 ~g--------ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          183 YM--------TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             HH--------HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             cC--------CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence            00        0111111122333 78888777777777777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.63  E-value=6.4e-16  Score=153.47  Aligned_cols=159  Identities=19%  Similarity=0.190  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      ..++..|..|+||        ||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus        50 ~~~~~~~~~g~t~--------L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  121 (285)
T 3d9h_A           50 NPLMGDAVSDWSP--------MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV  121 (285)
T ss_dssp             CTTCSSSCCSCCH--------HHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC
T ss_pred             CcccCCCccCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC
Confidence            3467889999999        89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc-cchhhhhhhcccccccCCCCCCCCCCC
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ-FLEEAEVVLGISGVTSNGASNSDSFPP  171 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~  171 (583)
                      +..|.| +|+|+.  +.+++++|+++|+++..   ...|.||||.|+..++. .++.         |+..+        .
T Consensus       122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~---------Ll~~g--------~  181 (285)
T 3d9h_A          122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNS---------LIAYG--------G  181 (285)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC---SCTTSCHHHHHHHHTCHHHHHH---------HHHTT--------C
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCCHHHHHH---------HHHCC--------C
Confidence            999999 577776  89999999999998766   44599999999987762 2211         11111        1


Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhcC
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFET  202 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~  202 (583)
                      |+.........+.|.++.......++.++..
T Consensus       182 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          182 NIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            2222223344667777766655555555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.63  E-value=9.2e-16  Score=146.53  Aligned_cols=113  Identities=18%  Similarity=0.154  Sum_probs=72.2

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCC
Q 007949           21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG--VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD   98 (583)
Q Consensus        21 ~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~   98 (583)
                      .|..|+||        ||+|+..|+.+++++|+++|  ++++..|..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus        68 ~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  139 (228)
T 2dzn_A           68 PDDSGWTP--------FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF  139 (228)
T ss_dssp             CCTTSCCH--------HHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCCCCCH--------HHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC
Confidence            45555666        56666666666666666665  566666666666666666666666666666666666666666


Q ss_pred             Cch-HHHHHh--hHHHHHHHHhCC-CCCCCCCCcccCCccchhcccccc
Q 007949           99 GDR-CHYAAL--NLKVRKLLKAYE-ARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        99 g~t-~~~aa~--~~~i~~~L~~~~-~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |.| +|+|+.  +.+++++|++.| ++++.  ++..|.||||+|+..++
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNW--QDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCC--CCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccC--cCCCCCCHHHHHHHcCC
Confidence            666 355554  566666666666 55554  45666666666665554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.63  E-value=3.9e-16  Score=156.13  Aligned_cols=118  Identities=16%  Similarity=0.200  Sum_probs=100.2

Q ss_pred             hhhcc-cCCCCC------CCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCH
Q 007949           10 DAELD-EIDLDA------SDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHL   79 (583)
Q Consensus        10 ~~~~~-~~din~------~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   79 (583)
                      ...+. |+++|.      .|..|+||        ||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       168 ~~ll~~g~d~~~~~~~~~~~~~g~t~--------Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~  239 (301)
T 2b0o_E          168 LEAFANGQDFGQPLPGPDAQAPEELV--------LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP  239 (301)
T ss_dssp             HHHHHTTCCTTSCEECSSSCSCEECH--------HHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHhcCCcccccCCCcccCCCCccH--------HHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            33444 788888      68899999        8999997   899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           80 DAARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        80 ~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++++|+++|++++..|..|.|| |+|+.  +.+++++|+++|++        .|.||||+|+..++
T Consensus       240 ~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          240 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCC
Confidence            99999999999999999999995 66666  89999999998875        37899999998776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.62  E-value=1.8e-15  Score=137.69  Aligned_cols=109  Identities=27%  Similarity=0.325  Sum_probs=101.3

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hH
Q 007949           33 PNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NL  109 (583)
Q Consensus        33 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~  109 (583)
                      +.+.|++|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            344599999999999999999999999999999999999999999999999999999999999999998 577777  89


Q ss_pred             HHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          110 KVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       110 ~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++++|+++|++++.  .+..|.||||.||..++
T Consensus        94 ~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  125 (169)
T 2y1l_E           94 EIVEVLLKNGADVNA--NDMEGHTPLHLAAMFGH  125 (169)
T ss_dssp             HHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            999999999999887  68899999999998776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.62  E-value=7.2e-16  Score=162.71  Aligned_cols=161  Identities=19%  Similarity=0.158  Sum_probs=120.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |+++|..+..|+||        ||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus         4 g~~~~~~~~~g~t~--------L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   75 (437)
T 1n11_A            4 GISGGGGGESGLTP--------LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA   75 (437)
T ss_dssp             -----------CCH--------HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC
T ss_pred             CCCccccCCCCCCH--------HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            78899999999999        8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccccc-chhhhhhhcccccccCCCCCCCCCC
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF-LEEAEVVLGISGVTSNGASNSDSFP  170 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~  170 (583)
                      ++..|.| +|+|+.  +.+++++|+++|++++.  .+..|.||||.|+..++.- ++.         ++..+.       
T Consensus        76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~t~L~~A~~~g~~~~v~~---------Ll~~~~-------  137 (437)
T 1n11_A           76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLA---------LLEKEA-------  137 (437)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHHTCHHHHHH---------HHHTTC-------
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHHHcCCHHHHHH---------HHhCCC-------
Confidence            9999998 577777  89999999999999887  6888999999999887721 111         111111       


Q ss_pred             CcEEEEECCEeEehhHHHHhhccHHHHHhhcC
Q 007949          171 PDVVFYVQGRPIEAHRVILSARSVFFRRKFET  202 (583)
Q Consensus       171 ~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~  202 (583)
                       |+.........+.|.++.......++.++..
T Consensus       138 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  168 (437)
T 1n11_A          138 -SQACMTKKGFTPLHVAAKYGKVRVAELLLER  168 (437)
T ss_dssp             -CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence             1111112234577877777777777776654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.62  E-value=1.7e-15  Score=145.93  Aligned_cols=119  Identities=20%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCC----
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA----   90 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga----   90 (583)
                      |.++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+    
T Consensus        36 ~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  107 (241)
T 1k1a_A           36 GRELDIYNNLRQTP--------LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL  107 (241)
T ss_dssp             TCCSCCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSC
T ss_pred             CCCCCcccccCCCH--------HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            56666666666666        455555555555555555555555555555555555555555555555555554    


Q ss_pred             CcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCc-ccCCccchhcccccc
Q 007949           91 ICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPL-QAALRDTFLGCGANR  143 (583)
Q Consensus        91 ~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~-~~~~t~L~~A~~~~~  143 (583)
                      +++..+..|.| +|+++.  +.+++++|++.|++++.  .+ ..|.||||.|+..++
T Consensus       108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A          108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA--VDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTC
T ss_pred             cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--ccccCCCcHHHHHHHcCC
Confidence            45555555554 344443  45555555555554444  23 345555555554444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.61  E-value=8.5e-16  Score=151.38  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=104.2

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------------CChhHHHHHHHhCCHHHHHHHH
Q 007949           21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ--------------WDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus        21 ~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~--------------~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +|..|+||        ||+|+..|+.+++++|+++|++++.++.              .|+||||+|+..|+.+++++|+
T Consensus        97 ~d~~g~tp--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A           97 SYYKGQTA--------LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             TTTTTCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            67789999        8999999999999999999999999997              7999999999999999999999


Q ss_pred             h---cCCCcCccCCCCch-HHHHHh--h---------HHHHHHHHhCCCCCCC-----CCCcccCCccchhcccccc
Q 007949           87 E---SGAICSEHTFDGDR-CHYAAL--N---------LKVRKLLKAYEARPPP-----LGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        87 ~---~ga~~~~~~~~g~t-~~~aa~--~---------~~i~~~L~~~~~~~~~-----~~~~~~~~t~L~~A~~~~~  143 (583)
                      +   +|++++.+|..|.| +|+|+.  +         .+++++|+++|++++.     ..++..|.||||+|+..++
T Consensus       169 ~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          169 QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9   99999999999999 577776  3         6899999999998763     1267889999999998887

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.61  E-value=1.4e-15  Score=160.49  Aligned_cols=119  Identities=19%  Similarity=0.178  Sum_probs=95.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      |+++|..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       268 ~~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          268 QANGNLGNKSGLTP--------LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             TCCTTCCCTTCCCH--------HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence            56666666666666        7888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||+++|+..++
T Consensus       340 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~--~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE--VSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCSSSCCHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCc
Confidence            8888887 466666  78888888888888777  67788888888887665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.61  E-value=5e-16  Score=159.81  Aligned_cols=117  Identities=13%  Similarity=0.111  Sum_probs=109.0

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCC---
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAG--DVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI---   91 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---   91 (583)
                      +++..|..|+||        ||+|+..|  +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++   
T Consensus       130 ~~~~~~~~g~t~--------L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  201 (364)
T 3ljn_A          130 GSHVKHCKGQTA--------LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS  201 (364)
T ss_dssp             TTEEEEESCCCH--------HHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred             ccccCCCCCCCH--------HHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence            344488899999        89999999  99999999999999999999999999999999999999999999999   


Q ss_pred             --cCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           92 --CSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        92 --~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                        ++..+..|.| +|+|+.  +.+++++|+++|++++.  .+..|.||||+|+..++
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~--~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM--EDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC--CCTTSCCHHHHHHHTCC
T ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHhCh
Confidence              9999999998 688887  89999999999999887  78999999999998776

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.61  E-value=4.6e-16  Score=153.77  Aligned_cols=146  Identities=14%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC--CCccCCCChhHHHHHHHhCCHHHHHHHHhcCC-CcCccCCCCch-HHHHH-----h
Q 007949           37 VFEASRAGDVDRLRYILESGVN--VNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEHTFDGDR-CHYAA-----L  107 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t-~~~aa-----~  107 (583)
                      +|.|+..|+.+.++.++..+.+  +|.+|..|+||||+|+..|+.+++++|++.|+ +++..+..|.| +|+++     .
T Consensus        80 l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~  159 (276)
T 4hbd_A           80 AHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKT  159 (276)
T ss_dssp             CCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhh
Confidence            6999999999999999987766  89999999999999999999999999999998 99999999998 57777     2


Q ss_pred             --hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccccc-chhhhhhhcccccccCCCCCCCCCCCcEEEEECCEeEeh
Q 007949          108 --NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF-LEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEA  184 (583)
Q Consensus       108 --~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~  184 (583)
                        +.+++++|+..|.....  .+..|.||||.||..++.- ++-         |+..+        +|+...-.....|.
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~--~~~~g~tpLh~A~~~g~~~~v~~---------Ll~~g--------ad~n~~d~~G~TpL  220 (276)
T 4hbd_A          160 QDDIETVLQLFRLGNINAK--ASQAGQTALMLAVSHGRVDVVKA---------LLACE--------ADVNVQDDDGSTAL  220 (276)
T ss_dssp             HHHHHHHHHHHHHSCTTCC--CTTTCCCHHHHHHHTTCHHHHHH---------HHHTT--------CCTTCCCTTSCCHH
T ss_pred             hhhHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHH---------HHhCC--------CCCCCCCCCCCCHH
Confidence              67888889988876665  5778899999999877621 111         11111        13333334456788


Q ss_pred             hHHHHhhccHHHHHhhc
Q 007949          185 HRVILSARSVFFRRKFE  201 (583)
Q Consensus       185 Hk~iL~a~S~~f~~~~~  201 (583)
                      |.++...+....+-++.
T Consensus       221 h~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          221 MCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHTCHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHh
Confidence            88888888888888887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.61  E-value=2e-16  Score=154.62  Aligned_cols=184  Identities=12%  Similarity=0.007  Sum_probs=128.7

Q ss_pred             chhhhcc-cCCCCCCC----CCCCCCCCCCCcHHHHHHH---HcCCHHHHHHHHHcCCC-----------CCccCCCChh
Q 007949            8 TIDAELD-EIDLDASD----FSSSVPLKKVPNGDVFEAS---RAGDVDRLRYILESGVN-----------VNARDQWDSV   68 (583)
Q Consensus         8 ~~~~~~~-~~din~~d----~~g~tpl~~~~~~~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~t   68 (583)
                      +++..+. |.+++..+    ..|+||        ||+|+   ..|+.+++++|++.|++           ++..|..|+|
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~--------L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t   95 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTC--------LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT   95 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCH--------HHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBC
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcH--------HHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCC
Confidence            4444444 77888666    779999        89999   67999999999997743           4556669999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCcCccC--------------CCCch-HHHHHh--hHHHHHHHHh---CCCCCCCCCCc
Q 007949           69 ALYYACLAGHLDAARMLLESGAICSEHT--------------FDGDR-CHYAAL--NLKVRKLLKA---YEARPPPLGPL  128 (583)
Q Consensus        69 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~t-~~~aa~--~~~i~~~L~~---~~~~~~~~~~~  128 (583)
                      |||+|+..|+.+++++|+++|++++..+              ..|.| +|+|+.  +.+++++|++   .|++++.  ++
T Consensus        96 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~--~d  173 (260)
T 3jxi_A           96 ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR--QD  173 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc--cC
Confidence            9999999999999999999999999998              67888 577777  8999999999   8888887  78


Q ss_pred             ccCCccchhccccccccchhhhhhhcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhc
Q 007949          129 QAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE  201 (583)
Q Consensus       129 ~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~  201 (583)
                      ..|.||||+||..++...+.......+..++.+....-+.....+...-.....+.|.++-..+....+.++.
T Consensus       174 ~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR  246 (260)
T ss_dssp             TTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999976653322222221222111110000000000001122334567888777777676666664

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.61  E-value=2.8e-15  Score=147.82  Aligned_cols=129  Identities=17%  Similarity=0.203  Sum_probs=114.9

Q ss_pred             cchhhhcc-cCCCCCC-CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHH
Q 007949            7 STIDAELD-EIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~-d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~   84 (583)
                      .++...++ |.++|.. +..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        19 ~~v~~Ll~~g~~~~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (285)
T 1wdy_A           19 DLVQQLLEGGANVNFQEEEGGWTP--------LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL   90 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCcH--------HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            44555555 7889988 8889999        899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCC--------cccCCccchhcccccc
Q 007949           85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGP--------LQAALRDTFLGCGANR  143 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~--------~~~~~t~L~~A~~~~~  143 (583)
                      |+++|++++..+..|.| +|+++.  +.+++++|++.|++++....        +..|.||||.||..++
T Consensus        91 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             HHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            99999999999999998 577776  89999999999998877321        5679999999998776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.61  E-value=5.3e-16  Score=131.49  Aligned_cols=105  Identities=25%  Similarity=0.353  Sum_probs=95.6

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCC
Q 007949           20 ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG   99 (583)
Q Consensus        20 ~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   99 (583)
                      .+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|
T Consensus         4 ~~d~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g   75 (115)
T 2l6b_A            4 WGSKDGNTP--------LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG   75 (115)
T ss_dssp             CCSCSSCCH--------HHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTC
T ss_pred             ccCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence            468899999        899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCcc
Q 007949          100 DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRD  134 (583)
Q Consensus       100 ~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~  134 (583)
                      .| +|+|+.  +.+++++|+++|++++.  ++..|.||
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n~--~~~~~~~~  111 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKGADVNA--RSWGSSHH  111 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTSSSHHH--HSCCCC--
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCc--CCcccccc
Confidence            98 577777  89999999999999877  56666665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.60  E-value=2.8e-15  Score=133.91  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=98.6

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHH
Q 007949           34 NGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLK  110 (583)
Q Consensus        34 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~  110 (583)
                      .++||.|+..|+.+++++|++.|++++ .|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+.  +.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            455999999999999999999999887 5889999999999999999999999999999999999998 577777  899


Q ss_pred             HHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          111 VRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       111 i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++++|+++|++++.  ++..|.||||.|+..++
T Consensus        82 ~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  112 (153)
T 1awc_B           82 IVEVLLKHGADVNA--KDMLKMTALHWATEHNH  112 (153)
T ss_dssp             HHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            99999999999887  78899999999998776

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.60  E-value=1.5e-15  Score=138.58  Aligned_cols=118  Identities=20%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        50 ~~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  121 (172)
T 3v30_A           50 ETVRFLLEWGADPHILAKERESA--------LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL  121 (172)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCH--------HHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCchhhcccCCCH--------HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455555 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCCCCCcccCCcc
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRD  134 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~  134 (583)
                      +++|++++..+..|.|| |+|+.  +.+++++|++++++...  ++..|.||
T Consensus       122 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~--~~~~~~~p  171 (172)
T 3v30_A          122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ--SNLVPADP  171 (172)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC--C-------
T ss_pred             HHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc--ccCCCCCC
Confidence            99999999999999995 66666  89999999999987665  45555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.60  E-value=1e-15  Score=150.86  Aligned_cols=128  Identities=17%  Similarity=0.080  Sum_probs=108.2

Q ss_pred             cchhhhcc-cCCCC----CCCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCC-------Cc----cCCCCh
Q 007949            7 STIDAELD-EIDLD----ASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNV-------NA----RDQWDS   67 (583)
Q Consensus         7 ~~~~~~~~-~~din----~~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~----~d~~g~   67 (583)
                      ++++...+ +.+++    ..|..|+||        ||+|+..   |+.+++++|++.|+++       +.    .|..|+
T Consensus        31 ~Ll~~~~~~~~~~~~~~~~~~~~g~tp--------L~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~  102 (273)
T 2pnn_A           31 SLLPFLQRSKKRLTDSEFKDPETGKTC--------LLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ  102 (273)
T ss_dssp             THHHHHHHSCCCTTSGGGSCTTTCCCH--------HHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTC
T ss_pred             HHHHHHhhcccccCCcccccCcCCCCH--------HHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCC
Confidence            34444443 56666    458899999        8999987   9999999999987542       22    667899


Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCcCccCC--------------CCch-HHHHHh--hHHHHHHHHh---CCCCCCCCCC
Q 007949           68 VALYYACLAGHLDAARMLLESGAICSEHTF--------------DGDR-CHYAAL--NLKVRKLLKA---YEARPPPLGP  127 (583)
Q Consensus        68 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--------------~g~t-~~~aa~--~~~i~~~L~~---~~~~~~~~~~  127 (583)
                      ||||+|+..|+.+++++|+++|++++..+.              .|.| +|+|+.  +.+++++|++   .|++++.  +
T Consensus       103 tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~--~  180 (273)
T 2pnn_A          103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA--R  180 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--C
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee--e
Confidence            999999999999999999999999999987              7888 577777  8999999999   8998887  7


Q ss_pred             cccCCccchhccccccc
Q 007949          128 LQAALRDTFLGCGANRQ  144 (583)
Q Consensus       128 ~~~~~t~L~~A~~~~~~  144 (583)
                      +..|.||||+||..++.
T Consensus       181 d~~g~tpLh~A~~~~~~  197 (273)
T 2pnn_A          181 DSVGNTVLHALVEVADN  197 (273)
T ss_dssp             CTTSCCHHHHHHHHCCS
T ss_pred             CCCCCcHHHHHHHccCc
Confidence            88999999999987764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.60  E-value=1.9e-15  Score=155.50  Aligned_cols=168  Identities=12%  Similarity=0.060  Sum_probs=121.1

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc-------------------------
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA-------------------------   61 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------------------   61 (583)
                      ++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.                         
T Consensus        35 ~v~~Ll~~g~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  106 (364)
T 3ljn_A           35 EVRRLIETGVSPTIQNRFGCTA--------LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG  106 (364)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCH--------HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccCCCCCcH--------HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            3444554 88999999999999        5666666666666666666655444                         


Q ss_pred             ---------------------------cCCCChhHHHHHHHhC--CHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hH
Q 007949           62 ---------------------------RDQWDSVALYYACLAG--HLDAARMLLESGAICSEHTFDGDR-CHYAAL--NL  109 (583)
Q Consensus        62 ---------------------------~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~  109 (583)
                                                 .|..|+||||+|+..|  +.+++++|+++|++++..|..|.| +|+|+.  +.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~  186 (364)
T 3ljn_A          107 AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR  186 (364)
T ss_dssp             HHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH
Confidence                                       7778899999999999  999999999999999999999998 577776  89


