Citrus Sinensis ID: 007952
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YS4 | 751 | ABC transporter G family | yes | no | 0.993 | 0.770 | 0.797 | 0.0 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.987 | 0.781 | 0.739 | 0.0 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.951 | 0.856 | 0.500 | 1e-161 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.941 | 0.860 | 0.499 | 1e-157 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.958 | 0.816 | 0.472 | 1e-157 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.945 | 0.832 | 0.462 | 1e-149 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.945 | 0.819 | 0.467 | 1e-148 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | yes | no | 0.929 | 0.827 | 0.335 | 1e-82 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.869 | 0.774 | 0.353 | 4e-81 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.871 | 0.773 | 0.345 | 4e-81 |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/579 (79%), Positives = 521/579 (89%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+TSS EK+IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PY
Sbjct: 171 LTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPY 230
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKSKIGFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERC
Sbjct: 231 SKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERC 290
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGG+FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAE
Sbjct: 291 QDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAE 350
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTV+TTIHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEF
Sbjct: 351 AGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEF 410
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKK
Sbjct: 411 LLDLANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKK 470
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
L+ P+PLDEE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVI
Sbjct: 471 LLDPVPLDEEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVI 530
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD ++P GL+DQAGLLFFIAVFW FFP+FTAIF FPQERAML+KERAADMYRL
Sbjct: 531 LGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRL 590
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+ +LP LFL++VYFM GLR+ PFFLSMLTVFL I+AAQGLGLAI
Sbjct: 591 SAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAI 650
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GAILMDLKKATTLASVT+MTFMLAGG+FV++VPVFISWIRY+SFN+HTYK+LLK+QY D
Sbjct: 651 GAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDF 710
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKL 579
+ +NGMR D+G EV ALV M+FGYRLLAYLSLR+MK+
Sbjct: 711 AVSINGMRIDNGLTEVAALVVMIFGYRLLAYLSLRQMKI 749
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/580 (73%), Positives = 499/580 (86%), Gaps = 4/580 (0%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
MTSS EK ILNGI+GS PGE+LALMGPSGSGKTTLLN L GR + +GGS++YND PY
Sbjct: 159 MTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPY 218
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LK++IGFVTQDDVLFPHLTVKETLTY ALLRLP TLT+Q+KE+RA VI ELGLERC
Sbjct: 219 SKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERC 278
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRVCIGNEI+ NPSLL LDEPTS LDSTTAL+IVQML IA+
Sbjct: 279 QDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAK 338
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKT+VTTIHQPSSRLFH+FDKL++L +GSLLYFGKASEAM+YFSSIGCSP +AMNPAEF
Sbjct: 339 AGKTIVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEF 398
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDL NGN++D+SVPS L+++++ E N K + +YL EAY+T++A EK K
Sbjct: 399 LLDLVNGNMNDISVPSALKEKMKIIRLELYVRNVKCD--VETQYLEEAYKTQIAVMEKMK 456
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LMAP+PLDEE+K ++ PKR WG SW +QY +L RGIKE RHDYFSWLR+TQVL+TA+I
Sbjct: 457 LMAPVPLDEEVKLMITCPKREWGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAII 516
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD S + ++GLLFFIAVFW FFP+FTAIFTFPQERAMLSKER ++MYRL
Sbjct: 517 LGLLWWQSDITSQR--PTRSGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRL 574
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYF+ARTTSDLPL+L+LPVLFLV+VYFMAGLR+ A FFLS+LTVFL IVAAQGLGLAI
Sbjct: 575 SAYFVARTTSDLPLDLILPVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAI 634
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLKKATTLASVT+MTFMLAGGYFV++VP FI+WIR+MSFN+HTYK+L+K+QY +I
Sbjct: 635 GASLMDLKKATTLASVTVMTFMLAGGYFVKKVPFFIAWIRFMSFNYHTYKLLVKVQYEEI 694
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580
VNG +SG +EV ALVAM+ GYRL+AY SLR+MKLH
Sbjct: 695 MESVNGEEIESGLKEVSALVAMIIGYRLVAYFSLRRMKLH 734
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 298/595 (50%), Positives = 405/595 (68%), Gaps = 40/595 (6%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
S+EK ILNGITG V PGE LA++GPSGSGKTTLL+ L GRL + T G + YN P+S
Sbjct: 76 SKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPFSGC 134
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+K + GFV QDDVL+PHLTV ETL + ALLRLP++LT+ +K + VI ELGL RC ++
Sbjct: 135 IKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNS 194
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
MIGG RG+SGGE+KRV IG E++INPSLL LDEPTSGLDSTTA RIV ++ +A G+
Sbjct: 195 MIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGR 254
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 243
TVVTTIHQPSSR++H FDK++LL +GS +Y+G AS A+ YFSS+G S + +NPA+ LLD
Sbjct: 255 TVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLD 314
Query: 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLM- 302
LANG +P + Q E SE + V E LV AYE ++ K +L
Sbjct: 315 LANG------IPPD----TQKETSEQEQKT-------VKETLVSAYEKNISTKLKAELCN 357
Query: 303 APIPLDEEIKAKVSSPK-RNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVIL 361
A E KA + K W +W Q+T+L +RG++E R + F+ LRI QV++ A +
Sbjct: 358 AESHSYEYTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLG 417
Query: 362 GLLWWQSDSKSPKG-LEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
GLLWW +PK ++D+ LLFF +VFW F+P++ A+FTFPQE+ ML KER++ MYRL
Sbjct: 418 GLLWWH----TPKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRL 473
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
S+YF+AR DLPL L LP F+ I+Y+M GL+ F LS+L V S++ AQGLGLA
Sbjct: 474 SSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAF 533
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA+LM++K+ATTLASVT + F++AGGY+VQ++P FI W++Y+S++++ YK+LL IQY D
Sbjct: 534 GALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDD 593
Query: 541 S---------------PIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580
P + M ++ + +V + M+ GYRL+AY++L ++KL
Sbjct: 594 DYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVKLR 648
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 298/597 (49%), Positives = 406/597 (68%), Gaps = 48/597 (8%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS 61
+EE+ IL G+TG V PGE+LA++GPSGSGKT+LL L GR+ E + G+I+YN+ P S
Sbjct: 61 TEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLS 120
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K++K GFVTQDD L+P+LTV ETL + ALLRLPN+ KQ+K K+A V+ ELGL+RC+
Sbjct: 121 KAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCK 180
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
DT+IGG F+RGVSGGERKRV IG EI+INPSLLFLDEPTSGLDSTTA RIV +L ++A
Sbjct: 181 DTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARG 240
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA-MNPAEF 240
G+TVVTTIHQPSSRLF+ FDKL+LL +G+ +YFG S AM YF+S+G SP + +NP++F
Sbjct: 241 GRTVVTTIHQPSSRLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDF 300
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE---NE 297
LLD+ANG V ++ S+ P + LV Y+T + + NE
Sbjct: 301 LLDIANG--------------VGSDESQR--------PEAMKAALVAFYKTNLLDSVINE 338
Query: 298 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLAT 357
K E ++ +W +W QQ+ +L +RG+K+ RHD FS +++ Q+
Sbjct: 339 VKGQDDLCNKPRESSRVATNTYGDWPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIV 398
Query: 358 AVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADM 417
+ + GLLWWQ+ L+DQ GLLFFI+ FW+FFP+F IFTFPQERAML KER++ M
Sbjct: 399 SFLCGLLWWQTKISR---LQDQIGLLFFISSFWAFFPLFQQIFTFPQERAMLQKERSSGM 455
Query: 418 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477
YRLS YFL+R DLP+ L+LP FLVI Y+MAGL FF+++L + + ++ + GLG
Sbjct: 456 YRLSPYFLSRVVGDLPMELILPTCFLVITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLG 515
Query: 478 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQY 537
LA+GA++MD K ATTL SV ++TF+LAGGY+VQ VPVFISWI+Y+S ++TYK+L+ QY
Sbjct: 516 LALGALVMDQKSATTLGSVIMLTFLLAGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQY 575
Query: 538 A--DISPI---------------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKM 577
++ P + + +SG AL AM+ YR++AY++L ++
Sbjct: 576 TANELYPCGDNGKLRCHVGDFEGIKHIGFNSGLVSALALTAMLVVYRVIAYIALTRI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/586 (47%), Positives = 395/586 (67%), Gaps = 27/586 (4%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
K IL GITGS PGE+LALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K
Sbjct: 104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKR 162
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+IGFVTQDDVL P LTV+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +G
Sbjct: 163 RIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVG 222
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
G FV+G+SGGERKR I EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+
Sbjct: 223 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 282
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLAN 246
TTIHQPSSR+FH FDKL+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA
Sbjct: 283 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 342
Query: 247 GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIP 306
G + D+S+P EL + + ++ D+ ++ +YL + Y+T + EK++
Sbjct: 343 GQVSDISLPDEL---LAAKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRK 393
Query: 307 LDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 366
E ++ + K++W SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW
Sbjct: 394 APEHLQIAIQV-KKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWW 452
Query: 367 QSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLA 426
+S + + L DQ GL+F+I +FW+ +F A++ FP E+ L KER A+MYRLS Y++
Sbjct: 453 KSKTDTEAHLRDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVC 512
Query: 427 RTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMD 486
T D+ +++ P F++IVYFMA F ++LT+ L + +QG G +GA ++
Sbjct: 513 STLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLS 572
Query: 487 LKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYA-------- 538
+K+A +AS+ +M F+L GGY+VQ +P F+ W++Y+SF + +++LLK+QY+
Sbjct: 573 IKRAGMIASLVLMLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECG 632
Query: 539 --------DISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRK 576
S + + + G +E+ L+AM FGYRL AY LRK
Sbjct: 633 SKGGCRTLQSSSSFDTINLNGGLQELWVLLAMAFGYRLCAYFCLRK 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/610 (46%), Positives = 390/610 (63%), Gaps = 59/610 (9%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S+EE+ IL+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K
Sbjct: 77 STEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITK 136
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ GFV QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++
Sbjct: 137 QTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCEN 196
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
T++G +F+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A
Sbjct: 197 TVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGK 256
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
GKTVVT+IHQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FL
Sbjct: 257 GKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFL 316
Query: 242 LDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 301
LDLANG ++ T KP V + LV AY+T +A K +
Sbjct: 317 LDLANGVCQ----------------TDGVTEREKPN---VRQTLVTAYDTLLAPQVKTCI 357
Query: 302 -MAPIPLDEEIKAKVSSPKRNWG------ASWIQQYTILFRRGIKEHRHDYFSWLRITQV 354
++ P D A+ + N G A+W Q IL R +KE RH+ F LRI QV
Sbjct: 358 EVSHFPQD---NARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQV 414
Query: 355 LATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERA 414
+A +++ GL+WW SD + + D+ GLLFFI++FW P F A+FTFPQERA+ ++ERA
Sbjct: 415 VAASILCGLMWWHSDYRD---VHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERA 471
Query: 415 ADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQ 474
+ MY LS+YF+A L + LVLP FL Y+M LR G PF L++ + L ++A+Q
Sbjct: 472 SGMYTLSSYFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQ 531
Query: 475 GLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLK 534
GLGLA+GA +MD KKA+T+ +VT++ F+L GGY+V +VP + W++Y+S F+ Y++L+
Sbjct: 532 GLGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVA 591
Query: 535 IQYADISPIVNGMRTDS------------GFR--------------EVCALVAMVFGYRL 568
IQY I+ + DS G R V L M FGYR+
Sbjct: 592 IQYGSGEEILRMLGCDSKGKQGASAATSAGCRFVEEEVIGDVGMWTSVGVLFLMFFGYRV 651
Query: 569 LAYLSLRKMK 578
LAYL+LR++K
Sbjct: 652 LAYLALRRIK 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/592 (46%), Positives = 401/592 (67%), Gaps = 41/592 (6%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L ++G V PGE+LA++GPSGSGKTTL+ L+GRL + + G+++YN P++ S+K K
Sbjct: 99 VLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSVKRKT 157
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
GFVTQDDVL+PHLTV ETLTY ALLRLP LT+++K ++ V+++LGL RC +++IGG
Sbjct: 158 GFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGG 217
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 188
+RG+SGGERKRV IG E+++NPSLL LDEPTSGLDSTTA RIV L+ +A G+TVVTT
Sbjct: 218 LIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTT 277
Query: 189 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA-MNPAEFLLDLANG 247
IHQPSSRL+ FDK+++L +G +Y G + M YF SIG P + +NPA+F+LDLANG
Sbjct: 278 IHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANG 337
Query: 248 NLHDVSVPSELQ-----DRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLM 302
D +++ DR++ +NS V + L+ +Y+ + K+++
Sbjct: 338 ITSDTKQYDQIETNGRLDRLEEQNS-------------VKQSLISSYKKNLYPPLKEEVS 384
Query: 303 APIPLDE-EIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVIL 361
P D+ + + + W SW Q+++L +RG+KE H+ FS LRI V++ +++
Sbjct: 385 RTFPQDQTNARLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLS 444
Query: 362 GLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLS 421
GLLWW S L+DQ GLLFF ++FW FFP+F AIFTFPQER ML KER++ +YRLS
Sbjct: 445 GLLWWHSRVAH---LQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLS 501
Query: 422 AYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG 481
+Y++ART DLP+ L+LP +F+ I Y+M GL+ F ++++ V +++ AQG+GLA+G
Sbjct: 502 SYYIARTVGDLPMELILPTIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALG 561
Query: 482 AILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYA--- 538
AILMD KKA TL+SV ++ F+LAGGY++Q +P FI+W++Y+SF+ + YK+L+ +QY
Sbjct: 562 AILMDAKKAATLSSVLMLVFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWDE 621
Query: 539 -------------DISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKM 577
D I N +R + +V AL M+ YR+LAYL+LR +
Sbjct: 622 VYECGSGLHCSVMDYEGIKN-LRIGNMMWDVLALAVMLLLYRVLAYLALRNL 672
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 188/560 (33%), Positives = 308/560 (55%), Gaps = 18/560 (3%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL I G + PG + A++GP+G GK++LL++L+ R + G + N P + K
Sbjct: 59 EKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFK 117
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRLP T+T +K +R VI ELGL++ D+ +
Sbjct: 118 CNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKV 177
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F+RGVSGGERKR I E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 178 GTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 237
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 245
+ +IHQP +F FD L LL G L++ G A EA+ YF +IG + NPA+F LD+
Sbjct: 238 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDII 297
Query: 246 NGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPI 305
NG+ V + E + E +E + + K TP I E L E Y E K +
Sbjct: 298 NGDSSAVVLNRE---DIGDEANETEEPSKKDTPLI--EKLAEFYVNSSFFKETKVELDKF 352
Query: 306 PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLAT---AVILG 362
D+ K S + + S+ Q + RR K + I Q++ T +++G
Sbjct: 353 SGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGN--PQASIAQLIVTVFLGLVIG 410
Query: 363 LLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSA 422
+++ + P G++++AG+LFF+ F + +A+ E+ + E + YR+S+
Sbjct: 411 AIFYDLKN-DPAGIQNRAGVLFFLTTNQCFSSV-SAVELLVVEKKLFIHEYISGYYRVSS 468
Query: 423 YFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG 481
YF + SD LP+ ++ ++F I YF+ GL+ FF+ MLT+ + +A + LAI
Sbjct: 469 YFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIA 528
Query: 482 AILMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMSFNFHTYKILLKIQY-- 537
A + AT L +++ + M+ G V + V ++SW++Y+S + Y L ++
Sbjct: 529 AGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAALQHNEFLG 588
Query: 538 ADISPIVNGMRTDSGFREVC 557
+ P +N ++ +C
Sbjct: 589 QNFCPGLNVTTNNTCSYAIC 608
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 185/524 (35%), Positives = 296/524 (56%), Gaps = 17/524 (3%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL+ I G + PG + A++GP+G GK++LL++L+ R + G + N P + K
Sbjct: 60 EKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANFK 118
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRL T+T +K +R VI ELGL++ D+ +
Sbjct: 119 CNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKV 178
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F+RGVSGGERKR IG E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 179 GTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 238
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 245
+ +IHQP +F FD L LL G L++ G A EA+ YF S G + NPA+F LD+
Sbjct: 239 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDII 298
Query: 246 NGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPI 305
NG+ V++ E +D TE E + KP + E L E Y E K + +
Sbjct: 299 NGDSTAVALNRE-EDFKATEIIE-PSKQDKP----LIEKLAEIYVNSSFYKETKAELHQL 352
Query: 306 PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAV---ILG 362
E+ K + ++ S+ Q + +R K + I Q++ T V ++G
Sbjct: 353 SGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGN--PQASIAQIIVTVVLGLVIG 410
Query: 363 LLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSA 422
+++ + S G++++AG+LFF+ F + +A+ F E+ + E + YR+S+
Sbjct: 411 AIYFGLKNDS-TGIQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYRVSS 468
Query: 423 YFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG 481
YFL + SD LP+ ++ ++F IVYFM GL+ A FF+ M T+ + +A + LAI
Sbjct: 469 YFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIA 528
Query: 482 AILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMS 523
A + AT L ++ + M+ G V + ++SW++Y S
Sbjct: 529 AGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFS 572
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 181/524 (34%), Positives = 292/524 (55%), Gaps = 16/524 (3%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL+ I G + PG + A++GP+G GK++LL++L+ R + G + N P K
Sbjct: 59 EKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKGLSGDVLINGAPQPAHFK 117
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRLP T+ +K +R +I ELGLE+ D+ +
Sbjct: 118 CCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKV 177
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 178 GTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 237
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 245
+ +IHQP +F FD L LL G L++ G A +A+ YF+S G + NPA+F LD+
Sbjct: 238 IFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVI 297
Query: 246 NGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPI 305
NG+ V + E QD + +E + KP V E L E Y E K + +
Sbjct: 298 NGDSSAVMLNREEQDN-EANKTEEPSKGEKP----VIENLSEFYINSAIYGETKAELDQL 352
Query: 306 PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE---HRHDYFSWLRITQVLATAVILG 362
P +E K + + + S+ Q + RR K + + L +T +L +I+G
Sbjct: 353 PGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVIL--GLIIG 410
Query: 363 LLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSA 422
+++ + G++++AG+LFF+ F + +A+ F E+ + E + YR+S+
Sbjct: 411 AIYFDLKYDA-AGMQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYRVSS 468
Query: 423 YFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG 481
YF + SD LP+ + V+F ++YFM GL+ FF+ M T+ + A + LAI
Sbjct: 469 YFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVDAFFIMMFTLIMVAYTASSMALAIA 528
Query: 482 AILMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMS 523
+ AT L ++ + ML G V + + ++SW++Y S
Sbjct: 529 TGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIGPWLSWLQYFS 572
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| 224138238 | 744 | white-brown-complex ABC transporter fami | 0.993 | 0.778 | 0.854 | 0.0 | |
| 356500545 | 743 | PREDICTED: ABC transporter G family memb | 1.0 | 0.784 | 0.847 | 0.0 | |
| 255566225 | 749 | ATP-binding cassette transporter, putati | 0.998 | 0.777 | 0.847 | 0.0 | |
| 356534584 | 738 | PREDICTED: ABC transporter G family memb | 1.0 | 0.789 | 0.842 | 0.0 | |
| 296089333 | 738 | unnamed protein product [Vitis vinifera] | 1.0 | 0.789 | 0.845 | 0.0 | |
| 356505453 | 740 | PREDICTED: ABC transporter G family memb | 0.998 | 0.786 | 0.812 | 0.0 | |
| 224091479 | 743 | white-brown-complex ABC transporter fami | 0.993 | 0.779 | 0.853 | 0.0 | |
| 449437512 | 749 | PREDICTED: ABC transporter G family memb | 0.991 | 0.771 | 0.823 | 0.0 | |
| 449501170 | 620 | PREDICTED: ABC transporter G family memb | 1.0 | 0.940 | 0.814 | 0.0 | |
| 356570916 | 736 | PREDICTED: ABC transporter G family memb | 0.998 | 0.790 | 0.814 | 0.0 |
| >gi|224138238|ref|XP_002322764.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867394|gb|EEF04525.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/579 (85%), Positives = 542/579 (93%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
MTS+EEKDIL GI+GSV+PGEVLALMGPSGSGKTTLLNL+ GRL + TVGGS+TYND PY
Sbjct: 164 MTSTEEKDILYGISGSVDPGEVLALMGPSGSGKTTLLNLIGGRLNQTTVGGSLTYNDQPY 223
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDDVLFPHLTVKETLTYAALLRLP TLTK+QK+KRAIDVI ELGLERC
Sbjct: 224 SKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLPKTLTKEQKQKRAIDVIYELGLERC 283
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+LQDIAE
Sbjct: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQLLQDIAE 343
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM YFSSIGC+P IAMNPAEF
Sbjct: 344 GGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMLYFSSIGCNPLIAMNPAEF 403
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++DVSVPSEL+D+VQ NSE +T NGKP+PA+VHEYLVEAYETRVA+ EKKK
Sbjct: 404 LLDLANGNINDVSVPSELEDKVQIGNSEAETRNGKPSPAVVHEYLVEAYETRVADKEKKK 463
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM PIPLDEE+K+KVSS KR WGASW +QYTILF RGIKE RHDYFSWLRITQVL+TA+I
Sbjct: 464 LMVPIPLDEEVKSKVSSRKRQWGASWWEQYTILFCRGIKERRHDYFSWLRITQVLSTAII 523
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWW+SDS SPKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 524 LGLLWWKSDSSSPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 583
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+L+LPVLFL++VYFMAGLR+ A PFFL+MLTVFL IVAAQGLGLAI
Sbjct: 584 SAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAAPFFLTMLTVFLCIVAAQGLGLAI 643
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGGYFV++VPVF+SWIRYMSFN+HTYK+LLK+QY +
Sbjct: 644 GATLMDLKRATTLASVTVMTFMLAGGYFVKKVPVFVSWIRYMSFNYHTYKLLLKVQYEHM 703
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKL 579
+P +NG+ D G EV ALVAMVFGYRLLAY+SLR+MKL
Sbjct: 704 TPAINGIGIDGGLTEVSALVAMVFGYRLLAYISLRRMKL 742
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500545|ref|XP_003519092.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/583 (84%), Positives = 537/583 (92%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
MT++EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PY
Sbjct: 161 MTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPY 220
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDDVLFPHLTVKETLTYAA LRLP T TK+QKEKRA+DVI ELGLERC
Sbjct: 221 SKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERC 280
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE
Sbjct: 281 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 340
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM YF SIGCSP I+MNPAEF
Sbjct: 341 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEF 400
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++DVS+PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+
Sbjct: 401 LLDLANGNINDVSLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAYETRVAETEKKR 460
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM PIP+DE +K KV S KR WGASW +QY+ILF RGIKE RHDYFSWLRITQVL+TAVI
Sbjct: 461 LMVPIPIDEALKTKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVI 520
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD+K+PK L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 521 LGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 580
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQGLGLAI
Sbjct: 581 SAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAI 640
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGG+FVQ VP+F SWIRYMSFN+HTYK+LLK+QY I
Sbjct: 641 GATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHI 700
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFGA 583
SP++NGMR DSG EV AL+AMVFGYR LAYLSLR+MKL GA
Sbjct: 701 SPVINGMRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 743
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566225|ref|XP_002524100.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536668|gb|EEF38310.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/582 (84%), Positives = 545/582 (93%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+ S+EEKDILNGI+GSV+PG+VLALMGPSGSGKT+LLNLLSGRL+ TVGG+ITYND PY
Sbjct: 166 IASTEEKDILNGISGSVDPGQVLALMGPSGSGKTSLLNLLSGRLIHQTVGGTITYNDQPY 225
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
K+LKS+IGFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QKEKRA+DVI ELGLERC
Sbjct: 226 CKNLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERC 285
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE
Sbjct: 286 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 345
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE M YFSSIGC+P IAMNPAEF
Sbjct: 346 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASETMPYFSSIGCNPLIAMNPAEF 405
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++DVSVPSEL+DRVQ NS+ DT NGKP+P++VHEYLVEAYETRVAE EKKK
Sbjct: 406 LLDLANGNINDVSVPSELEDRVQMGNSDIDTGNGKPSPSVVHEYLVEAYETRVAEMEKKK 465
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
+M PIPLDEE+K KV+SPKR WGASW QQ+TIL RGIKE RHDYFSWLRITQVL+TAVI
Sbjct: 466 IMVPIPLDEEVKLKVASPKRLWGASWWQQFTILLCRGIKERRHDYFSWLRITQVLSTAVI 525
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQS+S+S KGL+DQ+GLLFFIAVFW FFP+FTAIFTFPQERAML+KERAADMYRL
Sbjct: 526 LGLLWWQSNSRSLKGLQDQSGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRL 585
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+L+LPVLFL++VYFMAGLRM AGPFFLS+LTVFL IVAAQGLGLAI
Sbjct: 586 SAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRMSAGPFFLSLLTVFLCIVAAQGLGLAI 645
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLKKATTLASVT+MTFMLAGGYFV++VP+F++WIRY+SFN+HTYK+LLK+QY DI
Sbjct: 646 GATLMDLKKATTLASVTVMTFMLAGGYFVKKVPIFVAWIRYLSFNYHTYKLLLKVQYEDI 705
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFG 582
SP +NG+R +G EV ALVAMVFGYRLLAY+SLRKMK + G
Sbjct: 706 SPPINGIRIGNGVTEVSALVAMVFGYRLLAYISLRKMKFNCG 747
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534584|ref|XP_003535833.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/583 (84%), Positives = 535/583 (91%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
MT++EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PY
Sbjct: 156 MTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPY 215
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDDVLFPHLTVKETLTYAA LRLP TK+QKEKRA+DVI ELGLERC
Sbjct: 216 SKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKAYTKEQKEKRALDVIYELGLERC 275
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE
Sbjct: 276 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 335
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE M YF SIGCSP I+MNPAEF
Sbjct: 336 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASETMTYFQSIGCSPLISMNPAEF 395
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++DVS+PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+
Sbjct: 396 LLDLANGNINDVSLPSELEDKVQMGNAEAETQNGKPSPAVVHEYLVEAYETRVAETEKKR 455
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM PIPLDE +K KV S KR WGASW +Q++ILF RGIKE RHDYFSWLRITQVL+TAVI
Sbjct: 456 LMVPIPLDEALKTKVCSHKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAVI 515
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD+K+PK L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 516 LGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 575
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQGLGLAI
Sbjct: 576 SAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTVLTVFLCIVAAQGLGLAI 635
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGG+FVQ VP+F SWIRYMSFN+HTYK+LLK+QY I
Sbjct: 636 GATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHI 695
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFGA 583
SP++NG+R DSG EV AL+AMVFGYR LAYLSLR+MKL GA
Sbjct: 696 SPVINGIRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 738
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089333|emb|CBI39105.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/583 (84%), Positives = 542/583 (92%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
M ++ EK+ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL GRL +PT GGS+TYND PY
Sbjct: 156 MRTNVEKEILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLNQPTAGGSVTYNDQPY 215
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SKSLKSKIGFVTQDDVLFPHLTV+ETLTYAA LRLP TLTKQQKEKRA+DVI ELGL+RC
Sbjct: 216 SKSLKSKIGFVTQDDVLFPHLTVRETLTYAARLRLPKTLTKQQKEKRAVDVIYELGLDRC 275
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGERKRV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQML DIAE
Sbjct: 276 QDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAE 335
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTV+TTIHQPSSRLFHKFDKLILLGKG+LLYFGKAS M YFSSIGCSP I MNPAEF
Sbjct: 336 AGKTVLTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASGTMEYFSSIGCSPLITMNPAEF 395
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGNL+DVS+PSEL+D+VQTE+SE +T NGKP+PA VHEYLVEAYETRVA+ EKKK
Sbjct: 396 LLDLANGNLNDVSIPSELEDKVQTEHSETETRNGKPSPADVHEYLVEAYETRVADQEKKK 455
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM PIP+DEE+K+KV SPKR WGASW +QY+ILFRRG+KE RHDYFSWLR+TQV +TA I
Sbjct: 456 LMIPIPIDEELKSKVCSPKREWGASWWEQYSILFRRGLKERRHDYFSWLRVTQVASTATI 515
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQS+S +PKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 516 LGLLWWQSESTNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 575
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYF+ARTTSDLPL+L+LPVLFL+IVYFMAGLRM AG FFL+MLTVFL IVAAQGLGLAI
Sbjct: 576 SAYFVARTTSDLPLDLILPVLFLIIVYFMAGLRMDAGSFFLTMLTVFLCIVAAQGLGLAI 635
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGGYFV++VP+FISWIRY+SFN+HTYK+LLK+QY I
Sbjct: 636 GATLMDLKRATTLASVTVMTFMLAGGYFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHI 695
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFGA 583
+P VNGM+ D G +EV ALVAMVFGYRLLAY+SLR+MKLH GA
Sbjct: 696 TPNVNGMKIDGGLKEVSALVAMVFGYRLLAYISLRRMKLHTGA 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505453|ref|XP_003521505.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/582 (81%), Positives = 537/582 (92%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+T+++EKDIL GITGSVNPGEVLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PY
Sbjct: 158 ITTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQCTIGGSITYNDQPY 217
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDDVLFPHLTVKETLTYAALLRLPNTL K+QKEKRA++VI ELGLERC
Sbjct: 218 SKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLRKEQKEKRALEVIEELGLERC 277
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGS+VRG+SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE
Sbjct: 278 QDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 337
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEF
Sbjct: 338 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEF 397
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++D+SVPSEL+D+VQ N+E +T+NGKP+ ++V EYLVEAY++RVAE EK K
Sbjct: 398 LLDLANGNVNDISVPSELKDKVQMGNAEAETSNGKPSASVVQEYLVEAYDSRVAEIEKTK 457
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM P+PLDEE+K+KV S KR WGASW +Q++ILF RG +E RHDYFSWLRITQVLATAVI
Sbjct: 458 LMIPVPLDEELKSKVCSCKRQWGASWFEQFSILFSRGFRERRHDYFSWLRITQVLATAVI 517
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD+K+PKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRL
Sbjct: 518 LGLLWWQSDAKTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRL 577
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYF+ARTTSDL L+LVLPV FL++VYFMA LR+G+G FF S+LTVFL I+AAQGLGLAI
Sbjct: 578 SAYFVARTTSDLLLDLVLPVFFLLVVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAI 637
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGG+FV++VP+FISWIRY+SFN+HTYK+LLK+QY I
Sbjct: 638 GATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHI 697
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFG 582
+P ++G+R DSGF EV AL AMVFGYRLLAYLSLR+MKL G
Sbjct: 698 TPTIDGIRIDSGFTEVAALTAMVFGYRLLAYLSLRRMKLLAG 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091479|ref|XP_002309268.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855244|gb|EEE92791.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/579 (85%), Positives = 540/579 (93%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
MTS+EEKDILNGI+GSV+PGEVLALMGPSGSGKTTLLNLL GRL +PTVGGSITYND PY
Sbjct: 162 MTSTEEKDILNGISGSVDPGEVLALMGPSGSGKTTLLNLLGGRLNQPTVGGSITYNDGPY 221
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDD+LFPHLTVKETLTYAALLRLP TLTKQQK+KRA+DVI ELGLERC
Sbjct: 222 SKFLKSRIGFVTQDDILFPHLTVKETLTYAALLRLPKTLTKQQKQKRAMDVIYELGLERC 281
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDT+IGGSFVRGVSGGERKRVCIGNEIIINPS+LFLDEPTSGLDSTTAL+ VQ+LQD+AE
Sbjct: 282 QDTVIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKTVQLLQDMAE 341
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK+SEAM YFSSIGC+P IAMNPAEF
Sbjct: 342 GGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKSSEAMLYFSSIGCNPLIAMNPAEF 401
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++DVSVPSEL D+VQ NS+ NGKP+PA+VHEYLVEAYETRVA EKKK
Sbjct: 402 LLDLANGNINDVSVPSELDDKVQIVNSDAGKRNGKPSPAVVHEYLVEAYETRVAVKEKKK 461
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM PIPLDEE+KAKVSS KR WGASW QQYTILF RGIKE RHDYFSWLRITQVL+TA+I
Sbjct: 462 LMVPIPLDEEVKAKVSSLKRQWGASWWQQYTILFCRGIKERRHDYFSWLRITQVLSTAII 521
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWW SD+ S KGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 522 LGLLWWNSDTNSLKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 581
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+LVLPVLFL++VYFMAGLRM A PFFL+MLTVFLSI+AAQGLGLAI
Sbjct: 582 SAYFLARTTSDLPLDLVLPVLFLLVVYFMAGLRMSAAPFFLTMLTVFLSIIAAQGLGLAI 641
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGGYFV+ VPVF+SWIRY+SFN+HTYK+LLK+QY +
Sbjct: 642 GATLMDLKRATTLASVTVMTFMLAGGYFVKRVPVFVSWIRYLSFNYHTYKLLLKVQYKHM 701
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKL 579
+P++NGMR DSG EV ALVAMVFGYRLLAY+SLR+MKL
Sbjct: 702 TPVLNGMRIDSGLTEVSALVAMVFGYRLLAYISLRRMKL 740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437512|ref|XP_004136536.1| PREDICTED: ABC transporter G family member 22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/578 (82%), Positives = 537/578 (92%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+ILNGITG VNPGEVLALMGPSGSGKTTLLNLL GR++ T GGS+TYND PY+K LK
Sbjct: 172 EKEILNGITGLVNPGEVLALMGPSGSGKTTLLNLLGGRIIRSTAGGSVTYNDQPYNKFLK 231
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
S+IGFV Q+DVLFPHLTVKETL YAALLRLPNTLTK+QKEKRAIDVI ELGLERCQDTMI
Sbjct: 232 SRIGFVMQEDVLFPHLTVKETLRYAALLRLPNTLTKEQKEKRAIDVIYELGLERCQDTMI 291
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
GGSFVRGVSGGER+RV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+L +IAEAGKTV
Sbjct: 292 GGSFVRGVSGGERRRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTV 351
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 245
VTTIHQPSSRLFHKFDKLILLGKGSL+Y+GKA+EAM YF+SIGCSP IAMNPAEFLLDLA
Sbjct: 352 VTTIHQPSSRLFHKFDKLILLGKGSLIYYGKAAEAMNYFASIGCSPLIAMNPAEFLLDLA 411
Query: 246 NGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPI 305
NGNL DVSVPSEL+D+VQ ENSE D+ +P+P +V EYLVEAYETRVAE EK+K++ P+
Sbjct: 412 NGNLSDVSVPSELEDKVQMENSEADSRQDRPSPILVQEYLVEAYETRVAEKEKRKMLTPL 471
Query: 306 PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLW 365
LDEE+K+KVS+ +R WGASW +QY+ILFRRGIKE RH+YFSWLRITQVLATAVILGLLW
Sbjct: 472 TLDEELKSKVSNSRRQWGASWWEQYSILFRRGIKERRHEYFSWLRITQVLATAVILGLLW 531
Query: 366 WQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFL 425
WQS+SKSPKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFL
Sbjct: 532 WQSESKSPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFL 591
Query: 426 ARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 485
ARTTSDLPL+L+LP+LFL++VYFMAGLR+ A PFFL+M+TVFLSIVAAQGLGLAIGA LM
Sbjct: 592 ARTTSDLPLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLSIVAAQGLGLAIGATLM 651
Query: 486 DLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVN 545
D+KKATTLASVT+MTFMLAGG+FVQ+VPVF++WIRY+SFN+HTYK+LLK+QY +I P VN
Sbjct: 652 DVKKATTLASVTVMTFMLAGGFFVQKVPVFVAWIRYVSFNYHTYKLLLKVQYNNIIPAVN 711
Query: 546 GMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFGA 583
GM+ D+G EV AL+AMVFGYRLLAY+SLR+M+LH G+
Sbjct: 712 GMKMDNGVVEVTALIAMVFGYRLLAYISLRRMRLHSGS 749
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501170|ref|XP_004161297.1| PREDICTED: ABC transporter G family member 22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/583 (81%), Positives = 539/583 (92%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+ ++ EK+ILNGITG VNPGEVLALMGPSGSGKTTLLNLL GR++ T GGS+TYND PY
Sbjct: 38 LRTNVEKEILNGITGLVNPGEVLALMGPSGSGKTTLLNLLGGRIIRSTAGGSVTYNDQPY 97
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+K LKS+IGFV Q+DVLFPHLTVKE L YAALLRLPNTLTK+QKEKRAIDVI ELGLERC
Sbjct: 98 NKFLKSRIGFVMQEDVLFPHLTVKEALRYAALLRLPNTLTKEQKEKRAIDVIYELGLERC 157
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGSFVRGVSGGER+RV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+L +IAE
Sbjct: 158 QDTMIGGSFVRGVSGGERRRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQILHEIAE 217
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL+Y+GKA+EAM YF+SIGCSP IAMNPAEF
Sbjct: 218 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLIYYGKAAEAMNYFASIGCSPLIAMNPAEF 277
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGNL DVSVPSEL+D+VQ ENSE D+ +P+P +V EYLVEAYETRVAE EK+K
Sbjct: 278 LLDLANGNLSDVSVPSELEDKVQMENSEADSRQDRPSPILVQEYLVEAYETRVAEKEKRK 337
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
++ P+ LDEE+K+KVS+ +R WGASW +QY+ILFRRGIKE RH+YFSWLRITQVLATAVI
Sbjct: 338 MLTPLTLDEELKSKVSNSRRQWGASWWEQYSILFRRGIKERRHEYFSWLRITQVLATAVI 397
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQS+SKSPKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRL
Sbjct: 398 LGLLWWQSESKSPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRL 457
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYFLARTTSDLPL+L+LP+LFL++VYFMAGLR+ A PFFL+M+TVFLSIVAAQGLGLAI
Sbjct: 458 SAYFLARTTSDLPLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLSIVAAQGLGLAI 517
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMD+KKATTLASVT+MTFMLAGG+FVQ+VPVF++WIRY+SFN+HTYK+LLK+QY +I
Sbjct: 518 GATLMDVKKATTLASVTVMTFMLAGGFFVQKVPVFVAWIRYVSFNYHTYKLLLKVQYNNI 577
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFGA 583
P VNGM+ D+G EV AL+AMVFGYRLLAY+SLR+M+LH G+
Sbjct: 578 IPAVNGMKMDNGVVEVTALIAMVFGYRLLAYISLRRMRLHSGS 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570916|ref|XP_003553629.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/582 (81%), Positives = 536/582 (92%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+T+++EKDIL GITGSVNPGEVLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PY
Sbjct: 154 ITTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPY 213
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKS+IGFVTQDDVLFPHLTVKETLTYAA LRLPNTLTK+QKEKRA++VI+ELGLERC
Sbjct: 214 SKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPNTLTKEQKEKRALEVIDELGLERC 273
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGGS+VRG+SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE
Sbjct: 274 QDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 333
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEF
Sbjct: 334 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEF 393
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++D+SVPSEL+D VQ N+E +T NGKP+ ++V EYLVEAY++RVAE EK K
Sbjct: 394 LLDLANGNVNDISVPSELKDIVQVGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTK 453
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
LM P+PLD E+K+KV S KR WGASW +Q++ILF RG KE RHDYFSWLRITQVLATAVI
Sbjct: 454 LMVPVPLDVELKSKVCSCKRQWGASWFEQFSILFSRGFKERRHDYFSWLRITQVLATAVI 513
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRL 420
LGLLWWQSD+K+PKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRL
Sbjct: 514 LGLLWWQSDAKTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRL 573
Query: 421 SAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAI 480
SAYF+ARTTSDL L+LVLPV FL++VYFMA LR+G+G FF S+LTVFL I+AAQGLGLAI
Sbjct: 574 SAYFVARTTSDLLLDLVLPVFFLLLVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAI 633
Query: 481 GAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
GA LMDLK+ATTLASVT+MTFMLAGG+FV++VP+FISWIRY+SFN+HTYK+LLK+QY I
Sbjct: 634 GATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHI 693
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHFG 582
+P ++G+R DSGFREV AL AMVFGYRLLAYLSLR+MKL G
Sbjct: 694 TPTIDGIRIDSGFREVAALTAMVFGYRLLAYLSLRRMKLQAG 735
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.993 | 0.770 | 0.740 | 2.3e-229 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.958 | 0.816 | 0.457 | 3e-133 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.420 | 0.370 | 0.585 | 1.2e-124 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.595 | 0.535 | 0.506 | 1.2e-88 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.411 | 0.302 | 0.452 | 1.1e-73 | |
| FB|FBgn0020445 | 1017 | E23 "Early gene at 23" [Drosop | 0.404 | 0.232 | 0.451 | 1.2e-72 | |
| UNIPROTKB|B2D1N9 | 658 | ABCG2 "ATP-binding cassette su | 0.881 | 0.781 | 0.332 | 3.7e-71 | |
| UNIPROTKB|Q4GZT4 | 655 | ABCG2 "ATP-binding cassette su | 0.881 | 0.784 | 0.332 | 3.7e-71 | |
| RGD|631345 | 657 | Abcg2 "ATP-binding cassette, s | 0.867 | 0.770 | 0.315 | 8.6e-71 | |
| FB|FBgn0003996 | 687 | w "white" [Drosophila melanoga | 0.408 | 0.346 | 0.436 | 4.1e-70 |
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2213 (784.1 bits), Expect = 2.3e-229, P = 2.3e-229
Identities = 429/579 (74%), Positives = 482/579 (83%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+TSS EK+IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PY
Sbjct: 171 LTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPY 230
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
SK LKSKIGFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERC
Sbjct: 231 SKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERC 290
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
QDTMIGG+FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAE
Sbjct: 291 QDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAE 350
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240
AGKTV+TTIHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEF
Sbjct: 351 AGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEF 410
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
LLDLANGN++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKK
Sbjct: 411 LLDLANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKK 470
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
L+ P+PLDEE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVI
Sbjct: 471 LLDPVPLDEEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVI 530
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRL 420
LGLLWWQSD ++P GL+DQAGLLFFIAVFW QERAML+KERAADMYRL
Sbjct: 531 LGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRL 590
Query: 421 SAYFLARTTSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXXXX 480
SAYFLARTTSD YFM GLR+ PFFLSMLTVFL
Sbjct: 591 SAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAI 650
Query: 481 XXXXMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADI 540
MDLKKATTLASVT+MTFMLAGG+FV++VPVFISWIRY+SFN+HTYK+LLK+QY D
Sbjct: 651 GAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDF 710
Query: 541 SPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKL 579
+ +NGMR D+G EV ALV M+FGYRLLAYLSLR+MK+
Sbjct: 711 AVSINGMRIDNGLTEVAALVVMIFGYRLLAYLSLRQMKI 749
|
|
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 268/586 (45%), Positives = 370/586 (63%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
K IL GITGS PGE+LALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K
Sbjct: 104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKR 162
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+IGFVTQDDVL P LTV+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +G
Sbjct: 163 RIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVG 222
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
G FV+G+SGGERKR I EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+
Sbjct: 223 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 282
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLAN 246
TTIHQPSSR+FH FDKL+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA
Sbjct: 283 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 342
Query: 247 GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIP 306
G + D+S+P EL + + ++ D+ ++ +YL + Y+T + EK++
Sbjct: 343 GQVSDISLPDEL---LAAKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRK 393
Query: 307 LDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 366
E ++ + K++W SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW
Sbjct: 394 APEHLQIAIQV-KKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWW 452
Query: 367 QSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLA 426
+S + + L DQ GL+F+I +FW+ E+ L KER A+MYRLS Y++
Sbjct: 453 KSKTDTEAHLRDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVC 512
Query: 427 RTTSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXXXXXXXXMD 486
T D YFMA F ++LT+ L +
Sbjct: 513 STLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLS 572
Query: 487 LKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQY-ADI---SP 542
+K+A +AS+ +M F+L GGY+VQ +P F+ W++Y+SF + +++LLK+QY AD
Sbjct: 573 IKRAGMIASLVLMLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECG 632
Query: 543 IVNGMRT------------DSGFREVCALVAMVFGYRLLAYLSLRK 576
G RT + G +E+ L+AM FGYRL AY LRK
Sbjct: 633 SKGGCRTLQSSSSFDTINLNGGLQELWVLLAMAFGYRLCAYFCLRK 678
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 1.2e-124, Sum P(3) = 1.2e-124
Identities = 144/246 (58%), Positives = 190/246 (77%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S+EE+ IL+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K
Sbjct: 77 STEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITK 136
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ GFV QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++
Sbjct: 137 QTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCEN 196
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
T++G +F+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A
Sbjct: 197 TVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGK 256
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
GKTVVT+IHQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FL
Sbjct: 257 GKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFL 316
Query: 242 LDLANG 247
LDLANG
Sbjct: 317 LDLANG 322
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 186/367 (50%), Positives = 244/367 (66%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
S+EK ILNGITG V PGE LA++GPSGSGKTTLL+ L GRL + T G + YN P+S
Sbjct: 76 SKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPFSGC 134
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+K + GFV QDDVL+PHLTV ETL + ALLRLP++LT+ +K + VI ELGL RC ++
Sbjct: 135 IKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNS 194
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
MIGG RG+SGGE+KRV IG E++INPSLL LDEPTSGLDSTTA RIV ++ +A G+
Sbjct: 195 MIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGR 254
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 243
TVVTTIHQPSSR++H FDK++LL +GS +Y+G AS A+ YFSS+G S + +NPA+ LLD
Sbjct: 255 TVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLD 314
Query: 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEA-YETRVAENEKKKLM 302
LANG +P + Q E SE + K T +E + + + E
Sbjct: 315 LANG------IPPD----TQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNAESHSY- 363
Query: 303 APIPLDEEIKAKVSSPK-RNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVIL 361
E KA + K W +W Q+T+L +RG++E R + F+ LRI QV++ A +
Sbjct: 364 ------EYTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLG 417
Query: 362 GLLWWQS 368
GLLWW +
Sbjct: 418 GLLWWHT 424
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 1.1e-73, Sum P(3) = 1.1e-73
Identities = 114/252 (45%), Positives = 174/252 (69%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-Y-NDHPYSKSL 64
K IL I G + G + A+MGPSG+GKTTLL++L+ RL + GS T Y N + ++
Sbjct: 136 KQILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRL---NINGSGTMYLNGNKSDFNI 192
Query: 65 KSKI-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
K+ G+VTQ D L P LTV+ETL + A L++P + ++K +R D+I+E+GL RC DT
Sbjct: 193 FKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADT 252
Query: 124 MIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
++G + +RG+SGGER+RV I E++ PS++ LDEPTSGLD++T+ ++ L+ +A++
Sbjct: 253 LVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKS 312
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAE 239
G+T++ TIHQP S ++ FD L+LLG G+ +Y+GKA++A+ YF++ G CS + NPA+
Sbjct: 313 GRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKT--NPAD 370
Query: 240 FLLDLANGNLHD 251
F LDL N + D
Sbjct: 371 FFLDLINTQVED 382
|
|
| FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 108/239 (45%), Positives = 161/239 (67%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E+ IL+ ++G V+P EVLA+MGPSGSGKTTLL+ LSG+ GS+ N P +K +
Sbjct: 364 ERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQ--RHIDSGSVFLNREPLTKKWR 421
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+IG+V Q+++ FP LT++ET+ Y ALLRLP ++ + +K ++ ++ L L CQ T
Sbjct: 422 RRIGYVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTKF 481
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KT 184
G RG+SGGE+KR I E++ NP L+ LDEPTSGLDS +A+ ++++L+ A+ KT
Sbjct: 482 GDYLNRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKT 541
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 243
+V ++HQPSS++FH FDKL+LL +G YFG +F IG + + NPA+F+L+
Sbjct: 542 IVISVHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNPADFVLE 600
|
|
| UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 178/536 (33%), Positives = 282/536 (52%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL I G + PG + A++GP+G GK++LL++L+ R + G + N P + K
Sbjct: 62 EKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFK 120
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRLP T+T +K +R VI ELGL++ D+ +
Sbjct: 121 CNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKV 180
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F+RGVSGGERKR I E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 181 GTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 240
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLD 243
+ +IHQP +F FD L LL G L++ G A EA+ YF +IG C P NPA+F LD
Sbjct: 241 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPY--NNPADFFLD 298
Query: 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMA 303
+ NG+ V + E D + E +E + + K TP I E L E Y E K +
Sbjct: 299 IINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI--EKLAEFYVNSSFFKETKVELD 353
Query: 304 PIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATA---VI 360
D+ K S + + S+ Q + RR K + I Q++ T ++
Sbjct: 354 KFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGN--PQASIAQLIVTVFLGLV 411
Query: 361 LGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYR 419
+G +++ D K+ P G++++AG+LFF+ +++ + E + YR
Sbjct: 412 IGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIH-EYISGYYR 468
Query: 420 LSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXX 478
+S+YF + SD YF+ GL+ FF+ MLT+ +
Sbjct: 469 VSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMAL 528
Query: 479 XXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMSFNFHTYKIL 532
+ AT L +++ + M+ G V + V ++SW++Y+S + Y L
Sbjct: 529 AIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAAL 584
|
|
| UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 178/536 (33%), Positives = 282/536 (52%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL I G + PG + A++GP+G GK++LL++L+ R + G + N P + K
Sbjct: 59 EKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFK 117
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRLP T+T +K +R VI ELGL++ D+ +
Sbjct: 118 CNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKV 177
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F+RGVSGGERKR I E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 178 GTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 237
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLD 243
+ +IHQP +F FD L LL G L++ G A EA+ YF +IG C P NPA+F LD
Sbjct: 238 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPY--NNPADFFLD 295
Query: 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMA 303
+ NG+ V + E D + E +E + + K TP I E L E Y E K +
Sbjct: 296 IINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI--EKLAEFYVNSSFFKETKVELD 350
Query: 304 PIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATA---VI 360
D+ K S + + S+ Q + RR K + I Q++ T ++
Sbjct: 351 KFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGN--PQASIAQLIVTVFLGLV 408
Query: 361 LGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYR 419
+G +++ D K+ P G++++AG+LFF+ +++ + E + YR
Sbjct: 409 IGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIH-EYISGYYR 465
Query: 420 LSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXX 478
+S+YF + SD YF+ GL+ FF+ MLT+ +
Sbjct: 466 VSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMAL 525
Query: 479 XXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMSFNFHTYKIL 532
+ AT L +++ + M+ G V + V ++SW++Y+S + Y L
Sbjct: 526 AIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAAL 581
|
|
| RGD|631345 Abcg2 "ATP-binding cassette, subfamily G (WHITE), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 166/526 (31%), Positives = 273/526 (51%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK+IL+ I G + PG + A++GP+G GK++LL++L+ R + G + N P + K
Sbjct: 59 EKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPRGLSGDVLINGAPQPANFK 117
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
G+V QDDV+ LTV+E L ++A LRLP + +K +R +I ELGL++ D+ +
Sbjct: 118 CSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKV 177
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
G F RG+SGGERKR IG E+I +PS+LFLDEPT+GLDS+TA ++ +L+ +++ G+T+
Sbjct: 178 GTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 237
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLD 243
+ +IHQP +F FD L LL G L++ G A +A+ YF+S G C P NPA+F LD
Sbjct: 238 IFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPY--NNPADFFLD 295
Query: 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMA 303
+ NG+ V + QD + +E + KP + E L E Y E K +
Sbjct: 296 VINGDSSAVMLNRGEQDH-EANKTEEPSKREKP----IIENLAEFYINSTIYGETKAELD 350
Query: 304 PIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAV---I 360
+P+ ++ K + + + S+ Q + RR K + + Q++ T + I
Sbjct: 351 QLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSFKNLLGN--PQASVAQLIVTVILGLI 408
Query: 361 LGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRL 420
+G L++ + P G++++AG+ FF+ +++ + E + YR+
Sbjct: 409 IGALYFGLKN-DPTGMQNRAGVFFFLTTNQCFTSVSAVELFVVEKKLFIH-EYISGYYRV 466
Query: 421 SAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXXX 479
S+YF + SD YFM GL+ FF+ M T+ +
Sbjct: 467 SSYFFGKLVSDLLPMRFLPSVIYTCILYFMLGLKRTVEAFFIMMFTLIMVAYTASSMALA 526
Query: 480 XXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMS 523
+ AT L +++ + ML G V + + ++SW++Y S
Sbjct: 527 IAAGQSVVSVATLLMTISFVFMMLFSGLLVNLRTIGPWLSWLQYFS 572
|
|
| FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 4.1e-70, Sum P(3) = 4.1e-70
Identities = 106/243 (43%), Positives = 156/243 (64%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---MEPTVGGSITYNDHPY-SK 62
K +L + G PGE+LA+MG SG+GKTTLLN L+ R ++ + G N P +K
Sbjct: 110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAK 169
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
++++ +V QDD+ LT +E L + A++R+P LT +Q+ R VI EL L +CQ
Sbjct: 170 EMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQH 229
Query: 123 TMIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
T+IG V+G+SGGERKR+ +E + +P LL DEPTSGLDS TA +VQ+L+ +++
Sbjct: 230 TIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQK 289
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
GKTV+ TIHQPSS LF FDK++L+ +G + + G SEA+ +FS +G NPA+F
Sbjct: 290 GKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFY 349
Query: 242 LDL 244
+ +
Sbjct: 350 VQV 352
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q4GZT4 | ABCG2_BOVIN | No assigned EC number | 0.3357 | 0.9296 | 0.8274 | yes | no |
| Q93YS4 | AB22G_ARATH | No assigned EC number | 0.7979 | 0.9931 | 0.7709 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XVI0528 | white-brown-complex ABC transporter family (744 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-142 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-79 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-77 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-76 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-73 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-60 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-59 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-58 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-51 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-41 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-41 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-40 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 7e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-38 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-36 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-36 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-34 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-34 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-33 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-33 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-32 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-31 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-30 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-30 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-30 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-29 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-29 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-29 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-29 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-28 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-28 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-27 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-27 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-27 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-27 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-26 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-26 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-26 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-26 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-26 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-26 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-25 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-25 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-24 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-24 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-24 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-24 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-24 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-24 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-24 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-23 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-23 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-23 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-23 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-23 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 9e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-22 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-22 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-22 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-22 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-22 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-21 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-21 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-20 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-20 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-20 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-20 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-19 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-19 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-19 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-19 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-18 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-18 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-18 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-17 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-17 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-17 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-17 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-17 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-17 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-16 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-15 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-15 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-14 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-14 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-14 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-14 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-14 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-14 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-13 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-09 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 4e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 7e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-09 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 7e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.001 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.003 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.003 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.003 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 276/604 (45%), Positives = 400/604 (66%), Gaps = 50/604 (8%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
+E+ ILNG+TG +PGE+LA++GPSGSGK+TLLN L+GR+ G+I N+ +K
Sbjct: 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK 136
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ + GFVTQDD+L+PHLTV+ETL + +LLRLP +LTKQ+K A VI+ELGL +C++
Sbjct: 137 QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
T+IG SF+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T A R+V L +A+ G
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG 256
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 242
KT+VT++HQPSSR++ FD +++L +G L+FGK S+AMAYF S+G SP MNPA+FLL
Sbjct: 257 KTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316
Query: 243 DLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL- 301
DLANG V SE + N V + LV +Y T +A K +
Sbjct: 317 DLANGVCQTDGV------------SEREKPN-------VKQSLVASYNTLLAPKVKAAIE 357
Query: 302 MAPIPLDEEIKAKVSSPKRNWG------ASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 355
M+ P +S K + ++W Q++IL +R +KE +H+ F+ LR+ QV+
Sbjct: 358 MSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417
Query: 356 ATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAA 415
A A++ GL+WW SD + ++D+ GLLFFI++FW FP F ++F FPQERA+ KERA+
Sbjct: 418 AAALLAGLMWWHSDFRD---VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERAS 474
Query: 416 DMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 475
MY LS+YF+AR DLP+ L+LP +FL + Y+MAGL+ G F L++L + ++ +QG
Sbjct: 475 GMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQG 534
Query: 476 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKI 535
LGLA+GA +MD KKA+T+ +VT++ F+L GG++V ++P ++WI+Y+S F++Y++L+ +
Sbjct: 535 LGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINV 594
Query: 536 QYADISPIVNGM---------RTDSGFRE------------VCALVAMVFGYRLLAYLSL 574
QY + I + + R F E V L+ M GYRLLAYL+L
Sbjct: 595 QYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLAL 654
Query: 575 RKMK 578
R++K
Sbjct: 655 RRIK 658
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-142
Identities = 199/598 (33%), Positives = 306/598 (51%), Gaps = 52/598 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 64
K +L ++G PGE+LA+MG SG+GKTTL+N L+ R + GS+ N P