Q ss_pred             HHHHHHHhCCCC-----CCCCCCcccCCccchhccccccccchhhhhhhcccccccCCCCCCCCCCCcEEEEECCEeEeh
Q 007949          110 KVRKLLKAYEAR-----PPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEA  184 (583)
Q Consensus       110 ~i~~~L~~~~~~-----~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~  184 (583)
                      +++++|+++|++     ++.  .+..|.||||+||..++.-+-+        -|+..        ++|+...-.....+.
T Consensus       187 ~~v~~Ll~~g~~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~--------gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          187 EALDLMMDTVPSKSSLRLDY--ANKQGNSHLHWAILINWEDVAM--------RFVEM--------GIDVNMEDNEHTVPL  248 (364)
T ss_dssp             HHHHHHHHHCSCSSSCCTTC--CCTTCCCTTHHHHTTTCHHHHH--------HHHTT--------TCCTTCCCTTSCCHH
T ss_pred             HHHHHHHhcccccccccccc--cCCCCCcHHHHHHHcCCHHHHH--------HHHHc--------CCCCCCCCCCCCCHH
Confidence            999999998887     665  6788999999999877731111        11111        124433334445667


Q ss_pred             hHHHHhhccHHHHHhhc
Q 007949          185 HRVILSARSVFFRRKFE  201 (583)
Q Consensus       185 Hk~iL~a~S~~f~~~~~  201 (583)
                      |-++-.......+-++.
T Consensus       249 ~~A~~~g~~~~v~~Ll~  265 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQ  265 (364)
T ss_dssp             HHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHH
Confidence            77666655555555554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.60  E-value=4.2e-15  Score=136.58  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=100.0

Q ss_pred             CCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch
Q 007949           23 FSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR  101 (583)
Q Consensus        23 ~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  101 (583)
                      ..+.+|        ||.|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus         3 ~~~~~~--------l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (179)
T 3f6q_A            3 PEFMDD--------IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT   74 (179)
T ss_dssp             ----CC--------HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHH--------HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            346777        8999999999999999997 6789999999999999999999999999999999999999999998


Q ss_pred             -HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       102 -~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                       +|+|+.  +.+++++|+++|++++.  ++..|.||||.|+..++
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~  117 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQ  117 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCC
Confidence             577777  89999999999999888  68899999999998776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.60  E-value=2.8e-15  Score=152.67  Aligned_cols=173  Identities=23%  Similarity=0.212  Sum_probs=134.7

Q ss_pred             hhhhcc--cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            9 IDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         9 ~~~~~~--~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +...+.  +.++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        40 v~~ll~~~~~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  111 (351)
T 3utm_A           40 LMALLTPLNVNCHASDGRKSTP--------LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL  111 (351)
T ss_dssp             HHHHCCTTTTTCCCSSTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCcccCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH
Confidence            344443  78899999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCC-------------------------------------
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLG-------------------------------------  126 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~-------------------------------------  126 (583)
                      ++|++++..+..|.| +|+|+.  +.+++++|+++|+++....                                     
T Consensus       112 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (351)
T 3utm_A          112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL  191 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccH
Confidence            999999999999998 577776  8999999999998876521                                     


Q ss_pred             ---------------CcccCCccchhcccccccc-chhhhhhhcccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHh
Q 007949          127 ---------------PLQAALRDTFLGCGANRQF-LEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILS  190 (583)
Q Consensus       127 ---------------~~~~~~t~L~~A~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~  190 (583)
                                     ....|.||||.|+..++.- .+--..      +...+        .|+...-.....+.|.++-.
T Consensus       192 ~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~------Ll~~g--------~~~~~~~~~g~t~L~~A~~~  257 (351)
T 3utm_A          192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL------LLRKG--------ANVNEKNKDFMTPLHVAAER  257 (351)
T ss_dssp             HHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHH------HHHTT--------CCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHH------HHHcC--------CCcCCcCCCCCCHHHHHHHc
Confidence                           2356789999999886631 111111      11111        12222223345688988888


Q ss_pred             hccHHHHHhhcCC
Q 007949          191 ARSVFFRRKFETD  203 (583)
Q Consensus       191 a~S~~f~~~~~~~  203 (583)
                      .....++-++..+
T Consensus       258 g~~~~v~~Ll~~g  270 (351)
T 3utm_A          258 AHNDVMEVLHKHG  270 (351)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCC
Confidence            8888888887654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.59  E-value=3.9e-15  Score=127.77  Aligned_cols=101  Identities=24%  Similarity=0.349  Sum_probs=89.9

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...+. |.++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        21 ~~v~~ll~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~L   92 (123)
T 3aaa_C           21 DEVKDYVAKGEDVNRTLEGGRKP--------LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL   92 (123)
T ss_dssp             HHHHHHHHTTCCTTSCCTTSSCH--------HHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCcCccCCCCCcH--------HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455555 88999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchHHHHHhhHHHHHHH
Q 007949           86 LESGAICSEHTFDGDRCHYAALNLKVRKLL  115 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~~~aa~~~~i~~~L  115 (583)
                      +++|++++..|..|.||...|...++.++|
T Consensus        93 l~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           93 LSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            999999999999999976666655555554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=139.13  Aligned_cols=127  Identities=19%  Similarity=0.161  Sum_probs=112.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~   84 (583)
                      .++...++ |++++.+|..|.||        ||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+.+++++
T Consensus        23 ~~~~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~   94 (240)
T 3eu9_A           23 ERCRELVEAGYDVRQPDKENVTL--------LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ   94 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCH--------HHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHH
Confidence            45555665 88999999999999        899999999999999999999987655 459999999999999999999


Q ss_pred             HHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+++|++++..+..|.| +|+++.  +.+++++|+++|++++.  .+..|.||||.|+..++
T Consensus        95 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCC
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHHHhCC
Confidence            99999999999999998 577776  89999999999998877  68899999999996555

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.59  E-value=1.4e-15  Score=147.31  Aligned_cols=108  Identities=25%  Similarity=0.208  Sum_probs=99.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC-CCCch
Q 007949           23 FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT-FDGDR  101 (583)
Q Consensus        23 ~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~t  101 (583)
                      ..|.||        ||+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.|
T Consensus        43 ~~g~t~--------L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t  113 (244)
T 3ui2_A           43 SEYETP--------WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHH--------HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             cCCCCH--------HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCC
Confidence            356677        899999999999999999 99999999999999999999999999999999999999988 78998


Q ss_pred             -HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccc
Q 007949          102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus       102 -~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                       +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIEV--EDERGLTALELAREI  154 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHHHH
Confidence             577777  89999999999999887  789999999999953

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.58  E-value=7.7e-15  Score=125.88  Aligned_cols=106  Identities=33%  Similarity=0.485  Sum_probs=96.4

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |++++..|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        17 ~v~~Ll~~~~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   88 (126)
T 1n0r_A           17 VVKLLLEAGADVNAKDKNGRTP--------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (126)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCcH--------HHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            3444444 78899999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           87 ESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                      ++|++++..+..|.|| |+|+.  +.+++++|+++|++
T Consensus        89 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999995 66665  89999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.58  E-value=2.6e-15  Score=144.92  Aligned_cols=129  Identities=17%  Similarity=0.167  Sum_probs=107.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        51 ~~v~~Ll~~g~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  122 (239)
T 1ycs_B           51 DLVQRIIYEVDDPSLPNDEGITA--------LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL  122 (239)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCH--------HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34555665 88999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCc-hH-HHH--Hh--hHHHHHHHHhCCCCCCCCCC-------cccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGD-RC-HYA--AL--NLKVRKLLKAYEARPPPLGP-------LQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~-t~-~~a--a~--~~~i~~~L~~~~~~~~~~~~-------~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..+..|. || |.+  +.  +.+++++|+.+|++++....       +..+.++++++...+.
T Consensus       123 l~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999999999998887 85 554  22  68999999999988776211       2345566666654443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.58  E-value=6.9e-15  Score=132.53  Aligned_cols=106  Identities=27%  Similarity=0.320  Sum_probs=95.3

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        52 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  123 (162)
T 1ihb_A           52 IARRLLLRGANPDLKDRTGFAV--------IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV  123 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4444554 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC-cCccCCCCchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           87 ESGAI-CSEHTFDGDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        87 ~~ga~-~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                      ++|++ ++..+..|.|| |+|+.  +.+++++|+++|++
T Consensus       124 ~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99998 59999999995 66666  89999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.58  E-value=9.6e-15  Score=148.72  Aligned_cols=116  Identities=22%  Similarity=0.173  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT   96 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~   96 (583)
                      .+..+..|.+|        ||.|+..|+.+.++.++. .+++++..|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        17 ~~~~~~~~~~~--------L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   88 (351)
T 3utm_A           17 AVLTGEYKKDE--------LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD   88 (351)
T ss_dssp             HHHHHHHHHHH--------HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             eeeeccccchh--------HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            34445566777        899999999999998887 589999999999999999999999999999999999999999


Q ss_pred             CCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           97 FDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        97 ~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ..|.| +|+|+.  +.+++++|+++|++++.  .+..|.||||+|+..++
T Consensus        89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           89 KGGLVPLHNACSYGHYEVTELLLKHGACVNA--MDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            99998 577777  89999999999999887  68899999999998887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.57  E-value=5.4e-15  Score=133.78  Aligned_cols=106  Identities=25%  Similarity=0.375  Sum_probs=94.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        56 ~~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  127 (165)
T 3twr_A           56 SVVEYLLQHGADVHAKDKGGLVP--------LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL  127 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCH--------HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34445555 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh-hHHHHHHHHhCCC
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL-NLKVRKLLKAYEA  120 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~-~~~i~~~L~~~~~  120 (583)
                      +++|++++.+|..|.|| |+++. +.+++++|++.|+
T Consensus       128 l~~ga~~~~~~~~g~t~l~~a~~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          128 LQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHTTCCTTCCCTTSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred             HHcCCCCcccCCCCCChhHhHhcCChHHHHHHhhccc
Confidence            99999999999999995 55444 8899999998875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.57  E-value=2.7e-15  Score=154.93  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=129.6

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC---CC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG---AI   91 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~   91 (583)
                      |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|   ++
T Consensus       156 ga~vn~~d~~g~Tp--------L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          156 GADVNAMDCDENTP--------LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             CCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             CCCCcCCCCCCCCH--------HHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence            89999999999999        89999999999999999999999999999999999999999999999999998   89


Q ss_pred             cCccCCCCch-HHHHHh-----hHHHHHHHHhCCCCCCCCC------CcccCCccchhccccccc-cchhhhhhhccccc
Q 007949           92 CSEHTFDGDR-CHYAAL-----NLKVRKLLKAYEARPPPLG------PLQAALRDTFLGCGANRQ-FLEEAEVVLGISGV  158 (583)
Q Consensus        92 ~~~~~~~g~t-~~~aa~-----~~~i~~~L~~~~~~~~~~~------~~~~~~t~L~~A~~~~~~-~l~~~~~~~~~~~l  158 (583)
                      ++..+..|.| +|+++.     +.+++++|+++|++++...      .+..|.||||.||..++. .++.         |
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~---------L  298 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY---------L  298 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH---------H
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH---------H
Confidence            9999999999 577776     5789999999999887521      355899999999988772 1111         1


Q ss_pred             ccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcC
Q 007949          159 TSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET  202 (583)
Q Consensus       159 ~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~  202 (583)
                      +..+.       .|+...-.....+.|-++-...-..++-++..
T Consensus       299 l~~~~-------~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          299 VGEKG-------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             HHHSC-------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHhcC-------CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            11110       12222223345678877766666656655543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.56  E-value=1.7e-14  Score=142.18  Aligned_cols=171  Identities=19%  Similarity=0.149  Sum_probs=131.8

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |++++.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  125 (285)
T 1wdy_A           54 IVELLLRHGADPVLRKKNGATP--------FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY  125 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCcccCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH
Confidence            4444554 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCcc----------CCCCch-HHHHHh--hHHHHHHHHhC-CCCCCCCCCcccCCccchhccccccccchhhhhh
Q 007949           87 ESGAICSEH----------TFDGDR-CHYAAL--NLKVRKLLKAY-EARPPPLGPLQAALRDTFLGCGANRQFLEEAEVV  152 (583)
Q Consensus        87 ~~ga~~~~~----------~~~g~t-~~~aa~--~~~i~~~L~~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~  152 (583)
                      ++|++++..          +..|.| +|+++.  +.+++++|++. |.+++.  .+..|.||||.|+..++..--     
T Consensus       126 ~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~-----  198 (285)
T 1wdy_A          126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDV-----  198 (285)
T ss_dssp             HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSCTTTH-----
T ss_pred             HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc--cCCCCCCHHHHHHHccccchH-----
Confidence            999999987          677888 577777  89999999987 888777  688999999999987762100     


Q ss_pred             hcccc-cccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhc
Q 007949          153 LGISG-VTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE  201 (583)
Q Consensus       153 ~~~~~-l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~  201 (583)
                      ..+.. +...+        .|+...-.....+.|.++-......++.++.
T Consensus       199 ~~i~~~Ll~~g--------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          199 EAITHLLLDHG--------ADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHHTT--------CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC--------CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            01111 11111        1332222334567777776666666665554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.55  E-value=5.9e-15  Score=152.43  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCCCCCCCCCcHHHHHHHHcC---CHHHHHHHHHcCCCCCc--------cCCCChhHHHHHHHhCCHHHHHH
Q 007949           16 IDLDASDFSSSVPLKKVPNGDVFEASRAG---DVDRLRYILESGVNVNA--------RDQWDSVALYYACLAGHLDAARM   84 (583)
Q Consensus        16 ~din~~d~~g~tpl~~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~d~~g~t~L~~A~~~g~~~~v~~   84 (583)
                      ++++..|..|+||        ||+|+..|   +.+++++|+++|++++.        .|..|+||||+|+..|+.+++++
T Consensus       226 ~~~~~~d~~g~t~--------L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  297 (373)
T 2fo1_E          226 GDIEELDRNGMTA--------LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY  297 (373)
T ss_dssp             HTTSCCCTTSCCH--------HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred             cChhhcCCCCCCH--------HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence            5777777777777        89999998   89999999999999886        67799999999999999999999


Q ss_pred             HHhcC-CCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           85 LLESG-AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        85 Ll~~g-a~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+++| ++++..|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+..++
T Consensus       298 Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~--~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNH  358 (373)
T ss_dssp             HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--CCSSSCCHHHHHHHTTC
T ss_pred             HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC--CCCCCCCHHHHHHHcCC
Confidence            99876 999999999999 577777  89999999999999888  78899999999998887

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.54  E-value=2.6e-14  Score=127.87  Aligned_cols=103  Identities=21%  Similarity=0.264  Sum_probs=93.4

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        49 ~~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  120 (156)
T 1bd8_A           49 AIALELLKQGASPNVQDTSGTSP--------VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL  120 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCH--------HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHH
Confidence            34444555 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhC
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAY  118 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~  118 (583)
                      +++ ++++..|..|.|| |+|+.  +.+++++|+++
T Consensus       121 l~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          121 AAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Hhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999 9999999999995 66666  89999999864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.54  E-value=2.1e-14  Score=145.93  Aligned_cols=163  Identities=18%  Similarity=0.139  Sum_probs=123.6

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCcc----------CCCChhHHHHHHHhCCHHHHHH
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR----------DQWDSVALYYACLAGHLDAARM   84 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~L~~A~~~g~~~~v~~   84 (583)
                      +.++|..|..|+||        +|+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++
T Consensus       115 ~~~~~~~d~~g~t~--------l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~  186 (337)
T 4g8k_A          115 GADVNECDFYGFTA--------FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  186 (337)
T ss_dssp             TCCTTCBCTTCCBH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred             cchhhhhccCCCCH--------HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHH
Confidence            67788888888888        89999999999999999999988754          4468999999999999999999


Q ss_pred             HHh-cCCCcCccCCCCch-HHHHHh------hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhccc
Q 007949           85 LLE-SGAICSEHTFDGDR-CHYAAL------NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGIS  156 (583)
Q Consensus        85 Ll~-~ga~~~~~~~~g~t-~~~aa~------~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~  156 (583)
                      |++ .|++++..+..|.+ +|+++.      ...++++|+++|++++.  ++..|.||||.||..++...-        .
T Consensus       187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~--~d~~g~t~L~~a~~~~~~~~v--------~  256 (337)
T 4g8k_A          187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RGERGKTPLILAVEKKHLGLV--------Q  256 (337)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--CCGGGCCHHHHHHHTTCHHHH--------H
T ss_pred             HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhhhhHHH--------H
Confidence            995 59999999999998 566555      35689999999999888  788999999999987762111        1


Q ss_pred             ccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcC
Q 007949          157 GVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET  202 (583)
Q Consensus       157 ~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~  202 (583)
                      .|+...       ..|+...-.....+.|-++-..+....+-++..
T Consensus       257 ~Ll~~~-------~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          257 RLLEQE-------HIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHHTST-------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHhc-------CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            121111       113333333445678877766555555555543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=138.46  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=54.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh---hHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL---NLKVR  112 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~---~~~i~  112 (583)
                      ||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.| +|+++.   ..+++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence            45555555555555555555555555555555555555555555555555555555555555554 344442   23445


Q ss_pred             HHHHhCCCCCCCCCCcc-cCCccchhcccccc
Q 007949          113 KLLKAYEARPPPLGPLQ-AALRDTFLGCGANR  143 (583)
Q Consensus       113 ~~L~~~~~~~~~~~~~~-~~~t~L~~A~~~~~  143 (583)
                      ++|+..|++++.  .+. .|.||||.||..++
T Consensus       160 ~~L~~~~~~~~~--~~~~~g~t~L~~A~~~~~  189 (240)
T 3eu9_A          160 RLLLTFNVSVNL--GDKYHKNTALHWAVLAGN  189 (240)
T ss_dssp             HHHHHTTCCTTC--CCTTTCCCHHHHHHHHTC
T ss_pred             HHHHhcCCCcch--hhccCCCcHHHHHHHcCC
Confidence            555555554444  222 44555555554444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.54  E-value=1.9e-14  Score=142.14  Aligned_cols=96  Identities=18%  Similarity=0.253  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ++..|..|+||        ||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       162 l~~~~~~g~t~--------Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  233 (278)
T 1dcq_A          162 LANGHEPDETA--------LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI  233 (278)
T ss_dssp             CSSCSSTTCBH--------HHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccCCCCc--------chHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            55668899999        8999999   899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCC
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~  121 (583)
                      +|..|.| +|+|+.  +.+++++|+++|+.
T Consensus       234 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          234 ANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999 577766  89999999998874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.52  E-value=1.1e-14  Score=127.36  Aligned_cols=104  Identities=22%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...+. |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        25 ~~~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   96 (137)
T 3c5r_A           25 SVEYLLQNGSDPNVKDHAGWTP--------LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL   96 (137)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444444 88999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCchHHHHHh---hHHHHHHHHhCC
Q 007949           87 ESGAICSEHTFDGDRCHYAAL---NLKVRKLLKAYE  119 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t~~~aa~---~~~i~~~L~~~~  119 (583)
                      ++|++++..|..|.||...|.   ..+++.+|.+.+
T Consensus        97 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           97 SYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999644444   455555554433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.51  E-value=3.4e-14  Score=145.53  Aligned_cols=108  Identities=20%  Similarity=0.161  Sum_probs=101.2

Q ss_pred             cHHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--
Q 007949           34 NGDVFEASRA-GDVDRLRYILESGVNVNARD--QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--  107 (583)
Q Consensus        34 ~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--  107 (583)
                      .++||.|+.. |+.++++.|++.|+++|..+  ..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+.  
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  279 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG  279 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4569999999 99999999999999999998  89999999999999999999999999999999999999 577777  


Q ss_pred             hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          108 NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       108 ~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.+++++|+++|++++.  .+..|.||||+|+..++
T Consensus       280 ~~~~v~~LL~~Gad~~~--~d~~G~TpL~~A~~~g~  313 (368)
T 3jue_A          280 HTGLACLFLKRGADLGA--RDSEGRDPLTIAMETAN  313 (368)
T ss_dssp             CHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHHCcCCCCC--cCCCCCCHHHHHHHCCC
Confidence            89999999999999888  78899999999998777

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.51  E-value=2.2e-14  Score=136.60  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=89.5

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++...++ |+++|.+|..|+||        ||+||..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|
T Consensus        88 ~v~~Ll~~g~~~~~~~~~g~t~--------L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~L  159 (222)
T 3ehr_A           88 WLRECLDNRVGVNGLDKAGSTA--------LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL  159 (222)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhCCCCccccCCCCCCH--------HHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4455555 89999999999999        8999999999999999998 999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCC
Q 007949           86 LESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPP  124 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~  124 (583)
                      +++|++++..|..|.|| |+|+.  +.++++.|+..++....
T Consensus       160 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            99999999999999995 55555  78888888888887655

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.50  E-value=7.9e-14  Score=128.57  Aligned_cols=112  Identities=21%  Similarity=0.175  Sum_probs=94.9

Q ss_pred             cchhhhcccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++|+++|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+.+++++|
T Consensus        58 ~~v~~Ll~~~~~~~~d~~g~t~--------L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  129 (183)
T 3deo_A           58 QALSQLLEDRDVDAVDENGRTA--------LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL  129 (183)
T ss_dssp             HHHHHHTTTSCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHH
Confidence            3455566689999999999999        899999999999999999999999998 8999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHhhHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDRC-HYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++.+|..|.|| |+|+....                 ...+.++|+.|+..++
T Consensus       130 l~~ga~~~~~d~~g~tpl~~A~~~~~-----------------~~~~~~~l~~a~~~~~  171 (183)
T 3deo_A          130 VELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGL  171 (183)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHHHH-----------------TCCCCSHHHHHHHHHH
T ss_pred             HHcCCCCcCCCCCCCCHHHHHHHhcc-----------------CcccccHHHHHHHcCH
Confidence            99999999999999995 55543111                 1225677777776555

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.49  E-value=6e-14  Score=150.49  Aligned_cols=107  Identities=18%  Similarity=0.162  Sum_probs=100.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCChhHHHHHHH---hCCHHHHHHHHhcCCCcCccCCCCch-HHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNAR------DQWDSVALYYACL---AGHLDAARMLLESGAICSEHTFDGDR-CHY  104 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~L~~A~~---~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~  104 (583)
                      +.||.|+..|+.+.++.|++.|+++|.+      |..|+||||+|+.   .|+.+++++|+++|++++.+|..|.| +|+
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~  213 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  213 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            5699999999999999999999999987      8899999999977   89999999999999999999999999 577


Q ss_pred             HHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       105 aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       214 A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~~~~~  252 (497)
T 3lvq_E          214 AALYNQPDCLKLLLKGRALVGT--VNEAGETALDIARKKHH  252 (497)
T ss_dssp             HTTTTCHHHHHHHHHTCCCCSC--CCTTCCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCC
Confidence            777  89999999999999888  78899999999998877

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.49  E-value=6.2e-14  Score=143.56  Aligned_cols=125  Identities=21%  Similarity=0.221  Sum_probs=97.4

Q ss_pred             cchhhhcc-cCCCCCCC--CCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHH
Q 007949            7 STIDAELD-EIDLDASD--FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAAR   83 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d--~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~   83 (583)
                      .++...+. |+++|..+  ..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++++
T Consensus       214 ~~v~~LL~~Gadvn~~~~~~~g~Tp--------Lh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~  285 (368)
T 3jue_A          214 PTMADALAHGADVNWVNGGQDNATP--------LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC  285 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCCCCccccccCCCCH--------HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            55666665 89999998  899999        89999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCC-CCcccCCccchhcc
Q 007949           84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPL-GPLQAALRDTFLGC  139 (583)
Q Consensus        84 ~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~-~~~~~~~t~L~~A~  139 (583)
                      +|+++|++++..|..|.| +|+|+.  +.+++++|+..+...... .....+.|+++++.
T Consensus       286 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             HHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            999999999999999999 566666  899999999877543221 13455677777655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.49  E-value=2e-14  Score=133.03  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC------HHHHHHHHHcCCCCCccCCCCh-hHHHHHHHh---
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGD------VDRLRYILESGVNVNARDQWDS-VALYYACLA---   76 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~------~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~---   76 (583)
                      ++...++ |+|+|.+|..|+||        ||+|+..|+      .+++++|+++|+++|.+|..|+ ||||+|+..   
T Consensus        57 iv~~Ll~~Gadvn~~d~~g~Tp--------Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           57 ISMFLINKGADIKSRTKEGTTL--------FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCT--------HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             HHHHHHHCCCCCCCCCCCCCcH--------HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCC
Confidence            4555666 99999999999999        899999987      6889999999999999999999 999999984   


Q ss_pred             --CCHHHHHHHHh-cCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           77 --GHLDAARMLLE-SGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        77 --g~~~~v~~Ll~-~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                        ++.+++++|++ +|++++.+|..|.|| |+|+.  +.+++++|..+...
T Consensus       129 ~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence              44679999999 999999999999995 66666  88899999876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.48  E-value=1.4e-13  Score=135.98  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCChhHHHHHHHh---CCHHHHHHHHhcCCCcCccCCCCch-HHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNV------NARDQWDSVALYYACLA---GHLDAARMLLESGAICSEHTFDGDR-CHY  104 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~  104 (583)
                      .+|+.|+..|+.+.+..++..|+++      +..|..|+||||+|+..   |+.+++++|+++|++++.+|..|.| +|+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            4589999999999999999999984      44588999999999999   8999999999999999999999999 588


Q ss_pred             HHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       105 aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      |+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~--~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEI--ANESGETPLDIAKRLKH  250 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC--ccCCCCCHHHHHHHcCC
Confidence            877  89999999999999888  78999999999998887

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.48  E-value=7.4e-14  Score=117.25  Aligned_cols=90  Identities=28%  Similarity=0.379  Sum_probs=79.0

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCC
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF   97 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~   97 (583)
                      ++..|.+|+||        ||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus        17 ~~~~~~~g~t~--------L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   88 (110)
T 2zgd_A           17 GSHMGSDLGKK--------LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK   88 (110)
T ss_dssp             -----CCHHHH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccCCccchH--------HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            44456778888        8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCch-HHHHHh--hHHHHHHH
Q 007949           98 DGDR-CHYAAL--NLKVRKLL  115 (583)
Q Consensus        98 ~g~t-~~~aa~--~~~i~~~L  115 (583)
                      .|.| +|+|+.  +.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            9999 577666  78888876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.48  E-value=1.5e-13  Score=133.01  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=97.8

Q ss_pred             cchhhhcccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...+.|+++|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+.+++++|
T Consensus        59 ~~v~~Ll~~~~~~~~d~~g~t~--------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  130 (244)
T 3ui2_A           59 QALSQLLEDRDVDAVDENGRTA--------LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL  130 (244)
T ss_dssp             HHHHHTTTTCCTTCBCTTSCBH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCH--------HHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4556666789999999999999        899999999999999999999999998 8899999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH-HHHHhhHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDRC-HYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~-~~aa~~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++|++++..|..|.|| |+++..       .          ....+.|||++|+..++
T Consensus       131 l~~ga~~~~~d~~g~t~l~~A~~~-------~----------~~~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          131 VELGADIEVEDERGLTALELAREI-------L----------KTTPKGNPMQFGRRIGL  172 (244)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHH-------H----------TTCCCSSHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCcHHHHHHHH-------H----------hccCCCCHHHHHHHcCh
Confidence            99999999999999995 655421       1          12347899999998777

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=138.09  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCChhHHHHHHHh---CCHHHHHHHHhcCCCcCccCCCCch-HH
Q 007949           34 NGDVFEASRAGDVDRLRYILESGVNVNA------RDQWDSVALYYACLA---GHLDAARMLLESGAICSEHTFDGDR-CH  103 (583)
Q Consensus        34 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t-~~  103 (583)
                      .++|+.|+..|+.+.++.|+..|++++.      .+..|+||||+|+..   |+.+++++|+++|++++..|..|.| +|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            4559999999999999999999999998      689999999999997   8999999999999999999999999 57


Q ss_pred             HHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          104 YAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       104 ~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~--~d~~G~TpL~~A~~~~~  271 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGT--VNEAGETALDIARKKHH  271 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSC--CCTTSCCHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCC
Confidence            7777  89999999999999888  78999999999998777

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.46  E-value=2.6e-13  Score=137.82  Aligned_cols=128  Identities=17%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             chhhhcc-cCCCCCCCCC-CCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFS-SSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~-g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      ++...++ |+|+|.++.. |+||        ||+|+..|+.+++++|+++|++++.++..+.++++.++..++..++..+
T Consensus        40 ~V~~LL~~Gadvn~~~~~~g~Tp--------Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (337)
T 4g8k_A           40 LVQQLLEGGANVNFQEEEGGWTP--------LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF  111 (337)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHCCCCCCccCCCCCcCH--------HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence            3344444 6666666543 6666        5666666666666666666666666666666666666666666666666


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCC--------CcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLG--------PLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~--------~~~~~~t~L~~A~~~~~  143 (583)
                      +..+++++..+..|.| +|+++.  +.+++++|+++|++++...        .+..|.||||.||..++
T Consensus       112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence            6666677777888888 466666  7888899999888776532        23357899999998776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.41  E-value=4.4e-13  Score=108.65  Aligned_cols=76  Identities=33%  Similarity=0.573  Sum_probs=70.7

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +++..++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        17 ~v~~Ll~~g~~~n~~d~~g~t~--------L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll   88 (93)
T 1n0q_A           17 VVKLLLEAGADVNAKDKNGRTP--------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (93)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCcccCCCCCCH--------HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4445554 89999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC
Q 007949           87 ESGAI   91 (583)
Q Consensus        87 ~~ga~   91 (583)
                      ++|++
T Consensus        89 ~~ga~   93 (93)
T 1n0q_A           89 EAGAY   93 (93)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            99985

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.37  E-value=3.6e-13  Score=113.77  Aligned_cols=88  Identities=20%  Similarity=0.336  Sum_probs=80.1

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...+. |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        23 ~~~~~Ll~~g~~~~~~d~~g~t~--------L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~L   94 (115)
T 2l6b_A           23 EEVKKLLSKGADVNARSKDGNTP--------LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL   94 (115)
T ss_dssp             HHHHHHTTTTCCSSCCCSSSCCT--------THHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCH--------HHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            34455555 88999999999999        7999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchH
Q 007949           86 LESGAICSEHTFDGDRC  102 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~  102 (583)
                      +++|++++..+..|.+|
T Consensus        95 l~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           95 DAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTSSSHHHHSCCCC--
T ss_pred             HHcCCCCCcCCcccccc
Confidence            99999999999999874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.31  E-value=6.6e-13  Score=134.37  Aligned_cols=128  Identities=12%  Similarity=-0.062  Sum_probs=98.7

Q ss_pred             hhcc-cCCCCCCCCCCCCCCCC--------------CCcHHH-----------------------HHHHHcCCHHHHHHH
Q 007949           11 AELD-EIDLDASDFSSSVPLKK--------------VPNGDV-----------------------FEASRAGDVDRLRYI   52 (583)
Q Consensus        11 ~~~~-~~din~~d~~g~tpl~~--------------~~~~~L-----------------------~~A~~~g~~~~v~~L   52 (583)
                      ..++ |++++.+|..|.|+++.              .....+                       |.|+..+..++++.|
T Consensus        37 ~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  116 (327)
T 1sw6_A           37 DFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF  116 (327)
T ss_dssp             STTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred             HHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence            3444 88899999889888641              111112                       445555556777788


Q ss_pred             HHcCCCCCc-cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--h---HHHHHHHHhCC-CCCCC
Q 007949           53 LESGVNVNA-RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--N---LKVRKLLKAYE-ARPPP  124 (583)
Q Consensus        53 l~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~---~~i~~~L~~~~-~~~~~  124 (583)
                      ++.|+++|. .|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +|+|+.  +   .+++..|++.+ .+++.
T Consensus       117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~  196 (327)
T 1sw6_A          117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  196 (327)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence            888899999 8999999999999999999999999999999999999999 577777  3   36677777666 45555


Q ss_pred             CCCcccCCccchhccc
Q 007949          125 LGPLQAALRDTFLGCG  140 (583)
Q Consensus       125 ~~~~~~~~t~L~~A~~  140 (583)
                        ++..|.||||+||.
T Consensus       197 --~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          197 --EDSMNRTILHHIII  210 (327)
T ss_dssp             --ECTTCCCHHHHHHH
T ss_pred             --CCCCCCCHHHHHHH
Confidence              68899999999997

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.21  E-value=6e-13  Score=136.76  Aligned_cols=106  Identities=16%  Similarity=0.020  Sum_probs=65.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC---CccCCCChhHHHHHHHhCCHHHHHHHHhcCCCc---CccCCCCch-HHHHHh--
Q 007949           37 VFEASRAGDVDRLRYILESGVNV---NARDQWDSVALYYACLAGHLDAARMLLESGAIC---SEHTFDGDR-CHYAAL--  107 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t-~~~aa~--  107 (583)
                      ||+|+..|+.+++++|++.|+..   +..+..|.||||+|+..|+.+++++|+++|+++   +..+.+ .| +|+||.  
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G  174 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG  174 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence            67777777777777777776622   233445677777777777777777777777652   222222 55 466666  


Q ss_pred             hHHHHHHHHhCCCCCCCCCCcccCCccchhcc-cccc
Q 007949          108 NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC-GANR  143 (583)
Q Consensus       108 ~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~-~~~~  143 (583)
                      +.+++++|+++|++++....+..|.||||.|+ .+|+
T Consensus       175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~  211 (376)
T 2aja_A          175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH  211 (376)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence            67777777777765432112455677777777 6666

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.19  E-value=2.9e-11  Score=101.20  Aligned_cols=83  Identities=23%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccc
Q 007949           59 VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDT  135 (583)
Q Consensus        59 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L  135 (583)
                      ....|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA--QDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cccCCCcHH
Confidence            4456789999999999999999999999999999999999998 577777  89999999999999887  788999999


Q ss_pred             hhcccccc
Q 007949          136 FLGCGANR  143 (583)
Q Consensus       136 ~~A~~~~~  143 (583)
                      |+|+..++
T Consensus        95 ~~A~~~~~  102 (110)
T 2zgd_A           95 DISIDNGN  102 (110)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99998776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.19  E-value=8.6e-13  Score=135.57  Aligned_cols=100  Identities=15%  Similarity=0.033  Sum_probs=86.4

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc--cCCCCch-HHHHH-
Q 007949           34 NGDVFEASRAGDVDRLRYILESGVNV---NARDQWDSVALYYACLAGHLDAARMLLESGAICSE--HTFDGDR-CHYAA-  106 (583)
Q Consensus        34 ~~~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~t-~~~aa-  106 (583)
                      .++||+||..|+.+++++|+++|+++   +..+.. +||||+|+..|+.+++++|+++|++++.  .+..|.| +|+|+ 
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence            34599999999999999999999752   222222 9999999999999999999999999887  8888888 69999 


Q ss_pred             h--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          107 L--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       107 ~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .  +.+++++|++.|.         .|.|||+.|+..++
T Consensus       208 ~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~  237 (376)
T 2aja_A          208 GRGHHNVINFLLDCPV---------MLAYAEIHEFEYGE  237 (376)
T ss_dssp             TTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTT
T ss_pred             HCCCHHHHHHHHhCCC---------ccchHHHHHHHCCC
Confidence            7  8999999998663         38899999999888

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.9e-11  Score=101.10  Aligned_cols=91  Identities=13%  Similarity=0.098  Sum_probs=72.0

Q ss_pred             CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhhHHHhhCchhHHHHHhcCCCCCCCccccccCCCCCCccccCCCccchHH
Q 007949          453 VSPAELCHWLILSDMYGVFKVREYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDD  532 (583)
Q Consensus       453 ~~~~n~~~~l~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ee~d~~e~~~~  532 (583)
                      ++++||+.++.+|+.|+++.|.+.|.+||.+||..+..+++|.+|+.+       .+..+.+++  +.+|    .+++ +
T Consensus         8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~-------~L~~lL~sd--v~~E----~~vf-~   73 (105)
T 2eqx_A            8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHR-------LLTDIISDG--VPCS----QNPT-E   73 (105)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHH-------HHHHHHHTC--EETT----SCHH-H
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHH-------HHHHHHcCC--CCCH----HHHH-H
Confidence            389999999999999999999999999999999999999999998776       333333344  5666    5666 9


Q ss_pred             HHHHHHHHHhhhhhcchhhHHhHHHHHH
Q 007949          533 LREKWLEAEAAELDKRDESALMFDKRLE  560 (583)
Q Consensus       533 ~~~~Wl~~~~~~~~~~~~~~~~~~~~~~  560 (583)
                      ++++|+++++..   |..+...+++.+|
T Consensus        74 av~~Wv~~d~~~---R~~~~~~Ll~~VR   98 (105)
T 2eqx_A           74 AIEAWINFNKEE---REAFAESLRTSLK   98 (105)
T ss_dssp             HHHHHHHTTHHH---HHHHHHHHHHHCC
T ss_pred             HHHHHHHcCHHH---HHHHHHHHHHHHH
Confidence            999999999764   4345555555443

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=98.95  E-value=2.1e-09  Score=87.18  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=64.5

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcC--CCCCCcccEEEcCCCCHHHHHHHhhhhc-----C---Cccc---CCh
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFET--DWRYRNEIRFSREKLSYPALYGLIHFFY-----S---DRLE---IAV  238 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~--~~~e~~~~~i~l~~v~~~~~~~lL~ylY-----t---g~~~---i~~  238 (583)
                      |+++. +|+.|++||.+ |+.|++|+.||.+  ++.|.....|++++|++.+++.+++|+|     +   +.++   ++.
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~   82 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   82 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence            55554 78999999999 9999999999987  5677778899999999999999999999     5   6676   899


Q ss_pred             hhHHHHHHHHhHhc
Q 007949          239 DDMEDLVKICKVCK  252 (583)
Q Consensus       239 ~~~~~ll~~a~~~~  252 (583)
                      +++.+++.+|..++
T Consensus        83 ~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           83 EIALELLMAANFLD   96 (97)
T ss_dssp             GGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhC
Confidence            99999999998764

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.92  E-value=3.6e-09  Score=92.16  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCC---------
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDG---------  414 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~---------  414 (583)
                      |++.. +|+.|.+|+.+ +..|.+|+.|+... +            ...|.+++|+..+++.+++|+|.+.         
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-~------------~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~   69 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-G------------MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDD   69 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT-C------------CSSEECTTCCHHHHHHHHHHHHHHTTCC------
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc-C------------CCceecCCcCHHHHHHHHHHHHHhccCCCccccc
Confidence            66666 78999999998 79999999999852 1            1369999999999999999999876         


Q ss_pred             -----------------CCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHH
Q 007949          415 -----------------LKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLI  463 (583)
Q Consensus       415 -----------------~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~  463 (583)
                                       + .++.+.+.+|+.+|++|++.+|.+.|++++...+..-+++..-.++.
T Consensus        70 ~~~~~~~~~i~~wD~~F~-~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~  134 (141)
T 1fs1_B           70 ENKEKRTDDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN  134 (141)
T ss_dssp             -----------HHHHHHT-CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             cccccchhhhhHHHHHHH-hCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence                             4 56778899999999999999999999999999987666665544443