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 65 KSKI-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
I +V QDD+ P LTV+E L + A LR+P +TK++K +R +V+ LGL +C +T
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 124 MIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
IG V+G+SGGERKR+ +E++ +P LLF DEPTSGLDS A +VQ+L+ +A+ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 242
KT++ TIHQPSS LF FDK+IL+ +G + Y G +A+ +FS +G NPA+F +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
Query: 243 DLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY--ETRVAENEKKK 300
+ +P +EN + I + V + V N
Sbjct: 277 QVLAV------IPG-------SENESRERIEK-----ICDSFAVSDIGRDMLVNTNLWSG 318
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFS-WLRITQVLATAV 359
+ D E + + ASW Q+ L +R D +R+ Q + TA+
Sbjct: 319 KAGGLVKDSE-----NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 360 ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYR 419
++GL++ + KG+++ G LF +F +F I F E + +E + +YR
Sbjct: 374 LIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432
Query: 420 LSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLA 479
+SAYFLA+T ++LPL ++LP LF I Y+M GLR GA F + V L A G
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYL 492
Query: 480 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 537
I A T+ ++ F+L GG+F+ +PV+ W+ Y+S+ + + LL Q+
Sbjct: 493 ISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552
Query: 538 ADISPI----VN----------------GMRTDSGFREVCALVAMVFGYRLLAYLSLR 575
+D+ I N R + ++ LV ++F +RLLAY +LR
Sbjct: 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR 610
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 1e-79
Identities = 95/215 (44%), Positives = 131/215 (60%), Gaps = 38/215 (17%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y 60
S K +L ++G PGE+ A+MGPSG+GK+TLLN L+GR V G + N P
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+S + IG+V QDD+L P LTV+ETL +AA LR
Sbjct: 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------- 110
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
G+SGGERKRV I E++ NPSLLFLDEPTSGLDS++AL+++ +L+ +A+
Sbjct: 111 -----------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
G+T++ +IHQPSS +F FDKL+LL +G ++YFG
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 5e-77
Identities = 158/592 (26%), Positives = 265/592 (44%), Gaps = 41/592 (6%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEPTVGGSITYNDHP 59
++ DIL + G + PGE+ ++G GSG +TLL ++ V G ITY+
Sbjct: 69 RDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT 128
Query: 60 ---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT----LTKQQKEKRAIDVI 112
K + + + + DV FPHLTV ETL +AA + P +++++ K DV
Sbjct: 129 PEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY 188
Query: 113 -NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
GL ++T +G FVRGVSGGERKRV I + + D T GLDS TAL
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 172 VQMLQDIAEAGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG-- 228
++ L+ A T I+Q S + FDK+I+L +G +YFG A +A YF +G
Sbjct: 249 IRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFK 308
Query: 229 CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDT-----ANGKPTPAIVHE 283
C + A+FL L + + E +V E +T + E
Sbjct: 309 CPDRQTT--ADFLTSLTSPAERQIKPGYE--KKVPRTPQEFETYWRNSPEYAQLMKEIDE 364
Query: 284 YLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH 343
YL E+ E ++ +A ++K + P + S+ Q R +
Sbjct: 365 YLDRCSESDTKEAYRESHVAK-------QSKRTRPSSPYTVSFSMQVKYCLARNFLRMKG 417
Query: 344 DYFSWL-RITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTF 402
+ L + + A+IL +++ K+ + G LFF A+ ++ F I +
Sbjct: 418 NPSFTLFMVFGNIIMALILSSVFYNL-PKNTSDFYSRGGALFF-AILFNAFSSLLEIASM 475
Query: 403 PQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLS 462
+ R ++ K R +Y SA +A S++P ++ V+F +I+YFM R AG FF
Sbjct: 476 YEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535
Query: 463 MLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIR 520
+L +F+ +A L +IGA+ L +A T A++ ++ + G+ + + + WI
Sbjct: 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIY 595
Query: 521 YMSFNFHTYKILL-------KIQYADISPIVNGMRTDSGFREVCALVAMVFG 565
Y++ + ++ L+ + + + P G +VC +V G
Sbjct: 596 YVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPG 647
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 1e-76
Identities = 97/212 (45%), Positives = 134/212 (63%), Gaps = 6/212 (2%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSKSL 64
ILN ++ V G+V+A++G SGSGKTTLL+ +SGR+ T G I +N P
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 65 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+ + +V QDD+L P LTV+ETLTY A+LRLP + ++KR DV L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLALT 134
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
IGG+ V+G+SGGER+RV I +++ +P +L LDEPTSGLDS TAL +V L +A +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
V+ TIHQP S LF FD+++LL G ++Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 4e-73
Identities = 168/575 (29%), Positives = 264/575 (45%), Gaps = 86/575 (14%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDH 58
E++ ILN + G V PG + ALMG SG+GKTTLLN+L+ R+ T G G N
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTGVITGGDRLVNGR 828
Query: 59 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
P S + IG+V Q D+ P TV+E+L ++A LR P +++K +K + +VI L +E
Sbjct: 829 PLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME 888
Query: 119 RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSGLDSTTALRIVQML 175
D ++G G G++ +RKR+ IG E++ P LLFLDEPTSGLDS TA I +++
Sbjct: 889 SYADAVVGVPGE---GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYF---GKASEAM-AYFSSIGCS 230
+ +A+ G+ ++ TIHQPS+ LF +FD+L+LL KG +YF G+ S + YF G
Sbjct: 946 RKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAP 1005
Query: 231 --PQIAMNPAEFLLDL--------ANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 280
P+ A NPAE++L++ AN + H+V S V+
Sbjct: 1006 KCPEDA-NPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK----------------- 1047
Query: 281 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQY-TILFRRGIK 339
NE +L A + E+ + AS Q+ +L+R +
Sbjct: 1048 ---------------NELDRLEAELSKAEDDND--PDALSKYAASLWYQFKLVLWRTFQQ 1090
Query: 340 EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFW-----SFFP 394
R + + + + A+ +G +++ S +GL++Q +F V + + P
Sbjct: 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVG-TSLQGLQNQMFAVFMATVLFNPLIQQYLP 1149
Query: 395 IFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRM 454
F A Q +ER + + A+ A+ T ++P NLV +F I Y+ G
Sbjct: 1150 PFVA-----QRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYW 1204
Query: 455 GAGP-------FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGY 507
A L L + + LG + + + A LAS + T L+
Sbjct: 1205 NASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLAS-LLFTMCLSFCG 1263
Query: 508 FVQEVPVFIS-WIRYMSFNFHTYKI--LLKIQYAD 539
+ WI + TY + LL AD
Sbjct: 1264 VLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLAD 1298
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 4e-60
Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
+K L+G++ V PGE+ L+GP+G+GKTTLL +L+G L++PT G I + K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPT-SGEILVLGYDVVKEPA 74
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
++ +IG+V Q+ L+P LTV+E L + A L L+K++ E+R +++ GLE +
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLEDKAN 131
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
VR +SGG ++R+ I ++ +P LL LDEPTSGLD + I ++L+++A+ G
Sbjct: 132 K-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 183 K-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 228
T++ + H D++I+L G ++ G E F G
Sbjct: 187 GVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-59
Identities = 87/215 (40%), Positives = 123/215 (57%), Gaps = 38/215 (17%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
++ +LN I+G V PG + ALMG SG+GKTTLL++L+GR + G I N P
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K+ + G+V Q DV P+LTV+E L ++ALLR
Sbjct: 75 KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------------------------- 107
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
G+S +RKR+ IG E+ PS+LFLDEPTSGLDS A IV+ L+ +A++
Sbjct: 108 ----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS 157
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 215
G+ ++ TIHQPS+ +F KFD+L+LL + G +YFG
Sbjct: 158 GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 4e-58
Identities = 154/556 (27%), Positives = 276/556 (49%), Gaps = 42/556 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L +TG+ PG + ALMG SG+GKTTL+++L+GR + G I + P + ++I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 69 -GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
G+ Q+D+ P +TV+E+L Y+A LRLP ++K++K +V+ + L+ +D ++G
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
V G+S +RKR+ I E++ NPS++F+DEPTSGLD+ A +++ +++ + G+TVV
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 188 TIHQPSSRLFHKFDKLILLGK-GSLLYFG----KASEAMAYFSSIGCSPQIA--MNPAEF 240
TIHQPS +F FD+L+L+ + G ++Y G + + + YF +I P+I NPA +
Sbjct: 1075 TIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134
Query: 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKK 300
+L+++ S+ +E++ + ++ + A+V K+
Sbjct: 1135 MLEVS-------SLAAEVKLGIDFAEHYKSSSLYQRNKALV-----------------KE 1170
Query: 301 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 360
L P P ++ + WG Q + L+++ R ++ +R LA A++
Sbjct: 1171 LSTPPPGASDLYFATQYSQSTWG----QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALM 1226
Query: 361 LGLLWWQSDSK--SPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMY 418
+G ++W+ +K + L G ++ +F T ER + +ERAA MY
Sbjct: 1227 VGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286
Query: 419 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGL 478
Y +A+ ++P L+ + +IVY M A FF F S + G+
Sbjct: 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGM 1346
Query: 479 AIGAILMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFISWIRYMSFNFHTYKILLKIQ 536
++ + + A A+ F L G+F+ ++P + W ++ T L+ Q
Sbjct: 1347 MTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQ 1406
Query: 537 YADI-SPI-VNGMRTD 550
Y D+ I V G D
Sbjct: 1407 YGDVEDTIKVPGGAPD 1422
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 5e-51
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 36/215 (16%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPY---S 61
+ IL +G V PGE++ ++G GSG +TLL L+ R +V G I YN PY +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ +I +V+++DV FP LTV+ETL +A RC+
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL---------------------------RCK 111
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
G FVRG+SGGERKRV I ++ S+L D T GLDS+TAL I++ ++ +A+
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 182 -GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
T +++Q S ++ FDK+++L +G +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 1e-41
Identities = 154/565 (27%), Positives = 270/565 (47%), Gaps = 79/565 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSKSLKS 66
IL +G + P + L+GP SGKTTLL L+G+L +P+ V G ITYN + ++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPR 238
Query: 67 KI-GFVTQDDVLFPHLTVKETLTYAALLR-------LPNTLTKQQKE-----KRAIDVIN 113
K +++Q+DV +TVKETL ++A + L + L +++K+ + +D+
Sbjct: 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298
Query: 114 E-------------------LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-L 153
+ LGL+ C+DT++G +RG+SGG++KRV G E+I+ P+
Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKT 357
Query: 154 LFLDEPTSGLDSTTALRIVQMLQDI---AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210
LF+DE ++GLDS+T +IV+ LQ I EA TV+ ++ QP+ F FD +ILL +G
Sbjct: 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQ 415
Query: 211 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSEND 270
++Y G + +F S G A+FL + V S+ +D+ Q N
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQE----------VTSK-KDQEQYWADRN- 463
Query: 271 TANGKPTPAIVHEYLVEAYET-RVAENEKKKLMAPIPLDEEIKA-----KVSSPKRN-WG 323
KP I E +++ V + +L P + KA K S PK
Sbjct: 464 ----KPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 324 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA--- 380
A W +++ ++ R+ + + Q++ A I ++ +++ + + ED A
Sbjct: 520 ACWDKEWLLM-------KRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT-RNEEDGALYI 571
Query: 381 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 440
G L F ++ + F F + Q + K+R + + L +P++++ V
Sbjct: 572 GALLF-SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESV 630
Query: 441 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 500
+++VI Y+ G A FF +L VFL A G+ I ++ + A T ++ ++
Sbjct: 631 VWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLL 690
Query: 501 FMLAGGYFV--QEVPVFISWIRYMS 523
L GG+ + E+P + W ++S
Sbjct: 691 VFLLGGFILPKGEIPNWWEWAYWVS 715
|
Length = 1470 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 5e-41
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 22/217 (10%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
E+ + L + + GE +A++GPSGSGK+TLLNLL G L +PT G + N +K L
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT-SGEVLINGKDLTK-L 72
Query: 65 KSK---------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
K IGFV Q+ L P LTV E + L+ + ++++ A +++ L
Sbjct: 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVL 129
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GLE D ++ +SGG+++RV I +I NP ++ DEPT LDS TA ++++L
Sbjct: 130 GLE---DRLL-KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185
Query: 176 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
+++ E GKT++ H P L D++I L G +
Sbjct: 186 RELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-40
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
E+ L G++ S+ GE +A++GPSGSGK+TLLN+L G L PT G + + SK
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPT-SGEVRVDGTDISKL 71
Query: 64 --------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+ IGFV Q L P LT E + LL + K+++ +RA +++ +
Sbjct: 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERV 128
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GL + + +SGG+++RV I + +P ++ DEPT LDS T ++++L
Sbjct: 129 GLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 176 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
+++ EAG T+V H P L D++I L G +
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-39
Identities = 65/214 (30%), Positives = 113/214 (52%), Gaps = 8/214 (3%)
Query: 328 QQYTILFRRGIKEHRHD--YFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFF 385
Q L +R D R+ Q L A++ G ++ D+ G ++ GLLFF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT--SLGGLNRPGLLFF 58
Query: 386 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 445
+F +F + F +ER +L +E A+ +Y SAY LA+ +LP++L+ ++FL+I
Sbjct: 59 SILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLI 118
Query: 446 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAG 505
VYFM GL + FFL +L + L+ +AA GLGL I A+ + A+ + + ++ +L
Sbjct: 119 VYFMVGLPVSR--FFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLS 176
Query: 506 GYF--VQEVPVFISWIRYMSFNFHTYKILLKIQY 537
G+F V +P ++ WI Y++ + + L ++
Sbjct: 177 GFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-38
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
L+ ++ +V PGE LAL+GPSG GKTTLL L++G L P G I + +
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-LERPD-SGEILIDGRDVTGVPP 69
Query: 66 SK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+ IG V QD LFPHLTV E + + L+L + K + R +++ +GLE
Sbjct: 70 ERRNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEG---- 122
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAG 182
+ + +SGG+++RV + + PSLL LDEP S LD+ + + L+++ E G
Sbjct: 123 -LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
T + H L D++ ++ +G ++ G
Sbjct: 182 ITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-36
Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 13/219 (5%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
+ +L I+ SV GE+ AL+GP+G+GK+TLL + G L P+ G + + +
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRL 75
Query: 67 KIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQD 122
+IG+V Q D FP +TVK+ + + +K+K +D + +G+E +D
Sbjct: 76 RIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
IG +SGG+++RV + + NP LL LDEP +G+D I +L+++ + G
Sbjct: 135 RQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
KTV+ H + FD++I L + L+ G E +
Sbjct: 190 KTVLMVTHDLGL-VMAYFDRVICLNRH-LIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-36
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLK 65
++ ++ +V GE+ L+G +G+GKTT L +L+G L PT G+ Y+ K+ +
Sbjct: 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPT-SGTAYINGYSIRTDRKAAR 74
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+G+ Q D LF LTV+E L + A L+ L K + ++ ++ LGL +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANK-- 129
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
R +SGG ++++ + +I PS+L LDEPTSGLD + I ++ ++ + G+++
Sbjct: 130 ---RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSI 185
Query: 186 VTTIH 190
+ T H
Sbjct: 186 ILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-36
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 54/211 (25%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
+K L+ I+ +V GE+ L+GP+G+GKTTL+ ++ G L++P G I K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG-LLKPD-SGEIKVLGKDIKKEPE 69
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+K +IG++ ++ L+ +LTV+E L
Sbjct: 70 EVKRRIGYLPEEPSLYENLTVRENLKL--------------------------------- 96
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
SGG ++R+ + ++ +P LL LDEPTSGLD + ++L+++ + G
Sbjct: 97 -----------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 183 KTVVTTIHQPS--SRLFHKFDKLILLGKGSL 211
KT++ + H RL D++ +L G +
Sbjct: 146 KTILLSSHILEEAERL---CDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-35
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
+ L+ I+ ++ GE + ++GP+GSGK+TLL LL+G L PT G + + +K
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPT-SGEVLVDGKDLTKL 68
Query: 64 ----LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
L+ K+G V Q+ D F TV+E + + L +++ E+R + + +GLE
Sbjct: 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLE 125
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+D +SGG+++RV I + ++P +L LDEPT+GLD ++++L+ +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
GKT++ H L D++I+L G
Sbjct: 181 KAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 9e-35
Identities = 70/223 (31%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 61
K IL+ ++ S+ GE+ ++GP+GSGK+TLL L+G L G + +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL--KPKSGEVLLDGKDIASLSP 71
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K L K+ +V Q LTV E L R P+ + K +++ E LE
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEA-LELLG 127
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 180
+ V +SGGER+RV I + +L LDEPTS LD + ++++L+D+ E
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 181 AGKTVVTTIHQP--SSRLFHKFDKLILLGKGSLLYFGKASEAM 221
G TVV +H ++R D LILL G ++ G E +
Sbjct: 188 KGLTVVMVLHDLNLAAR---YADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-34
Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 52/211 (24%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------ 59
+K +LN ++ ++ GE++AL+GPSGSGK+TLL ++G L EP GSI +
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEEPD-SGSILIDGEDLTDLED 69
Query: 60 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
L+ +IG V QD LFPHLTV E +
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 178
G+SGG+++RV + + ++P +L LDEPTS LD T + +L+ +
Sbjct: 100 ------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
A+ G TVV H D++++L G
Sbjct: 148 AQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-34
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 55/211 (26%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
K +L ++ ++ PGE +A++GPSGSGK+TLL LL RL +PT G I +
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDPT-SGEILIDGVDLRD 68
Query: 63 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
SL+ I +V QD LF T++E N L
Sbjct: 69 LDLESLRKNIAYVPQDPFLF-SGTIRE-----------NIL------------------- 97
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
SGG+R+R+ I ++ +P +L LDE TS LD T I++ L+ +
Sbjct: 98 ---------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
A+ GKTV+ H+ S+ D++I+L G
Sbjct: 143 AK-GKTVIVIAHRLST--IRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-33
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 18/226 (7%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
+ +L G+ V GE+LA++GPSGSGK+TLL L+ G L+ P G + + S
Sbjct: 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRPD-SGEVLIDGEDISGLS 68
Query: 63 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
L+ ++G + Q LF LTV E + A LR L++++ + ++ + +GL
Sbjct: 69 EAELYRLRRRMGMLFQSGALFDSLTVFENV--AFPLREHTRLSEEEIREIVLEKLEAVGL 126
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+D +SGG +KRV + + ++P LL DEPT+GLD + I +++
Sbjct: 127 RGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 178 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + G T + H + F D++ +L G ++ G E A
Sbjct: 182 LKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 35/238 (14%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
T K L ++ S+NPGE +AL+GPSG+GK+TLL L+G L+EPT GS+ + +
Sbjct: 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPT-SGSVLIDGTDIN 66
Query: 62 K-------SLKSKIGFVTQDDVLFPHLTVKET-----LTYAALLR-LPNTLTKQQKEKRA 108
K L+ +IG + Q L L+V E L + R L K++K+ RA
Sbjct: 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ-RA 125
Query: 109 IDVINELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163
+ + +GL R D + SGG+++RV I ++ P L+ DEP + L
Sbjct: 126 LAALERVGLLDKAYQRA-DQL---------SGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 164 DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 219
D ++ +++ +L+ I E G TV+ ++HQ L ++ D+++ L G +++ G +E
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVD--LAREYADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
L I+ SV GE +AL+GPSG GK+TLL +++G L PT G + + P
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG-LERPT-SGEVLVDGEP-V 68
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
G+V Q D L P LTV + + L+ + K + +RA +++ +GL +
Sbjct: 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFE 125
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 180
+ ++ +SGG R+RV + + ++P +L LDEP S LD+ T ++ + L DI E
Sbjct: 126 N-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 181 AGKTVV 186
GKTV+
Sbjct: 181 TGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-33
Identities = 66/192 (34%), Positives = 110/192 (57%), Gaps = 15/192 (7%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 63
+ +L GI +V GEV+ ++GPSGSGK+TLL ++ L EP G+I + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPD-SGTIIIDGLKLTDDKK 69
Query: 64 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
L+ K+G V Q LFPHLTV E +T A + ++K + E+RA++++ ++GL
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLAD 127
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
D ++ +SGG+++RV I + +NP ++ DEPTS LD ++ +++D+A
Sbjct: 128 KAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 180 EAGKTVVTTIHQ 191
E G T+V H+
Sbjct: 183 EEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 6e-33
Identities = 64/212 (30%), Positives = 117/212 (55%), Gaps = 16/212 (7%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--- 63
K L+G++ ++ PG + L+GP+G+GKTTL+ +L+ L P+ G+I + K
Sbjct: 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPS-SGTIRIDGQDVLKQPQK 69
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
L+ +IG++ Q+ ++P+ TV+E L Y A L+ + ++ + R +V+ + L
Sbjct: 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK 126
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
IG +SGG R+RV I ++ +PS+L +DEPT+GLD +R +L ++ E +
Sbjct: 127 KIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DR 180
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
V+ + H +++ +L KG L++ G
Sbjct: 181 IVILSTHIVEDVESL-CNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-32
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 27/228 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
+ +L ++ ++ G+ +A++GPSGSGK+T+L LL R + + GSI + +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVS-SGSILIDGQDIREVTL 70
Query: 63 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELG 116
SL+ IG V QD VLF + T+ + Y T ++ + A D I +
Sbjct: 71 DSLRRAIGVVPQDTVLF-NDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKI--MR 122
Query: 117 LERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
DT++G RG+ SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 123 FPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L+D++ G+T + H+ S+ DK+I+L G ++ G E +A
Sbjct: 180 LRDVS-KGRTTIVIAHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 18/193 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 63
+K++L GI+ SV GEV+ ++GPSGSGK+TLL L+G L EP GSIT +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPD-SGSITVDGEDVGDKKD 71
Query: 64 ---LKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGLE 118
L+ K+G V Q LFPHLTV E +T A + +L K + ++A++++ ++GL
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS----KAEAREKALELLEKVGLA 127
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
D ++ +SGG+++RV I + ++P ++ DEPTS LD ++ +++D+
Sbjct: 128 DKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 179 AEAGKTVVTTIHQ 191
AE G T++ H+
Sbjct: 183 AEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-31
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 62
L+GI S++ GE + L+GPSG+GK+TLL L+ PT G+I N S
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPT-SGTIRVNGQDVSDLRGRAIP 74
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
L+ KIG V QD L P V E + +A L + ++ KR + +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGV-PPREIRKRVPAALELVGLSHKHR 131
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ +SGGE++RV I I+ +P++L DEPT LD T I+ +L+ I +AG
Sbjct: 132 AL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 183 KTVVTTIHQPSSRLFHKFDK-LILLGKGSL 211
TVV H + L +I L +G L
Sbjct: 187 TTVVVATH--AKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 6e-31
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 62
++ L ++ + GE + L GPSG+GK+TLL L+ G PT G I N H S+
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPT-RGKILVNGHDLSRLKGR 72
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 117
L+ +IG V QD L P TV E + LR+ + K +E +R +V++ +GL
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRV---IGKPPREIRRRVSEVLDLVGL 127
Query: 118 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ + +SGGE++RV I I+ P++L DEPT LD + I+++ +
Sbjct: 128 KHKARA------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181
Query: 177 DIAEAGKTVVTTIH 190
+I G TV+ H
Sbjct: 182 EINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-31
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 66
++ I+ + GE + L+GPSG GKTTLL +++G +P+ G I + + K
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPS-SGEILLDGEDITDVPPEKR 77
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
IG V Q LFPH+TV+E + + L++ L K + + R + + +GLE
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG-----FA 130
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 185
+SGG+++RV + ++ P +L LDEP S LD+ ++ + L+++ E G T
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190
Query: 186 V 186
V
Sbjct: 191 V 191
|
Length = 352 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
K L ++ + GE + L+GP+GSGK+TLL LL+G L++PT G + +
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKPT-SGEVLVDGLDT 68
Query: 61 S-----KSLKSKIGFVTQDDVLFPHL-----TVKETLTYAAL-LRLPNTLTKQQKEKRAI 109
S L+ K+G V Q+ P TV++ + + L LP +++ E+R
Sbjct: 69 SSEKSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGLENLGLP----REEIEERVA 120
Query: 110 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
+ + +GLE D +SGG+++RV I + + P +L LDEPT+GLD
Sbjct: 121 EALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 170 RIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
++++L+ + E GKT++ H + D++++L G +L G +E
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIGF 70
EV + G SG+GK+TLL ++G L +P GG+I N S K KIG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 71 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 130
V Q LFPHL V+E L + L R N + ++ +++ LGL+ + +
Sbjct: 80 VFQQYALFPHLNVRENLAFG-LKRKRNREDRISVDE----LLDLLGLDH-----LLNRYP 129
Query: 131 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE++RV + + P LL LDEP S LD L+++ L+ I + V +
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 191 QPSSRLFHKFDKLILLGKGSLLYFG 215
S + D+++++ G L Y G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------- 61
L+ ++ S+ GE L L+G SGSGK+TL + G + GSI ++
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--LLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 62 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 118
K + +I V QD L P +T+ E + + + K+ +++ + ++ +GL E
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPE 136
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+ + +SGG+R+RV I + +NP LL DEPTS LD + +I+ +L+ +
Sbjct: 137 EVLN-----RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 179 AEA-GKTVV 186
E G T++
Sbjct: 192 QEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 34/284 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
K ++ + ++ GE L L+GPSGSGKTT L +++ RL+EPT G I + S
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPT-SGEILIDGEDISDLDP 70
Query: 63 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 119
L+ KIG+V Q LFPHLTV E + +P L K++ +KRA ++++ +GL+
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 178
+ + +SGG+++RV + + +P +L +DEP LD T ++ + ++++
Sbjct: 126 SE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 238
E GKT+V H D++ ++ G ++ + E I NPA
Sbjct: 183 KELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDE-------------ILANPA 228
Query: 239 -EFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 281
+F+ D + + + S + E A+G+P
Sbjct: 229 NDFVEDFFGESERGLRLLSLVSVADAVRRGE--PADGEPLLEGF 270
|
Length = 309 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-30
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
E+K +L I S+ PGE +A++GP+G+GKTTL+NLL R +P G I +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQ-KGQILIDGIDIRDIS 71
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 118
KSL+S IG V QD LF T+ E + + + KE A D I +L G
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGY- 129
Query: 119 RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
DT++G G +S GER+ + I ++ +P +L LDE TS +D+ T I + L+
Sbjct: 130 ---DTVLGENGG---NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + G+T + H+ S+ DK+++L G ++ G E +A
Sbjct: 184 KLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-29
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK 62
+K IL+ + ++ G++ A++G SGSGK+TLLN++ L+E G + N P +
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNS 67
Query: 63 SLKS-----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
S K+G++ Q+ L + TV+E L + L+K++K ++ + + ++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGL 124
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
I +SGGE++RV + I+ P L+ DEPT LD ++ +L +
Sbjct: 125 NLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILL 206
+ + GKT++ H P + + D++I L
Sbjct: 180 LNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L ++ V PGE LA++GP+G+GK+TLL + G L++PT G SI P K K +I
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSG-SIRVFGKPLEKERK-RI 70
Query: 69 GFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTM 124
G+V Q D FP ++V++ + + +K +D + +GL D
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
IG +SGG+++RV + ++ +P LL LDEP +G+D T I ++L+++ G T
Sbjct: 130 IGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
++ H + FD+++LL + ++ G
Sbjct: 185 ILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 62
L + +N GE++A++GPSG+GK+TLL L+G L++PT G I +N +K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPT-SGEILFNGVQITKLKGK 74
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 113
L+ IG + Q L P L+V E + L +K+ K +A+D +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALE 133
Query: 114 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
+G+ R T+ SGG+++RV I ++ P ++ DEP + LD +A
Sbjct: 134 RVGILDKAYQRA-STL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224
+++ +L+DI + G TV+ +HQ + D++I L G +++ G ASE
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-29
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 62
L+ ++ + GE L L GPSG+GKTTLL LL G L P+ G + ++
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PS-RGQVRIAGEDVNRLRGRQ 73
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
L+ +IG V QD L P TV E + +R +++ ++R + ++GLE
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHK 130
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
D F +SGGE++RV I I+ +P LL DEPT LD + RI+ +L+ + +
Sbjct: 131 ADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 181 AGKTVVTTIHQPS-SRLFHKFDKLILLGKG 209
G TV+ H S ++I+L G
Sbjct: 186 RGTTVIVATHDLSLVDRVAH--RVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
++L + + GE + L+GPSG GK+TLL +++G L EPT G I + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPT-SGEILIDGRDVTDLPP 72
Query: 66 SK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----R 119
K I V Q+ L+PH+TV E + + LR + K + +KR +V LGLE R
Sbjct: 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+SGG+R+RV + ++ P + LDEP S LD LR V M +I