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=98.92  E-value=2.6e-09  Score=86.70  Aligned_cols=82  Identities=24%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhc-----C---CCC
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY-----T---DGL  415 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY-----t---~~~  415 (583)
                      |++.. +|..|.+||.+ |..|+||++||.+.+++.|+       ....|.++++++.+++.+++|+|     +   +.+
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~-------~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i   75 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI   75 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC---------------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCcccc-------CCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCC
Confidence            44544 68999999999 99999999999874445554       34689999999999999999999     5   555


Q ss_pred             C--CCCHHhHHHHHHHHhccC
Q 007949          416 K--DIDPDQAEEMFDAASRYL  434 (583)
Q Consensus       416 ~--~i~~~~~~~ll~~A~~~~  434 (583)
                      +  +++.+++.+|+.+|++|+
T Consensus        76 ~~~~i~~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           76 PEFPIAPEIALELLMAANFLD   96 (97)
T ss_dssp             CCCCCCGGGHHHHHHHHHHHT
T ss_pred             CcCcCCHHHHHHHHHHHhhhC
Confidence            2  278899999999999986

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.77  E-value=1.6e-09  Score=96.60  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCC-------
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK-------  416 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~-------  416 (583)
                      |++.. +|..|.+|+.+ +..|.+|+.||...  .          ....|.+++|+..+++.+++|+|.+.-.       
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~--~----------~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~   72 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD--C----------VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEA   72 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC------------------------CCTTSCHHHHHHHHHC--------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc--C----------CCCceeCCcCcHHHHHHHHHHHHHcccCCCccccc
Confidence            55654 78999999998 78999999999862  1          1236899999999999999999998621       


Q ss_pred             -------------------CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHhcC
Q 007949          417 -------------------DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYG  469 (583)
Q Consensus       417 -------------------~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~~~  469 (583)
                                         .++.+.+.+|+.+|++|++.+|...|++++...+...|++.+-.++.++..+-
T Consensus        73 ~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t  144 (160)
T 2p1m_A           73 VEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT  144 (160)
T ss_dssp             ----------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred             ccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence                               46667899999999999999999999999999998788888888877766554

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.24  E-value=6.6e-06  Score=73.57  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             cEEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCC------
Q 007949          344 DVCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK------  416 (583)
Q Consensus       344 Dv~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~------  416 (583)
                      -|++.. +|..|.+++.+ +..|..++.|+...+.  +.   ..+.....|.+++|+..+++.|++|++...-.      
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~--~~---~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~   81 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGD--DD---DEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED   81 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC----------------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCc--cc---ccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc
Confidence            466655 68899999998 6889999999985211  00   00012257999999999999999999876521      


Q ss_pred             ------------------CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHHHHh
Q 007949          417 ------------------DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDM  467 (583)
Q Consensus       417 ------------------~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~A~~  467 (583)
                                        .++.+.+.+|+.+|++|++.+|...|+..+...+...+++.+-.++.+...
T Consensus        82 ~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd  150 (169)
T 3v7d_A           82 DDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND  150 (169)
T ss_dssp             ------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCC
T ss_pred             cccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC
Confidence                              245577888999999999999999999988888866677666555544433

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.19  E-value=3.3e-06  Score=73.31  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      |+++. +|+.|.+|+.+ +..|++++.||.+.-    ...|++++|+..+++.+++|+|+..
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~   60 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHK   60 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhc
Confidence            66776 78999999998 899999999997631    3469999999999999999999865

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.02  E-value=5.7e-06  Score=66.51  Aligned_cols=82  Identities=23%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCC---------
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDG---------  414 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~---------  414 (583)
                      |++.. +|..|.+++.+ |..|.+++.|+...+.+.|+       ....|.+++|+..+++.+++|+|...         
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~-------~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i   74 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI   74 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC---------------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc-------cCCceeCCCCCHHHHHHHHHHHHHccccCCCcccC
Confidence            45555 78999999997 79999999999863233343       23579999999999999999998764         


Q ss_pred             --CCCCCHHhHHHHHHHHhccCc
Q 007949          415 --LKDIDPDQAEEMFDAASRYLL  435 (583)
Q Consensus       415 --~~~i~~~~~~~ll~~A~~~~~  435 (583)
                        . .++.+.+.+|+.+|+++++
T Consensus        75 ~~w-~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           75 PEF-PIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCC-CCCTTTHHHHHHHHHHHTC
T ss_pred             CCc-ccCHHHHHHHHHHHHHhCc
Confidence              2 4667788999999988764

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=97.96  E-value=1.9e-05  Score=63.80  Aligned_cols=80  Identities=23%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             cEEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCC--------
Q 007949          344 DVCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDG--------  414 (583)
Q Consensus       344 Dv~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~--------  414 (583)
                      -|++.. +|..|.+++.+ |..|.+++.|+..  ++ |+       ....|.+++|+..+++.+++|+|...        
T Consensus         5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~--~~-e~-------~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~   73 (99)
T 1hv2_A            5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEG--PF-RE-------SKGRIELKQFDSHILEKAVEYLNYNLKYSGVSED   73 (99)
T ss_dssp             EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHS--ST-TT-------CTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEEEecCCCEEEECHHH-HHHhHHHHHHHhc--cc-cc-------CCCceecCCcCHHHHHHHHHHHHHhcccCCCccc
Confidence            366666 89999999997 7999999999986  33 32       22479999999999999999999764        


Q ss_pred             ------CCCCCHHhHHHHHHHHhccCc
Q 007949          415 ------LKDIDPDQAEEMFDAASRYLL  435 (583)
Q Consensus       415 ------~~~i~~~~~~~ll~~A~~~~~  435 (583)
                            . .++.+.+.+|+.+|++|++
T Consensus        74 ~~~i~~w-~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           74 DDEIPEF-EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             CSSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred             cccCCCc-cCCHHHHHHHHHHHHHhCc
Confidence                  2 4677888999999988764

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=97.91  E-value=2.6e-06  Score=75.71  Aligned_cols=114  Identities=11%  Similarity=0.067  Sum_probs=45.7

Q ss_pred             cEEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCCh-hhHH-----HH
Q 007949          172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAV-DDME-----DL  244 (583)
Q Consensus       172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~-~~~~-----~l  244 (583)
                      -|+++. +|+.|.+|+.+ +..|++|+.||.+..   ....|++++|+..+++.+++|+|+..-.-.+ +.-.     .-
T Consensus         5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~   80 (160)
T 2p1m_A            5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD   80 (160)
T ss_dssp             ---CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC----------------------
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccccccc
Confidence            356664 78999999998 889999999998642   2347899999999999999999997631100 0000     00


Q ss_pred             HHHHhHhchHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 007949          245 VKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGS  290 (583)
Q Consensus       245 l~~a~~~~~~~l~~~l~~~l~~~~~a~~~~~~~l~~~~~~~i~~~~  290 (583)
                      -.+ ..+.-+|+.--..+.+.+...|...+...|.+.|-++++...
T Consensus        81 ~~i-~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i  125 (160)
T 2p1m_A           81 DDL-KAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMI  125 (160)
T ss_dssp             ---------------------CHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             chh-hHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            000 011122232111244555666777777777777777776654

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=97.84  E-value=4.7e-05  Score=61.41  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             cEEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCc--------------ccC
Q 007949          172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR--------------LEI  236 (583)
Q Consensus       172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~--------------~~i  236 (583)
                      -|+++. +|..|.+++.+ +..|.+++.||.+++ +.....|++++|+..+++.+++|+|...              ..+
T Consensus         5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v   82 (99)
T 1hv2_A            5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI   82 (99)
T ss_dssp             EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred             EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence            466776 88999999997 899999999998755 4445689999999999999999999743              245


Q ss_pred             ChhhHHHHHHHHhHh
Q 007949          237 AVDDMEDLVKICKVC  251 (583)
Q Consensus       237 ~~~~~~~ll~~a~~~  251 (583)
                      +.+.+.+++.+|..+
T Consensus        83 d~~~lfeLi~AAnyL   97 (99)
T 1hv2_A           83 PTEMSLELLLAADYL   97 (99)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            666788888888655

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=97.73  E-value=5.3e-05  Score=60.78  Aligned_cols=78  Identities=12%  Similarity=0.093  Sum_probs=60.6

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCC--CCCCcccEEEcCCCCHHHHHHHhhhhcCCc-----------ccCCh
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETD--WRYRNEIRFSREKLSYPALYGLIHFFYSDR-----------LEIAV  238 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~--~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~-----------~~i~~  238 (583)
                      |+++. +|..|.+++.+ +..|.+++.||.+.  +.+.....|++++|+..+++.+++|+|...           ..++.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~   81 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   81 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence            55665 78999999997 89999999999852  245555689999999999999999999643           35677


Q ss_pred             hhHHHHHHHHhHh
Q 007949          239 DDMEDLVKICKVC  251 (583)
Q Consensus       239 ~~~~~ll~~a~~~  251 (583)
                      +.+.+++.+|..+
T Consensus        82 ~~l~eLi~AAnyL   94 (96)
T 2fnj_C           82 EIALELLMAANFL   94 (96)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            7889999888765

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.65  E-value=0.00022  Score=58.39  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             cEEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH-
Q 007949          344 DVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD-  421 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~-  421 (583)
                      -|++-|+|..|...+..|.... .+|.+||++...+.....     ....+-+ +-++..|+.+|.|+.+|.+ .++.+ 
T Consensus         7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d-----~~~~~fi-DRdp~~F~~IL~~lr~g~l-~~p~~~   79 (107)
T 3drz_A            7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKD-----ETGAYLI-DRDPTYFGPVLNYLRHGKL-VINKDL   79 (107)
T ss_dssp             EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBC-----TTSCEEE-CSCHHHHHHHHHHHHHSCC-CCCTTS
T ss_pred             EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCC-----CCceEEe-cCChHHHHHHHHHhCCCee-CCCCCC
Confidence            4788999999999999997764 588999986211211100     1123434 5789999999999999998 45443 


Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHh
Q 007949          422 QAEEMFDAASRYLLFPLKRAVADVLLL  448 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~~~c~~~l~~  448 (583)
                      ....++..|.+|++++|++.|.+.+.+
T Consensus        80 ~~~~l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           80 AEEGVLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            247899999999999999999987754

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.44  E-value=0.00018  Score=59.23  Aligned_cols=83  Identities=23%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             cEEEE-ECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCC--------
Q 007949          344 DVCVR-VDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDG--------  414 (583)
Q Consensus       344 Dv~~~-~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~--------  414 (583)
                      -|++. .+|..|.+.+.+ +..|..++.|+...+.+.|+       ....|.+++|+..+++.+++|++...        
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~-------~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~   89 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTE   89 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC---------------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccc-------cCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCC
Confidence            46666 378999999995 68999999999863333333       22479999999999999999998653        


Q ss_pred             ---CCCCCHHhHHHHHHHHhccCc
Q 007949          415 ---LKDIDPDQAEEMFDAASRYLL  435 (583)
Q Consensus       415 ---~~~i~~~~~~~ll~~A~~~~~  435 (583)
                         . .++.+.+.+|+.+|++|.+
T Consensus        90 i~~w-~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           90 IPEF-PIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             CCCC-CCCHHHHHHHHHHHHHHTC
T ss_pred             CCCc-ccCHHHHHHHHHHHHHhCc
Confidence               2 4677889999999998864

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.44  E-value=0.00079  Score=55.10  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cEEEEECCEeEehhHHHHhhcc-HHHHHhhcCCCC----CCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhh-HHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDWR----YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDD-MEDLV  245 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~~~~~~~~----e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~-~~~ll  245 (583)
                      -|++.|||..|...+..|.... .+|..||.+.+.    ......+-+ +-+|..|..+|+|+.+|.+.++.+. ...++
T Consensus         7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~   85 (107)
T 3drz_A            7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL   85 (107)
T ss_dssp             EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred             EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence            5678899999999999998765 478899876521    112234444 6899999999999999999876653 46777


Q ss_pred             HHHhHhchHHHHHHHHH
Q 007949          246 KICKVCKCESLQRIIEK  262 (583)
Q Consensus       246 ~~a~~~~~~~l~~~l~~  262 (583)
                      .-|+.++++.|.+.|..
T Consensus        86 ~Ea~fy~l~~L~~~l~~  102 (107)
T 3drz_A           86 EEAEFYNITSLIKLVKD  102 (107)
T ss_dssp             HHHHHHTCHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            77888888777777764

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.12  E-value=0.0025  Score=56.77  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=47.1

Q ss_pred             cEEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCC----CCcccEEEcCCCCHHHHHHHhhhhcCCc
Q 007949          172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWR----YRNEIRFSREKLSYPALYGLIHFFYSDR  233 (583)
Q Consensus       172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~----e~~~~~i~l~~v~~~~~~~lL~ylYtg~  233 (583)
                      -|+++. +|..|.+++.+ +..|..++.|+.....    +.....|++++|+..+++.+++|+|...
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~   73 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHR   73 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcc
Confidence            566665 78999999998 7789999999975322    1223679999999999999999999743

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.01  E-value=0.0013  Score=54.04  Aligned_cols=79  Identities=11%  Similarity=0.080  Sum_probs=59.8

Q ss_pred             cEEEEE-CCEeEehhHHHHhhccHHHHHhhcCC--CCCCcccEEEcCCCCHHHHHHHhhhhcCCc-----------ccCC
Q 007949          172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETD--WRYRNEIRFSREKLSYPALYGLIHFFYSDR-----------LEIA  237 (583)
Q Consensus       172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~--~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~-----------~~i~  237 (583)
                      -|+++. +|..|.+++.+ +..|..++.|+.+.  +.+.....|++++|+..+++.+++|+|...           ..++
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd   96 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   96 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence            466663 78999999994 78999999999852  334445689999999999999999998632           3567


Q ss_pred             hhhHHHHHHHHhHh
Q 007949          238 VDDMEDLVKICKVC  251 (583)
Q Consensus       238 ~~~~~~ll~~a~~~  251 (583)
                      ...+.+|+.+|..+
T Consensus        97 ~~~lfeLi~AAnyL  110 (112)
T 1vcb_B           97 PEIALELLMAANFL  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            77888888888765

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.50  E-value=0.00031  Score=57.43  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCccCchhHHHHHHHHHhhhcccCCCccccchhhHHHHHHHhcccccCCC
Q 007949          262 KELIHQKYAEYKALRDVDNSQKRFILQGSALPEEDRLPAALSRILQISLARSNMDHNIDNGICKLSSSVEAMHISDHVDD  341 (583)
Q Consensus       262 ~~l~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~l~~~~~  341 (583)
                      ||+.++.+|..++++.|.+.|.+|+.+||.               ++    ...++|..+|.+.+..+|++         
T Consensus        12 NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~---------------~v----~~~~eFl~L~~~~L~~lL~s---------   63 (105)
T 2eqx_A           12 NCLQVMWLADRHSDPELYTAAKHCAKTHLA---------------QL----QNTEEFLHLPHRLLTDIISD---------   63 (105)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHTCH---------------HH----HTSHHHHHSCHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------HH----HhcccHhhCCHHHHHHHHcC---------
Confidence            899999999999999999999999999985               12    14678999999999999987         


Q ss_pred             CCcEEEEECCEEEEeeeeeee----ccCHHHHHHHcCc
Q 007949          342 LADVCVRVDKKIFRCHQVVLA----SRSEYFKARLSRM  375 (583)
Q Consensus       342 ~~Dv~~~~~~~~~~ahr~iL~----~~S~~F~~~~~~~  375 (583)
                        |  +..+...|.|...|+.    .|..++..++..+
T Consensus        64 --d--v~~E~~vf~av~~Wv~~d~~~R~~~~~~Ll~~V   97 (105)
T 2eqx_A           64 --G--VPCSQNPTEAIEAWINFNKEEREAFAESLRTSL   97 (105)
T ss_dssp             --C--EETTSCHHHHHHHHHHTTHHHHHHHHHHHHHHC
T ss_pred             --C--CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence              6  5556777888877763    4667888888753

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=96.00  E-value=0.013  Score=52.96  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             cEEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHHh
Q 007949          344 DVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ  422 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~~  422 (583)
                      =|.+-|+|..|...+..|.... .+|.+||.+...+.....     ....+-+ +=++..|+.+|.|+.+|.+ .++.+.
T Consensus        13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~D-----e~geyFI-DRDP~~F~~ILnyLRtG~L-~lP~~~   85 (202)
T 3drx_A           13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKD-----ETGAYLI-DRDPTYFGPVLNYLRHGKL-VINKDL   85 (202)
T ss_dssp             EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BC-----TTCCEEE-CSCSTTHHHHHHHHHHSCC-CCCTTS
T ss_pred             EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccC-----CCccEEe-cCChHHHHHHHHHhcCCcc-CCCCCC
Confidence            3778899999999999997653 488899875211211000     1123333 4588999999999999998 554432


Q ss_pred             -HHHHHHHHhccCchHHHHHHHHHHHhh
Q 007949          423 -AEEMFDAASRYLLFPLKRAVADVLLLH  449 (583)
Q Consensus       423 -~~~ll~~A~~~~~~~l~~~c~~~l~~~  449 (583)
                       ...++..|.+|++++|.+.|.+.+.+.
T Consensus        86 ~~~~l~eEA~FygL~~Lv~~l~~~i~er  113 (202)
T 3drx_A           86 AEEGVLEEAEFYNITSLIKLVKDKIRER  113 (202)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence             367899999999999999999888654

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=94.85  E-value=0.044  Score=49.54  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             cEEEEECCEeEehhHHHHhhcc-HHHHHhhcCCCC--C--CcccEEEcCCCCHHHHHHHhhhhcCCcccCChhh-HHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDWR--Y--RNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDD-MEDLV  245 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~~~~~~~~--e--~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~-~~~ll  245 (583)
                      =|++.|||..|...+..|.... .+|..||.+.+.  .  .....+-+ +-+|..|..||+|+-+|.+.++.+. ...++
T Consensus        13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~   91 (202)
T 3drx_A           13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL   91 (202)
T ss_dssp             EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred             EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHH
Confidence            4567899999999999997654 378888876421  1  12234444 5789999999999999999876653 35677


Q ss_pred             HHHhHhchHHHHHHHHHHH
Q 007949          246 KICKVCKCESLQRIIEKEL  264 (583)
Q Consensus       246 ~~a~~~~~~~l~~~l~~~l  264 (583)
                      .-|+.+++..|.+.|...+
T Consensus        92 eEA~FygL~~Lv~~l~~~i  110 (202)
T 3drx_A           92 EEAEFYNITSLIKLVKDKI  110 (202)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCcHHHHHHHHHHH
Confidence            7777777777777766443

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=90.38  E-value=0.22  Score=40.89  Aligned_cols=81  Identities=14%  Similarity=0.024  Sum_probs=55.0

Q ss_pred             cEEEEECCEeEehhHHHHhhcc-HHHHHhhcCCC-CCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDW-RYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVKIC  248 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~~~~~~~-~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~~a  248 (583)
                      =|++.|||..|...+..|.... ..|..|+.+.. .......+-+ +=+|..|..||+|+-+|.+.++.+ ....++.-|
T Consensus         6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea   84 (115)
T 3kvt_A            6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   84 (115)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence            4678899999999999997653 24556665421 1122344544 578999999999999999977764 344555555


Q ss_pred             hHhch
Q 007949          249 KVCKC  253 (583)
Q Consensus       249 ~~~~~  253 (583)
                      +.+++
T Consensus        85 ~fy~i   89 (115)
T 3kvt_A           85 EFWGL   89 (115)
T ss_dssp             HHHTC
T ss_pred             HHhCC
Confidence            55543

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=89.10  E-value=0.25  Score=41.13  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             cEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH-h
Q 007949          344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD-Q  422 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~-~  422 (583)
                      -|.+-|+|..|..-+..|.....   .++...+.+.-.     ......+-+ +=++..|+.+|.|+.+|.+ .++.+ .
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~-----~~~~g~~Fi-DRdp~~F~~ILnflR~G~l-~~p~~~~   83 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFF-----NEDTKEYFF-DRDPEVFRCVLNFYRTGKL-HYPRYEC   83 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTB-----CSSSCSEEE-CSCHHHHHHHHHHHHHSCB-CCCTTSC
T ss_pred             EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccc-----cCCCCcEEE-cCChHHHHHHHHHHhcCCC-CCCCCcC
Confidence            47888999999999988854321   223221111000     011223434 3489999999999999998 45443 4


Q ss_pred             HHHHHHHHhccCchHHH-HHHH
Q 007949          423 AEEMFDAASRYLLFPLK-RAVA  443 (583)
Q Consensus       423 ~~~ll~~A~~~~~~~l~-~~c~  443 (583)
                      +..++..|++|+++.+. ..|+
T Consensus        84 ~~~l~~Ea~fy~i~~l~l~~cC  105 (124)
T 1s1g_A           84 ISAYDDELAFYGILPEIIGDCC  105 (124)
T ss_dssp             HHHHHHHHHHTTCCGGGBCHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHH
Confidence            68899999999998873 4443

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=87.11  E-value=0.58  Score=38.85  Aligned_cols=81  Identities=10%  Similarity=0.084  Sum_probs=54.9

Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhcCC----CCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETD----WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVK  246 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~----~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~  246 (583)
                      -|++.|||..|..-+..|.....   .+|...    ........+-+ +=+|..|..||+|+-+|.+.++.+ .+..++.
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~   89 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD   89 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred             EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence            56788999999999999965422   223221    01112234444 469999999999999999987665 3566777


Q ss_pred             HHhHhchHHH
Q 007949          247 ICKVCKCESL  256 (583)
Q Consensus       247 ~a~~~~~~~l  256 (583)
                      -|+.+++..+
T Consensus        90 Ea~fy~i~~l   99 (124)
T 1s1g_A           90 ELAFYGILPE   99 (124)
T ss_dssp             HHHHTTCCGG
T ss_pred             HHHHcCCChH
Confidence            7777766544

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=85.90  E-value=0.82  Score=38.81  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhcCC----CCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHH
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETD----WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVK  246 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~----~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~  246 (583)
                      -|++.|||..|...+..|.....   .||...    ........+-+ +=++..|..||+|+-+|.+.++.+ .+..+++
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e  111 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD  111 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred             EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence            56788999999999999975422   233221    01112344555 569999999999999999877655 3556666


Q ss_pred             HHhHhchHH
Q 007949          247 ICKVCKCES  255 (583)
Q Consensus       247 ~a~~~~~~~  255 (583)
                      -|+.+++..
T Consensus       112 Ea~fy~i~~  120 (140)
T 2nz0_B          112 ELAFYGILP  120 (140)
T ss_dssp             HHHHHTCCG
T ss_pred             HHHHcCCCh
Confidence            666665444

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=84.86  E-value=0.53  Score=37.44  Aligned_cols=85  Identities=12%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             EEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcC-CCCCCCCH-H
Q 007949          345 VCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT-DGLKDIDP-D  421 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt-~~~~~i~~-~  421 (583)
                      |++-|+|..|...+..|.... ..+.+|++....+..        ....+-+ +=++..|+.+|.|+.+ |.+ .++. -
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~--------~~~eyFi-DRdp~~F~~ILnflR~~G~l-~~p~~~   72 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDP--------LRNEYFF-DRNRPSFDAILYFYQSGGRL-RRPVNV   72 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEET--------TTTEEEE-CSCSTTHHHHHHHHHTTSCC-CCCTTS
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCC--------CceeEEE-cCChHHHHHHHHHHhcCCcc-cCCCCC
Confidence            678899999999988885432 233334432111111        1123444 4578999999999998 887 4443 3


Q ss_pred             hHHHHHHHHhccCchHHH
Q 007949          422 QAEEMFDAASRYLLFPLK  439 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~  439 (583)
                      .+..++..|.+|+++++.
T Consensus        73 ~~~~~~~Ea~fy~i~~~~   90 (100)
T 1t1d_A           73 PLDVFSEEIKFYELGENA   90 (100)
T ss_dssp             CHHHHHHHHHHTTCCHHH
T ss_pred             CHHHHHHHHHHcCCCHHH
Confidence            467899999999997744

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=84.43  E-value=0.32  Score=39.84  Aligned_cols=86  Identities=14%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             cEEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH-
Q 007949          344 DVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD-  421 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~-  421 (583)
                      -|++-|+|..|...+..|.... ..+.+|++....+..        ....+-+ +=++..|+.+|.|+.+|.+ .++.+ 
T Consensus         6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~--------~~g~~Fi-DRdp~~F~~ILnylR~G~l-~~p~~~   75 (115)
T 3kvt_A            6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDP--------VLNEYFF-DRHPGVFAQIINYYRSGKL-HYPTDV   75 (115)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEET--------TTTEEEE-CSCTTTHHHHHHHHHHSCB-CCCSSS
T ss_pred             EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCC--------CCCcEEE-ecChHHHHHHHHHhcCCCC-CCCCcc
Confidence            4788999999999998886543 345555553111111        1223433 3578999999999999998 45442 


Q ss_pred             hHHHHHHHHhccCchHHH
Q 007949          422 QAEEMFDAASRYLLFPLK  439 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~l~  439 (583)
                      ....++..|.+|++++..
T Consensus        76 ~~~~~~~Ea~fy~i~~~~   93 (115)
T 3kvt_A           76 CGPLFEEELEFWGLDSNQ   93 (115)
T ss_dssp             CHHHHHHHHHHHTCCGGG
T ss_pred             cHHHHHHHHHHhCCChHH
Confidence            467899999999997743

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=84.34  E-value=0.76  Score=36.92  Aligned_cols=79  Identities=8%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             EEEEECCEeEehhHHHHhhccHHHHHhhcCC----CCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHHH
Q 007949          173 VVFYVQGRPIEAHRVILSARSVFFRRKFETD----WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVKI  247 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~----~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~~  247 (583)
                      |++.|||..|...+..|.....   .||...    ........+-+ +=+|..|..||+|+-+|.+.++.+ .+..++.-
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E   77 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE   77 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence            6788999999999999975432   223221    01112344555 468999999999999999877665 35666666


Q ss_pred             HhHhchHH
Q 007949          248 CKVCKCES  255 (583)
Q Consensus       248 a~~~~~~~  255 (583)
                      |+.+++..
T Consensus        78 a~fy~i~~   85 (105)
T 1nn7_A           78 LAFFGLIP   85 (105)
T ss_dssp             HHHHTCCS
T ss_pred             HHHcCCCH
Confidence            66665443

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=84.21  E-value=0.47  Score=40.35  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             cEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH-h
Q 007949          344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD-Q  422 (583)
Q Consensus       344 Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~-~  422 (583)
                      -|++-|+|..|...+..|....   ..|+...+.+.-.     ......+-+ +=++..|+.+|+|+.+|.+ .++.+ .
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~-----~~~~g~yFi-DRdp~~F~~ILnflR~G~l-~~p~~~~  105 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFF-----NEDTKEYFF-DRDPEVFRCVLNFYRTGKL-HYPRYEC  105 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSE-----ETTTTEEEE-CSCHHHHHHHHHHHHHSSB-CCCTTSC
T ss_pred             EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccc-----cCCCCeEEE-eCCcHHHHHHHHHHhcCCc-CCCCCcC
Confidence            5788899999999998885432   1233321111000     001233444 3589999999999999998 45443 4


Q ss_pred             HHHHHHHHhccCchHH
Q 007949          423 AEEMFDAASRYLLFPL  438 (583)
Q Consensus       423 ~~~ll~~A~~~~~~~l  438 (583)
                      +..++..|++|+++.+
T Consensus       106 ~~~l~eEa~fy~i~~l  121 (140)
T 2nz0_B          106 ISAYDDELAFYGILPE  121 (140)
T ss_dssp             HHHHHHHHHHHTCCGG
T ss_pred             HHHHHHHHHHcCCChH
Confidence            7889999999999886

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=83.14  E-value=0.76  Score=36.52  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             EEEEECCEeEehhHHHHhhccH-HHHHhhcCC-CCCCcccEEEcCCCCHHHHHHHhhhhcC-CcccCChh-hHHHHHHHH
Q 007949          173 VVFYVQGRPIEAHRVILSARSV-FFRRKFETD-WRYRNEIRFSREKLSYPALYGLIHFFYS-DRLEIAVD-DMEDLVKIC  248 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~S~-~f~~~~~~~-~~e~~~~~i~l~~v~~~~~~~lL~ylYt-g~~~i~~~-~~~~ll~~a  248 (583)
                      |++.|||..|...+..|...-. .+..|+... .-......+-+ +=+|..|..||+|+-+ |.+.++.+ .+..++.-|
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea   81 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence            6788999999999999864321 233333211 11112334544 5689999999999999 89876655 345566666


Q ss_pred             hHhchH
Q 007949          249 KVCKCE  254 (583)
Q Consensus       249 ~~~~~~  254 (583)
                      +.+++.
T Consensus        82 ~fy~i~   87 (100)
T 1t1d_A           82 KFYELG   87 (100)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	583
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	5e-11
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	3e-07
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	8e-11
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	4e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           AS  G +  ++ +L+ G + N  +      L+ A  AGH + A+ LL++ A  +    D 
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 100 DRC-HYAAL--NLKVRKLLKAYEARP 122
               H AA   +  + KLL    A P
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 8e-08
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
             + S+     PL          A+RAG  +  +Y+L++   VNA+ + D   L+ A   
Sbjct: 25  SPNVSNVKVETPL--------HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 76

Query: 77  GHLDAARMLLESGAICSEHTFDGDRCHYAA 106
           GH +  ++LLE+ A  +  T  G    + A
Sbjct: 77  GHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
           A++ G V     +LE   + NA  +     L+ A    +LD  ++LL  G       ++G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-06
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 44  GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC- 102
           G++  ++++L+   +VNA+ +     L+ A   GH D   +LL++GA  +E + DG    
Sbjct: 308 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 367

Query: 103 HYAALN--LKVRKLLKAYEARPP 123
             A     + V  +LK       
Sbjct: 368 AIAKRLGYISVTDVLKVVTDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
           A++ G  D +  +L++G + N      +  L  A   G++    +L
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 69  ALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEARP 122
            L+ A   GHL   + LL+ GA  +      +   H AA   + +V K L   +A+ 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 54  ESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL--NLK 110
           E   +     +     L+ A   G +  A +LLE  A  +    +G    H A    NL 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 111 VRKLLKAYEARP 122
           + KLL      P
Sbjct: 180 IVKLLLPRGGSP 191

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 5e-11
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
             L DV + VD + F  H+ VLA  S+ F+    R                       LS
Sbjct: 26  GTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS--------------QHYTLDFLS 71

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
            +TF++++EY YT  L     +  +++  AA    +  L+     +L
Sbjct: 72  PKTFQQILEYAYTATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKML 117

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DVV  V  +   AHR +L+  S  F   F  + ++      S +          + + Y+
Sbjct: 30  DVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQI-----LEYAYT 84

Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEKEL 264
             L+   +D++DL+   ++ + E L+    K L
Sbjct: 85  ATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 117

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 8e-11
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
           D L DV + V ++ FR H+ VL + S  F +  +         + L  ++     + +++
Sbjct: 23  DILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT---------DQLKRNLSVINLDPEIN 73

Query: 400 KETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL 446
            E F  ++++MYT  L ++       +   A    +  +       +
Sbjct: 74  PEGFNILLDFMYTSRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFI 119

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 18/93 (19%), Positives = 35/93 (37%)

Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
           DVV  V      AH+ +L A S  F   F    +    +     +++      L+ F Y+
Sbjct: 27  DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYT 86

Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEKEL 264
            RL +   ++  ++      + E +     K +
Sbjct: 87  SRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 42  RAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            A     L  +L++G +  AR       L  A L  +   AR+L   GA   E   DG
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE---DG 255

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 20/99 (20%), Positives = 24/99 (24%), Gaps = 13/99 (13%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYI---LESGVNVNARDQWDSVALYYA 73
           D       S V          F A+  G    L  +   L S   V      +  A   A
Sbjct: 82  DAHKKGIKSEVIC--------FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Query: 74  CLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVR 112
              GHL     L E               +Y A  L   
Sbjct: 134 AENGHLHVLNRLCELAPTE--IMAMIQAENYHAFRLAAE 170

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 39  EASRAGDVDRLRYILESG-----VNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
             +    +D +R++L                  +  L  A   G+  A  +LL   ++
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 11/186 (5%)

Query: 15  EIDLDASDFSSSVPL---KKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALY 71
           E+ L    +  ++ +          V +          R   +   + + +     V  +
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 95

Query: 72  YACLAGHLDA---ARMLLESGAICSEHTFDGDRC-HYAALN--LKVRKLLKAYEARPPPL 125
            A + G   A     +LL S  I      +  +    AA N  L V   L   E  P  +
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL--CELAPTEI 153

Query: 126 GPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPPDVVFYVQGRPIEAH 185
             +  A         A    L     +  ++   +     ++++       V        
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 186 RVILSA 191
             +L  
Sbjct: 214 NFLLDC 219

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 38  FEASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGAICSEHT 96
            +A +  DVD ++ +LE G NVN +++      L+ A      D   +LL  GA      
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69

Query: 97  FDGDRCHYAA 106
            +G      A
Sbjct: 70  KNGATPFLLA 79

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 17  DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACL 75
           D++        PL          A     +  ++ +LE   + +N  D     AL  A  
Sbjct: 211 DVNVRGERGKTPL--------ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 76  AGHLDAARMLLESGA 90
                 A +L + GA
Sbjct: 263 LKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-06
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 50  RYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTFDGDRC-HYAAL 107
             +L+ G +VN R +     L  A    HL   + LLE      ++   DG      A  
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 108 N--LKVRKLLKAYEARP 122
               K+ +LL    A  
Sbjct: 263 LKLKKIAELLCKRGAST 279

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 40  ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87
           A++ G ++ + Y+++ G +V A D  D  A   A    H +   +   
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 56  GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAALN--LKVR 112
           G N + +D+     +  A   G ++    L++ GA               A  N    + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 113 KLL 115
            + 
Sbjct: 271 DIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
             AG       I    VN+    + +   L++       + +  L+   A
Sbjct: 8  TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 38  FEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97
             A  +GD + +  +LE G ++N  +     AL+ AC+  ++D  + L+E+GA  ++   
Sbjct: 45  LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 98  DGDRCHY 104
           +G    +
Sbjct: 105 EGWIPLH 111

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 42  RAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR 101
             G  + L+ ++++  +VN +D      L+ A   G  +A R+L+E+          G  
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267

Query: 102 C-HYAALNLKVRKLLKAYEAR 121
               A  +  +   L+  + +
Sbjct: 268 AFDVADED--ILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 66  DSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAA 106
           D      AC +G  +    LLE GA  +    DG    + A
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 38  FEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
            +A    +  +++ +L S    +  +DQ   + L+++      +    LL      +   
Sbjct: 5   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 64

Query: 97  FDGDRCHY 104
           +  D    
Sbjct: 65  YPDDSGWT 72

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 34  NGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAAR 83
           +  +  AS  G +  +R ++ SG + + ++  +   L  A     +D  R
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 16  IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACL 75
           +        S    K+    D     +   ++ L         +NA+D      L  A  
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 76  AGHLDAARMLLESGAICSEHTFDGDRC-HYAA 106
            G++     LL+ GA        G R   + A
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 47  DRLRYILESGVNVNAR-DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYA 105
           +       + +N+N   D+  +  L++     +L+  + L++ G+        G+ C   
Sbjct: 87  EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 146

Query: 106 A 106
           A
Sbjct: 147 A 147

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 50  RYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
           + +L++  N    D  D +    A    H D  R+L
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 49  LRYILESGVNVNAR-DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHY 104
           +  +L  G  +NA  D+    +L+ A      DAA+ LL++GA  +     G    +
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 44  GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87
             V+  + ++  G ++   ++ +   L  A   G     + ++E
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 51  YILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
            +L  G  VNA +Q     L+YA      + A MLLE GA         
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 136

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 32 VPNGDVFEASRAGDVDRLR-YILESGVNVNARDQWDSVALYYACLAGH 78
          V N  V   + +G ++ L+  IL         DQ    AL++AC AGH
Sbjct: 2  VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 6/46 (13%), Positives = 13/46 (28%)

Query: 45  DVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
           + D +  +L+ G +VN                      + L +   
Sbjct: 157 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 38  FEASRAGDVDRLRYILESGVNVNAR------DQWDSVALYYACLA---GHLDAARMLLES 88
            EA +  D+  L      GV++  +       + D  AL+ A  +     L     L+++
Sbjct: 11  CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 70

Query: 89  GAICSEHTFDGDRCHY 104
                + T  G    +
Sbjct: 71  SGNLDKQTGKGSTALH 86

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 69  ALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHY 104
            L  A   G L+    LL++    +     G     
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 58  NVNARDQWDSVALYYACLAGHLDAARMLLESG 89
           NV  R+     A   A L G  +   ++  +G
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	583
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.84
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.76
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.73
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.68
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.68
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.61
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.6
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.58
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.57
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.57
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.56
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.56
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.56
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.54
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.54
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.54
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.53
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.53
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.5
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.49
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.46
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.4
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.39
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.38
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.38
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.38
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.36
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.35
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.34
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.32
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.28
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.23
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.19
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	96.78
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	96.42
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.87
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	94.23
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.01
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	94.01
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	92.72
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	91.89
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	91.58
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	91.52
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	90.82
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	90.73
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	90.52
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	90.52

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=163.75  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=102.1

Q ss_pred             hhhHHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHH
Q 007949          323 ICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKET  402 (583)
Q Consensus       323 ~~~l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~  402 (583)
                      ++.-.++++.++.++.++.+||+++.++|+.|+|||.+|+++|+||++||.+              ....+.++++++++
T Consensus         9 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~--------------~~~~i~~~~v~~~~   74 (121)
T d1buoa_           9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR--------------NSQHYTLDFLSPKT   74 (121)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS--------------CCSEEEECSSCHHH
T ss_pred             CchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccC--------------ccceeecCCCCHHH
Confidence            4455677888888999999999999999999999999999999999999986              23579999999999


Q ss_pred             HHHHhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 007949          403 FEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLL  448 (583)
Q Consensus       403 ~~~~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  448 (583)
                      |+.+++|+|||++ .++.+++.+++.+|++|+++.|++.|+++|.+
T Consensus        75 f~~ll~~~Ytg~i-~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          75 FQQILEYAYTATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHHHSCC-CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHheEcccc-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999 89999999999999999999999999999964

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5e-21  Score=162.20  Aligned_cols=113  Identities=18%  Similarity=0.259  Sum_probs=102.8

Q ss_pred             HHHHHHHhcccccCCCCCcEEEEECCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHH
Q 007949          326 LSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEK  405 (583)
Q Consensus       326 l~~~l~~l~~l~~~~~~~Dv~~~~~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~  405 (583)
                      -.+++..|+.+++++.+||+++.++|+.|+|||.+|+++|+||++||.+  +|.|+.       ...+.++++++++|+.
T Consensus         9 ~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~--~~~e~~-------~~~~~~~~v~~~~f~~   79 (122)
T d1r29a_           9 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD--QLKRNL-------SVINLDPEINPEGFNI   79 (122)
T ss_dssp             HHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTS--TTTTTC-------SEEECCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhcc--chhhhc-------ceeeeecccCHHHHHH
Confidence            3567788888999999999999999999999999999999999999987  676653       3456678999999999


Q ss_pred             HhhhhcCCCCCCCCHHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 007949          406 MIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLL  448 (583)
Q Consensus       406 ~l~~iYt~~~~~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  448 (583)
                      +++|+|||++ .++.+++.+++.+|++|+++.|++.|.++|.+
T Consensus        80 ll~~~Ytg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          80 LLDFMYTSRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhhhcCCee-cCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            9999999999 79999999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=6.8e-19  Score=148.30  Aligned_cols=104  Identities=21%  Similarity=0.150  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKV  111 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i  111 (583)
                      ++|++|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +|+|+.  +.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            4589999999999999999999999999999999999999999999999999999999999999998 588777  7999