Sbjct: 130 K---------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD--AKLR-VLMRSEIK 177
Query: 180 EAGKTVVTTI----HQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ + + TT H + D+++++ G + G E
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLE 220
|
Length = 338 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I SV GE +A++GPSG GK+TLL L++G L +PT G + + P I
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPT-SGEVLLDGRP-VTGPGPDI 74
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
G+V Q+D L P LTV + + LR +K + +RA +++ +GL +D
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----K 126
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVV 186
+ +SGG R+RV I + P LL LDEP LD+ T + L + E KTV+
Sbjct: 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
+ +L I+ + GE +AL+GPSGSGK+TL+NL+ R + G I + H
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVD-SGRILIDGHDVRDY 69
Query: 62 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GL 117
SL+ +IG V+QD LF + TV E + Y + + + A + I EL G
Sbjct: 70 TLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGY 128
Query: 118 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
DT+IG RGV SGG+R+R+ I ++ +P +L LDE TS LD+ + + L
Sbjct: 129 ----DTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
+ + + +T H+ S+ D++++L G ++ G E +A
Sbjct: 182 ERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERGTHEELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 62
K L I ++NPGE +A++GPSG+GK+TLL ++ RL+EP+ GSI +K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPS-SGSILLEGTDITKLRGK 72
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 113
L+ +IG + Q L LTV E + + L P +++ KE RA+ +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-RALSALE 131
Query: 114 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
+GL R D + SGG+++RV I + P L+ DEP + LD T+
Sbjct: 132 RVGLADKAYQRA-DQL---------SGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 169 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 219
+++ L+ I E G TV+ +HQ L K+ D+++ L G +++ G SE
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSL 64
L+ ++ SV PGE+ L+GP+G+GKTTL NL+SG L PT GS+ ++ P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPT-SGSVLFDGEDITGLPPHEIA 73
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-------TKQQKEKRAIDVINELGL 117
+ IG Q LFP LTV E + AA R + L +++ +RA +++ +GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
D G +S G+++R+ I + +P LL LDEP +GL+ + +++++
Sbjct: 134 ADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188
Query: 178 IAEAGKTVV 186
+ E G TV+
Sbjct: 189 LRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 17/219 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------ 62
IL+G+ V GE+LA++G SGSGK+TLL L+ G L+ P G I + +
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG-LLRPD-KGEILIDGEDIPQLSEEEL 80
Query: 63 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
++ ++G + Q LF LTV E + + LR L + + + + +GL
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMKLELVGL---- 134
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ +SGG RKRV + I ++P LLFLDEPTSGLD +A I ++++++ +A
Sbjct: 135 RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194
Query: 182 -GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
G TV+ H S L D++ +L G ++ G E
Sbjct: 195 LGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-28
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
+ +L+ ++ S+ GE++ ++GP+G+GK+TLL L+G L++P+ G I + +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLKPS-SGEILLDGKDLASLSP 68
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K L KI +V Q L L L ++ NEL
Sbjct: 69 KELARKIAYVPQ------------ALELLGLAHL--------ADRP----FNEL------ 98
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 180
SGGER+RV + + P +L LDEPTS LD + ++++L+ +A E
Sbjct: 99 ------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
GKTVV +H + + D++ILL G ++ G
Sbjct: 147 RGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 9e-28
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKS 63
LN ++ + GE L ++G SGSGK+TL LL+G L +P+ G SI + P +K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSG-SILLDGKPLAPKKRAKA 79
Query: 64 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ V QD L P TV L+ P+ L+K Q+ R ++++++GL
Sbjct: 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQ--RIAELLDQVGL---- 130
Query: 122 DTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
SF+ +SGG+R+R+ I +I P LL LDEPTS LD + +I+ +L +
Sbjct: 131 ----PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226
+ + I + + H D++ ++ G ++ G E +++ S
Sbjct: 187 LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 63
IL G++ +V GE++AL+G +G+GKTTLL + G + P GSI ++ +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHER 72
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 121
++ IG+V + +FP LTV+E L A R ++ K K ++ + EL L+ +
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYAR------RRAKRKARLERVYELFPRLKERR 126
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 127 KQL-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 182 GKTVV 186
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
L+ I+ SV GE+ L+GP+G+GKTT + ++ G ++ P G + ++ P + +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-IILPD-SGEVLFDGKPLDIAAR 69
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
++IG++ ++ L+P + V + L Y A L+ L K++ +R + + L L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYAN--- 123
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
V +S G +++V +I +P LL LDEP SGLD + +++++A AGKTV
Sbjct: 124 --KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 186 VTTIHQPSS--RLFHKFDKLILLGKG 209
+ + HQ L D+++LL KG
Sbjct: 182 ILSTHQMELVEEL---CDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 26/219 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 67
L ++ V G+ ++GP+GSGK+ LL ++G ++P G I N D K
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG-FIKPD-SGKILLNGKDITNLPPEKRD 72
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
I +V Q+ LFPH+TV + + Y R + K++ E++ +++ LG++ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVD---KKEIERKVLEIAEMLGIDHLLN----- 124
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+SGGE++RV I +++NP +L LDEP S LD T ++ + L+ I + + VT
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVT 182
Query: 188 TIHQPSSRLFHKF-------DKLILLGKGSLLYFGKASE 219
+H + H F DK+ ++ G L+ GK E
Sbjct: 183 VLH-----VTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKS 63
K +L I +NPGE++ L GPSGSGKTTLL L+ G + E GS+ +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE----GSLKVLGQELYGA 72
Query: 64 -------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ IG++ Q L LT ++ + A L L L+ Q+ +RA ++ +G
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
L D + +SGG+++RV I ++ P L+ DEPT+ LDS + +V+++Q
Sbjct: 131 LGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 177 DIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212
+A E G T++ H R+ D+++ + G LL
Sbjct: 186 KLAREQGCTILIVTHDN--RILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 3e-27
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
IL G++ ++ PG+ +AL+G SG GK+T+++LL R +PT G I + + L
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTS-GEILLDGVDIRDLNLRWL 75
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINEL--GLER 119
+S+IG V+Q+ VLF T+ E + Y + T + ++ + D I L G
Sbjct: 76 RSQIGLVSQEPVLFD-GTIAENIRYG---KPDATDEEVEEAAKKANIHDFIMSLPDGY-- 129
Query: 120 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + + + L
Sbjct: 130 --DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ G+T + H+ S+ D + +L G ++ G E MA
Sbjct: 185 AMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKSKIG 69
++ GE+ L+G +G+GKTTLL +++ L+ P G +T + ++ KIG
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIAT-LLIPD-SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 129
+ + L+ LT +E L Y A L N L++++ + R ++ L L D
Sbjct: 79 VLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRR----- 130
Query: 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
V S G +++V I ++ +PS+L LDEPTSGLD T + ++ + G+ V+ +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 190 H--QPSSRLFHKFDKLILLGKGSLLYFG 215
H Q L D++I+L KG ++ G
Sbjct: 191 HIMQEVEAL---CDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-27
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS------ 63
++ ++ + GE L L+G SGSGK+TL +L+G L+ P+ GSI ++ +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPS-SGSIIFDGQDLDLTGGELRR 364
Query: 64 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ ++ F L P +TV + L LR+ + ++ R +++ +GL
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 180
+ +SGG+R+RV I + + P LL LDEP S LD + +++ +L+D+ E
Sbjct: 421 --EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 181 AGKTVV 186
G T +
Sbjct: 479 LGLTYL 484
|
Length = 539 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 23/220 (10%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
E IL G+ V GE +A++GPSGSGK+TLL +L+G L +P+ G + P
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPS-SGEVRLLGQPLH 75
Query: 62 K-------SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
K +L+++ +GFV Q L P+LT E + LR + + A ++
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRA-GAKALLE 132
Query: 114 ELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+GL +R + +SGGE++RV + P +LF DEPT LD T +I
Sbjct: 133 AVGLGKRL------THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 173 QMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
+L + E G T+V H P L + D+ + L G L
Sbjct: 187 DLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-27
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 64
L+ I+ + GE++AL+GPSG+GK+TLL +++G L P G I N D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETPD-AGRIRLNGRVLFDVSNLAVR 75
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
K+GFV Q LFPH+TV + + + +R + + + + EL L Q
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-----VEEL-LRLVQLEG 129
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 183
+ + +SGG+R+RV + + + P +L LDEP LD+ + + L+ + G
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSL 211
T V H L D++++L +G +
Sbjct: 190 TTVFVTHDQEEALEL-ADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-27
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
L ++ ++ GE++ ++GPSG GKTTLLNL++G + P GSI N ++
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTP-SRGSIQLNGRRIEGP-GAER 76
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
G V Q++ L P L V + + + LR + K Q+ + A ++ +GLE + I
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-- 131
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVT 187
+SGG R+RV I + + P LL LDEP LD+ T ++ ++L D+ + GK V+
Sbjct: 132 ---QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 188 TIHQPSSRLFHKFDKLILLGKG 209
H LF +L++L G
Sbjct: 189 ITHDIEEALFLA-TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 23/227 (10%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+K +L I+ S+ PGE +A++GPSGSGK+TL+ LL RL +PT G I +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPT-SGEILIDGIDIRDIS 397
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINEL 115
SL+ +IG V+QD +LF T++E + T ++ E+ + I
Sbjct: 398 LDSLRKRIGIVSQDPLLF-SGTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN- 450
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
L DT++G V +SGG+R+R+ I ++ NP +L LDE TS LD+ T ++Q
Sbjct: 451 -LPDGYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTET-EALIQDA 507
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G+T + H+ S+ D++I+L G ++ G E +A
Sbjct: 508 LKKLLKGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHP-YSKSL 64
++G++ + GE+L ++G SGSGK+ L + G L +P VGG I ++ S S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 65 K-------SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
K +I + QD L P +T+ + + L L+K++ ++RAI+++ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVLRLHGKGLSKKEAKERAIELLELV 138
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
G+ S+ +SGG R+RV I + +NP LL DEPT+ LD T +I+ +L
Sbjct: 139 GIPD--PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 176 QDIA-EAGKTVV 186
+++ E G ++
Sbjct: 197 KELQREKGTALI 208
|
Length = 316 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
+ K L+ + ++ G++ AL+G SG+GK+TLLNLL G L G I N
Sbjct: 329 RYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL--APTQGEIRVNGIDLR 386
Query: 62 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN-ELG 116
++ + +I +V+Q+ LF T++E + A + + ++ + G
Sbjct: 387 DLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG 445
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
L DT+IG G+SGG+ +R+ + ++ SLL LDEPT+ LD+ T I+Q LQ
Sbjct: 446 L----DTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
++A+ KTV+ H+ D++++L G L+ G E
Sbjct: 501 ELAK-QKTVLVITHRLEDAA--DADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 29/217 (13%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
++ +L ++ + PGE +A++G SGSGK+TLL LL G +P G I + +
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQ-GRILLDGVDLNDID 541
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DVINEL- 115
SL+ ++G+V QD LF +++E + P ++ E + + I L
Sbjct: 542 LASLRRQVGYVLQDPFLF-SGSIRENIALGN----PEATDEEIIEAAQLAGAHEFIENLP 596
Query: 116 -GLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
G DT +G G+ +SGG+R+R+ + ++ P +L LDE TS LD T I+
Sbjct: 597 MGY----DTPVGEGGA---NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
Q L I + G+TV+ H+ S+ D++I+L +G
Sbjct: 650 QNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 31/220 (14%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
+E L+ ++ ++ GE +A++G GSGK+TLL LL+G L +PT GS+ + +
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPT-SGSVLLDGTDIRQLD 72
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-- 118
L+ IG+V QD LF + T+++ +T A L ++R + G+
Sbjct: 73 PADLRRNIGYVPQDVTLF-YGTLRDNITLGAPL---------ADDERILRAAELAGVTDF 122
Query: 119 -----RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
D IG G RG+SGG+R+ V + ++ +P +L LDEPTS +D + R+
Sbjct: 123 VNKHPNGLDLQIGERG---RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
+ L+ + KT++ H+PS L D++I++ G +
Sbjct: 180 KERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 16/221 (7%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYS 61
+ ++NG++ SV GE++ L+GP+G+GKTT ++ G L++P G I + P
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG-LVKPD-SGKILLDGQDITKLPMH 70
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K + IG++ Q+ +F LTV+E + A L L+K+++E++ +++ E + +
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRG--LSKKEREEKLEELLEEFHITHLR 127
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ S +SGGER+RV I + NP L LDEP +G+D I ++++ + +
Sbjct: 128 KSK-ASS----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G V+ T H D+ ++ +G +L G E A
Sbjct: 183 GIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 18/211 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKS 66
++G++ +V PGEV L+GP+G+GKTT L +L+G L+EP G T ++ +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG-LLEPD-AGFATVDGFDVVKEPAEARR 78
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
++GFV+ L+ LT +E L Y A L L + R ++ + LG+E D +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
G S G R++V I ++ +P +L LDEPT+GLD + + ++ + GK ++
Sbjct: 136 G-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 187 TTIH--QPSSRLFHKFDKLILLGKGSLLYFG 215
+ H Q RL D++++L +G ++Y G
Sbjct: 191 FSTHIMQEVERL---CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 25/221 (11%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
+ +L G++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N S
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPT-SGEVLFNGQSLS 70
Query: 62 KSLKSKI--------GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
K ++ GF+ Q L P T E + L+ + ++ ++RA +++
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
++GLE + +SGGER+RV I ++ PSL+ DEPT LD+ A I
Sbjct: 128 KVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
Query: 174 MLQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSL 211
++ ++ T VVT H L K D+++ + G L
Sbjct: 183 LMLELNRELNTSFLVVT--HDL--ELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-26
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYN--- 56
T + ++ V PGE+L ++G SGSGK+TL L G L E G + +
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76
Query: 57 -----DHPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 109
+ K +I + QD L P +T+ + + LRL ++ + KRA+
Sbjct: 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR--EALRLHGKGSRAEARKRAV 134
Query: 110 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
+++ ++GL D + +SGG R+RV I + + P LL DEPT+ LD TT
Sbjct: 135 ELLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 170 RIVQMLQDI-AEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASE 219
+I+ +L+D+ E G V+ H + L D+++++ KG ++ G E
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAEL---ADRVVVMYKGEIVETGPTEE 241
|
Length = 539 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 30/230 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVG----GSITYN-DHPY 60
+L+GI V PGEV+A++GPSGSGKTTLL NLL +P G G IT +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE----QPEAGTIRVGDITIDTARSL 73
Query: 61 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
S+ L+ +GFV Q+ LFPH TV E + + + K++ RA +++ +
Sbjct: 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--IVKGEPKEEATARARELLAK 131
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+GL + S+ R +SGG+++RV I + + P ++ DEPTS LD ++
Sbjct: 132 VGLAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHK--FDKLILLGKGSLLYFGKASEAMA 222
++ +A+ +T+V H+ S F + D+ I + +G ++ G A A
Sbjct: 187 IRQLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-26
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+K +L+ I+ V GE+ +GP+G+GKTT + ++ G L++P G IT++ Y K+++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPD-SGEITFDGKSYQKNIE 69
Query: 66 --SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQD 122
+IG + + +P+LT +E L A L K+ ID V++ +GL+
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLL--------GIRKKRIDEVLDVVGLKD--- 118
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
V+G S G ++R+ I ++ NP LL LDEPT+GLD + +++ + + G
Sbjct: 119 --SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213
TV+ + H S + D++ ++ KG L+
Sbjct: 177 ITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 63
L+ ++ + GE+ ++G SG+GK+TLL L++ L PT GS+ + S++
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPT-SGSVFVDGQDLTALSEAELR 79
Query: 64 -LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
L+ KIG + Q L TV E + + L L K + ++R +++ +GL D
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAGV-PKAEIKQRVAELLELVGLSDKAD 136
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 181
+ +SGG+++RV I + NP +L DE TS LD T I+++L+DI E
Sbjct: 137 -----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191
Query: 182 GKTVVTTIHQP 192
G T+V H+
Sbjct: 192 GLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 25/227 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 62
+K L I+ + GE+ AL+GPSG GK+TLL N L+ + G + +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 63 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ ++G V Q FP ++ + + Y L K K +D E
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEA 123
Query: 117 LERCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L + D + G+SGG+++R+C+ + P +L LDEPTS LD + +I ++
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183
Query: 175 LQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ ++ + V+ T + Q ++R+ D+ L G L+ FG +
Sbjct: 184 IAELKKEYTIVIVTHNMQQ-AARV---ADRTAFLLNGRLVEFGPTEQ 226
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-25
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 73
+V GE++A++GPSG+GK+TLLNL++G E G I N DH S + + + Q
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAG--FETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 74 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132
++ LF HLTV + + L P L +Q+EK ++GL + G
Sbjct: 79 ENNLFAHLTVAQNI---GLGLSPGLKLNAEQREKVE-AAAAQVGLAGFLKRLPG-----E 129
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 188
+SGG+R+RV + ++ +L LDEP S LD ALR +ML ++ E T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALR-AEMLALVSQLCDERKMTLLMV 186
Query: 189 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
H P D+++ L G + G E ++
Sbjct: 187 THHPED-AARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+K ++ I+ V PGE+ L+GP+G+GKTT ++ G L+EPT G IT+N P S+ +K
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG-LLEPT-EGEITWNGGPLSQEIK 71
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
++IG++ ++ L+P +TV++ L Y A L K + + LER +
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAW-LERLEIVGK 123
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTALRIVQMLQDIAEAGK 183
++ +S G ++++ + +I P LL LDEP SGLD + L+ + ++ E G
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK--DAIFELKEEGA 181
Query: 184 TVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224
T++ + H+ L D+L++L KG + +G + F
Sbjct: 182 TIIFSSHRMEHVEEL---CDRLLMLKKGQTVLYGTVEDIRRSF 221
|
Length = 300 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKS 66
++G+ V GEV +GP+G+GKTT + +L+ L+ PT G+ + + ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT-LLRPT-SGTARVAGYDVVREPRKVRR 66
Query: 67 KIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
IG V Q + LT +E L L LP K + E+RA +++ L D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRP- 121
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
V SGG R+R+ I +I P +LFLDEPT+GLD T I ++ + E G T+
Sbjct: 122 ----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 186 VTTIH 190
+ T H
Sbjct: 178 LLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 65
+N + + GE L L+GPSGSGKTT + +++ RL+EPT G I + + L+
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPT-SGEIFIDGEDIREQDPVELR 74
Query: 66 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
KIG+V Q LFPH+TV+E + LL+ P K++ +RA +++ +GL+ +
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----KEKIRERADELLALVGLDPAE--- 127
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GK 183
+ +SGG+++RV + + +P LL +DEP LD T ++ + + + + GK
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187
Query: 184 TVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
T+V H + RL D++ ++ G ++ G E +
Sbjct: 188 TIVFVTHDIDEAFRL---ADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-----HPYSKS 63
L G++ V GE++AL+G +G+GKTTLL + G + G I ++ P +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHER 75
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 121
+ I +V + +FP LTV+E L A R ++ ++R ++ + EL L+ +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYAR-----RDKEAQERDLEEVYELFPRLKERR 130
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 131 NQR-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G + + Q + D+ +L G ++ G A+E +A
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---- 60
+ IL+ I+ + PGEV+ ++G SGSGK+TL L+ G + + H
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--FYVPENGRVLVDGHDLALAD 70
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGL 117
L+ ++G V Q++VLF + ++++ + AL ++ + + + A D I+EL
Sbjct: 71 PAWLRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISELPE 126
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
DT++G G+SGG+R+R+ I +I NP +L DE TS LD + I++ + D
Sbjct: 127 G--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
I AG+TV+ H+ S+ D++I++ KG ++ G E +A
Sbjct: 184 IC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 4e-24
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 34 TTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88
+TLL L++G L++PT G+I + K L+ +IG V QD LFP LTV+E L
Sbjct: 1 STLLKLITG-LLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 148
+ L ++ + RA + + +GL D G+ SGG+++RV I ++
Sbjct: 59 FG--------LRDKEADARAEEALERVGLPDFLDREPVGTL----SGGQKQRVAIARALL 106
Query: 149 INPSLLFLDEPTS 161
P LL LDEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-24
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLK 65
+L + ++ GE++ LMGPSG GK+TLL+ + G L + G + N+ + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+IG + QD +LFPHL+V + L +A LP TL + A + GL+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFH--- 129
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+SGG+R RV + ++ P L LDEP S LD ALR
Sbjct: 130 --QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV--ALR 170
|
Length = 213 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 15/223 (6%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----P 59
+ + ++ ++ +VN GE++ L+GP+G+GKTT ++ G + P G+I +D P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLP 71
Query: 60 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ IG++ Q+ +F L+V + L A+L++ + L+ +Q+E RA +++ E +E
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+D+M G S +SGGER+RV I + NP + LDEP +G+D + + I ++++ +
Sbjct: 130 LRDSM-GQS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
++G V+ T H L ++ ++ +G L+ G +E +
Sbjct: 185 DSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 7e-24
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PY 60
++ ++N ++ VN GE++ L+GP+G+GKTT ++ G L+ P G I +D P
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG-LVRPD-SGKILLDDEDITKLPM 73
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
K + IG++ Q+ +F LTV++ + A L L K ++++ ++ E +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+D+ S +SGGER+RV I + NP + LDEP +G+D + I ++++ + +
Sbjct: 133 RDSK-AYS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 181 AGKTVVTTIH 190
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
K IL ++ VNPGE A++GP+G+GKTTLL+LL+G P G +T + K
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99
Query: 63 ---SLKSKIGFVT--QDDVLFPHLTVKETLT---YAALLRLPNTLTKQQKEKRAIDVINE 114
L+ +IG V+ + TV++ + +A++ LT + A ++
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA-AAQWLLEL 158
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
LG + + +S GE++RV I ++ +P LL LDEP GLD +++
Sbjct: 159 LGAKH-----LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213
Query: 175 LQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216
L+++A ++ H F +LL +G ++ GK
Sbjct: 214 LEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 33/214 (15%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSKS 63
L+ ++ ++ PGE +A++G GSGK+TLL LL G L +PT GS+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQPT-EGSVLLDGVDIRQIDPAD-- 536
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALL----RLPNTLTKQQKEKRAIDVINEL--GL 117
L+ IG+V QD LF + T+++ + A + + + GL
Sbjct: 537 LRRNIGYVPQDPRLF-YGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGL 591
Query: 118 ERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
D IG G R +SGG+R+ V + ++ +P +L LDEPTS +D+ + R L
Sbjct: 592 ----DMQIGERG---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
+ AGKT+V H+ S L D++I++ G
Sbjct: 645 KRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
+ +L G+T +++PGEV+AL+GPSGSGK+T+ LL L +PT GG + + P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPT-GGQVLLDGVPLVQYDH 550
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L ++ V Q+ VLF +V+E + Y + K A D I E
Sbjct: 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME--FPNGY 607
Query: 122 DTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
DT +G GS +SGG+++R+ I ++ P +L LDE TS LD+ Q+LQ+
Sbjct: 608 DTEVGEKGSQ---LSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESR 660
Query: 180 E-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
A +TV+ H+ S + D++++L KGS++ G + M
Sbjct: 661 SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-23
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 62
++L G+ + GEVLAL+G +G+GK+TLL L+G L+ P G++ + P YS+
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQ-SGAVLIDGEPLDYSR 60
Query: 63 S----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+ ++G V Q DD LF V + + + L L L++ + E+R + + +G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFG-PLNL--GLSEAEVERRVREALTAVG 116
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
++ +SGGE+KRV I + + P +L LDEPT+GLD +++ +L+
Sbjct: 117 ASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 177 DIAEAGKTVVTTIH 190
+ G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-23
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
+N ++ V PGE++ L+GP+G+GKTTL NL++G +P+ G++ + + +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPS-SGTVIFRGRDITGLPPHRIA 77
Query: 65 KSKIGFVTQDDVLFPHLTVKE--------TLTYAALLRLPNTLTKQQK-EKRAIDVINEL 115
+ I Q LFP LTV E L + LL P ++++ +RA +++ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GL D G +S G+++R+ I + P LL LDEP +GL+ + +++
Sbjct: 138 GLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 176 QDIAEAGKTVV 186
+++ + G +
Sbjct: 193 RELRDRGGVTI 203
|
Length = 250 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 26/221 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 63
L GI GE++AL+GP+G+GK+TL +G +++PT G + P Y K
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPT-SGEVLIKGEPIKYDKKSLLE 75
Query: 64 LKSKIGFVTQ--DDVLF-PHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLER 119
++ +G V Q DD LF P TV+E + + L L L K++ EKR + + +G+E
Sbjct: 76 VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLS----KEEVEKRVKEALKAVGMEG 129
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
++ +SGG++KRV I + + P ++ LDEPTSGLD A +I+++L D+
Sbjct: 130 FENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 180 EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 219
+ G T++ + H L + DK+ ++ G ++ G E
Sbjct: 185 KEGITIIISTHDVD--LVPVYADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 30/230 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------------ 56
+L+G+ SV GE +AL+GPSGSGK+T+L +L +EP G I
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 57 -----DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 111
D + + +++KIG V Q LFPH TV + +T A +L L + + + EKRA+++
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMEL 130
Query: 112 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
++ +GL D +SGG+++RV I + + P ++ DE TS LD +
Sbjct: 131 LDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 172 VQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 219
+ +++ +A E T++ H+ +F D++ KG ++ GK E
Sbjct: 186 LNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-23
Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYSK 62
L IT GE L L+GPSG+GK++L LNLL SG L G ++ P K
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IAGNHFDFSKTPSDK 75
Query: 63 S---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ L+ +G V Q L+PHLTV+E L A L L+K Q RA ++ L L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKP 133
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
D + +SGG+++RV I +++ P +L DEPT+ LD +IV +++++A
Sbjct: 134 YAD-----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 180 EAGKTVVTTIHQ 191
E G T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSKSL-----KSKIGFVTQ 73
+ AL GPSGSGKT+L+N+++G L P G I N K + K +IG+V Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAG-LTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 133
D LFPH TV+ L Y + + + + + + LG+E D +
Sbjct: 84 DARLFPHYTVRGNLRYGM------WKSMRAQFDQLVAL---LGIEHLLDRY-----PGTL 129
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193
SGGE++RV IG ++ P LL +DEP + LD I+ L+ + + + +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 194 SRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ D++++L G + G E
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-23
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 66
+ G++ V GE+ L+GP+G+GKTT + +L+ L++PT G T H + ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-LLKPT-SGRATVAGHDVVREPREVRR 73
Query: 67 KIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+IG V QD + LT E L +A L +P ++ R ++++ +GL D +
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE----RIDELLDFVGLLEAADRL- 128
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKT 184
V+ SGG R+R+ I ++ P +LFLDEPT GLD T + + ++ + E G T
Sbjct: 129 ----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 185 VVTTIH 190
++ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-23
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 35/207 (16%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 66
D+L+ ++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N P SK L S
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPT-SGDVIFNGQPMSK-LSSA 79
Query: 67 --------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
K+GF+ Q L P T E A+ L + RA++++ +GLE
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLE 136
Query: 119 RCQDTMIGGSFVRG------VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
R +SGGER+RV I ++ NP L+ DEPT LD+ A I
Sbjct: 137 H-----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 173 QMLQDIAEAGKT---VVTTIHQPSSRL 196
Q+L ++ T VVT Q + R+
Sbjct: 186 QLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL--KS 66
L+G++ + GE L+GPSG GKTTLL L++G PT G I + + K
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPT-SGEILLDGKDITNLPPHKR 72
Query: 67 KIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+ V Q+ LFPHLTV E + + L +LP K ++ A+D++ G
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-ERVAEALDLVQLEGYAN------ 125
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+SGG+++RV I ++ P +L LDEP LD
Sbjct: 126 --RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 19 PG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIG 69
PG V A+ G SGSGKTTL+ L++G L P G I N S K +IG