Q ss_pred             HHHHHhCCCCCCCCCCcccCCccchhccc
Q 007949          112 RKLLKAYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus       112 ~~~L~~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      +++|+++|++++.  ++..|.||||+|..
T Consensus        84 v~~Ll~~Gad~~~--~d~~G~t~l~~a~~  110 (118)
T d1myoa_          84 VKLLLSKGADKTV--KGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHTTCCCSSS--SSSSTCCCCCTCSS
T ss_pred             hhhhhccccccee--eCCCCCCHHHHHhH
Confidence            9999999999887  79999999999864

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=146.89  Aligned_cols=100  Identities=19%  Similarity=0.261  Sum_probs=90.1

Q ss_pred             ccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccC
Q 007949          157 GVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEI  236 (583)
Q Consensus       157 ~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i  236 (583)
                      .+..++.+      |||++.++|++|+|||+||+++|+||++||.+++.+.....+.++++++++|+.+|+|+|||++.+
T Consensus        18 ~l~~~~~~------~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i   91 (122)
T d1r29a_          18 RLRSRDIL------TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNL   91 (122)
T ss_dssp             HHHHTTCS------CCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhcCCC------eEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecC
Confidence            44455554      599999999999999999999999999999999999888888888999999999999999999999


Q ss_pred             ChhhHHHHHHHHhHhchHHHHHHHHH
Q 007949          237 AVDDMEDLVKICKVCKCESLQRIIEK  262 (583)
Q Consensus       237 ~~~~~~~ll~~a~~~~~~~l~~~l~~  262 (583)
                      +.+++.+++.+|+.++++.|.+.+.+
T Consensus        92 ~~~~v~~ll~~A~~l~i~~L~~~C~~  117 (122)
T d1r29a_          92 REGNIMAVMATAMYLQMEHVVDTCRK  117 (122)
T ss_dssp             CTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHCcHHHHHHHHH
Confidence            99999999999999988888777754

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.6e-18  Score=141.21  Aligned_cols=98  Identities=22%  Similarity=0.368  Sum_probs=85.8

Q ss_pred             ccccccCCCCCCCCCCCcEEEEECCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcc
Q 007949          155 ISGVTSNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL  234 (583)
Q Consensus       155 ~~~l~~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~  234 (583)
                      +..+..++.++      ||++.|+|++|+|||+||+++|+||++||.++.     ..+.++++++++|+.+|+|+|||++
T Consensus        19 l~~l~~~~~~~------Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~~v~~~~f~~ll~~~Ytg~i   87 (121)
T d1buoa_          19 ANQMRLAGTLC------DVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLDFLSPKTFQQILEYAYTATL   87 (121)
T ss_dssp             HHHHHHHTTTC------CEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCCcE------eEEEEECCEEEEEEHHHhcccChhhhhhccCcc-----ceeecCCCCHHHHHHHHHheEcccc
Confidence            44455566655      999999999999999999999999999997653     3588899999999999999999999


Q ss_pred             cCChhhHHHHHHHHhHhchHHHHHHHHHH
Q 007949          235 EIAVDDMEDLVKICKVCKCESLQRIIEKE  263 (583)
Q Consensus       235 ~i~~~~~~~ll~~a~~~~~~~l~~~l~~~  263 (583)
                      .++.+++.+++.+|..++++.|.+.|..-
T Consensus        88 ~l~~~~v~~ll~~A~~l~~~~L~~~C~~~  116 (121)
T d1buoa_          88 QAKAEDLDDLLYAAEILEIEYLEEQCLKM  116 (121)
T ss_dssp             CCCGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999888887777543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-17  Score=142.12  Aligned_cols=106  Identities=24%  Similarity=0.141  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCc-h-HHHHHh--hHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD-R-CHYAAL--NLK  110 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-t-~~~aa~--~~~  110 (583)
                      +.||+|+..|+.+++++|+++|+++|.+|..|+||+|+|+ .|+.+++++|+++|++++..+..|. + +|+++.  +.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            3489999999999999999999999999999999999775 7999999999999999999998876 4 577777  899


Q ss_pred             HHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          111 VRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       111 i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      ++++|+++|++++.  ++..|.||||+|+..++
T Consensus        84 ~v~~Ll~~ga~~~~--~d~~G~T~l~~A~~~g~  114 (125)
T d1bi7b_          84 TLVVLHRAGARLDV--RDAWGRLPVDLAEELGH  114 (125)
T ss_dssp             HHHHHHHHTCCSSC--CCTTCCCHHHHHHHHTC
T ss_pred             cccccccccccccc--ccCCCCCHHHHHHHcCC
Confidence            99999999999887  78999999999998877

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.7e-17  Score=152.62  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=113.4

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |+++|.+|..|+||        ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|.
T Consensus        85 i~~~Ll~~~~d~~~~d~~g~tp--------L~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          85 IVKALLGKGAQVNAVNQNGCTP--------LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL  156 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHhccCceeEeeCCCCCch--------hhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc
Confidence            4444554 78999999999999        89999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCG  140 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~  140 (583)
                      ..|++++..|..|+| +|+++.  +.+++++|++.|++++.  ++..|.||||+|..
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~--~d~~g~tpl~~A~~  211 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI--ENKEEKTPLQVAKG  211 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHCCT
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHC
Confidence            999999999999999 577777  89999999999999888  78999999999964

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.2e-17  Score=137.49  Aligned_cols=104  Identities=21%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKV  111 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i  111 (583)
                      +.|+.||..|+.++++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|.+|+| +|+|+.  +.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            4589999999999999999999999999999999999999999999999999999999999999999 587777  8999


Q ss_pred             HHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949          112 RKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus       112 ~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                      +++|+++|++++.. ....+.||++++.
T Consensus        83 v~~Ll~~ga~v~~~-~~~~~~~~~~~~~  109 (130)
T d1ycsb1          83 CKFLVESGAAVFAM-TYSDMQTAADKCE  109 (130)
T ss_dssp             HHHHHHTTCCTTCC-CSSSCCCHHHHCC
T ss_pred             HHHHHHcCCCcccc-cCCCCCCHHHHHH
Confidence            99999999998863 2345778876654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-16  Score=133.48  Aligned_cols=105  Identities=20%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      -+++..++ |+|+|.+|..|+||        ||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~t~--------Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L   86 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPNDEGITA--------LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL   86 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCH--------HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCccccccccccc--------cccccccccccccccccccccccccccccCcccccccchhhHHHHHHHH
Confidence            45666666 89999999999999        8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCC-CCchHHHHHh-----hHHHHHHHHhCC
Q 007949           86 LESGAICSEHTF-DGDRCHYAAL-----NLKVRKLLKAYE  119 (583)
Q Consensus        86 l~~ga~~~~~~~-~g~t~~~aa~-----~~~i~~~L~~~~  119 (583)
                      +++|++++..+. .|.|+...+.     +.+++++|+..+
T Consensus        87 l~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          87 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999998775 4667544333     578999998643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=134.86  Aligned_cols=117  Identities=20%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ++++|.+|..|+||        ||+|+ .|+.+++++|++++++++..+..|.+|++.++..++.++++.++++|++++.
T Consensus        26 ~~~~n~~d~~g~t~--------L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~   96 (156)
T d1bd8a_          26 LVHPDALNRFGKTA--------LQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV   96 (156)
T ss_dssp             CCCTTCCCTTSCCH--------HHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCccCCCCCcc--------ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999        79886 5899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|..|.| +|+|+.  +.+++++|+ .|++++.  ++..|.||||+|+..++
T Consensus        97 ~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~--~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          97 PDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR--RDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC--CCTTSCCHHHHHHHSCC
T ss_pred             ccCCCCeeecccccccccccccccc-ccccccc--cCCCCCCHHHHHHHcCC
Confidence            9999998 577777  899999887 5787766  78999999999998887

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.3e-17  Score=135.27  Aligned_cols=92  Identities=23%  Similarity=0.336  Sum_probs=84.6

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      -++...++ |+|+|.+|..|+||        ||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        16 ~~v~~Ll~~g~d~n~~~~~g~t~--------lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~L   87 (118)
T d1myoa_          16 DEVKDYVAKGEDVNRTLEGGRKP--------LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL   87 (118)
T ss_dssp             HHHHHHHTTTCCCCCCSSSSCCT--------THHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhhhcccccccccccc--------ccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhh
Confidence            45566666 89999999999999        7999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCchHHHHH
Q 007949           86 LESGAICSEHTFDGDRCHYAA  106 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t~~~aa  106 (583)
                      +++|++++.+|.+|.||...|
T Consensus        88 l~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          88 LSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HTTCCCSSSSSSSTCCCCCTC
T ss_pred             hcccccceeeCCCCCCHHHHH
Confidence            999999999999999964433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=4.4e-15  Score=145.09  Aligned_cols=133  Identities=17%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCcc------------------------
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR------------------------   62 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~------------------------   62 (583)
                      .+...+. |+|+|.+|..|+||        ||+|+..|+.+++++|+++|++.+..                        
T Consensus        55 ~v~~Ll~~Gadvn~~d~~G~T~--------L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~  126 (291)
T d1s70b_          55 EVLRLLERGADINYANVDGLTA--------LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI  126 (291)
T ss_dssp             HHHHHHHHCCCTTCBCTTCCBH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCccCCCCCcH--------HHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccc
Confidence            4455565 89999999999999        78888888888888888776643322                        


Q ss_pred             ---------------------------------------------------------------------CCCChhHHHHH
Q 007949           63 ---------------------------------------------------------------------DQWDSVALYYA   73 (583)
Q Consensus        63 ---------------------------------------------------------------------d~~g~t~L~~A   73 (583)
                                                                                           +..|.||||+|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a  206 (291)
T d1s70b_         127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA  206 (291)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHH
T ss_pred             ccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHH
Confidence                                                                                 23456777888


Q ss_pred             HHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhh
Q 007949           74 CLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAE  150 (583)
Q Consensus        74 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~  150 (583)
                      +..|+.++++.|+++|++++.++..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+++...+++...
T Consensus       207 ~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~--~d~~G~TaL~~A~e~~~~~L~~~~  284 (291)
T d1s70b_         207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA--VNKVGQTAFDVADEDILGYLEELQ  284 (291)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCTTTSCCSGGGHHHHHHH
T ss_pred             HHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHHHHHHHHHHh
Confidence            8888888899999999999999999998 577777  89999999999998877  688899999999876666665543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.4e-15  Score=131.24  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=84.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCC
Q 007949           22 DFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD   98 (583)
Q Consensus        22 d~~g~tpl~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~   98 (583)
                      +..|+||        ||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..
T Consensus        42 ~~~g~t~--------Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~  113 (154)
T d1dcqa1          42 HEPDETA--------LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES  113 (154)
T ss_dssp             SSTTCBH--------HHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCch--------HHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCC
Confidence            6778888        8999974   6789999999999999999999999999999999999999999999999999999


Q ss_pred             CchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           99 GDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        99 g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                      |.|| |+|+.  +.+++++|++.+..
T Consensus       114 g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         114 GETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9995 66666  89999999987764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.5e-15  Score=130.83  Aligned_cols=126  Identities=21%  Similarity=0.183  Sum_probs=111.7

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML   85 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   85 (583)
                      .++...++ |+|+|.+|..|+||        ||+|+ .|+.+++++|+++|++++.++..|.++++.++..++..+++.|
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~Tp--------L~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l   85 (156)
T d1ihba_          15 EQLTSLLQNNVNVNAQNGFGRTA--------LQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL   85 (156)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCH--------HHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCccCCccccc--------ccccc-cccccccccccccccccccccccCccccccccccccccccccc
Confidence            45566666 89999999999999        78775 7999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCC-CCCCCCCcccCCccchhcccccc
Q 007949           86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEA-RPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        86 l~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~-~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..+.+++..+..|.+ .|+++.  +.+++++|++++. +...  ++..|.||||+|+..++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          86 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--cCCCCCCHHHHHHHcCC
Confidence            9999999999999998 466666  7999999998886 4544  78899999999998776

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=7.6e-15  Score=144.50  Aligned_cols=115  Identities=18%  Similarity=0.240  Sum_probs=95.1

Q ss_pred             cCCCCCC-CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCH-------HHHHHHH
Q 007949           15 EIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHL-------DAARMLL   86 (583)
Q Consensus        15 ~~din~~-d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~-------~~v~~Ll   86 (583)
                      ++++|.. |..|+||        ||+||..|+.++|++|+++|++++.+|..|+||||.|+..++.       ++++++.
T Consensus        96 ~~dvn~~~D~~G~T~--------LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTP--------LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             CCCSCSCCSTTCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             CCCcCcCcCCCCCCH--------HHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            5678866 9999999        8999999999999999999999999999999999999976642       2333221


Q ss_pred             ------------------------------------------hcCC----------------------------------
Q 007949           87 ------------------------------------------ESGA----------------------------------   90 (583)
Q Consensus        87 ------------------------------------------~~ga----------------------------------   90 (583)
                                                                ..+.                                  
T Consensus       168 ~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence                                                      1111                                  


Q ss_pred             ---CcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcc
Q 007949           91 ---ICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC  139 (583)
Q Consensus        91 ---~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~  139 (583)
                         .+|.+|.+|+| +|+|+.  +.+++++|+++|++++.  ++..|.|||++|+
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~--~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI--ANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC--CCTTSCCGGGGTC
T ss_pred             HhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHcC
Confidence               15777889998 588777  89999999999999988  7889999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6e-15  Score=138.23  Aligned_cols=126  Identities=21%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             chhhhc-ccCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAEL-DEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~-~~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++.... .|+++|.+|..|+||        ||+|+..|+.+++++|++.|++++.+|..|.|||++|+..|+.++++.|+
T Consensus        21 li~~~~~~~~~in~~d~~g~Tp--------Lh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~   92 (221)
T d1iknd_          21 VIRQVKGDLAFLNFQNNLQQTP--------LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT   92 (221)
T ss_dssp             CCC-----CCCCCCCCTTCCCH--------HHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCCCCCCcc--------ccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            333333 388999999999999        79999999999999999999999999888888888888777766666554


Q ss_pred             ---------------------------------------hcCCCcCcc-CCCCch-HHHHHh--hHHHHHHHHhCCCCCC
Q 007949           87 ---------------------------------------ESGAICSEH-TFDGDR-CHYAAL--NLKVRKLLKAYEARPP  123 (583)
Q Consensus        87 ---------------------------------------~~ga~~~~~-~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~  123 (583)
                                                             ..|+.++.. +.+|.| +|+|+.  +.+++++|+++|++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_          93 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             hhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc
Confidence                                                   444444443 356888 577777  8999999999999988


Q ss_pred             CCCCcccCCccchhcccccc
Q 007949          124 PLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       124 ~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .  ++..|.||||+||..+.
T Consensus       173 ~--~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         173 R--VTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             C--CCTTCCCGGGGCTTSSC
T ss_pred             c--cCCCCCCHHHHHHHCCC
Confidence            7  78999999999998776

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.56  E-value=8.7e-15  Score=141.59  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHH----------
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM----------   84 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----------   84 (583)
                      |+|||.+|.+|+||        ||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++.+.          
T Consensus        64 Gadvn~~d~~G~Tp--------Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~  135 (277)
T d2fo1e1          64 GADVNAMDCDENTP--------LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  135 (277)
T ss_dssp             CCCTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             CCCccccCCCCCee--------eccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccc
Confidence            89999999999999        899999999999999999999999999999999999887776544322          


Q ss_pred             -----------------------------------------------------------------------HHhcCCCcC
Q 007949           85 -----------------------------------------------------------------------LLESGAICS   93 (583)
Q Consensus        85 -----------------------------------------------------------------------Ll~~ga~~~   93 (583)
                                                                                             +...+.+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~  215 (277)
T d2fo1e1         136 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  215 (277)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             ccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc
Confidence                                                                                   234566777


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+|..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~--~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNH  266 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--CCSSSCCHHHHHHHTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC--cCCCCCCHHHHHHHcCC
Confidence            77888888 577776  88999999999999877  78999999999998887

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=135.23  Aligned_cols=68  Identities=16%  Similarity=0.267  Sum_probs=60.3

Q ss_pred             CCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCC
Q 007949           24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILE----SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG   99 (583)
Q Consensus        24 ~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   99 (583)
                      +|+||        ||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++.+..+..|
T Consensus         2 dG~Tp--------Lh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~   73 (228)
T d1k1aa_           2 DGDTP--------LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG   73 (228)
T ss_dssp             TTCCH--------HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCccH--------HHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccc
Confidence            68899        899999999999998875    799999999999999999999999999999999888766554444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=1.9e-15  Score=140.02  Aligned_cols=125  Identities=19%  Similarity=0.164  Sum_probs=106.2

Q ss_pred             hhhhcc-cCCCCCC-CCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc-------------------------
Q 007949            9 IDAELD-EIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA-------------------------   61 (583)
Q Consensus         9 ~~~~~~-~~din~~-d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------------------   61 (583)
                      +...++ |+|+|.+ |.+|.||        ||+||..|+.+++++|+..|++++.                         
T Consensus         5 v~~Ll~~g~din~~~d~~G~t~--------L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           5 ISDLLAQGAELNATMDKTGETS--------LHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCCCCcCcCcCCCCCCH--------HHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence            334444 7778874 8899999        7999999999999999998775444                         


Q ss_pred             ------------------------------------------cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCC
Q 007949           62 ------------------------------------------RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG   99 (583)
Q Consensus        62 ------------------------------------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   99 (583)
                                                                ++..|+|||++++..|...+++.++.++++++..|..|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  156 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD  156 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccc
Confidence                                                      33456788999999999999999999999999999999


Q ss_pred             ch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          100 DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       100 ~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .| +|+|+.  +.+++++|+++|++++.  ++..|.||||+||..++
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~--~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREI--TDHMDRLPRDVASERLH  201 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCC
Confidence            98 577777  89999999999999877  78899999999998887

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.5e-14  Score=127.02  Aligned_cols=105  Identities=21%  Similarity=0.203  Sum_probs=95.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcc------CCCChhHHHHHHHh---CCHHHHHHHHhcCCCcCccCCCCch-HHHHH
Q 007949           37 VFEASRAGDVDRLRYILESGVNVNAR------DQWDSVALYYACLA---GHLDAARMLLESGAICSEHTFDGDR-CHYAA  106 (583)
Q Consensus        37 L~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa  106 (583)
                      |+.|++.+++..+..++..|++++.+      +..|+||||+|+..   |+.+++++|+++|++++.+|..|.| +|+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            77899999999999999999887664      67899999999985   6789999999999999999999999 58887


Q ss_pred             h--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          107 L--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       107 ~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~--~d~~g~tpL~~A~~~~~  126 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEI--ANESGETPLDIAKRLKH  126 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccCccccc--cCCCCCCHHHHHHHcCC
Confidence            7  89999999999999888  78999999999998877

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.7e-15  Score=126.34  Aligned_cols=102  Identities=21%  Similarity=0.185  Sum_probs=90.6

Q ss_pred             cchhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCh-hHHHHHHHhCCHHHHHH
Q 007949            7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDS-VALYYACLAGHLDAARM   84 (583)
Q Consensus         7 ~~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~   84 (583)
                      .++...++ |+|+|.+|..|+||        +|.| ..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++
T Consensus        17 ~~v~~Ll~~gad~n~~~~~g~t~--------l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~   87 (125)
T d1bi7b_          17 EEVRALLEAGANPNAPNSYGRRP--------IQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV   87 (125)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCT--------TTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCcccccccccccc--------cccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            44556666 89999999999999        5755 57999999999999999999998876 69999999999999999