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG-LTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIG 126
+V Q+ LFPHL+V+ L Y + + + +R I VI LG+ +
Sbjct: 79 YVFQEARLFPHLSVRGNLRYG--------MKRARPSERRISFERVIELLGIGH-----LL 125
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 185
G +SGGE++RV IG ++ +P LL +DEP + LD I+ L+ + AE G +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ H L D++++L G + G +E A
Sbjct: 186 LYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 4e-23
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 67
L+ + V G ++AL+GPSGSGK+TLL +++G L +P G I N D + K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPD-SGRIRLNGQDATRVHARDRK 73
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
IGFV Q LF HLTV++ + + +R + + + EL LE Q +G
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-------VEEL-LELVQLEGLGD 125
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVV 186
+ +SGG+R+RV + + + P +L LDEP LD+ + L+ + + T V
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
H + D+++++ G + G E
Sbjct: 186 FVTHDQEEAM-EVADRIVVMSNGKIEQIGSPDE 217
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 4e-23
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 23/227 (10%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 62
+ +L+G++ + PGEVLA++GP+G+GK+TLL LSG + P G +T N P + +
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LSPD-SGEVTLNGVPLNSWPPE 71
Query: 63 SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L + Q+ L FP TV+E + + R+P+ ++ +E I L
Sbjct: 72 ELARHRAVLPQNSSLAFP-FTVQEVV---QMGRIPHRSGREPEEDER---IAAQALAATD 124
Query: 122 DTMIGGSFVRGVSGGERKRV------CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
+ + G R +SGGE++RV + + LFLDEPTS LD +++
Sbjct: 125 LSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 221
+ +A G V+ +H + L ++ D+++LL +G ++ G + +
Sbjct: 185 RQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 4e-23
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 61
+K LN ++ P E+ AL+GPSGSGK+TLL N ++ E T+ GSI YN H YS
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 62 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ +IG V Q FP +++ E + Y LRL K K+K+ +D E
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRL-----KGIKDKQVLDEAVEKS 128
Query: 117 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166
L +R D+ +G +SGG+++RVCI + +P ++ LDEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALG------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225
+A +I + L + + +VT Q +SR+ D+ G L+ +
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRI---SDRTGFFLDGDLIEYND--------- 230
Query: 226 SIGCSPQIAMNPA 238
+ Q+ MNP
Sbjct: 231 ----TKQMFMNPK 239
|
Length = 252 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 4e-23
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KS 63
+ +IL+ ++ + GE++AL G +G+GKTTL +L+G L++ + GSI N P K
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKES-SGSILLNGKPIKAKE 68
Query: 64 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ IG+V QD LF +V+E L LL L ++ A V+ +L L +
Sbjct: 69 RRKSIGYVMQDVDYQLFTD-SVREEL----LLGLKELDAGNEQ---AETVLKDLDLYALK 120
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ +SGG+++R+ I ++ LL DEPTSGLD R+ ++++++A
Sbjct: 121 E-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 182 GKTVVTTIH 190
GK V+ H
Sbjct: 176 GKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
L ++ GE +A++G SGSGK+TLL LL+G GSIT N + ++L
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQAL 410
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ I +TQ LF T+++ L A P+ ++ + ++GLE+ ++
Sbjct: 411 RETISVLTQRVHLFSG-TLRDNLRLAN----PDASDEE-----LWAALQQVGLEKLLESA 460
Query: 125 IGGSFV------RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
G R +SGGER+R+ + ++ + L LDEPT GLD T +++ +L +
Sbjct: 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
AE GKT++ H+ R + D++I+L G ++ G +E +A
Sbjct: 521 AE-GKTLLMVTHR--LRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 6e-23
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
E ++L G++ N G+V++++G SGSGK+T L ++ +E GSI N +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGSIVVNGQTINLVRD 74
Query: 62 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 108
+ L++++ V Q L+ H+TV E + A + L L+KQ+ +RA
Sbjct: 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERA 132
Query: 109 IDVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
+ + ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 133 VKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 168 ALRIVQMLQDIAEAGKTVVTTIHQ 191
+++++Q +AE GKT+V H+
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-23
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 66
+N ++ V GE+ +MG SGSGK+TLL ++ RL+EPT G + + + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPT-SGKVLIDGQDIAAMSRKELR 97
Query: 67 -----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
KI V Q L PH TV E + + ++ + + ++E+RA + + +GLE +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 178
+ +SGG ++RV + + ++P +L +DE S LD I + +QD
Sbjct: 155 H-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL----IRREMQDELLR 205
Query: 179 --AEAGKTVVTTIH 190
AE KT+V H
Sbjct: 206 LQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 9e-23
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---S 66
L+ ++ +V PG +AL+GP+G+GK+TL +LL+ + G I+ H ++ + +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE--GQISVAGHDLRRAPRAALA 74
Query: 67 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 124
++G V Q L L+V++ L Y AAL L + + R +++ LGL ER
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----RAEARARIAELLARLGLAER----- 125
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 183
VR ++GG R+RV I ++ P+LL LDEPT GLD + I ++ + G
Sbjct: 126 -ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 184 TVVTTIH-----QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+V+ H + D+L++L +G +L G A+E
Sbjct: 185 SVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 9e-23
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYS 61
L IT GE L L+GPSG+GK++L LNLL SG L +I N +S
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-------NIAGNHFDFS 69
Query: 62 K--------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
K L+ +G V Q L+PHLTV++ L A L L+K Q RA ++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLE 127
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
L L+ D F +SGG+++RV I +++ P +L DEPT+ LD +IV
Sbjct: 128 RLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 174 MLQDIAEAGKTVVTTIHQ 191
+++++AE G T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRLMEPTVGGSITYNDHPY 60
+L+ I +++ GEV+ ++GPSGSGK+TLL N L SG L+ V G +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVNDPKVD 71
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGL-E 118
+ ++ + G V Q LFPHLT E + + L +R +K++ EK+A +++ ++GL E
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR---GASKEEAEKQARELLAKVGLAE 128
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
R + +SGG+++RV I + + P L+ DEPTS LD +++++QD+
Sbjct: 129 R------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 179 AEAGKTVVTTIHQ 191
AE G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-22
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L ++ +++PGEV AL+GPSGSGK+T++ LL +P GG + + P S K L
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQPQ-GGQVLLDGKPISQYEHKYL 86
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
SK+ V Q+ VLF ++++ + Y + + ++ A I+EL +
Sbjct: 87 HSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG 145
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
GS +SGG+++RV I +I NP +L LDE TS LD+ + ++ Q L D E +T
Sbjct: 146 EKGSQ---LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RT 201
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSL 211
V+ H+ S + D++++L G +
Sbjct: 202 VLVIAHRLS--TVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-22
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP- 59
E +L ++ S+ PGE LA++GPSGSGK+TL L+ G L+ PT G + +
Sbjct: 9 RYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG-LLRPT-SGRVRLDGADI 66
Query: 60 ---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L +G++ QDD LF ++ E N L
Sbjct: 67 SQWDPNELGDHVGYLPQDDELFSG-SIAE-----------NIL----------------- 97
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
SGG+R+R+ + + NP +L LDEP S LD + Q +
Sbjct: 98 -----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
+ AG T + H+P D++++L G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-22
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
K L I ++ GE+L ++GPSG GKTTLLNL++G + GSIT + P
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG-FVPYQ-HGSITLDGKPVEGPGAE 71
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+ G V Q++ L P V++ + + L+L + K Q+ + A ++ ++GLE
Sbjct: 72 R-GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEG-----AE 122
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 185
++ +SGG+R+RV I + NP LL LDEP LD+ T ++ +L + E GK V
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 186 VTTIHQPSSRLFHKFDKLILLGKG 209
+ H +F + L+LL G
Sbjct: 183 LLITHDIEEAVFMATE-LVLLSPG 205
|
Length = 255 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 62
++ L+ ++ G ++ +GP+G+GK+T + +++G L P GS+ K
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
++ IG++ + + L+ + V+E L + A + + L KQ+ E+ +I +GL Q
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQ 127
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
IG +S G R+RV + +I +P +L LDEPT+GLD + I ++++I +
Sbjct: 128 HKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 182 GKTVVTTIH 190
KT++ + H
Sbjct: 183 -KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 28/225 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-L 64
+L G++ + GE +AL+G +G GK+TLL LL+ R +P G I N P YS++ L
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ-QGEILLNGQPIADYSEAAL 412
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ I V+Q LF T+++ L AA ++ I+V+ ++GLE+ +
Sbjct: 413 RQAISVVSQRVHLFSA-TLRDNLLLAA---------PNASDEALIEVLQQVGLEKLLEDD 462
Query: 125 IG-----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
G G R +SGGE++R+ I ++ + LL LDEPT GLD+ T +I+++L + A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 180 EAGKTVVTTIHQPSSRLF--HKFDKLILLGKGSLLYFGKASEAMA 222
KTV+ H RL +FD++ ++ G ++ G E +A
Sbjct: 523 -QNKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQELLA 562
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYN 56
+K L GI+ S+ GE LA++GPSGSGK+TL L+ G + P GS+ ++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWD 386
Query: 57 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDV 111
+ K IG++ QD LFP TV E + R ++ K ++
Sbjct: 387 RETFGKH----IGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHEL 436
Query: 112 INELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
I L L DT+IG G+ +SGG+R+R+ + + +P L+ LDEP S LD
Sbjct: 437 I--LRLPDGYDTVIGPGGA---TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 170 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224
+ ++ + G TVV H+PS L DK+++L G + FG+ E +A
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 3e-22
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHP--YSK 62
+N ++ GE+ +MG SGSGK+T + +L+ RL+EPT G G P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ KIG V Q LFPH+T+ + + LL P +Q+++++A++++ +GLE +
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----EQERKEKALELLKLVGLEEYE 123
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 180
+ +SGG ++RV + + P +L +DE S LD + L+ + A
Sbjct: 124 H-----RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 238
KT+V H + D+++++ G ++ +G +I NPA
Sbjct: 179 LQKTIVFITHDLDEAI-RIGDRIVIMKAGEIV-------------QVGTPDEILRNPA 222
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
++ L+ I+ + PGE +AL+G SGSGK+TL+NL+ R EP G I + H +
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP-RFYEPD-SGQILLDGHDLADY 399
Query: 62 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINEL--G 116
SL+ ++ V+QD VLF T+ + Y + + + A D +++L G
Sbjct: 400 TLASLRRQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
L DT IG + V +SGG+R+R+ I ++ + +L LDE TS LD+ + + L+
Sbjct: 459 L----DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + G+T + H+ S+ K D+++++ G ++ G +E +A
Sbjct: 514 RLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 4e-22
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 21/185 (11%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK--IGFVTQ 73
+V GE++A+MGPSG+GK+TLLNL++G +EP GSI ND ++ + + + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAG-FIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 74 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132
++ LF HLTV++ + L P L +Q+EK +D ++G+ D +
Sbjct: 78 ENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEK-VVDAAQQVGIADYLDRLPE-----Q 128
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 188
+SGG+R+RV + ++ +L LDEP S LD LR +ML + E +T++
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDP--LLR-EEMLALVKQLCSERQRTLLMV 185
Query: 189 IHQPS 193
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 38/229 (16%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN-LLSGRLMEPTVGGSITYNDHPYS 61
+L I+ S+ PGE + ++G +GSGK++LL L RL+E + GSI + S
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF--RLVELS-SGSILIDGVDIS 69
Query: 62 K----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
K L+S+I + QD VLF T++ L P + ++ + +GL
Sbjct: 70 KIGLHDLRSRISIIPQDPVLFSG-TIRSNLD-------PFG---EYSDEELWQALERVGL 118
Query: 118 -ERCQ------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
E + DT++ GG +S G+R+ +C+ ++ +L LDE T+ +D T
Sbjct: 119 KEFVESLPGGLDTVVEEGGEN---LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 169 LRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFG 215
I + +++ A TV+T H RL D++++L KG ++ F
Sbjct: 176 ALIQKTIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 9e-22
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVL 77
GE+ A++GPSGSGK+TLLNL++G E G + N D + + + Q++ L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81
Query: 78 FPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR---GV 133
F HLTV++ + L P LT + ++ AI+V L R + G R +
Sbjct: 82 FAHLTVEQNV---GLGLSPGLKLTAEDRQ--AIEVA----LAR---VGLAGLEKRLPGEL 129
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQP 192
SGGER+RV + ++ + +L LDEP + LD ++ ++ D+ AE TV+ HQP
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 193 SSRLFHKFDKLILLGKGSLLYFG 215
+++ L G + G
Sbjct: 190 EDAK-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-21
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 51/210 (24%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS 61
+E+ +L ++ + GE +AL+G SGSGK+TLL LL+G L G IT + P
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ--GEITLDGVPVSDLE 70
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K+L S I + Q P+L + LR N LG
Sbjct: 71 KALSSLISVLNQR----PYL-------FDTTLR------------------NNLG----- 96
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
R SGGER+R+ + ++ + ++ LDEPT GLD T +++ ++ ++ +
Sbjct: 97 ---------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
KT++ H + DK++ L G +
Sbjct: 147 DKTLIWITHHLTG--IEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-21
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 28/233 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSK 62
+K +++G++ V GE L+GP+G+GKTT L +L G L P GSI+ P ++
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPD-AGSISLCGEPVPSRAR 76
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ ++G V Q D L P TV+E L Y L + ++ LE
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-------SAAAARALVPPLLEFAKLE 129
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
D V +SGG ++R+ + ++ +P +L LDEPT+GLD + + L+ +
Sbjct: 130 NKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 179 AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 229
GKT++ T H + + RL +L ++ +G + G + S IGC
Sbjct: 185 LARGKTILLTTHFMEEAERLCD---RLCVIEEGRKIAEGAPHALIE--SEIGC 232
|
Length = 306 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-21
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 18/208 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
ILN I+ SV GE +A+ GPSG GK+TLL +++ L+ PT G++ + S ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDVSTLKPEAY 75
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ ++ + Q LF TV++ L + +R ++ A+D++ L
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL----PDS 125
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 183
I + +SGGE++R+ + + P +L LDE TS LD + I +M+ + E
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSL 211
V+ H + H DK+I L G
Sbjct: 186 AVLWITHDKDQAIRH-ADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-21
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 61
EK+ L I + +V AL+GPSG GK+TLL N ++ + + G + ++ Y
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 62 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
K L+ ++G V Q FP +++ + + Y RL K++ ++ + + +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 117 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
L + +D + + G+SGG+++R+CI + + P +L LDEPTS LD +I +++
Sbjct: 130 LWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 176 QDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 216
Q++ + T+V H Q ++R+ D+ G L+ +G
Sbjct: 188 QELKKK-YTIVIVTHNMQQAARI---SDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-21
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 25/184 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYS 61
++ I+ ++ PGE L L+G SGSGK+T LL L++ + G I ++ P
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLH 350
Query: 62 K-------SLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
++ +I V QD L P L V + + + P TL+ Q+E++ I V+
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVM 409
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
E+GL+ F SGG+R+R+ I +I+ PSL+ LDEPTS LD T +I+
Sbjct: 410 EEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 173 QMLQ 176
+L+
Sbjct: 466 ALLK 469
|
Length = 529 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 61
IL G+ V GE +AL+G SGSGK+TLL +L SG + VG + D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--LVGQPLHQMDEEAR 82
Query: 62 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
L++K +GFV Q +L P L E + ALLR + +Q A ++ +LGL +
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES---SRQSRNGAKALLEQLGLGKR 139
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 179
D + +SGGE++RV + P +LF DEPT LD T +I +L +
Sbjct: 140 LDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 180 EAGKTVVTTIHQP 192
E G T++ H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-21
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 30/227 (13%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
SS K+IL I+ G + ++GPSG+GK+TL+ L++ RL++PT GSI +
Sbjct: 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLIDPT-EGSILIDGVDIKT 69
Query: 63 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV---INEL 115
L+ KIG V Q LF TVK+ + Y +L K ++ +DV ++ +
Sbjct: 70 IDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPML----------KGEKNVDVEYYLSIV 118
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GL + T V+ +SGGE +RV I + NP +L LDEPTS LD T+ I +++
Sbjct: 119 GLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 176 QDIAEA-GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ TV+ H + + R+ D L KG L+ + K +
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRI---GDYTAFLNKGILVEYAKTYD 218
|
Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 4e-21
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
L+G++ +V PGEV AL+G +G+GK+TL+ +LSG + P G I + P + +L
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG-VYPPD-SGEILIDGKPVAFSSPRDAL 81
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-EKRAIDVINELGLERCQDT 123
+ I V Q+ L P+L+V E + L ++ +RA +++ LGL+ DT
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
+ V +S +R+ V I + + +L LDEPT+ L R+ +++ + G
Sbjct: 142 L-----VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGV 196
Query: 184 TVV 186
++
Sbjct: 197 AII 199
|
Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 4e-21
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP 59
E + L GI+ ++ GE++ +GP+G+GKTT L +LSG L++PT V G + +
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKR-- 88
Query: 60 YSKSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
K +IG V Q L+ L V ++ LL L + +KR ++ L LE
Sbjct: 89 -RKKFLRRIGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLE 144
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
DT VR +S G+R R I ++ P +LFLDEPT GLD I L++
Sbjct: 145 ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 179 -AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 215
E G TV+ T H + L +++++ KG LLY G
Sbjct: 200 NRERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 5e-21
Identities = 56/199 (28%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGS 52
++L G++ N G+V++++G SGSGK+T L N L +G + ++ G
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 53 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ D + L++++G V Q L+ H+TV E + A + L ++K + +RA +
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYL 137
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
++G+ D ++ +SGG+++RV I + + P ++ DEPTS LD ++
Sbjct: 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 173 QMLQDIAEAGKTVVTTIHQ 191
+++QD+AE G+T+V H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 7e-21
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 23/194 (11%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPY 60
L+ + + GE + L+GPSG GKTT L +++G L EPT G G D P
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPP 69
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
I V Q+ L+PH+TV + + + LR + K + ++R +V L +E
Sbjct: 70 KDR---DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHL 123
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-- 178
D + +SGG+R+RV +G I+ P + +DEP S LD+ LR VQM ++
Sbjct: 124 LD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA--KLR-VQMRAELKR 175
Query: 179 --AEAGKTVVTTIH 190
G T + H
Sbjct: 176 LQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 8e-21
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
+L+G++ + PGE +A++GPSGSGK+TLL L+G L + G +T + P S +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL--DPLQGEVTLDGVPVSSLDQDEV 407
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQD 122
+ ++ QD LF TV+E L A L + D + L GL D
Sbjct: 408 RRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL----D 462
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
T++G R +SGGER+R+ + ++ + +L LDEPT LD+ TA +++ L A +G
Sbjct: 463 TVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSG 520
Query: 183 KTVVTTIHQP 192
+TVV H
Sbjct: 521 RTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 8e-21
Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 44/237 (18%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 62
+ +L+ ++ ++ PGEV+A++GP+G+GK+TLL LSG L G + N P +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSPA 72
Query: 63 SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L + + Q L FP TV+E + A+ R P+ L++ + + + ++ L
Sbjct: 73 ELARRRAVLPQHSSLSFP-FTVEEVV---AMGRAPHGLSRAEDDALVAAALAQVDL---- 124
Query: 122 DTMIGGSFVRGVSGGERKRV----------CIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
+ G +SGGE++RV P L LDEPTS LD +
Sbjct: 125 -AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALDLAHQHHV 179
Query: 172 VQMLQDIA-EAGKTVVTTIH------QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+++ + +A E G V+ +H + + D+++LL +G L+ G +E +
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYA-------DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 19/224 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
K ILN ++ S+ G++ AL+GP+G GK+TLL + RL+ P G++ D P S
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ-SGTVFLGDKPISMLSS 71
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ L ++ + Q + +TV+E + Y + L L L+ ++ ++ +E+
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS--AEDNARVNQ----AMEQ 125
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+ + + +SGG+R+R + + + ++ LDEPT+ LD + ++++++++
Sbjct: 126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 180 EAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
GKTVVT +H +SR D L++L G ++ G E M
Sbjct: 186 TQGKTVVTVLHDLNQASRY---CDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 1e-20
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSK 62
+L+ ++ + GE+LAL+G SG GKTTLL ++G + + G I D P+ +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
L + Q+ LFPHL V++ + + + K K A V + L L D
Sbjct: 80 GL----ALLFQNYALFPHLKVEDNVAFGLRAQ------KMPKADIAERVADALKLVGLGD 129
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-- 180
+SGG ++R+ I I I P +L LDEP S LD+ + + + + E
Sbjct: 130 A--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
T++ H L DK ++ G L G
Sbjct: 188 PELTILCVTHDQDDALTLA-DKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 71
+V PGE +AL+GPSG+GK+TLLNLL G ++PT GSI N P + S + +I +V
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLG-FVDPT-EGSIAVNGVPLADADADSWRDQIAWV 401
Query: 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 131
Q LF T+ E + A + + + + + L DT IG
Sbjct: 402 PQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEG-GA 457
Query: 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
G+SGG+ +R+ + + + LL LDEPT+ LD+ T +++ L+ +A+ G+TV+ H+
Sbjct: 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516
Query: 192 PSSRLFHKFDKLILL 206
+ D++++L
Sbjct: 517 LALA--ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-20
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 63
+N + V GE+ +MG SGSGK+TL+ LL+ RL+EPT G I + S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPT-RGEILVDGKDIAKLSAAELR 101
Query: 64 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ KI V Q L PH TV E + + ++ + K ++E+RA++ + +GLE
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 178
D + +SGG ++RV + + +P +L +DE S LD I +QD
Sbjct: 159 D-----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL----IRTEMQDELLE 209
Query: 179 --AEAGKTVVTTIH 190
A+ KT+V H
Sbjct: 210 LQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-20
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHPYSKSLKS 66
L G+ ++ GE ++L+G SG GK+TLLNL+SG L +PT GG I P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRM-- 57
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
V Q+ L P LTV+E + A+ R+ L+K ++ + I +GL D G
Sbjct: 58 ---VVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 185
+SGG ++RV I + I P +L LDEP LD+ T + + L I E TV
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ H L D++++L G G+ E
Sbjct: 169 LMVTHDVDEALLLS-DRVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-- 58
+ +K+IL G+ +V GEV A+MGP+GSGK+TL + G G I ++
Sbjct: 11 VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70
Query: 59 ----PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
P ++ I Q V P +T + L A R + K +
Sbjct: 71 LELSPDERARAG-IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL 129
Query: 115 LGLERCQDTMIGGSFV-RGV----SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
LGL+ F+ R V SGGE+KR I +++ P L LDEP SGLD AL
Sbjct: 130 LGLDE--------EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDAL 180
Query: 170 RIVQM-LQDIAEAGKTVVTTIHQP 192
+IV + + E G+ V+ H
Sbjct: 181 KIVAEGINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 62
L ++ SV GE+ ++G SG+GK+TL+ ++G L PT GS+ + +
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPT-SGSVLVDGTDLTLLSGKELR 78
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ +IG + Q L TV E + L + K + E+R ++++ +GLE D
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALP--LEIAGV-PKAEIEERVLELLELVGLEDKAD 135
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 181
++ +SGG+++RV I + NP +L DE TS LD T I+ +L+DI E
Sbjct: 136 -----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 182 GKTVVTTIHQ 191
G T+V H+
Sbjct: 191 GLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 61
+K L I + +V AL+GPSG GK+TLL N ++ + V G + + Y
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
Query: 62 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ ++G V Q FP +++ + + Y LRL + + +D I E
Sbjct: 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRL------HGIKDKELDEIVESS 129
Query: 117 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166
L +R + G+SGG+++R+CI + + P +L +DEPTS LD
Sbjct: 130 LKKAALWDEVKDRLHKS------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Query: 167 TALRIVQMLQDIAE 180
+ L+I +++ ++ +
Sbjct: 184 STLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 73
+V GE +A++GPSG+GK+TLLNL++G L GS+T N DH + + + + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 74 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132
++ LF HLTV + + L P L Q+EK + ++G+E + G
Sbjct: 79 ENNLFSHLTVAQNI---GLGLNPGLKLNAAQREKLH-AIARQMGIEDLLARLPG-----Q 129
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR--IVQMLQDI 178
+SGG+R+RV + ++ +L LDEP S LD ALR ++ ++ +
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALRQEMLTLVSQV 175
|
Length = 232 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-20
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSK 67
L+ ++ + GE++AL+GPSGSGKTTLL L++G +E G+I + + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSGTILFGGEDATDVPVQERN 75
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLR----LPNTLTKQQKEKRAIDVINELGLERCQDT 123
+GFV Q LF H+TV + + + ++ P + K ++EL L+ Q
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK-------VHEL-LKLVQLD 127
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT--ALR-IVQMLQDIAE 180
+ + +SGG+R+RV + + + P +L LDEP LD+ LR ++ L D E
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--E 185
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
T V H L D+++++ KG + G E
Sbjct: 186 LHVTTVFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-20
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 48/195 (24%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 58
S K+IL G+ ++ GEV ALMGP+GSGK+TL + G G I +
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
Query: 59 --PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
P ++ I Q P + + L Y +NE
Sbjct: 69 LPPEERARLG-IFLAFQYPPEIPGVKNADFLRY----------------------VNE-- 103
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QML 175
G SGGE+KR I +++ P L LDEP SGLD ALR+V +++
Sbjct: 104 ---------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVI 147
Query: 176 QDIAEAGKTVVTTIH 190
+ E GK+V+ H
Sbjct: 148 NKLREEGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 4e-20
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
++G++ S+ GE L L+G SG GK+TL L+ L EPT G I + +K
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPT-SGEILFEGKDITK------ 79
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
L+K+++ +R ++++ ++GL
Sbjct: 80 ------------------------------LSKEERRERVLELLEKVGL----PEEFLYR 105
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ +SGG+R+R+ I + +NP L+ DEP S LD + +I+ +L+D+ E
Sbjct: 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 4e-20
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 19/179 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYS------- 61
++GI+ ++ G+ L L+G SGSGK+TL L LL RL+ G I ++
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ--GEIRFDGQDIDGLSRKEM 358
Query: 62 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ L+ ++ V QD L P +TV + + + P L+ ++++R I+ + E+GL+
Sbjct: 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLD- 416
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
T + SGG+R+R+ I +I+ P L+ LDEPTS LD + +++ +L+D+
Sbjct: 417 -PATR--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
|
Length = 534 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-20
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 16/186 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
++ +N I+ +V V L+GP+G+GK+TLL +++G ++ PT G I ++ HP+++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG-ILRPT-SGEIIFDGHPWTRKDL 69
Query: 66 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
KIG + + L+ +LT +E L + LL LP + R +V+N + L T
Sbjct: 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIVDL-----TN 116
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
G + S G ++R+ I ++ +P LL LDEPT+GLD + ++++ E G T
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 185 VVTTIH 190
V+ + H
Sbjct: 177 VILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-20
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 12/222 (5%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
++K IL GI+ ++ GE L ++GPSGSGK+TL LL G P GS+ + +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWD 404
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
L IG++ QD LF T+ E + P + + + ++I L L +
Sbjct: 405 REQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQG 461
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
DT IG +SGG+R+R+ + + +P L+ LDEP S LDS + +
Sbjct: 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G TVV H+PS DK+++L G + FG E +A
Sbjct: 521 RGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 61
K +L+ ++ + G + +++GP+G+GK+TLL+++S RL++ G IT + S
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKD-SGEITIDGLELTSTPS 70
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLER 119
K L K+ + Q++ + LTV++ + + R P + + KE R I + I L LE
Sbjct: 71 KELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
D ++ +SGG+R+R I + + + LDEP + LD +++I+++L+ +A
Sbjct: 128 LSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 180 -EAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
E GKT+V +H S D ++ L G ++ G E +