Q ss_pred             HHhcCCCcCccCCCCch-HHHHHh--hHHHHHHHHh
Q 007949           85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKA  117 (583)
Q Consensus        85 Ll~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~  117 (583)
                      |+++|++++.+|..|+| +|+|+.  +.+++++|++
T Consensus        88 Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          88 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999 577777  8999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=135.79  Aligned_cols=161  Identities=18%  Similarity=0.125  Sum_probs=128.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.+++.+|..|+||        ||+||..|+.+++++++..+......+..+.++++.++..|+.+++++|+++|++++.
T Consensus        27 ~~~~~~~D~~G~Tp--------Lh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~   98 (223)
T d1uoha_          27 KSLATRTDQDSRTA--------LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA   98 (223)
T ss_dssp             GGGGGCCCTTSCCH--------HHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCcCcCCCCCCH--------HHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEe
Confidence            77899999999999        8999999999999999999999888888999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccccchhhhhhhcccccccCCCCCCCCCCC
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDSFPP  171 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~  171 (583)
                      .|..|.| +|+|+.  +.+++++|+++|++++.  .+..|.||||.|+..++....+.        +...        ..
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~--~~~~~~t~L~~a~~~~~~~~~~~--------L~~~--------~~  160 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHI--------LLYY--------KA  160 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHH--------HHHT--------TC
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCccchhhhhcCCcchhhh--------hccc--------cc
Confidence            9999998 477766  79999999999998877  68889999999998877432211        1000        01


Q ss_pred             cEEEEECCEeEehhHHHHhhccHHHHHhhc
Q 007949          172 DVVFYVQGRPIEAHRVILSARSVFFRRKFE  201 (583)
Q Consensus       172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~~~~  201 (583)
                      |+-..-.....+.|.++...+.+.++.++.
T Consensus       161 ~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         161 STNIQDTEGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             eeeeccCCCCceeccccccCcHHHHHHHHH
Confidence            222222334567887776665565655554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=8e-15  Score=140.23  Aligned_cols=93  Identities=15%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           19 DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN---VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        19 n~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      +..|++|.||        ||+||..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus         3 ~~i~~~G~t~--------Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~   74 (255)
T d1oy3d_           3 GYVTEDGDTA--------LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA   74 (255)
T ss_dssp             CCCCTTCCCH--------HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             ccCCcCCCCH--------HHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccc
Confidence            4567899999        8999999999999999999887   6778899999999999999999999999999999999


Q ss_pred             CCCCchH-HHHHh--hHHHHHHHHhCC
Q 007949           96 TFDGDRC-HYAAL--NLKVRKLLKAYE  119 (583)
Q Consensus        96 ~~~g~t~-~~aa~--~~~i~~~L~~~~  119 (583)
                      |..|.|| |+|+.  +.+++++|++.+
T Consensus        75 d~~g~tpL~~A~~~~~~~~~~~Ll~~~  101 (255)
T d1oy3d_          75 ERGGHTALHLACRVRAHTCACVLLQPR  101 (255)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSC
T ss_pred             ccccchhhhhhhccCchHHHHHHHhhc
Confidence            9999985 66665  778888886544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.8e-14  Score=123.61  Aligned_cols=126  Identities=20%  Similarity=0.260  Sum_probs=103.7

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      ++...++ |++++ .|..|+||        ||+|+..++.++++.++.........+..+.++++.++...+.++++++.
T Consensus        17 ~v~~LL~~ga~~~-~~~~g~t~--------L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (153)
T d1awcb_          17 EVRILMANGAPFT-TDWLGTSP--------LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHHHHHTCCCC-CCTTCCCH--------HHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCCcc-cccCCCcc--------ccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            4445555 66666 57778888        68888888888888777777666666777778888888888888889999


Q ss_pred             hcCCCcCccCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhccccccc
Q 007949           87 ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ  144 (583)
Q Consensus        87 ~~ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  144 (583)
                      .+|++++.++.+|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+||.+++.
T Consensus        88 ~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~--~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT--QSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCH
T ss_pred             ccCCccccccccCchHHHhhhhcchhheeeeccccccCCcc--cCCCCCCHHHHHHHcCCH
Confidence            999999999999999 577777  89999999999999887  789999999999988873

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=127.82  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=95.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchH-HHHHh--hHHH
Q 007949           35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL--NLKV  111 (583)
Q Consensus        35 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i  111 (583)
                      +.||+||..|+.++++.|+++|+++|.+|..|+||||+|+ .|+.+++++|+++|++++..+..|.++ +.++.  +...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            3489999999999999999999999999999999999886 799999999999999999999999984 55555  7888


Q ss_pred             HHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          112 RKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       112 ~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..|+..+.+.+.  .+..|.+|++.|+..++
T Consensus        82 ~~~l~~~~~~~~~--~~~~~~~~l~~a~~~~~  111 (156)
T d1ihba_          82 LQTLLEFQADVNI--EDNEGNLPLHLAAKEGH  111 (156)
T ss_dssp             HHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccc--ccccccccccccccccc
Confidence            9999999988777  68899999999998777

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=9.8e-14  Score=132.48  Aligned_cols=99  Identities=23%  Similarity=0.336  Sum_probs=92.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCChhHHHHHHHhCCHHHHHHHHhcCCCcC
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNA-RDQWDSVALYYACLAGHLDAARMLLESGAICS   93 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   93 (583)
                      +.++|.+|..|+||        ||+|+..|+.+++++|++.+++.+. .+..|.||||+|+..|+.+++++|+++|++++
T Consensus       148 ~~~in~~d~~g~Tp--------Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         148 RLQLEAENYDGHTP--------LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             GGGTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CcccccccccCccc--------ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC
Confidence            77899999999999        8999999999999999999998775 46789999999999999999999999999999


Q ss_pred             ccCCCCch-HHHHHh--hHHHHHHHHhCCCC
Q 007949           94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        94 ~~~~~g~t-~~~aa~--~~~i~~~L~~~~~~  121 (583)
                      .+|..|.| +|+|+.  +.+++++|+++|++
T Consensus       220 ~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         220 ARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999 577666  99999999999996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.7e-14  Score=142.29  Aligned_cols=119  Identities=19%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.+++..|..|.||        ++.|+..++.+++++|+++|++++..+..+.||||.++..++.++++++++.|++++.
T Consensus       254 ~~~~~~~~~~g~~~--------l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~  325 (408)
T d1n11a_         254 QANGNLGNKSGLTP--------LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  325 (408)
T ss_dssp             TCCTTCCCTTCCCH--------HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             ccccccccCCCCCh--------hhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccc
Confidence            67788888899999        8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +|.+|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|...++
T Consensus       326 ~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~--~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE--VSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCSSSCCHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCC
Confidence            9999999 688777  89999999999999887  79999999999999887

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2e-13  Score=127.95  Aligned_cols=115  Identities=17%  Similarity=0.144  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcC-CCcCcc
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG-AICSEH   95 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~   95 (583)
                      +....+..+.||        ++.++..++.++++.|+..|.+.+.+|..|+||||+|+..|+.+++++|+..| .+++.+
T Consensus        97 ~~~~~~~~~~~~--------l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~  168 (229)
T d1ixva_          97 DLNKITNQGVTC--------LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ  168 (229)
T ss_dssp             CTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCC
T ss_pred             cccccccccccc--------cccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccccc
Confidence            455567778888        79999999999999999999999999999999999999999999999999887 688999


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCccchhcccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGA  141 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~  141 (583)
                      |..|.| +|+|+.  +.+++++|++ .|++++.  ++..|.||||+|+..
T Consensus       169 d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~--~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDNKGAKAEDVALNE  216 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--CCTTSCCTGGGCSCH
T ss_pred             ccccCCchhhhcccccHHHHHHHHHhcCCCCCC--cCCCCCCHHHHHhhH
Confidence            999998 577777  8899999986 5899888  788999999999853

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=6.8e-13  Score=116.03  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=94.3

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--hHH
Q 007949           34 NGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLK  110 (583)
Q Consensus        34 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~~~  110 (583)
                      .++||.||+.|+.+++++|+++|++++ .|..|+||||+|+..++.++++.++.........+..+.+ .+.++.  +.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            355999999999999999999999887 6899999999999999999999999888777777777776 555555  888


Q ss_pred             HHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          111 VRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       111 i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +++++..++++...  ++..|.||||+||..++
T Consensus        82 ~~~~l~~~~~~~~~--~~~~g~T~L~~A~~~g~  112 (153)
T d1awcb_          82 IVEVLLKHGADVNA--KDMLKMTALHWATEHNH  112 (153)
T ss_dssp             HHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             eeecccccCCcccc--ccccCchHHHhhhhcch
Confidence            99999999998777  68899999999998877

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.38  E-value=5.1e-15  Score=148.67  Aligned_cols=118  Identities=19%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             CCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHH---HHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRY---ILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        18 in~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~---Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      ++.++..|.||        ||+||..|+.+++++   |++.|+++|.+|..|+||||+||..||.+++++|+++|++++.
T Consensus        83 ~~~~~~~~~t~--------L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~  154 (346)
T d2ajaa1          83 AHKKGIKSEVI--------CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM  154 (346)
T ss_dssp             HHHHTCCHHHH--------HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH
T ss_pred             HHhccCCCCcH--------HHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc
Confidence            44556677777        899999999887765   7889999999999999999999999999999999999999988


Q ss_pred             cC--CCCch-HHHHHh--hHHHHHHHHhCCCCCCCC-CCcccCCccchhcccccc
Q 007949           95 HT--FDGDR-CHYAAL--NLKVRKLLKAYEARPPPL-GPLQAALRDTFLGCGANR  143 (583)
Q Consensus        95 ~~--~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~-~~~~~~~t~L~~A~~~~~  143 (583)
                      .+  .+|.| +|+||.  +.+++++|++.|+..... .....+.||++.|+.+|+
T Consensus       155 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~  209 (346)
T d2ajaa1         155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH  209 (346)
T ss_dssp             HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCH
Confidence            76  35788 588877  899999999998764221 123456788888998877

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.38  E-value=1.5e-13  Score=132.65  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=99.3

Q ss_pred             cchhhhcccCCCCCCC-CCCCCCCCCCCcHHHHHHHHcCCHHHHHHH--------HHcCCCCCccCCCChhHHHHHHHhC
Q 007949            7 STIDAELDEIDLDASD-FSSSVPLKKVPNGDVFEASRAGDVDRLRYI--------LESGVNVNARDQWDSVALYYACLAG   77 (583)
Q Consensus         7 ~~~~~~~~~~din~~d-~~g~tpl~~~~~~~L~~A~~~g~~~~v~~L--------l~~g~~~~~~d~~g~t~L~~A~~~g   77 (583)
                      +.+.+.+...++|..| +.|+||        ||+||..|+.++++.|        ++.|+++|.+|.+|+||||+|+..|
T Consensus        14 ~~~~~~l~~~~~n~~~~~~g~T~--------Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g   85 (277)
T d2fo1e1          14 YAITEPITRESVNIIDPRHNRTV--------LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR   85 (277)
T ss_dssp             SCCCSCCSTTTTTTCCCSSCCCH--------HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcCCCCCCccH--------HHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccc
Confidence            5566666666677666 469999        8999999999888776        5679999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCC---CCCCCCCcccCCccchhcccccc
Q 007949           78 HLDAARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEA---RPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        78 ~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~---~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +.+++++|+++|++++.++..|.|+ +++..  +.++...+...+.   .+..  .+..+.++.+.+.....
T Consensus        86 ~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  155 (277)
T d2fo1e1          86 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE--LDRNGMTALMIVAHNEG  155 (277)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC--CCTTSCCHHHHHHHSCS
T ss_pred             cccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccc--cccccchhHHHHHhccc
Confidence            9999999999999999999999995 55555  6677777665432   2222  45567777777665444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1e-12  Score=115.50  Aligned_cols=101  Identities=22%  Similarity=0.268  Sum_probs=91.1

Q ss_pred             hhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHh
Q 007949            9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE   87 (583)
Q Consensus         9 ~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   87 (583)
                      +...+. +.++|..+..|.+|        +++++..++.++++.++++|+++|.+|..|+||||+|+..|+.+++++|+ 
T Consensus        51 v~~Ll~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-  121 (156)
T d1bd8a_          51 ALELLKQGASPNVQDTSGTSP--------VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-  121 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCH--------HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-
T ss_pred             ccccccccccccccccccccc--------cccccccccccccccccccccccccccCCCCeeecccccccccccccccc-
Confidence            334444 78899999999999        89999999999999999999999999999999999999999999999887 


Q ss_pred             cCCCcCccCCCCchH-HHHHh--hHHHHHHHHhC
Q 007949           88 SGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAY  118 (583)
Q Consensus        88 ~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~  118 (583)
                      .|++++.+|.+|+|| |+|+.  +.+++++|+++
T Consensus       122 ~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            789999999999995 66666  89999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1.1e-12  Score=121.06  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCc
Q 007949           15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE   94 (583)
Q Consensus        15 ~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   94 (583)
                      +.+++.++..|+||        |++|+..|...+++.++..+.+++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       113 ~~~~~~~~~~~~t~--------l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         113 DADINAADNSGKTA--------LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI  184 (209)
T ss_dssp             TCCTTCBCTTSCBH--------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccCCCCCCc--------chhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCC
Confidence            78899999999999        8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchH-HHHHh--hHHHHHHH
Q 007949           95 HTFDGDRC-HYAAL--NLKVRKLL  115 (583)
Q Consensus        95 ~~~~g~t~-~~aa~--~~~i~~~L  115 (583)
                      .|..|+|| |+|+.  +.+++++|
T Consensus       185 ~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         185 TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999995 77777  88999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=9.8e-13  Score=128.00  Aligned_cols=110  Identities=21%  Similarity=0.213  Sum_probs=99.3

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCch-HHHHHh--h
Q 007949           32 VPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--N  108 (583)
Q Consensus        32 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~~~aa~--~  108 (583)
                      ++.++|++||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++....+..+.+ ++.++.  +
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            3456699999999999999999999999999999999999999999999999999999999999888888 466665  8


Q ss_pred             HHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949          109 LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus       109 ~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .++++.|+++|.....  .+..+.+++++|+..+.
T Consensus       119 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~a~~~~~  151 (291)
T d1s70b_         119 LDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAM  151 (291)
T ss_dssp             HHHHHHHHHTTCCTTC--CCTTSCCHHHHCCSHHH
T ss_pred             cchhhcccccCccccc--ccccCcccccccccccc
Confidence            9999999999988777  68889999999997666

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=133.20  Aligned_cols=126  Identities=26%  Similarity=0.336  Sum_probs=100.1

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHH
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL   86 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   86 (583)
                      +++..++ |+++|.+|..|+||        ||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        15 ~v~~Ll~~g~~in~~d~~g~Tp--------L~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll   86 (408)
T d1n11a_          15 IVKNLLQRGASPNVSNVKVETP--------LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL   86 (408)
T ss_dssp             HHHHHHHTTCCSCCSSSCCCCH--------HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCH--------HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444454 78899999999999        79999999999999999999999999999999999999999999998888


Q ss_pred             hcCCCcC---------------------------------ccCCCCchH-HHHHh--hHHHHHHHHhCCCCCCCCCCccc
Q 007949           87 ESGAICS---------------------------------EHTFDGDRC-HYAAL--NLKVRKLLKAYEARPPPLGPLQA  130 (583)
Q Consensus        87 ~~ga~~~---------------------------------~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~~~~~~~~~~  130 (583)
                      ..++++.                                 ..+..|.++ +.++.  +.++++.|++++++++.  .+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~--~~~~  164 (408)
T d1n11a_          87 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA--AGKN  164 (408)
T ss_dssp             HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCSS
T ss_pred             HhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCc
Confidence            6655432                                 234455553 44444  68889999999988877  6778


Q ss_pred             CCccchhcccccc
Q 007949          131 ALRDTFLGCGANR  143 (583)
Q Consensus       131 ~~t~L~~A~~~~~  143 (583)
                      |.+||+.|+..++
T Consensus       165 ~~~~L~~A~~~~~  177 (408)
T d1n11a_         165 GLTPLHVAVHHNN  177 (408)
T ss_dssp             CCCHHHHHHHTTC
T ss_pred             CchHHHHHHHcCC
Confidence            8999999997766

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=2.9e-12  Score=119.89  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=77.7

Q ss_pred             cCCCC---CCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCChhHHHHHHHhCCHHHHHHHHhcC
Q 007949           15 EIDLD---ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN--VNARDQWDSVALYYACLAGHLDAARMLLESG   89 (583)
Q Consensus        15 ~~din---~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   89 (583)
                      |++++   ..+..|.+|        +|+++..+..++++.++..+..  ....+..+.|+++.++..++.+++++|+..|
T Consensus        57 ga~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  128 (229)
T d1ixva_          57 MENVNLDDYPDDSGWTP--------FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG  128 (229)
T ss_dssp             CTTCCGGGCCCTTSCCH--------HHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hcccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence            55554   345556666        6777777777777776666543  3335566677777777777777777777777


Q ss_pred             CCcCccCCCCch-HHHHHh--hHHHHHHHHhCCC-CCCCCCCcccCCccchhcccccc
Q 007949           90 AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEA-RPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        90 a~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~~-~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      .+.+..+..|+| +|+++.  +.+++++|+..+. .++.  ++..|.||||+||..++
T Consensus       129 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~--~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         129 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW--QDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCC--CCTTSCCHHHHHHHTTC
T ss_pred             ccccccCCCCCCccchhhhcccccccccccccccccccc--cccccCCchhhhccccc
Confidence            777777777776 455555  6667777776653 3333  56667777777776666

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.32  E-value=2.3e-14  Score=143.87  Aligned_cols=103  Identities=16%  Similarity=0.032  Sum_probs=85.7

Q ss_pred             hcc-cCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCChhHHHHHHHhCCHHHHHHHHhc
Q 007949           12 ELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD--QWDSVALYYACLAGHLDAARMLLES   88 (583)
Q Consensus        12 ~~~-~~din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~   88 (583)
                      .+. |+++|.+|..|+||        ||+||..||.++|++|++.|++++..+  ..|+||||+|+..||.+++++|++.
T Consensus       112 L~~~~~~in~~~~~g~ta--------L~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~  183 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQA--------FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL  183 (346)
T ss_dssp             C--CCSSCC--CHHHHHH--------HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHhCCCcccccCCCCCCH--------HHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHc
Confidence            344 89999999999999        899999999999999999999998876  4699999999999999999999999


Q ss_pred             CCCcC---ccCCCCchHHHHHh---hHHHHHHHHhCCCCC
Q 007949           89 GAICS---EHTFDGDRCHYAAL---NLKVRKLLKAYEARP  122 (583)
Q Consensus        89 ga~~~---~~~~~g~t~~~aa~---~~~i~~~L~~~~~~~  122 (583)
                      |++..   ..+.+|.|||++|.   +.+++++|++.|+++
T Consensus       184 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            98754   33455567877664   799999999988654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.8e-12  Score=118.67  Aligned_cols=114  Identities=22%  Similarity=0.232  Sum_probs=97.0

Q ss_pred             chhhhcc-cCCCCCCCCCCCCCCC-------------------------------CCCcHHHHHHHHcCCHHHHHHHHHc
Q 007949            8 TIDAELD-EIDLDASDFSSSVPLK-------------------------------KVPNGDVFEASRAGDVDRLRYILES   55 (583)
Q Consensus         8 ~~~~~~~-~~din~~d~~g~tpl~-------------------------------~~~~~~L~~A~~~g~~~~v~~Ll~~   55 (583)
                      ++...++ |++++.+|..|+|||+                               ..+.++||.|+..|+.+.+++++..
T Consensus        54 iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  133 (221)
T d1iknd_          54 IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  133 (221)
T ss_dssp             HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc
Confidence            4444555 7888888888988874                               1356779999999999999999999


Q ss_pred             CCCCCccC-CCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchH-HHHHh--hHHHHHHHHhCCCC
Q 007949           56 GVNVNARD-QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYAAL--NLKVRKLLKAYEAR  121 (583)
Q Consensus        56 g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-~~aa~--~~~i~~~L~~~~~~  121 (583)
                      |+.++.++ ..|+||||+|+..|+.+++++|+++|+|++.+|..|.|| |+|+.  +.+++++|.+.+.+
T Consensus       134 ~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99888766 579999999999999999999999999999999999995 66555  89999999988765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-11  Score=118.37  Aligned_cols=113  Identities=20%  Similarity=0.192  Sum_probs=75.8