Sbjct: 183 DELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-19
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL------ 64
GIT A+ G SG+GKT+L+N +SG L P G I N +
Sbjct: 24 QGIT---------AIFGRSGAGKTSLINAISG-LTRPQKG-RIVLNGRVLFDAEKGICLP 72
Query: 65 --KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
K +IG+V QD LFPH V+ L Y + K + ++ LG+E D
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMVAQFD-KIVALLGIEPLLD 123
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ +SGGE++RV IG ++ P LL +DEP + LD ++ L+ +A
Sbjct: 124 -----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK-----ASEAM 221
+ + + D++++L +G + FG AS AM
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-19
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 16/195 (8%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGS--ITYND 57
E+ ++L GI+ + GE++A++G SGSGK+TL+N+L G L +PT V G T +
Sbjct: 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVAGQDVATLDA 77
Query: 58 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
++ + GF+ Q L HLT + + A+ L ++Q+ RA +++ LGL
Sbjct: 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGL 134
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
E + +SGG+++RV I ++ ++ DEPT LDS + ++ +L
Sbjct: 135 EDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189
Query: 178 IAEAGKTVVTTIHQP 192
+ + G TV+ H P
Sbjct: 190 LRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 34/258 (13%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-- 60
S +K ++NG++ +V GE L+GP+G+GK+T+ ++ G M G IT P
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSPDAGKITVLGVPVPA 107
Query: 61 -SKSLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELG-L 117
++ +++IG V Q D L TV+E L + + ++ + I + E L
Sbjct: 108 RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-----STREIEAVIPSLLEFARL 162
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
E D V +SGG ++R+ + +I +P LL LDEPT+GLD I + L+
Sbjct: 163 ESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 217
Query: 178 IAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAM 235
+ GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 218 LLARGKTILLTTHFMEEAERL---CDRLCVLEAGRKIAEGRPHALID--EHIGCQ----- 267
Query: 236 NPAEFLLDLANGNLHDVS 253
++++ G+ H++S
Sbjct: 268 -----VIEIYGGDPHELS 280
|
Length = 340 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-19
Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 58
S E+K+IL G+ +V GE+ A+MGP+GSGK+TL ++G G+I +
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68
Query: 59 --PYSKSLKSK-IGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKE 105
P ++ + F Q P ++ E L A L L + L K K
Sbjct: 69 LEPDERARAGLFLAF--QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-KLLKA 125
Query: 106 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTS 161
K A+ ++E L R S G SGGE+KR NEI ++ P L LDE S
Sbjct: 126 KLALLGMDEEFLNR--------SVNEGFSGGEKKR----NEILQMALLEPKLAILDEIDS 173
Query: 162 GLDSTTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKAS 218
GLD AL+IV + + + E ++ + H RL + K D + +L G ++ G
Sbjct: 174 GLD-IDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-19
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S + K++++ + ++N GE L L+GPSG GKTT+L L++G P G I + +
Sbjct: 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPD-SGRIMLDGQDITH 80
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+ + V Q LFPH+TV E + + LR+ T + R ++ + + LE
Sbjct: 81 VPAENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKT-PAAEITPRVMEALRMVQLEE- 136
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+SGG+++RV I ++ P +L LDE S LD
Sbjct: 137 ----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-19
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 63
IL G++ V GEV ++G +G GKTTLL L G L P GSI + +K
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPHER 72
Query: 64 LKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINEL--GLERC 120
++ I +V Q +FP LTV+E L T A L ++ ++ D I EL L+
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEM 124
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
GG +SGG+++++ I ++ P LL LDEPT G+ + I ++++ +
Sbjct: 125 LGRR-GGD----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
G + + Q D+ ++ +G ++ G E
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 66
L I+ SV GE + L+GPSG GKTTLL +++G L T G+I ++ K
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQT-AGTIYQGGRDITRLPPQKR 76
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 125
G V Q LFP+LTV + + Y L + + + + EL L+
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--------LKNRGMGRAEVAERVAEL-LDLVGLPGS 127
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
+ +SGG+++RV + + +P LL LDEP S LD+ + ++ + +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLG 185
Query: 186 VTTI 189
VTTI
Sbjct: 186 VTTI 189
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 31/230 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYS 61
+ ILNGI+ ++ G+ +A++G SG+GK+T+L LL R + GSIT +
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQ 332
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINEL- 115
+SL+ IG V QD VLF + T+ + Y T ++ A D I L
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 116 -GLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
G DT +G RG +SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 387 EGY----DTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L++++ AG+T + H+ S+ + D++I+L G ++ G E +A
Sbjct: 440 AALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 66
+LN I+ + G+++AL+GPSGSGKTTLL +++G +E G I ++ S+ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG--LEHQTSGHIRFHGTDVSRLHARDR 74
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
K+GFV Q LF H+TV + + + L LP +++ AI LE Q +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAF-GLTVLPR---RERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165
+ +SGG+++RV + + + P +L LDEP LD+
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-18
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 50/188 (26%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----S 61
K + ++ V GE++ + G G+G+T L L G + P G IT + P
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPR 70
Query: 62 KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
++++ I +V +D + L L+V E + ++LL
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
SGG +++V + + +P +L LDEPT G+D I ++++++
Sbjct: 106 ---------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 179 AEAGKTVV 186
A+AGK V+
Sbjct: 151 ADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-18
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSLKSKIGF 70
+V GE+L + G G+G+T L L G P G I + P ++K+ I +
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338
Query: 71 VTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLERCQDTMI 125
V +D + L +++ E +T A+L R ++++RA+ I L + +
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSP-- 395
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
+ +SGG +++V + + +P +L LDEPT G+D I ++++++A GK +
Sbjct: 396 -EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 186 V 186
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 3e-18
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 62
+K ++N ++ ++ GE L+GP+G+GK+T+ +L G M G IT P ++
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRAR 73
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ IG V Q D L P TV+E L + + + ++ E ++ LE
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKA 129
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
D V +SGG ++R+ + +I +P LL LDEPT+GLD I + L+ +
Sbjct: 130 DVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 182 GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 229
GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 185 GKTILLTTHFMEEAERL---CDRLCVLESGRKIAEGRPHALID--EQIGC 229
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 65
L+G+ +V PGE +AL+GPSG+GK+TL LL R +P G I + L+
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ-SGRILLDGVDLRQLDPAELR 413
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+++ V QD VLF +V E + Y + + A + I L DT +
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFI--SALPEGYDTYL 470
Query: 126 GGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
G RGV SGG+R+R+ I I+ + +L LDE TS LD+ + ++VQ + G+
Sbjct: 471 GE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGR 526
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
T + H+ ++ L K D+++++ +G ++ G +E +A
Sbjct: 527 TTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-18
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 62
EK L IT S+ V AL+GPSG GK+TLL N ++ + + G I YN
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 63 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
S L+ KIG V Q FP ++ E + Y + +K K+ +D I E
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIH-------GEKNKKTLDTIVEKS 129
Query: 117 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166
L +R D+ + +SGG+++R+CI + +NP ++ +DEP S LD
Sbjct: 130 LKGAALWDEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 167 TALRIVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+I +++D+ + TV+ H Q ++R+ + + LGK L+ F K ++
Sbjct: 184 ATAKIEDLIEDLKKE-YTVIIVTHNMQQAARV-SDYTGFMYLGK--LIEFDKTTQ 234
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 4e-18
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 61
+ + L GI N E+ AL+GPSG GK+T L N ++ + T+ G+++ Y+
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 62 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+ L+ ++G V Q FP ++ E + Y LRL K+K +D E
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRL-----AGVKDKAVLDEAVETS 128
Query: 117 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L + +D + + +SGG+++RVCI + + P ++ LDEPTS LD ++ +
Sbjct: 129 LKQAAIWDEVKDHLHESAL--SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQ 186
Query: 171 IVQMLQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 228
I ML ++ + ++ T +HQ +SR+ DK G+L+ F
Sbjct: 187 IENMLLELRDQYTIILVTHSMHQ-ASRI---SDKTAFFLTGNLIEFAD------------ 230
Query: 229 CSPQIAMNPAE 239
+ Q+ +NP E
Sbjct: 231 -TKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 4e-18
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSL 64
+L+G+ SV G ++ L+GP+G+GKTTLL ++G + PT G ++ +++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING-TLTPTAG-TVLVAGDDVEALSARAA 75
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
++ V QD L V++ + R P+ ++ E +ER
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPH-RSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
V +SGGER+RV + + +L LDEPT+ LD +R +++++ + + GKT
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 185 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 221
V IH L ++ D+L+LL G + G ++ +
Sbjct: 192 AVAAIHDLD--LAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-18
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+V +SGG+R+RV + +++NP LL LDEPTSGLD + R++++L+++AE G+TV+
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 188 TIHQPSSRLFHKFDKLILLGKG 209
H P D++I+L G
Sbjct: 136 VTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 4e-18
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 25 LMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSLKSKIGFVTQDDVLFP 79
L+GPSG GKTTLL LL+G +P G G N P+ + I V Q LFP
Sbjct: 1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRH----INMVFQSYALFP 55
Query: 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 139
H+TV+E + + +R K + + V+ L L + ++ +SGG+++
Sbjct: 56 HMTVEENVAFGLKMR------KVPRAEIKPRVLEALRLVQLEE--FADRKPHQLSGGQQQ 107
Query: 140 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFH 198
RV + ++ P +L LDEP S LD ++ L+ I E G T V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 199 KFDKLILLGKGSLLYFGKASE 219
D++ ++ KG + G E
Sbjct: 168 S-DRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 6e-18
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-L 64
+ + +G++ ++ GE L L GP+GSGKTTLL L++G L P G+I + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
++ + + P LTV E L + AA L +E + +GL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPLAHL 123
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
G +S G+++RV + ++ N + LDEPT+ LD+ ++++ G
Sbjct: 124 PFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 184 TVVTTIHQP 192
V+ H P
Sbjct: 179 IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 27/171 (15%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLKSKIGFVT 72
++ GE + +GPSG GK+TLL +++G L + T G G ND P ++ +G V
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAER---GVGMVF 81
Query: 73 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV--INELG--LERCQDTMIGGS 128
Q L+PHL+V E +++ L+L K++ +R V + +L L+R
Sbjct: 82 QSYALYPHLSVAENMSFG--LKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------- 131
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEIS 177
|
Length = 369 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 9e-18
Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 65
I++G+ + PG + L+GP+GSGK+TLL LL+G + P G++ + H S+ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG-ALRPD-AGTVDLAGVDLHGLSRRAR 73
Query: 66 S-KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ ++ V QD LTV++ + AL R+P+ + + + + L R + +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVV---ALGRIPH-RSLWAGDSPHDAAVVDRALARTELSH 129
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
+ + +SGGER+RV + + P LL LDEPT+ LD L + +++++A G T
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 185 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 221
VV +H + L + D +++L G ++ G E +
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK----S 63
L GI ++ GEV A++G +G+GK+TL L+G +++P G I ++ P YS+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKP-SSGRILFDGKPIDYSRKGLMK 79
Query: 64 LKSKIGFVTQ--DDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 120
L+ +G V Q D+ LF +V + +++ A+ L+LP + + KR + + G+E
Sbjct: 80 LRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIEHL 134
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA- 179
+D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++
Sbjct: 135 KDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
E G T++ H + D + ++ +G ++ G E A
Sbjct: 190 ELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 2e-17
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSI------TYN 56
EK + +T + ++ A++GPSG GKTTLL N ++ + V G I Y+
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 57 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+ K+G V Q FP +++ + + + R+ K K +D I E
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGV-----KSKHKLDRIVEES 126
Query: 117 LERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
L++ + G+ +SGG+++R+CI + + P ++ LDEPTS LD
Sbjct: 127 LKKAALWDEVKSELNKPGT---RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 170 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
RI ++L++++E T+V H + D + + +G L+ +G E
Sbjct: 184 RIEKLLEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
+ + +LN ++ S+ GE +AL+G SG GK+TL LL G L P+ G++++ P +
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPS-QGNVSWRGEPLAKL 79
Query: 62 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
K+ + I V QD + + P TV+E + LR +L K ++ RA +++
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRA 137
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+ L D + +SGG+ +RVC+ + + P LL LDE S LD ++++
Sbjct: 138 VDL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 175 LQDIAEAGKTVVTTI-HQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYFSSIGCSPQ 232
L+ + + T I H RL +F +++++ G ++ + + + S G Q
Sbjct: 194 LKKLQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251
Query: 233 IAMNPA 238
A+ PA
Sbjct: 252 NAVLPA 257
|
Length = 268 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL-MEPTV--GGSITYNDHPYSKS--- 63
L I S+ EV A++GPSG GK+T + L+ + M P V G + YN K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 64 ---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 119
L+ IG V Q FP ++ + + Y R+ T K++ ++ + ++ L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+D + + +SGG+++R+CI + NP +L +DEPTS LD + +I +++ +
Sbjct: 145 VKDRLHTQAL--SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 180 EAGKTVVTTIH--QPSSRL 196
E T+V H Q ++R+
Sbjct: 203 EK-YTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 3e-17
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPTVGGSITYNDHPYSKS----- 63
L+ + +++ GE++AL+GPSGSGK+TLL LSG + + + G I +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 64 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 113
++ G++ Q L L+V E + AL P + T++QK+ RA+ +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ-RALQALT 138
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
+G+ V +SGG+++RV I ++ ++ DEP + LD +A ++
Sbjct: 139 RVGMVH-----FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 174 MLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
L+DI + G TVV T+HQ L + ++++ L +G + Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-17
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 46/192 (23%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSK 62
E ++ + ++ PG+ +AL+G SGSGK+T+ L++G L +P G I ++ P +
Sbjct: 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPW-SGEILFDGIPREEIPR 548
Query: 63 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-C 120
L + + V QD LF TV++ LT L + I + L R C
Sbjct: 549 EVLANSVAMVDQDIFLFEG-TVRDNLT------LWD------------PTIPDADLVRAC 589
Query: 121 QDTMI-----------------GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163
+D I GG +SGG+R+R+ I ++ NPS+L LDE TS L
Sbjct: 590 KDAAIHDVITSRPGGYDAELAEGG---ANLSGGQRQRLEIARALVRNPSILILDEATSAL 646
Query: 164 DSTTALRIVQML 175
D T I L
Sbjct: 647 DPETEKIIDDNL 658
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 4e-17
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
+ ++ SV GE+ AL+G +G+GK+TL+ +L G L +P G I + ++
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFG-LYQPD-SGEIRVDGKEVRIKSPRDAI 77
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ IG V Q +L P LTV E + + ++Q R ++ GL D
Sbjct: 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-- 135
Query: 125 IGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ V +S GE++RV EI+ LL LDEPT+ L A + ++L+ +A
Sbjct: 136 ---AKVADLSVGEQQRV----EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188
Query: 181 AGKTVV 186
GKT++
Sbjct: 189 EGKTII 194
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKT----TLLNLLSGRLMEPTVGGSITYND 57
+ + GI+ + GE LAL+G SGSGK+ ++L LL GSI ++
Sbjct: 18 QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG 76
Query: 58 HPYSKSLKS--------KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKR 107
+ + KIG + Q+ + L P T+ + L A +LRL L++ R
Sbjct: 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARAR 134
Query: 108 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
A++++ +G+ + + ++ +SGG+R+RV I + P LL DEPT+ LD T
Sbjct: 135 ALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 168 ALRIVQMLQDI-AEAGKTVVTTIH 190
+I+ +L+++ AE G ++ H
Sbjct: 193 QAQILDLLKELQAELGMAILFITH 216
|
Length = 534 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 5e-17
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYN-DHPYS 61
EK LN I + ++ AL+GPSG GK+T L N ++ + + G + + + Y
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 62 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
K L+ ++G V Q FP +++ + + Y R+ K+K+ +D I E
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGI-----KDKKELDKIVEWA 127
Query: 117 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L++ +D + + +SGG+++R+CI I + P ++ +DEPTS LD + L+
Sbjct: 128 LKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 171 IVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 219
I ++ ++ + V+ T + Q +SR+ + L+G L+ F K +
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQASRV-SDYTAFFLMGD--LIEFNKTEK 232
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 6e-17
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTV--GGSITYN----- 56
E L I ++ EV A++GPSG GK+T + L+ R++E P+V G I Y
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIF 94
Query: 57 DHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
D YS L++ +G V Q FP ++ + +TY P K+K+ +D I E
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-----PKI--HGIKDKKTLDEIVEK 146
Query: 116 GL------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
L + +D + ++ G+SGG+++R+CI + I P ++ +DEPTS LD + L
Sbjct: 147 SLRGAAIWDELKDRLHDNAY--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 170 RIVQMLQDIAEAGKTVVTT 188
++ +++Q++ + ++ T
Sbjct: 205 KVEELVQELKKDYSIIIVT 223
|
Length = 271 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 9e-17
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
+ +L ++ S+ GE + L+G SG GK+TL LL G L +P G++++
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPA-QGTVSFRGQDLYQL 78
Query: 62 -----KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
++ + + V QD + P +TV++ + LR +L + +++ R ++++
Sbjct: 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDM 136
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+GL + R +SGG+ +R+ I + + P L+ LDE S LD I+++
Sbjct: 137 VGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 212
L+ + +A T I RL F ++ ++ KG ++
Sbjct: 193 LRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 9e-17
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT----------Y 55
+K + + V G V AL+GPSG GKTT L ++ R+ + T G +T Y
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIY 74
Query: 56 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+++ ++G V Q FP ++V + + A L+L + + A +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 116 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L + +D + + G+SGG+++R+CI + + P +L +DEPTS LD + RI +
Sbjct: 133 ALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 175 LQDIAEAGKTVVTT--IHQPS 193
+ D+ + ++ T +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 36/194 (18%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPY 60
+ ++ PG+ +A++GP+G+GK+TL+NLL R+ +P G ++T
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTR----- 404
Query: 61 SKSLKSKIGFVTQDDVLF-----PHLTV-KETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
SL+ I V QD LF ++ V + T + + +A D I
Sbjct: 405 -ASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRA-------AAERAQAHDFI-- 454
Query: 115 LGLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
DT++G RG +SGGER+R+ I ++ +P +L LDE TS LD T ++
Sbjct: 455 ERKPDGYDTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511
Query: 173 QMLQDIAEAGKTVV 186
L ++ + T +
Sbjct: 512 AALDELMKGRTTFI 525
|
Length = 588 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-16
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 75
S + GE+L L+GP+G+GKTTLL + G + P G++ K IG+V Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKG-WRHIGYVPQRH 58
Query: 76 VL---FP----HLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGG 127
FP H + + LR P + A+ D + +GL D +G
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRP-----CVADFAAVRDALRRVGLTELADRPVG- 112
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+SGG+R+RV + + PS+L LDEP +GLD T + ++ ++A AG ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 188 TIHQPSSRLFHKFDKLILL 206
T H + + D+++LL
Sbjct: 169 TTHDLAQAM-ATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
E+ + G++ ++N GE L + GP+G GKTTLL +L+G L+ P G + +N ++
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPD-SGEVRWNGTALAEQRD 69
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAI-DVINELGLERC 120
I ++ L P L+ E L +AA+ +R I D + +GL
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIH---------GGAQRTIEDALAAVGLTGF 120
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+D +S G+++R+ + + L LDEPT+ LD + +L+
Sbjct: 121 EDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 181 AGKTVVTTIHQP 192
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-----PTVGGSITYNDHP 59
+K IL IT + + +MGPSGSGK+TLL +L+ RL+E V G + Y
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKD 79
Query: 60 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVIN 113
+ L+ ++G V Q FPHL++ + + Y L + K+++E + I + +
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECLR 135
Query: 114 ELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
++GL + D + S +SGG+++R+ I + + P +L +DEPTS +D + I
Sbjct: 136 KVGLWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+++ ++ +V H P ++ D + L G L+ +G ++E
Sbjct: 194 KLITELKNE-IAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSI---TYNDH 58
+L ++ +VN GE +AL GPSG+GK+TLL L SGR++ G + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 59 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 117
+ + IG+V+Q + P ++ E + L R + ++ RA +++ L +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIP 139
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
ER + +F SGGE++RV I I + +L LDEPT+ LD+ +V+++ +
Sbjct: 140 ERLWH-LPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 178 IAEAGKTVVTTIHQPSSR 195
G ++ H R
Sbjct: 195 AKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
+ +L ++ ++NPGE + L+G +G+GK+TLL +L+G L EP G +T
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPD-SGEVTR-PKGL------ 66
Query: 67 KIGFVTQDDVLFPHLTVKETLT------YAALLRLP--------------NTLTKQQKEK 106
++G+++Q+ L P TV + + L L L +E
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 107 -------RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159
RA + + LG + S SGG R+RV + ++ P LL LDEP
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPV--SSL----SGGWRRRVALARALLEEPDLLLLDEP 180
Query: 160 TSGLD 164
T+ LD
Sbjct: 181 TNHLD 185
|
Length = 530 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 3e-16
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-------TYNDHPYSKSLKSKI 68
++ GE+ +MG SGSGK+T++ LL+ RL+EPT G + +D + + KI
Sbjct: 50 AIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
V Q L PH+TV + + + L ++++EK A+D + ++GLE S
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREK-ALDALRQVGLEN-----YAHS 160
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 188
+ +SGG R+RV + + INP +L +DE S LD + L + + +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 189 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
I D++ ++ G ++ G E +
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 31/227 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITY-NDHPYSK--- 62
L I + +V AL+GPSG GK+T L L+ L+ + G + Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--- 117
L+ ++G V Q FP +++ + + Y P T K+K+ +D I E L
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-----PRT--HGIKDKKKLDEIVEKSLKGA 130
Query: 118 ---ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+ +D + + G+SGG+++R+CI + + P +L +DEPTS LD + L+I ++
Sbjct: 131 ALWDEVKDRLKKSAL--GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 175 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+Q++ + T+V H Q +SR+ DK G ++ FG +
Sbjct: 189 IQEL-KKDYTIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVD 231
|
Length = 250 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKI- 68
++ V GE+L L+GP+G+GK+TLL ++G L GSI + P +S + ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
+++Q + V + LT L P+ + +V LGL D + G
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGL---DDKL--GR 122
Query: 129 FVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
V +SGGE +RV + ++ INP+ LL LDEP + LD + ++L ++ +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
G VV + H + D++ LL +G LL G+ E +
Sbjct: 183 GIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
EK LNG++ + G+ + ++G +G+GK+TLLN ++G L PT G I + +K
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PT-SGQILIDGVDVTKKS 74
Query: 65 KSK----IGFVTQD--DVLFPHLTVKETLTYAAL--------LRLPNTLTKQQKEKRAID 110
+K + V QD P LT++E L A L +E+ A
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA-- 132
Query: 111 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
LGLE IG +SGG+R+ + + + P +L LDE T+ LD TA
Sbjct: 133 -RLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 171 IVQMLQDIAEAGK-TVVTTIH 190
++++ I E K T + H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-16
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYN-----DHPYSKS 63
L+ ++ +N GE++ L+G +G+GKTTLL L G +P G I ++ D +K
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQTAKI 77
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-- 121
++ + V + +F +TV+E L Q++ K ++ L R Q
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRA 135
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
TM SGGE++ + IG ++ P LL LDEP+ GL +I ++ + E
Sbjct: 136 GTM---------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 182 GKTV 185
G T+
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L+ + V PGE L + G SG+GKT+LL L+G + P G I+ S +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPAD-------SAL 458
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-G 127
F+ Q P T++E L Y PN + + V++++GL + +
Sbjct: 459 LFLPQR-PYLPQGTLREALCY------PNAAPDFS-DAELVAVLHKVGLGDLAERLDEED 510
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+ R +SGGE++R+ ++ P +FLDE TS LD T R+ Q+L++ TV++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVIS 569
Query: 188 TIHQPSSRLFHKFDKLILLGKGS 210
H+P+ FH +L LL
Sbjct: 570 VGHRPTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (191), Expect = 9e-16
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK---SKIG 69
V G AL+G +GSGK+TLL L+G L++PT G G I + K +K K+G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERCQDTMIGG 127
V Q FP + E + P + K++ EK A + + +GL +
Sbjct: 88 VVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKS 141
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
F +SGG+ +RV I + + P +L LDEPT+GLD + ++Q+ + I ++G+TVV
Sbjct: 142 PF--ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 188 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
H + D + LL KG ++ G S+
Sbjct: 200 VTHLMDDVADYA-DYVYLLEKGHIISCGTPSD 230
|
Length = 288 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG----SITYNDH 58
+ E + L ++ +N GE +A++G +GSGK+T+ +L+G L++P G IT +
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-LLKPQSGEIKIDGITISKE 76
Query: 59 PYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVINELG 116
+ ++ KIG + Q+ D F TV++ + + L N +K K I D+ ++G
Sbjct: 77 NLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPPKKMKDIIDDLAKKVG 131
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+E D + +SGG+++RV I + + +NP ++ DE TS LD I +++
Sbjct: 132 MEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186
Query: 177 DIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
D+ + KT+++ H + DK+I+ +G L+ GK E
Sbjct: 187 DLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 25/226 (11%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
E L I+ + GE + ++G +G+GK+TLL L++G + +PT G +
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPT-SGKVKVT-----GK 89
Query: 64 LKSKIGFVTQDDVLF-PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ I F P LT +E + L+ LT+++ +++ ++I L D
Sbjct: 90 VAPLIEL----GAGFDPELTGRENIYLRGLI---LGLTRKEIDEKVDEIIEFAELGDFID 142
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
V+ S G R+ + P +L LDE + D+ + ++ L ++ E
Sbjct: 143 QP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 183 KTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226
KT+V H + D+ I L G + G E + +
Sbjct: 198 KTIVLVSHDLGAIKQY---CDRAIWLEHGQIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDH-------- 58
L+ ++ +N GE +A++G +GSGKTT + L+ L+ T G+I + ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT--GTIEWIFKDEKNKKKTKEK 80
Query: 59 -----------PYSKSLKS------KIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTL 99
K +K ++G V Q + LF T+++ + + + +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPV---SMGV 136
Query: 100 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159
+K++ +KRA I +GL+ + + F +SGG+++RV + + + P L DEP
Sbjct: 137 SKEEAKKRAAKYIELVGLD--ESYLQRSPF--ELSGGQKRRVALAGILAMEPDFLVFDEP 192
Query: 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
T+GLD I+++ ++ + GKT++ H
Sbjct: 193 TAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG----------SITYNDHP 59
++ ++ V GE+ ++G SG+GKTTL +++G ++EPT G +T
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPD 358
Query: 60 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
K IG + Q+ L+PH TV + LT A L LP+ L + +A+ + +G +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR----MKAVITLKMVGFDE 414
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDI 178
+ I + +S GER RV + +I P ++ LDEPT +D T + + +L+
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 179 AEAGKTVVTTIH 190
E +T + H
Sbjct: 475 EEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSI------TYNDH 58
++ G+ + V ALMGPSG GK+TLL + RL+E V G + Y+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 59 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 117
++ ++G V Q FPHLT+ + + L N L K +KE +D E L
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL---NGLVKSKKE---LDERVEWALK 131
Query: 118 -----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+ +D + + +SGG+R+R+ I + + P +L +DEPT+ +D +I
Sbjct: 132 KAALWDEVKDRL--NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 173 QMLQDIAEAGKTVVTTIHQPS 193
++L ++ + T+V H P+
Sbjct: 190 ELLFELKKE-YTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
+ ++L+ + + PGE + ++GPSGSGK+TL LL RL P G + + +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHG-QVLVDGVDLAIAD 525
Query: 63 --SLKSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRA 108
L+ ++G V Q++VLF P E + +AA L A
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKL------------AGA 572
Query: 109 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
D I L + +T +G +SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 573 HDFI--SELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 169 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
I++ +++I G+TV+ H+ S+ D++I+L KG + G+ E +A
Sbjct: 630 ALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSL 64
EK L+ + + GE + L+G +GSGK+TL+ L+G L++PT G I + K +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG-LLKPT-SGKIIIDGVDITDKKV 76
Query: 65 K-----SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGL 117
K K+G V Q +P + E + P L ++++ E R +N +GL
Sbjct: 77 KLSDIRKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 118 ERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ + S F +SGG+++RV I + + P +L LDEPT+GLD I+ ++
Sbjct: 133 DY--EDYKDKSPF--ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 177 DIAEAGK-TVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEA---MAYFSSIGCS- 230
++ + T++ H S K D++I++ KG G E + SIG +
Sbjct: 189 ELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAV 246
Query: 231 PQI 233
PQ+
Sbjct: 247 PQV 249
|
Length = 287 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
IL+ ++ + PGE +A++GPSGSGK+TLL LL G E GS+ Y+ + ++
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG--FETPESGSVFYDGQDLAGLDVQAV 525
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 122
+ ++G V Q+ L ++ E + A L L A + GL +D
Sbjct: 526 RRQLGVVLQNGRLMSG-SIFENIAGGAPLTL----------DEAWEAARMAGLA--EDIR 572
Query: 123 -------TMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
T+I GG +SGG+R+R+ I ++ P +L DE TS LD+ T
Sbjct: 573 AMPMGMHTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 3e-15
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIG 69
++ GE+ AL+G SG GK+TLL +L+G E G I + PY + I
Sbjct: 41 TIYKGEIFALLGASGCGKSTLLRMLAG--FEQPTAGQIMLDGVDLSHVPPYQRP----IN 94
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVINE-LGLERCQDTMIG 126
+ Q LFPH+TV++ + + KQ K +A +NE LGL Q+
Sbjct: 95 MMFQSYALFPHMTVEQNIAFG---------LKQDKLPKAEIASRVNEMLGLVHMQE--FA 143
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 185
+SGG+R+RV + + P LL LDEP LD R+ + DI E G T
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 186 VTTIH 190
V H
Sbjct: 204 VMVTH 208
|
Length = 377 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-15
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHP 59
+ + + +G++ ++ GE L + GP+GSGKTTLL +L+G L P G + N
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPL-AGRVLLNGGPLDF 66
Query: 60 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
S+ + ++ + L+V E L + + +Q +E A+ + G E
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH----ADHSDEQVEE--ALARVGLNGFED 120
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
V +S G+++RV + ++ L LDEPT+ LD R + +
Sbjct: 121 RP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 180 EAGKTVVTTIHQP 192
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 65
PGEVL ++G SGSGKTTLL +SGRL P G++TY Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLT-PD-AGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 66 SKIGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
++ GFV Q+ D L ++ + E L N + Q + E+ L+R
Sbjct: 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV----EIDLDR 144
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-I 178
D R SGG ++R+ I ++ P L+F+DEPT GLD + R++ +L+ +
Sbjct: 145 IDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198
Query: 179 AEAGKTVVTTIH 190
E G VV H
Sbjct: 199 RELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-15
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHP-YS 61
L GI+ + V+A +GPSG GK+T L +L+ +E G I + Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE----GEIRIDGRNIYD 74
Query: 62 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
K L+ +G V Q FP ++ E + Y LR+ +R + +
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 117 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
L + +D + +F +SGG+++R+CI + ++PS+L +DEP S LD + ++ +++
Sbjct: 132 LWDEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 176 QDIAEAGKTVVTT 188
++ + V+ T
Sbjct: 190 HELKKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 52/261 (19%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------- 56
+ K++L I+ ++ GEVL ++G SG+GK+ L+++L G G I Y+
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 57 -----------------------------DHPYSKSLKSKIGFVTQDD-VLFPHLTVKET 86
+ ++ +I + Q L+ TV +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 87 LTYAALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 144
+ L + + KE RA+D+I + L + T I R +SGGE++RV +
Sbjct: 131 V-----LEALEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIA----RDLSGGEKQRVVLA 180
Query: 145 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKL 203
++ P L DEPT LD TA + L++ +G ++V T H P + DK
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 204 ILLGKGSLLYFGKASEAMAYF 224
I L G + G E +A F
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSITYNDHP-YS 61
+K L I+ + V A +GPSG GK+TLL + L++ + G I + Y
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 62 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
K L+ ++G V Q FP ++ E + Y LRL +R +D E
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGI-----NNRRVLDEAVERS 148
Query: 117 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L +D + +F G+SGG+++R+ I I I P +L LDEPTS LD + L+
Sbjct: 149 LRGAALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206
Query: 171 IVQMLQDIAEAGKTVVTTIH 190
I +++ ++ T+V H
Sbjct: 207 IEELITELKSK-YTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 48/200 (24%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 65
PGEVL ++G SGSGKTTLLN LS RL P G + Y Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLA-PD-AGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 66 SKIGFVTQD--DVLFPHLT----VKETLT------YAALLRLPNTLTKQQKEKRAIDVIN 113
++ GFV Q D L ++ + E L Y + A D +
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI------------RATAGDWLE 136
Query: 114 --ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
E+ R D SGG ++R+ I ++ +P L+F+DEPT GLD + R+
Sbjct: 137 RVEIDAARIDDL------PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 172 VQMLQD-IAEAGKTVVTTIH 190
+ +L+ + E G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-15
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
+ S K+ LN I +A++GP+G+GK+TL +G +++PT GS+ P +
Sbjct: 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPT-SGSVLIRGEPIT 69
Query: 62 KS----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINE 114
K ++ +G V Q DD +F TV++ + + + N L ++ R ++
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPI----NLGLDEETVAHRVSSALHM 124
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
LGLE +D + +SGGE+KRV I I + P +L LDEPT+GLD ++
Sbjct: 125 LGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 175 LQDIAEA-GKTVVTTIHQ 191
L D+ E G TV+ + HQ
Sbjct: 180 LNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 5e-15
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 22/226 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS- 61
E L I + G+ +AL+G SGSGK+T+ NLL+ R + G I + H Y+
Sbjct: 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT-RFYDID-EGEILLDGHDLRDYTL 412
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELG 116
SL++++ V+Q+ LF + T+ + YA +++Q E+ A+D IN
Sbjct: 413 ASLRNQVALVSQNVHLF-NDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--K 465
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
++ DT+IG + V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAAL 523
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
D + +T + H+ S+ K D+++++ G ++ G +E +A
Sbjct: 524 DELQKNRTSLVIAHRLST--IEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYS--KSLKSKIG 69
I+ + GE++ +G +G+GK+T L +L+G L+ PT G + N P+ + IG
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PT-SGKVRVNGKDPFRRREEYLRSIG 100
Query: 70 FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
V Q L+ L ++L +L+L + + +R + L LE
Sbjct: 101 LVMGQKLQLWWDLPALDSLE---VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---- 153
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVT 187
VR +S G+R R + ++ P +LFLDEPT GLD I + L++ E TV+
Sbjct: 154 -VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 188 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 227
T H + D+++L+ +G L++ G ++ F
Sbjct: 213 TTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 6e-15
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 62
L G+T + PGE+ L G SG+GK+TLL L+ G +E G I ++ H ++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIWFSGHDITRLKNREVP 75
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
L+ +IG + QD L TV + + ++ + +++ A+D + L +
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK--- 132
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+F +SGGE++RV I ++ P++L DEPT LD + I+++ ++ G
Sbjct: 133 -----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 183 KTVVTTIH 190
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 7e-15
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 67
++ GI V GE + L+GPSG GK+TLL +++G +E G I ++ L+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG--LERITSGEIWIGGRVVNE-LEPAD 75
Query: 68 --IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV--INELG--LERCQ 121
I V Q+ L+PH++V+E + Y L++ K + E+R + I EL L+R
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYG--LKIRGM-PKAEIEERVAEAARILELEPLLDRKP 132
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
R +SGG+R+RV +G I+ P++ DEP S LD+ LR VQM
Sbjct: 133 ---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLR-VQM 173
|
Length = 356 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDH 58
E LN I+ + ++ ++G SGSGK+TL+ +G L++ G G I D
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDK 93
Query: 59 PYS---------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TK 101
+ K L+ ++ V Q FP + + ++ P L K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVKK 149
Query: 102 QQKEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLD 157
+ +K A +N++GL S++ G+SGG+++RV I + I P +L D
Sbjct: 150 SEAKKLAKFYLNKMGL--------DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217
EPT+GLD ++Q++ D KTV H L D++I++ KG +L G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTP 260
Query: 218 SE 219
E
Sbjct: 261 YE 262
|
Length = 320 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-15
Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSKSLKSKIGFVTQD 74
G+ LA++G +GSGK+TL +L+G ++EPT G I NDHP YS K +I + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGEILINDHPLHFGDYSFRSK-RIRMIFQD 95
Query: 75 --DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132
L P L + + L LRL L +Q+ K+ + + +GL +
Sbjct: 96 PNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----YPHM 149
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192
++ G+++RV + +I+ P ++ DE + LD + +++ ++ ++ E + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 193 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ H D+++++ +G ++ G ++ +A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 9e-15
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
+ +L ++ ++ G+ +A++GP+G+GK+TLL LL+G L P G++ +
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLS-GTVKVGE------- 383
Query: 65 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
KIG+ Q D L P TV E L+ E+ + G +
Sbjct: 384 TVKIGYFDQHRDELDPDKTVLEELSEGF---------PDGDEQEVRAYLGRFGF--TGED 432
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTAL 169
V +SGGE+ R+ + ++ P+LL LDEPT+ LD S AL
Sbjct: 433 Q--EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 9e-15
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 75
++N GE++ + GP+G+GKT+LL +L+G L P G + + P + D
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAG-LARPD-AGEVLWQGEPIRRQRDE-----YHQD 75
Query: 76 VLF-PHLT-VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 133
+L+ H +K LT LR L ++ + + ++GL +D VR +
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----VRQL 130
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192
S G+++RV + + L LDEP + +D R+ +L AE G V+ T HQ
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 62
E+ + + ++ ++N GE L + GP+G+GKTTLL +L+G L+ P G + + P +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLRPD-AGEVYWQGEPIQNVRE 71
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
S + ++ + LT E L + + + ++GL +D
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLED 125
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
V +S G+++RV + + L LDEP + LD + ++ A G
Sbjct: 126 LP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180
Query: 183 KTVVTTIHQP 192
V+ T HQP
Sbjct: 181 GIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 1e-14
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY-NDHPYSK--- 62
L+GI+ E+ AL+GPSG GK+T L N ++ + + G I + + Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 119
L+ ++G V Q FP +V + + Y L++ K+ ++R + + + + +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+D + + + SGG+++R+CI + + P ++ LDEPTS LD ++ I + L ++
Sbjct: 137 TKDNLDRNA--QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 180 EAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 219
++ T + Q + R+ D+ L G L+ G E
Sbjct: 195 HQYTFIMVTHNLQQAGRI---SDQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 26/222 (11%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQD 74
++ G ++ L+GPSG GKTT+L L++G L +PT G I D + + I V Q
Sbjct: 28 TIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86
Query: 75 DVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 133
LFPH+++ E + Y +L +P KQ+ K A+++++ G E +V +
Sbjct: 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRV-KEALELVDLAGFED--------RYVDQI 137
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT---IH 190
SGG+++RV + +I+ P +L DEP S LD+ LR M + I E + T +
Sbjct: 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDAN--LR-RSMREKIRELQQQFNITSLYVT 194
Query: 191 QPSSRLFHKFDKLILLGKGSL--------LYFGKASEAMAYF 224
S F D +I++ KG + LY AS MA F
Sbjct: 195 HDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236
|
Length = 351 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 47/279 (16%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 64
L + +V PGE+ AL+G +G+GK+TL+ +LSG + EPT G+IT N+ Y+K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPT-KGTITINNINYNKLDHKLAA 78
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-------NTLTKQQKEKRAIDVINELGL 117
+ IG + Q+ + LTV E L R N + ++ RA ++ +GL
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ D V +S ++ + I ++++ ++ +DEPTS L + + ++
Sbjct: 136 KVDLDE-----KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237
+ + G +V H+ + + D+ ++ GS + G S
Sbjct: 191 LRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS------------------- 230
Query: 238 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKP 276
D++N ++ + V ELQ+R +
Sbjct: 231 -----DVSNDDIVRLMVGRELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPY 60
E L I + +V AL+GPSG GK+TLL L+ R+ + G IT + Y
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIY 73
Query: 61 S----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ K+G V Q FP +++ E + Y LR + K+K+ +D + E
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LR-----AQGIKDKKVLDEVVERS 125
Query: 117 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L + +D + +F G+SGG+++R+CI I + P ++ +DEPTS LD +
Sbjct: 126 LRGAALWDEVKDRLKSHAF--GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183
Query: 171 IVQMLQDIAEAGKTVVTT 188
I ++++++ + V+ T
Sbjct: 184 IEELMEELKKNYTIVIVT 201
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 32/223 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 60
L+ ++ + +V A++GPSG GK+T L N ++ + V G +T Y+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+L+ +IG V Q FP ++ + + Y L++ Q ID E L R
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKI-------QGYDGDIDERVEESLRRA 164
Query: 121 ------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+D + +SGG+++R+CI I +P ++ +DEP S LD +I +
Sbjct: 165 ALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 175 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 215
++++AE TVV H Q ++R+ K + L G L+ F
Sbjct: 223 IEELAEE-YTVVIVTHNMQQAARISDK--TAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKS 63
++ G+ +A++GP+G+GKTTL+NLL R+ +PTVG ++T +S
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVT------RES 406
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-- 121
L+ I V QD LF +++E + + + K A D I L+R
Sbjct: 407 LRKSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFI----LKRSNGY 461
Query: 122 DTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
DT++G RG +SGGER+R+ I I+ N +L LDE TS LD T R V+ D
Sbjct: 462 DTLVGE---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR-VKNAIDAL 517
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+T H+ S+ D ++ L +G L+ G E
Sbjct: 518 RKNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQE 555
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 36/214 (16%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 60
L G++ + V AL+GPSG GK+T L N ++ R+ + GS+ Y D
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKEKRAID 110
L+ ++G V Q FP +++E ++Y L RL L + K+ D
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL---LGRDDKDAE--D 174
Query: 111 VINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+ E L + D + G+SGG+++R+CI + ++P ++ +DEP S LD
Sbjct: 175 ELVERSLRQAALWDEVNDRL--DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 165 STTALRIVQMLQDIAEAGKTVVTTIH--QPSSRL 196
+I +++++AE TVV H Q ++R+
Sbjct: 233 PIATSKIEDLIEELAEE-YTVVVVTHNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 67
+L GI +++ GEV AL+G +G+GK+TL+ +++G + P G++ +P ++ +K
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG--IVPPDSGTLEIGGNPCARLTPAKA 83
Query: 68 ----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
I V Q+ +LFP+L+VKE + L LP Q ++ ++ LG + D+
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENI----LFGLPKR---QASMQKMKQLLAALGCQLDLDS 136
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL---DSTTALRIVQMLQD 177
G V +R+ V I ++ + +L LDEPT+ L ++ ++ L
Sbjct: 137 SAGSLEV-----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
|
Length = 510 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 3e-14
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
E L I V GE++A++GP GSGK++LL+ L G L + GS++
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVP------ 65
Query: 63 SLKSKIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAIDV-------- 111
I +V+Q P + T++E + + +++ ++ I
Sbjct: 66 ---GSIAYVSQ----EPWIQNGTIRENILFGKPFD-------EERYEKVIKACALEPDLE 111
Query: 112 INELGLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
I G T IG +G+ SGG+++R+ + + + + LD+P S +D+
Sbjct: 112 ILPDGDL----TEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 170 RIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210
I + + + KT + HQ L D++++L G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 35/187 (18%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 64
E +IL G+ S+N GE+ A+MGP+GSGK+TL +++G + G I + +S+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG----ESIL 74
Query: 65 ------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQ--KEKRAI---D 110
++ +G F+ Q + P ++ A LRL N+ K Q E + +
Sbjct: 75 DLEPEERAHLGIFLAFQYPIEIP------GVSNADFLRLAYNSKRKFQGLPELDPLEFLE 128
Query: 111 VINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDS 165
+INE L L + + + G SGGE+KR NEI +++ L LDE SGLD
Sbjct: 129 IINEKLKLVGMDPSFLSRNVNEGFSGGEKKR----NEILQMALLDSELAILDETDSGLD- 183
Query: 166 TTALRIV 172
AL+I+
Sbjct: 184 IDALKII 190
|
Length = 252 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-14
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
+ + ILN I+ S+ GE + GPSG GK+TLL +++ L+ PT G++ + S
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDIST 73
Query: 62 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ + ++ + Q LF TV + L + +R +Q +D + L
Sbjct: 74 LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFALP 127
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
DT++ + + +SGGE++R+ + + P +L LDE TS LD
Sbjct: 128 ---DTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 21/196 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-------- 57
E ++ + G+ A++G +GSGK+TL+ ++ L++PT G ++T +D
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLKPTTG-TVTVDDITITHKTK 76
Query: 58 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINEL 115
Y + ++ +IG V Q FP + E ++ P E A ++ +L
Sbjct: 77 DKYIRPVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDL 132
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
G R D M F +SGG+ +++ I + + +NP ++ LDEPT+GLD + +++++L
Sbjct: 133 GFSR--DVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLL 188
Query: 176 QDIA-EAGKTVVTTIH 190
+ + + KT++ H
Sbjct: 189 KSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 5e-14
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 18/197 (9%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT------VGGSITYN 56
+ EK L+ I+ + G +AL+G +GSGK+TL+ + L++P+ G IT
Sbjct: 16 TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPE 74
Query: 57 DHPYS-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVIN 113
+ K L+ K+ V Q FP + E + P ++ + +++A+ +
Sbjct: 75 TGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLK 130
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
++GL +D + F +SGG+ +RV I + P +L LDEP +GLD ++Q
Sbjct: 131 KVGLS--EDLISKSPF--ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ 186
Query: 174 MLQDIAEAGKTVVTTIH 190
+ +D +AG TV+ H
Sbjct: 187 LFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 5e-14
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITY 55
++ IL + + V AL+GPSG GK+T + +L+ G E + G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 56 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+ L+ K+G V Q FP ++ + + Y LR+ + E+R + +
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAA 130
Query: 116 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L + +D + + G+SGG+++R+CI I ++P ++ +DEP S LD + +I +
Sbjct: 131 ALWDEVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208
+ + E V+ T + + K+ L G+
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHP-YSK-----SLK 65
++ P V A +GPSG GK+T+L L+ R+ E G G + + Y +++
Sbjct: 26 NIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ER 119
IG V Q FP +++++ + A L+L + K+ +D + E L
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV--VAGLKLNG-----VRNKKDLDELVEKSLRGANLWNE 137
Query: 120 CQDTM--IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+D + GG G+SGG+++R+CI I + P +L +DEP S LD + L I ++ +
Sbjct: 138 VKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 178 IAEAGKTVVTTIH--QPSSRLFHK--FDKLILLGK-GSLLYFGKASE 219
+ + T+V H Q ++R+ + F L GK G L+ +
Sbjct: 194 LKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239
|
Length = 258 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 62
L+G++ ++ G+ LA++G SG GK+TL LL+ ++E GG + Y D K
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT--MIETPTGGELYYQGQDLLKADPEAQK 88
Query: 63 SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--E 118
L+ KI V Q+ L P V + L L + +L+ ++ ++A+ ++ ++GL E
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRPE 146
Query: 119 RCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
M SGG+R+R+ I ++++P ++ DEP S LD
Sbjct: 147 HYDRYPHMF--------SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 7e-14
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 62
+K L I + ++ AL+G SG GK+T L N ++ ++ + + G +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLVEIEGKDVKN 71
Query: 63 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELG 116
+L+ +G V Q +F ++ E ++YA L + + K + E+ A+ D + ++G
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKL---HGMIKNKDEEEALVVDCLQKVG 127
Query: 117 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
L E +D + + +SGG+++R+CI + I P LL LDEPTS LD ++ I ++L
Sbjct: 128 LFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
++++ ++ T + + + LG+ L+ FG++ E
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE--LIEFGESKE 227
|
Length = 246 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 7e-14
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
++ +L+ ++ + PG++L L+GP+G+GK+TL+ ++ G L+ P G I N K
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPD-EGVIKRNG-------K 66
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTM 124
+IG+V Q +L LT LRL P T K+ D++ L+R Q
Sbjct: 67 LRIGYVPQK----LYLDTTLPLTVNRFLRLRPGT-------KKE-DILP--ALKRVQAGH 112
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+ + ++ +SGGE +RV + ++ P LL LDEPT G+D
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 7e-14
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 71
++ G+ +AL+GPSG+GKT+LLN L G L GS+ N +S + + +V
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTM 124
Q+ L H T+++ + LL P+ + +Q + + + L GL DT
Sbjct: 429 GQNPQLP-HGTLRDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----DTP 478
Query: 125 IG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
IG + G+S G+ +R+ + ++ LL LDEPT+ LD+ + ++Q L A +
Sbjct: 479 IGDQA--AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSL 211
T + HQ ++D++ ++ G +
Sbjct: 536 TTLMVTHQLED--LAQWDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 7e-14
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
GS++ EV+ ++GP+G GKTT + +L+G L +P G D + + Q
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD---------TVSYKPQ- 68
Query: 75 DVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132
++ T LL + T + ++ L +E+ D V
Sbjct: 69 -----YIKADYEGTVRDLLSSITKDFYTHPYFK---TEIAKPLQIEQILD-----REVPE 115
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIH 190
+SGGE +RV I + + + LDEP++ LD L ++++ AE KT H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 8e-14
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS- 63
++ + PGEVL ++G SGSGK+TLL L+GRL G+ TY Y S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTATYIMRSGAELELYQLSE 77
Query: 64 ------LKSKIGFVTQDDVLFPHLTVKETLTYAALL--RLPNTLTKQQKEKR--AIDVIN 113
++++ GFV Q+ P ++ ++ A + RL + R A D +
Sbjct: 78 AERRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
E+ ++ + + +F SGG ++R+ I ++ P L+F+DEPT GLD + R++
Sbjct: 134 EVEIDPTRIDDLPRAF----SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 174 MLQD-IAEAGKTVVTTIH 190
+L+ + + G V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-14
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 21/198 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 62
+ L + ++ PG++L + GP+GSGK+TLL+L+ R + + G I ++D P +K
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVS-EGDIRFHDIPLTKLQL 384
Query: 63 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-IDVINE--LGLE 118
S +S++ V+Q LF TV + AL R P+ T+Q+ E A + +++ L L
Sbjct: 385 DSWRSRLAVVSQTPFLFSD-TVANNI---ALGR-PDA-TQQEIEHVARLASVHDDILRLP 438
Query: 119 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ DT +G RGV SGG+++R+ I +++N +L LD+ S +D T +I+ L+
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495
Query: 177 DIAEAGKTVVTTIHQPSS 194
E G+TV+ + H+ S+
Sbjct: 496 QWGE-GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-14
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 61
+L ++ SVN GE + L GPSGSGK+TLL L G+++ G +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 62 KSL---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ L ++ IG+V+Q + P ++ L A L + ++ +A D++ L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRLNLP 142
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
++ +F SGGE++RV I I++ +L LDEPT+ LD+T +V+++++
Sbjct: 143 ERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 179 AEAGKTVVTTIHQPSSR 195
G +V H R
Sbjct: 199 KARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-13
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 63
+ L+ ++ ++ GE++AL+GP+GSGK+TLL ++G L++PT G I + +K
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG-LLKPT-SGEILIDGKDIAKLPL 68
Query: 64 --LKSKIGFVTQ 73
L+ +IG+V Q
Sbjct: 69 EELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 21/191 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS 63
+ ++ V GE++ + G +G+G++ L+ +SG + G I N +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LRKPASGRILLNGKDVLGRLSPRER 331
Query: 64 LKSKIGFVTQD---DVLFPHLTVKE-----TLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+ + +V +D L L++ E R + + K A ++I E
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-KFARELIEEF 390
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
+ R + R +SGG ++++ + E+ P LL +PT GLD I + L
Sbjct: 391 DV-RAPSP---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 176 QDIAEAGKTVV 186
++ +AGK V+
Sbjct: 447 LELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 58
S E+K IL G+ V PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 59 --PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------ 110
P ++ + I Q V P ++ + L A + + + +D
Sbjct: 70 LSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTAL------NAVRSYRGQEPLDRFDFQD 122
Query: 111 -VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
+ ++ L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181
Query: 170 RIV 172
+IV
Sbjct: 182 KIV 184
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDHPYSK- 62
++L+G+ + + ALMGPSGSGK+TLL + + RL+E V G + + K
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKM 75
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 117
L+ ++ V Q P+L++ E + A L+L N L K +KE +R + + L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENV--ALGLKL-NRLVKSKKELQERVRWALEKAQL 132
Query: 118 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ +D + + +SGG+++R+CI + P +L DEPT+ LD +I +
Sbjct: 133 WDEVKDRL--DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 177 DIAEAGKTVVTTIHQP 192
++ + T+V H P
Sbjct: 191 ELKKD-MTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITYNDHP 59
L I + +V A +GPSG GK+TLL L + E + G +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 60 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 118
+ L++K+G V Q FP +++ + + + +RL L++ + ++R + + L
Sbjct: 89 IAL-LRAKVGMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+D + +SGG+++R+CI I I P +L LDEP S LD + RI +++ ++
Sbjct: 145 EVKDKL--HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202
Query: 179 AEAGKTVVTTIH 190
+ TVV H
Sbjct: 203 KQD-YTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---- 56
+TS + K + + I+ SV GE+L G GSG+T L+N L G ++ GG I N
Sbjct: 271 VTSRDRKKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDI 327
Query: 57 --DHPYSKSLKSKIGFVTQ---DDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEK 106
P ++K + ++T+ D+ FP+ ++ + + + L+ L + E+
Sbjct: 328 SPRSPLD-AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ 386
Query: 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166
R + EL +C + +SGG +++V I + P ++ DEPT G+D
Sbjct: 387 RTAENQRELLALKCHSV---NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443
Query: 167 TALRIVQMLQDIAEAGKTVV 186
I ++++ +A+ GK ++
Sbjct: 444 AKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
E+ L + S+ G +A++G +GSGK+TLL L+G L++PT G++T + +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLQPT-SGTVTIGERVITAGKK 76
Query: 62 ----KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINEL 115
K L+ K+G V Q FP H +ET+ N ++++ +++A ++I +
Sbjct: 77 NKKLKPLRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV 132
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GL ++ + F +SGG+ +RV I + + P +L LDEPT+GLD +++M
Sbjct: 133 GLP--EELLARSPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188
Query: 176 QDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ E G T V H D+++++ KG++ G E
Sbjct: 189 YKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKGTVFLQGTPRE 232
|
Length = 290 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 40/268 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSI------TYNDHPY 60
LN ++ V G++ ++G SG+GK+TL+ NLL PT G I T +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE----RPTSGSVIVDGQDLTTLSNSE 76
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+ +IG + Q L TV + A L L NT K + +++ +++ +GL
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNT-PKDEIKRKVTELLALVGLGDK 133
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
D S+ +SGG+++RV I + NP +L DE TS LD T I+++L++I
Sbjct: 134 HD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 181 A-GKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237
G T++ H+ R+ + ++ G L+ G SE ++ P+ +
Sbjct: 189 RLGLTILLITHEMDVVKRICD---CVAVISNGELIEQGTVSEIFSH-------PKTPL-A 237
Query: 238 AEFLLDLANGNLHDVSVPSELQDRVQTE 265
+F+ LH +S+P + Q+R+Q
Sbjct: 238 QKFI----RSTLH-LSIPEDYQERLQAT 260
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-13
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 52/194 (26%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 76
+ PG+ L + GPSG+GK++L L+G + P G I L F+ Q
Sbjct: 24 IKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGM--PEGEDLL-----FLPQRP- 73
Query: 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 136
P T++E L Y L SGG
Sbjct: 74 YLPLGTLREQLIYPWDDVL--------------------------------------SGG 95
Query: 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 196
E++R+ ++ P +FLDE TS LD + R+ Q+L+ E G TV++ H+PS
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRPSLWK 152
Query: 197 FHKFDKLILLGKGS 210
FH L L G+G
Sbjct: 153 FHDR-VLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 9 ILNGITGSVN----------PGEVLALMGPSGSGK-TTLLNLLSGRLMEPTVGGSITYND 57
+LN +T V+ PGE L+L+G SGSGK TT LL RL+E + GG I +N
Sbjct: 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL--RLVE-SQGGEIIFNG 385