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCChhHHHHHHHhC----CHHHHHHHHhcCCCcCcc
Q 007949           21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAG----HLDAARMLLESGAICSEH   95 (583)
Q Consensus        21 ~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~~~~   95 (583)
                      .+..|.||        ||+|+..|+.+++++|++ .|++++..+..|.++++.+...+    ...++++|+++|++++.+
T Consensus       144 ~~~~g~t~--------L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~  215 (285)
T d1wdya_         144 LRKGGATA--------LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  215 (285)
T ss_dssp             TTCCCCCH--------HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred             hcccCchH--------HHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc
Confidence            34566777        677777777777777776 46777777777776666544332    345677777777777777


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHh-CCCCCCCCCCcccCCccchhcccccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~-~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..|.| +|+++.  +.+++++|+. .|++++.  ++..|.||||+|++.++
T Consensus       216 ~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~--~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEIND--TDSDGKTALLLAVELKL  265 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             CCCCCCccchhhhcCcHHHHHHHHHcCCCCCcC--CCCCCCCHHHHHHHcCC
Confidence            777776 455555  6777777765 3666655  56677777777777666

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.7e-11  Score=115.96  Aligned_cols=81  Identities=23%  Similarity=0.206  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHcCCCCCccCCCChhHHHHHHHhCCHHHHHHHHhc-CCCcCccCCCCch-HHHHHh--hHHHHHHHHhCC
Q 007949           44 GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE  119 (583)
Q Consensus        44 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t-~~~aa~--~~~i~~~L~~~~  119 (583)
                      +...++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|.| +|+|+.  +.+++++|+++|
T Consensus       197 ~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            345789999999999999999999999999999999999999975 8999999999999 577777  899999999999


Q ss_pred             CCCCC
Q 007949          120 ARPPP  124 (583)
Q Consensus       120 ~~~~~  124 (583)
                      ++++.
T Consensus       277 Ad~n~  281 (285)
T d1wdya_         277 ASTDC  281 (285)
T ss_dssp             SCSCC
T ss_pred             CCCCc
Confidence            99887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=3.1e-10  Score=110.78  Aligned_cols=47  Identities=26%  Similarity=0.251  Sum_probs=43.8

Q ss_pred             CCccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCccCCCCchH-HHH
Q 007949           59 VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRC-HYA  105 (583)
Q Consensus        59 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-~~a  105 (583)
                      +|.+|..|+||||+|+..|+.+++++|+++||+++..|..|.|| ++|
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            68889999999999999999999999999999999999999996 554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.4e-10  Score=101.59  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=100.0

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCChhHHHHHHHhCCHHHHHHHHhcCCCcCcc
Q 007949           17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNV-NARDQWDSVALYYACLAGHLDAARMLLESGAICSEH   95 (583)
Q Consensus        17 din~~d~~g~tpl~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   95 (583)
                      ..+.....+.+|        ++.+.........+.|.....+. ...+..|.++++.|+..+...+++.++.+|.+++.+
T Consensus       102 ~~~~~~~~~~~~--------l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  173 (228)
T d1k1aa_         102 DLEARNYDGLTA--------LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ  173 (228)
T ss_dssp             CTTCCCTTSCCH--------HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB
T ss_pred             cccccccccccc--------cccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            345555566677        79999999999999998877664 345568999999999999999999999999999999


Q ss_pred             CCCCch-HHHHHh--hHHHHHHHHhCCCCCCCCCCcccCCccchhcccccc
Q 007949           96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR  143 (583)
Q Consensus        96 ~~~g~t-~~~aa~--~~~i~~~L~~~~~~~~~~~~~~~~~t~L~~A~~~~~  143 (583)
                      +..|.| +|+|+.  +.+++++|+++|++++.  ++..|.||||+|+..++
T Consensus       174 d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~--~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSL--KNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCTTTTCSSHHH
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHhCCC
Confidence            999998 577777  89999999999999887  78999999999998776

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00048  Score=53.15  Aligned_cols=77  Identities=23%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcC-----C---CCC--CCC
Q 007949          350 DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT-----D---GLK--DID  419 (583)
Q Consensus       350 ~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt-----~---~~~--~i~  419 (583)
                      +|..|.+.+.+ |..|..++.|+...+.+.|+       ....|.+++|+..+++.+++|++-     +   .++  +++
T Consensus         9 Dg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~-------~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~   80 (96)
T d2c9wc1           9 DGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   80 (96)
T ss_dssp             TCCEEEEEHHH-HTTSHHHHHC-------------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCC
T ss_pred             CCCEEEeeHHH-HHHhHHHHHHHhccCccccC-------CCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCC
Confidence            67889998888 68999999999763333333       346799999999999999999952     1   111  466


Q ss_pred             HHhHHHHHHHHhccC
Q 007949          420 PDQAEEMFDAASRYL  434 (583)
Q Consensus       420 ~~~~~~ll~~A~~~~  434 (583)
                      .+.+.+|+.+|+++.
T Consensus        81 ~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          81 PEIALELLMAANFLD   95 (96)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhc
Confidence            788899999999875

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.0021  Score=49.76  Aligned_cols=79  Identities=24%  Similarity=0.297  Sum_probs=61.7

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCC----------
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD----------  413 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~----------  413 (583)
                      |++.. +|..|.+.+.+ |..|..++.|+..  .+.|+        ...|.+++++..+++.+++|++-.          
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~--~~~e~--------~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~   74 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG--PFRES--------KGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDD   74 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS--STTTC--------TTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHc--cCCCC--------cCccccCCCChHHHHHHHHHHHHhhhCcCccccc
Confidence            55555 67889998888 6789999999986  44333        246999999999999999999621          


Q ss_pred             ----CCCCCCHHhHHHHHHHHhccCc
Q 007949          414 ----GLKDIDPDQAEEMFDAASRYLL  435 (583)
Q Consensus       414 ----~~~~i~~~~~~~ll~~A~~~~~  435 (583)
                          .. +++.+.+.+|+.+|+++++
T Consensus        75 ~~~~ef-dvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          75 DEIPEF-EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCC-CCCHHHHHHHHHHHhhhCC
Confidence                23 4567789999999998864

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0025  Score=48.94  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCC--CCCCcccEEEcCCCCHHHHHHHhhhhcC-----C------cccCCh
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETD--WRYRNEIRFSREKLSYPALYGLIHFFYS-----D------RLEIAV  238 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~--~~e~~~~~i~l~~v~~~~~~~lL~ylYt-----g------~~~i~~  238 (583)
                      |+++. +|..|.+.+.+ |..|..++.||.+.  ..+.....|++++|+..+++.+++|++-     +      +..++.
T Consensus         3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~   81 (96)
T d2c9wc1           3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   81 (96)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCH
Confidence            34443 67889999988 78999999999753  3455567899999999999999999962     1      245677


Q ss_pred             hhHHHHHHHHhHhc
Q 007949          239 DDMEDLVKICKVCK  252 (583)
Q Consensus       239 ~~~~~ll~~a~~~~  252 (583)
                      +.+.+++.+|..++
T Consensus        82 ~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          82 EIALELLMAANFLD   95 (96)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhc
Confidence            77888888887653

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.0084  Score=46.15  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcC--------------CcccCC
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS--------------DRLEIA  237 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYt--------------g~~~i~  237 (583)
                      |+++. +|..|.+.+.+ +..|..++.|+.+...+. ...|++++|+..+++.+++|++-              .+.+++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd   83 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCC
Confidence            45555 67899999998 668999999998765544 45699999999999999999972              124556


Q ss_pred             hhhHHHHHHHHhHh
Q 007949          238 VDDMEDLVKICKVC  251 (583)
Q Consensus       238 ~~~~~~ll~~a~~~  251 (583)
                      ...+.+++.+|..+
T Consensus        84 ~~~l~eLi~AAnyL   97 (99)
T d1hv2a_          84 TEMSLELLLAADYL   97 (99)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            66677888887655

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.87  E-value=0.0079  Score=46.79  Aligned_cols=80  Identities=8%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             EEEEECCEeEehhHHHHhhccH-HHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhh-HHHHHHHHhH
Q 007949          173 VVFYVQGRPIEAHRVILSARSV-FFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDD-MEDLVKICKV  250 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~S~-~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~-~~~ll~~a~~  250 (583)
                      |++.|||..|...+..|..... ++..++...+.......+-+ +=+|..|..||+|+.+|.+.++++. ...++.-|+.
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~Fi-DRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~f   80 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF   80 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEE-eCCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHH
Confidence            6788999999999999976533 44444444443344455655 4689999999999999998777653 4555555665


Q ss_pred             hch
Q 007949          251 CKC  253 (583)
Q Consensus       251 ~~~  253 (583)
                      +++
T Consensus        81 ygi   83 (105)
T d1nn7a_          81 FGL   83 (105)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            554

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=94.23  E-value=0.011  Score=45.75  Aligned_cols=80  Identities=14%  Similarity=0.035  Sum_probs=56.6

Q ss_pred             EEEEECCEeEehhHHHHhhcc-HHHHHhhcCCCC-CCcccEEEcCCCCHHHHHHHhhhhcCCcccCChhh-HHHHHHHHh
Q 007949          173 VVFYVQGRPIEAHRVILSARS-VFFRRKFETDWR-YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDD-MEDLVKICK  249 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~S-~~f~~~~~~~~~-e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~-~~~ll~~a~  249 (583)
                      |++.|||..|...+..|.... .+|..++...+. ......+-+ +=+|..|..||.|+-+|.+.++.+. +..++.-|+
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~   82 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE   82 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHHH
Confidence            678899999999999997643 355556554332 123345555 6899999999999999998877653 445555565


Q ss_pred             Hhch
Q 007949          250 VCKC  253 (583)
Q Consensus       250 ~~~~  253 (583)
                      .+++
T Consensus        83 yygi   86 (103)
T d3kvta_          83 FWGL   86 (103)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            5554

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.01  E-value=0.007  Score=47.13  Aligned_cols=91  Identities=12%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             EEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCH-Hh
Q 007949          345 VCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDP-DQ  422 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~-~~  422 (583)
                      |++-|+|+.|...+..|.... .++..++..  .+....       ...+-+. =++..|+.+|.|+.+|.+ .++. ..
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~--~~~~~~-------~~~~FiD-Rdp~~F~~IL~ylR~G~l-~~p~~~~   70 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERD--FFYHPE-------TQQYFFD-RDPDIFRHILNFYRTGKL-HYPRHEC   70 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGG--GGEEGG-------GTEEEEC-SCTTTHHHHHHHHHHSCB-CCCTTSC
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccc--cCcCCC-------CCcEEEe-CCHHHHHHHHHHHhcCcc-ccCCCcc
Confidence            678899999999999886543 344444443  332221       1234444 488999999999999998 3443 34


Q ss_pred             HHHHHHHHhccCchHH--HHHHHHHH
Q 007949          423 AEEMFDAASRYLLFPL--KRAVADVL  446 (583)
Q Consensus       423 ~~~ll~~A~~~~~~~l--~~~c~~~l  446 (583)
                      ...++..|++|+++++  ...|...+
T Consensus        71 ~~~l~~Ea~fygi~~~~l~~cc~~~~   96 (105)
T d1nn7a_          71 ISAYDEELAFFGLIPEIIGDCCYEEY   96 (105)
T ss_dssp             HHHHHHHHHHHTCCSCCBCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6678888999999763  24455444

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=94.01  E-value=0.0042  Score=48.28  Aligned_cols=89  Identities=13%  Similarity=0.077  Sum_probs=61.7

Q ss_pred             EEEEECCEEEEeeeeeeeccC-HHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCCCCCCHH-h
Q 007949          345 VCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPD-Q  422 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~~S-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~i~~~-~  422 (583)
                      |++-|+|+.|...+..|.... .+|..+++....+.+        ....+-+ +=+|..|+.+|.|+.+|.+ .++.+ .
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~--------~~~~~fi-DRdp~~F~~IL~ylR~g~l-~~p~~~~   73 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDP--------VLNEYFF-DRHPGVFAQIINYYRSGKL-HYPTDVC   73 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEET--------TTTEEEE-CSCTTTHHHHHHHHHHSCB-CCCSSSC
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCC--------CCCcEEe-cCCHHHHHHHHHHHccCCc-ccccccC
Confidence            788999999999999986543 456555554211111        1234444 4689999999999999998 44433 4


Q ss_pred             HHHHHHHHhccCchH-HHHHHH
Q 007949          423 AEEMFDAASRYLLFP-LKRAVA  443 (583)
Q Consensus       423 ~~~ll~~A~~~~~~~-l~~~c~  443 (583)
                      ...++..|++|+++. +.+.|+
T Consensus        74 ~~~l~~Ea~yygi~~~~l~~Cc   95 (103)
T d3kvta_          74 GPLFEEELEFWGLDSNQVEPCC   95 (103)
T ss_dssp             HHHHHHHHHHHTCCGGGBCGGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHh
Confidence            667888899999964 455554

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.1  Score=34.69  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=37.1

Q ss_pred             CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHH
Q 007949          417 DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCH  460 (583)
Q Consensus       417 ~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~  460 (583)
                      .+....+.+|+.+|+++.+++|.+.|++.+...+...+++.+-.
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~   52 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRK   52 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            35677899999999999999999999999999987666665543

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.89  E-value=0.14  Score=36.33  Aligned_cols=58  Identities=16%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCC----CCCcccEEEcCCCCHHHHHHHhhhhcC
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDW----RYRNEIRFSREKLSYPALYGLIHFFYS  231 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~----~e~~~~~i~l~~v~~~~~~~lL~ylYt  231 (583)
                      |+++. +|..|.+-+. .+..|...+.|+....    .+.....|++++|+..+++.+++|++-
T Consensus         3 I~L~SsDg~~F~v~~~-~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2           3 VVLVSGEGERFTVDKK-IAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             EEEECTTSCEEEEEHH-HHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEecHH-HHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHH
Confidence            55664 6788888887 4679999999997432    223445799999999999999999975

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=91.58  E-value=0.068  Score=40.80  Aligned_cols=83  Identities=12%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             EEEEECCEEEEeeeeeeecc-CHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCC-CCCCCCH-H
Q 007949          345 VCVRVDKKIFRCHQVVLASR-SEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD-GLKDIDP-D  421 (583)
Q Consensus       345 v~~~~~~~~~~ahr~iL~~~-S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~-~~~~i~~-~  421 (583)
                      |.+-|+|+.|...+..|... +.++..|++.. .+...       ....+-+. =+|..|+.+|.|+.++ .+ ..+. .
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~-~~~~~-------~~g~~FiD-Rdp~~F~~IL~flR~~~~l-~~~~~~   72 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRN-RYYDP-------LRNEYFFD-RNRPSFDAILYFYQSGGRL-RRPVNV   72 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHG-GGEET-------TTTEEEEC-SCSTTHHHHHHHHHTTSCC-CCCTTS
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCC-CcCCC-------CCCeEEEe-cCHHHHHHHHHHHhcCCCc-CCCCcc
Confidence            77889999999999888763 55777777641 22111       12345554 4889999999999985 44 3333 3


Q ss_pred             hHHHHHHHHhccCchH
Q 007949          422 QAEEMFDAASRYLLFP  437 (583)
Q Consensus       422 ~~~~ll~~A~~~~~~~  437 (583)
                      ....++..|++|++++
T Consensus        73 ~~~~l~~Ea~y~gi~~   88 (100)
T d1t1da_          73 PLDVFSEEIKFYELGE   88 (100)
T ss_dssp             CHHHHHHHHHHTTCCH
T ss_pred             cHHHHHHHHHHcCCCH
Confidence            4677888899999976

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.11  Score=35.46  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             EEEEE-CCEeEehhHHHHhhccHHHHHhhcCCCCCCcccEEEcCCCCHHHHHHHhhhhcC
Q 007949          173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS  231 (583)
Q Consensus       173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~~~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYt  231 (583)
                      |+|+. +|..|.+-+. .+..|..++.|+.+.-    ...|++++|+..+++.+++|++-
T Consensus         3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~~----~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHH-HHHHhHHHHHHHhcCC----CCCcccCCcCHHHHHHHHHHHHH
Confidence            44554 6678888777 5688999999997532    23599999999999999999974

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=90.82  E-value=0.073  Score=40.59  Aligned_cols=81  Identities=16%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             EEEEECCEeEehhHHHHhhc-cHHHHHhhcCCCC-CCcccEEEcCCCCHHHHHHHhhhhcCC-cccCChh-hHHHHHHHH
Q 007949          173 VVFYVQGRPIEAHRVILSAR-SVFFRRKFETDWR-YRNEIRFSREKLSYPALYGLIHFFYSD-RLEIAVD-DMEDLVKIC  248 (583)
Q Consensus       173 v~~~v~~~~~~~Hk~iL~a~-S~~f~~~~~~~~~-e~~~~~i~l~~v~~~~~~~lL~ylYtg-~~~i~~~-~~~~ll~~a  248 (583)
                      |++.|||+.|...+..|... +.+|..++...+. ......+-+ +=+|..|+.||+|+-+| .+..+.+ ....++.-|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea   81 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE-ecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHH
Confidence            67889999999999999774 4566666653322 233345666 46999999999999985 5444433 245566666


Q ss_pred             hHhchH
Q 007949          249 KVCKCE  254 (583)
Q Consensus       249 ~~~~~~  254 (583)
                      +.++++
T Consensus        82 ~y~gi~   87 (100)
T d1t1da_          82 KFYELG   87 (100)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            666543

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.73  E-value=0.25  Score=34.57  Aligned_cols=48  Identities=23%  Similarity=0.206  Sum_probs=39.5

Q ss_pred             CCCHHhHHHHHHHHhccCchHHHHHHHHHHHhhcccCChhhHHHHHHH
Q 007949          417 DIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLIL  464 (583)
Q Consensus       417 ~i~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~n~~~~l~~  464 (583)
                      .+....+.+|+.+|+++.+++|...|++.+...+...+++.+-.++.+
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I   57 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNI   57 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCC
Confidence            356788999999999999999999999999999876677766555543

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.52  E-value=0.14  Score=36.32  Aligned_cols=65  Identities=20%  Similarity=0.208  Sum_probs=43.7

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCCCC
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGL  415 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~  415 (583)
                      |++.. +|..|.+-+.+ |..|...+.|+...+...+.     +.....|.+++|+..+++.+++|++-..-
T Consensus         3 I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~-----~~~~~~Ipl~~V~s~iL~kVieyc~~H~~   68 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDE-----DDDEIVMPVPNVRSSVLQKVIEWAEHHRD   68 (72)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHTC------------------CEEECTTCCHHHHHHHHHHHHHTTT
T ss_pred             eEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCccccc-----cCCCCcccCCCcCHHHHHHHHHHHHHccC
Confidence            55554 67889998886 58999999999853111111     11234699999999999999999986653

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.24  Score=33.69  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             EEEEE-CCEEEEeeeeeeeccCHHHHHHHcCccccccCCCCCCCCCCCeeecCCCCHHHHHHHhhhhcCC
Q 007949          345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD  413 (583)
Q Consensus       345 v~~~~-~~~~~~ahr~iL~~~S~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~  413 (583)
                      |++.. +|..|.+-+.+ +..|..++.|+...             ....|.+++|+..+++.+++|++-.
T Consensus         3 I~L~SsDg~~f~v~~~~-a~~S~tI~~ml~~~-------------~~~~Ipl~~V~s~iL~kVieyc~~H   58 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-------------GMDPVPLPNVNAAILKKVIQWCTHH   58 (61)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT-------------CCSSEECTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHHH-HHHhHHHHHHHhcC-------------CCCCcccCCcCHHHHHHHHHHHHHc
Confidence            34444 67889988886 58999999999852             1235999999999999999999754