Query: 58 H-----PYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRA 108
K +L+ I F+ QD + L ++T+ + + LR+ L + R
Sbjct: 386 QRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARV 443
Query: 109 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
++ +GL F SGG+R+R+CI + +NP ++ DE S LD +
Sbjct: 444 AWLLERVGLLPEHAWRYPHEF----SGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
Query: 169 LRIVQMLQDI 178
+I+ +L D+
Sbjct: 500 GQIINLLLDL 509
|
Length = 623 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSL 64
LN ++ SV+PGE+ L+GP+G+GKTTL+++++G+ P G G P +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYA--------ALLRLPNTLTKQQKEKRAIDVINEL- 115
++ IG Q +F +LTV+E L A A L + +E+R ID +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF----ARLRAEERRRIDELLATI 135
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GL +D + +S G+++ + IG + +P LL LDEP +G+ + ++L
Sbjct: 136 GLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 176 QDIAEAGKTVV 186
+ +A +V
Sbjct: 191 KSLAGKHSILV 201
|
Length = 249 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
L ++G V GE+L L+GP+G+GK+TLL ++G + GSI + P +++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 69 ---GFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINEL-GLERCQD 122
+++Q +P + LT Q +K +++N++ G D
Sbjct: 72 RHRAYLSQQQ--------------TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD 117
Query: 123 TMIGGSFVRGVSGGERKRV-----CIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQML 175
+ G +SGGE +RV + NP+ LL LDEP + LD + ++L
Sbjct: 118 KL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+ + G +V + H + L H + LL +G LL G+ E +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 4e-13
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITYNDHP-YS 61
EK L ++ + V AL+GPSG GK+T LN ++ + + G ++ Y
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 62 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
L+ +G V Q FP +++ + + Y + N K+ +D + E
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN--------KKDLDGVVENA 134
Query: 117 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L + D + S +SGG+++R+CI + + P ++ DEPTS LD + R
Sbjct: 135 LRSAALWDETSDRL--KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 171 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
I ++ ++ + V+ T + + + L+G+ L+ FG+ +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE--LIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 5e-13
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITYNDHPY 60
LN I + + AL+GPSG GK+T L +L+ G +E V G Y+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER- 119
L+ KIG V Q F +++ + ++Y + K+K+ +D I E L++
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH-------GTKDKKKLDEIVEQSLKKS 134
Query: 120 -----CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+D + + +SGG+++R+CI + I P+++ +DEPTS LD + +I ++
Sbjct: 135 ALWNEVKDKLNTNAL--SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 175 LQDIAEAGKTVVTT 188
+ ++ E+ ++ T
Sbjct: 193 IINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 28/216 (12%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSLKSKIGFVTQD 74
G+V L+G +GSGK+TLL +L GR P+ G I + P SK+ K+ ++ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 75 DVLFPHLTVKETLT------YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
+TV+E + + AL R ++K + AI ++ GL +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEAISLV---GL-----KPLAHR 143
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVT 187
V +SGGER+R I + + L LDEPTS LD + ++ ++ ++ E G TV+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203
Query: 188 TIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+H ++R D L+ L G ++ G +E M
Sbjct: 204 VLHDINMAARY---CDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 7e-13
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 65
L I + GE + ++G +GSGK+TL L+G L+ P G I D + ++
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIR 76
Query: 66 SKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+G V Q+ + F TV+E L + L LP + KR + E+GLE+ +
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR 132
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
+ +SGG+ + V + + + P L DE TS LD + + +++ ++ + E GK
Sbjct: 133 S-----PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS--SIGCSPQIAMNPAEFL 241
T+V H H D++I++ +G ++ G+ ++ S ++G +P + AE L
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENL 245
Query: 242 LDLANGNLHDVSVPSE 257
+H V +P E
Sbjct: 246 ------KMHGVVIPWE 255
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 9e-13
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 22 VLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK-----SLKSKIGFVT 72
V A++GPSG GK+T+L N + + V G I +D Y + S++ ++G V
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 73 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVR 131
Q FP +++ + + A +L + + + ++ + + L + +D + +
Sbjct: 92 QKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 188
+SGG+++R+CI I + P ++ +DEP S LD + L+I ++++++ E ++ T
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 9e-13
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSK 62
IL ++ + PG V AL+G +G+GK+TLL L+G L V G +T N P +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 63 SLKSKIG-----FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
++ F + +E + L R P+ R ++ + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVL---LGRYPHARRAGALTHRDGEIAWQ-AL 130
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIG---------NEIIINPSLLFLDEPTSGLDSTTA 168
T + G V +SGGE RV ++ P L LDEPT+ LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 169 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
R++ ++ +A + V+ +H P+ H D++ +L G+++ G ++ +
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 62
+K+ + GI ++ AL+GPSGSGK+T L N ++ + V G I Y ++
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 63 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
++ IG V Q F ++ E +T+A K+K+ +D I E
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERA-------GVKDKKVLDEIVETS 143
Query: 117 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTA 168
L ++ +D + + +SGG+++R+CI I + P +L +DEP S LD ST
Sbjct: 144 LKQAALWDQVKDDLHKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 169 L 169
L
Sbjct: 202 L 202
|
Length = 267 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKSLKSK 67
L + +V G + AL+G +GSGK+TL L G RL G I+ P ++L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS----GKISILGQPTRQALQKN 78
Query: 68 -IGFVTQD---DVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ +V Q D FP L + + LR K++ + + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVE 134
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+ IG +SGG++KRV + I ++ LDEP +G+D T RI+ +L+++
Sbjct: 135 FRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
+ GKT++ + H S +F ++ KG++L G
Sbjct: 190 DEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSK 67
N + V E+++L+GP+G+GKTT+ N L+G +PT GG+I ++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG-FYKPT-GGTILLRGQHIEGLPGHQIAR 79
Query: 68 IGFVT--QDDVLFPHLTVKETLTYA-------ALLR-LPNTLTKQQKEKRAIDV----IN 113
+G V Q LF +TV E L A L L T ++ E A+D +
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+GL + G ++ G+++R+ I ++ P +L LDEP +GL+
Sbjct: 140 RVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYS 61
+L I ++ A++GPSG GK+TLL +++SG +E G + N++ YS
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE---GAVLLDNENIYS 75
Query: 62 KSL-----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+L + ++G V Q FP ++ + + + R+ T + + ++ + +
Sbjct: 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAA 132
Query: 117 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
L + +D + +SGG+++R+CI + I P ++ +DEP S LD + +RI +++
Sbjct: 133 LWDEVKDNLHKSGL--ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM 190
Query: 176 QDIAEAGK-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
Q++ + +VT Q ++R D L G L+ +G+ E
Sbjct: 191 QELKQNYTIAIVTHNMQQAAR---ASDWTGFLLTGDLVEYGRTGE 232
|
Length = 251 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 62
+ + +T + G A++GP+G GK+TLL LS RLM P G +H SK
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASK 77
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 120
+ +IG + Q+ +TV+E + R P+ T+ +KE + + + ++
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG---RYPHQPLFTRWRKEDE--EAVTK-AMQAT 131
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 179
T + V +SGG+R+R I + +++ LDEPT+ LD + + ++++L ++
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 180 EAGKTVVTTIH 190
E G T+ +H
Sbjct: 192 EKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSIT 54
K +L+ ++ V +LMGP+GSGKTT L L SG ++ +GG
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSI 90
Query: 55 YNDHPYSKSL--KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+N Y L + ++G + Q FP + L A +R + +++ A +
Sbjct: 91 FN---YRDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARL 144
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
E+GL + S R +SGG+++ +C+ + +NP +L LDEPTS LD TT +I
Sbjct: 145 TEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 173 QMLQDIAEAGKTVVTT 188
+ ++ +A+ ++ T
Sbjct: 204 EFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
+EK LN ++ V GE L+++G +GSGK+T + L+ G L+E G I D +
Sbjct: 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEE 74
Query: 63 S---LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGL 117
+ ++ KIG V Q+ D F TV++ + + L N + ++ ++R + + +G+
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGM 130
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ ++ +SGG+++RV I + + P ++ LDE TS LD L +++ ++
Sbjct: 131 QDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 178 IAEA-GKTVVTTIH 190
I + TV++ H
Sbjct: 186 IRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 25/225 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
IL+ I+ ++ ++G SGSGK+TL LL G + G I N +L
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG-FFQAR-SGEILLNGFSLKDIDRHTL 546
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV------INELGLE 118
+ I ++ Q+ +F ++ E L A Q + A ++ I + L
Sbjct: 547 RQFINYLPQEPYIFSG-SILENLLLGA-----KENVSQDEIWAACEIAEIKDDIENMPLG 600
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+ GS +SGG+++R+ + ++ + +L LDE TS LD+ T +IV L ++
Sbjct: 601 YQTELSEEGS---SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
+ KT++ H+ S + + DK+I+L G ++ G E +
Sbjct: 658 QD--KTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLDR 698
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYND-HPY 60
K IL I + EV A +GPSG GK+T L N ++ + V G + + Y
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 61 SKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE- 114
S L++K+G V Q FP ++ + + Y L K K+ +D I E
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP------KLHGLAKNKKKLDEIVEK 128
Query: 115 ----LGL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165
+GL +R +D+ +SGG+++R+CI I + P++L +DEP S LD
Sbjct: 129 SLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182
Query: 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
I ++Q++ + +V T ++ D++ G ++ + E
Sbjct: 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVS--DRVAFFQSGRIVEYNTTQE 234
|
Length = 251 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-12
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 62
+++ +L G+ + V L+G +G GK+TL LSG L+ P G++ + P YSK
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG-LLRPQ-KGAVLWQGKPLDYSK 69
Query: 63 ----SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
+L+ ++ V QD + + + + ++ L N + + R +D L L
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS----LRNLGVPEAEITRRVD--EALTL 123
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
Q ++ +S G++KRV I +++ L LDEPT+GLD +++ +++
Sbjct: 124 VDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
I G V+ + H ++ D + +L +G +L G E A
Sbjct: 182 IVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP- 59
EK L + + V A +GPSG GK+T L L+ M T V G IT +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN--RMNDTIDGCRVTGKITLDGEDI 88
Query: 60 YSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
Y L++++G V Q FP ++ E + Y + + L + + E +D I E
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI---HGLARSKAE---LDEIVE 141
Query: 115 LGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
L + +D + G+SGG+++R+CI I ++P ++ +DEP S LD
Sbjct: 142 TSLRKAGLWEEVKDRL--HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 169 LRIVQMLQDIAEAGKTVVTT 188
++ +++ ++ + V+ T
Sbjct: 200 AKVEELIDELRQNYTIVIVT 219
|
Length = 267 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
LN ++ V+PGE+ ++GP+G+GKTT++++++G+ P GS+ + + + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDE-GSVLFGGTDLTGLPEHQIA 75
Query: 69 ----GFVTQDDVLFPHLTVKETL--TYAALLRLPNTLTKQ--QKEKRAID-VINELGLER 119
G Q +F +LTV E L + +L + +EK I+ V+ +GL
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
D + G +S G+++ + IG ++ +P LL LDEP +G+ + ++L+ +A
Sbjct: 136 EADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 180 EAGKTVVTTIH 190
+VV H
Sbjct: 191 G-KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 48/253 (18%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY------N 56
EK +N I+ + V AL+GPSG GK+T L N ++ + G I Y +
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 57 DHPYSKSLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
+ +L+ +IG V Q FP + + L YA ++ K +D I
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-----------ERRKSVLDEIV 141
Query: 114 ELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
E L + +D + + +SGG+++R+CI + + P++L LDEP S LD +
Sbjct: 142 EESLTKAALWDEVKDRLHSSAL--SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 168 ALRIVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226
+I +++ ++ E ++ T + Q + R+ D+ G L+ + +
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRV---SDRTAFFLNGDLVEYDQ---------- 246
Query: 227 IGCSPQIAMNPAE 239
+ QI +P +
Sbjct: 247 ---TEQIFTSPKQ 256
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-12
Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSI------TYNDHPY 60
+ GI+ + +V A++GPSG GK+T + L+ L P V G + Y+
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 119
L+ +IG V Q FP +++ E + Y +R+ L + ++ + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQE 139
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 178
+D + + G+SGG+++R+CI + I P +L +DEP S LD +++ +++ +
Sbjct: 140 VKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197
Query: 179 AEAGKTVVTTIHQPSSRL 196
+E +VT Q ++R+
Sbjct: 198 SELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-12
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK--- 62
+ + + ++ A +GPSG GK+T+L N L+ + V G +T++ Y+
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAI----- 109
++ +IG V Q FP ++ + + Y A + N E ++A
Sbjct: 86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI---NGYKGDMDELVERSLRQAALWDEV 141
Query: 110 -DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
D + + GL +SGG+++R+CI I + P ++ +DEP S LD +
Sbjct: 142 KDKLKQSGL--------------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
Query: 169 LRIVQMLQDIAEAGKTVVTTIH--QPSSR 195
LRI +++ ++ E T++ H Q ++R
Sbjct: 188 LRIEELMHELKEQ-YTIIIVTHNMQQAAR 215
|
Length = 264 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 32/223 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 65
L ++ SV GE +A++G +GSGK+TL LL+G L+ P G+IT S+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-LLLPE-AGTITVGGMVLSEETVWDVR 80
Query: 66 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDT 123
++G V Q+ D F TV++ + + L N + +++ +R + ++G+E
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGME----- 131
Query: 124 MIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQ 176
F+ +SGG+++RV I + + P ++ LDE TS LD L V+ L+
Sbjct: 132 ----DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ + G TV++ H + D++I++ KG +L G E
Sbjct: 188 E--QKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEE 226
|
Length = 279 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKS-KIGFV 71
++ G+ LA++G +GSGK+TL +L+G ++EPT G + +DHP S +S +I +
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 72 TQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 129
QD L P + + L + LRL L +Q+EK+ I+ + ++GL +
Sbjct: 93 FQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDH----ASYY 146
Query: 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
++ G+++R+ + +I+ P ++ DE + LD + +++ ++ ++ E +
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206
Query: 190 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
Q + H D+++++ +G ++ G ++ +A
Sbjct: 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 6e-12
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
E L ++ V GE + L+G +G+GK+TLL LL+G + P G++T
Sbjct: 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG-IYPPD-SGTVTVR----- 82
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ S +G + P LT +E + L L++++ +++ ++I L
Sbjct: 83 GRVSSLLGLGGGFN---PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSELGDFI 136
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
D V+ S G + R+ + P +L +DE + D+ + + L+++ +
Sbjct: 137 DLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 182 GKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 215
GKTV+ H PSS + D+ ++L KG + + G
Sbjct: 192 GKTVILVSHDPSS--IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
S+ L ++ ++ G+ +++G +GSGK+T+ L+ G +E G I YN+ +
Sbjct: 19 SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IEKVKSGEIFYNNQAITDD 76
Query: 62 --KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVINELGL 117
+ L+ IG V Q+ D F VK Y L N + R + + + ++ +
Sbjct: 77 NFEKLRKHIGIVFQNPDNQFVGSIVK----YDVAFGLENHAVPYDEMHRRVSEALKQVDM 132
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQM 174
D +SGG+++RV I + +NPS++ LDE TS LD L +V+
Sbjct: 133 LERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
++ +E T+++ H S + + D +I++ KG++ G +E
Sbjct: 188 VK--SEHNITIISITHDLSEAM--EADHVIVMNKGTVYKEGTPTE 228
|
Length = 269 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 51/189 (26%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLM-EPTV----------GGS 52
+ ++N ++ + GE LAL+G SGSGK+ T L++L RL+ P V G S
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 53 ITYNDHPYSKSLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 109
+ + + ++ +KI + Q+ + L P T+++ L +L L + ++ +
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREAARGEIL 135
Query: 110 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
+ ++ +G+ + + + +SGGER+RV I ++ P LL DEPT+ LD +
Sbjct: 136 NCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 170 RIVQMLQDI 178
+I+Q+L+++
Sbjct: 194 QILQLLREL 202
|
Length = 529 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------TVGGSITYNDH 58
+K LN I+ S+ G AL+G +GSGK+T+ L++G L+ TV G IT
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLT-- 75
Query: 59 PYSKSL---KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVIN 113
+K++ + K+G V Q+ D F TV + + + L N + + + + DV+
Sbjct: 76 --AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPRPEMIKIVRDVLA 129
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
++G+ D S +SGG+++RV I + + P ++ LDE TS LD +I++
Sbjct: 130 DVGMLDYID-----SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 174 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+++ + + TV++ H + D++++L G LL G E
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 65
L + ++ G A +G +GSGK+T++ LL+G L PT G +K +K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 66 S---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 120
K+G V Q FP + E + P +++++ E A + + +G+
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS-- 135
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ F +SGG+ +RV I + + P +L LDEPT+GLD ++ + + + +
Sbjct: 136 ESLFEKNPF--ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193
Query: 181 AGKTVVTTIH 190
+G T+V H
Sbjct: 194 SGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
L+ I+ G+V ALMG +G+GK+TLL +LSG +P GSI + +L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG-NYQPD-AGSILIDGQEMRFASTTAAL 77
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQ 121
+ + + Q+ L P +TV E L L +LP+ + ++ A + + LG++
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS--TTAL-RIVQMLQD 177
DT ++ +S G+R+ V I + N ++ DEPTS L + L R+++ L+
Sbjct: 135 DTP-----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 2e-11
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGG-SITYNDHPYSKSLKSKIGFV 71
V PGE L+G +G+GKTT +L+G + TV G SI N +++ G+
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYC 2017
Query: 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 131
Q D + LT +E L A LR + ++ EK A I LGL D + G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
SGG ++++ +I P L+ LDEPT+G+D + + I G+ VV T H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 12 GITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYSK-SLKS 66
+ S+ GEVLAL+G SGSGK+ +L LL L + G I + P S++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLSIRG 61
Query: 67 K-IGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+ I + Q+ P T+ LR L+KQ + ++ + +GL ++
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQAR-ALILEALEAVGLPDPEEV 118
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ + +SGG +RV I +++ P L DEPT+ LD R++++L+++ +
Sbjct: 119 L--KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
K+IL I+ S PG + ++G +G+GK+TLL +++G D ++ +
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFNGEARP 64
Query: 67 ----KIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PNT-----LTKQ 102
K+G++ Q+ L P TV+E + AL R P+ L +Q
Sbjct: 65 APGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 103 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+L LDEPT+ LD+ + + Q LQ+ TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 8e-11
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 22 VLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
V A++GPSG GK+T L + +G LM G Y L+ KIG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYGKFTDEVLLRKKIG 123
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDT 123
V Q FP ++ + + Y L +K+ ++ I E L + D
Sbjct: 124 MVFQKPNPFPK-SIFDNIAYGPRLH-------GINDKKQLEEIVEKSLRKAALWDEVSDR 175
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
+ + G+SGG+++R+C+ + + P +L LDEPTS LD +I ++Q++
Sbjct: 176 LDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSY 232
Query: 184 TVVTTIH--QPSSRL 196
T++ H Q +SR+
Sbjct: 233 TIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITY 55
+ L+ I+ +V AL+GPSG GK+T L +L+ G +E + G +I Y
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI-Y 76
Query: 56 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+ H L+ ++G V Q FP ++ E + Y LR+ K +R +
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHA 133
Query: 116 GL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L +R ++ +G +SGG+++R+CI + + P +L +DEP S LD +
Sbjct: 134 ALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187
Query: 171 IVQMLQDIAEAGKTVVTTIH--QPSSRL 196
I +++ ++ +A T++ H Q ++R+
Sbjct: 188 IEELIHEL-KARYTIIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-10
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 21 EVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPY------SKSLKSKIGFV 71
+++A +GPSG GK+TLL N ++ + V G + Y D S L+ ++G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMI 125
Q FP ++ E + +A + K +D + E L R +D +
Sbjct: 107 FQRPNPFPK-SIYENIAFAP---------RANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
+SGG+++R+CI I + P +L +DEP S LD + ++ ++ ++ E T+
Sbjct: 157 EKG--TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTI 213
Query: 186 VTTIH--QPSSRL 196
+ H Q +SR+
Sbjct: 214 IMVTHNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 65
L G++ S+ G AL+GP+G+GK+TLL L+G + G + + ++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG--IYLPQRGRVKVMGREVNAENEKWVR 78
Query: 66 SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQD 122
SK+G V QD D +F TV + + + + N L K + E+R + + + + +D
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAFGPV----NMGLDKDEVERRVEEALKAVRMWDFRD 133
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+S G++KRV I + ++P ++ LDEP + LD ++++L + G
Sbjct: 134 KP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 183 KTVVTTIH 190
KTV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 20 GEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITYN-DHPYSKSL-----KSKIGF 70
G+V AL+GPSG GK+T+L L+ L+E ++ G + ++ Y + + +IG
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 71 VTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTM 124
V Q FP ++ E + + A R+ + L ++ K A+ + C+D +
Sbjct: 99 VFQQPNPFPK-SIYENIAFGA--RINGYTGDMDELVERSLRKAAV-------WDECKDKL 148
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
+ +SGG+++R+CI I I P ++ +DEP S LD + L+I + + ++ +
Sbjct: 149 NESGY--SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 185 VVTT 188
V+ T
Sbjct: 207 VIVT 210
|
Length = 269 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVL 77
++ A +G +G+GKTT L++L+G L P G++ +L + +G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLL--PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 137
F HLTV E + + A L+ + + Q E A+ + + GL ++ + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK-GRSWEEAQLEMEAM--LEDTGLHHKRNEE-----AQDLSGGM 1066
Query: 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
++++ + + + ++ LDEPTSG+D + I +L +G+T++ + H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 17/193 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 62
+ I + I+ +V G++ A+MGPSG GKTTLL L+ G++ G I ++ S+
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEILFDGENIPAMSR 76
Query: 63 S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
S ++ ++ + Q LF + V + + Y LR L + + +GL
Sbjct: 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHSTVMMKLEAVGLR 134
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
M +SGG +R + I + P L+ DEP G D T +V+++ ++
Sbjct: 135 GAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189
Query: 179 AEA-GKTVVTTIH 190
A G T V H
Sbjct: 190 NSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 64
L+GI V PGE + L G +G+GK+TL+ +LSG T G I ++ P +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDT 123
++ I + Q+ L P L+V E + + LP RA +++ EL L+ T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
G + GG+++ V I + LL LDEP+S L ++ +++D+ G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 184 TVVTTIHQ 191
V H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 51/200 (25%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP----------------Y 60
PG+V+ ++GP+G GK+T L +L+G L P +G Y D P Y
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLG---RYEDPPSWDEVIKRFRGTELQNY 152
Query: 61 SKSLKS-------KIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAID 110
K L K +V L P + V E L K + + +
Sbjct: 153 FKKLYEGELRAVHKPQYVD----LIPKVVKGKVGELLK------------KVDERGKFDE 196
Query: 111 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
V+ LGLE D V +SGGE +RV I ++ + + F DEP+S LD L
Sbjct: 197 VVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251
Query: 171 IVQMLQDIAEAGKTVVTTIH 190
++++++AE GK V+ H
Sbjct: 252 AARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E+ +LN + + G+ +A++G SG GK+TLL LL+G +E G + P +++ +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG--LETPSAGELLAGTAPLAEA-R 80
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 124
+ QD L P V + + L L K Q A+ + +GL +R +
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVG----LGL-----KGQWRDAALQALAAVGLADRANE-- 129
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 183
+ +SGG+++RV + +I P LL LDEP LD+ T + + +++ + + G
Sbjct: 130 ----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 184 TVVTTIHQPS 193
TV+ H S
Sbjct: 186 TVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
+L ++ V GE + ++G +G+GK+TL+ L R +E G I + S L
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAE-EGKIEIDGIDISTIPLEDL 80
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+S + + QD LF T++ L D +E E +
Sbjct: 81 RSSLTIIPQDPTLFSG-TIRSNL----------------------DPFDEYSDEEIYGAL 117
Query: 125 I---GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
GG +S G+R+ +C+ ++ P +L LDE T+ +D T I + +++
Sbjct: 118 RVSEGGL---NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFT 173
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
T++T H+ + + +DK++++ G + +
Sbjct: 174 NSTILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYSK 62
L I V+ +V AL+GPSG GK+T L +L G E G I + D+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88
Query: 63 S-------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
S ++ +I V Q FP ++ E + Y LR+ + E+R + +
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYG--LRIRGVKRRSILEERVENALRNA 145
Query: 116 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L + +D + G +SGG+++R+CI + +P +L DEPTS LD I ++
Sbjct: 146 ALWDEVKDRL--GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215
+ D+ ++ T + + + + +G+ L+ FG
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE--LIEFG 242
|
Length = 265 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 3e-10
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYND 57
K +L+ + + +V A +GPSG GK+T L +L+ G E + G+ T +
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 58 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
S L+++IG V Q F +++ + + Y R ++ EK + L
Sbjct: 155 KISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 118 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ +D + +SGG+++R+CI I + P +L +DEPTS LD +I +++
Sbjct: 212 WDEVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269
Query: 177 DIAEAGKTVVTT 188
++ + ++ T
Sbjct: 270 ELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 5e-10
Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 5 EEKDI--LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDH 58
+E D+ LNG++ S+ GE ++++G +GSGK+T L+ G E + G + ++
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 59 PYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKR---AIDVIN 113
++ L+ KIG V Q+ D F TV++ + + + N + +++ KR A+ +N
Sbjct: 76 VWN--LRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALLAVN 129
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
L + + + SGG+++RV + I + P ++ LDE TS LD T I++
Sbjct: 130 MLDFKTREPARL--------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 174 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
++ +I E + V +I D+++++ G ++ SE A
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-10
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 66/182 (36%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
L+G++ SV GEV AL+G +G+GK+TL+ +LSG L +P G I + S +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG-LYKPD-SGEILVDGKEVSFASPRDAR 73
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
++ I V Q L+V E +Q +E
Sbjct: 74 RAGIAMVYQ-------LSVGE----------------RQM------------VE------ 92
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
I R ++ R ++I LDEPT+ L R+ ++++ + G
Sbjct: 93 I----ARALARNAR--------LLI------LDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 185 VV 186
V+
Sbjct: 135 VI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 5e-10
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITY-NDH 58
+ + IL G++ + +V A++GPSG GK+T LN ++ E V G + + N +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 59 PYSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
Y + L+ ++ V LFP ++V + + Y + + K ID I
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI-------VGWRPKLEIDDIV 127
Query: 114 ELGLERCQ-----DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
E L+ I S + +SGG+++R+CI + + P +L +DEP GLD +
Sbjct: 128 ESALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 169 LRIVQMLQDIA-EAGKTVVTTIH 190
+++ ++Q + + T+V H
Sbjct: 187 MKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYN-------- 56
N + S+ GE L ++G SGSGK+ L+ LL+ GR +GGS T+N
Sbjct: 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR-----IGGSATFNGREILNLP 87
Query: 57 DHPYSKSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
+ +K +I + QD + L P++ V E L +L L ++K + + ++ +++
Sbjct: 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAEAFEESVRMLDA 145
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+ + + M + SGG R+RV I ++ P LL DEPT+ LD T +I+ +
Sbjct: 146 VKMPEARKRM--KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 175 LQDIAEAGKTVVTTI 189
L ++ T + I
Sbjct: 204 LNELKREFNTAIIMI 218
|
Length = 330 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-10
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S E+ + + V+ GE L + G +G+GKTTLL +L+G L + G I + ++
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATR 77
Query: 63 SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+S+ + ++ L L+ E L + L + +Q A+ ++ GL +
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL---HGRRAKQMPGSALAIV---GLAGYE 131
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAE 180
DT+ VR +S G++KR+ + + L LDEP + LD + +M+ +
Sbjct: 132 DTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 181 AGKTVVTT 188
G +VTT
Sbjct: 187 GGAALVTT 194
|
Length = 214 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 46/195 (23%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 78
G+V ++GP+G GKTT + +LSG L+ P +G Y + P + D+VL
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELI-PNLGD---YEEEP------------SWDEVL- 140
Query: 79 PHLTVKETLTYAALLR---------------LP-------NTLTKQQKEKRAID-VINEL 115
E Y L +P L K+ E+ +D V+ L
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERL 200
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
GLE D I +SGGE +RV I ++ + F DEPTS LD L + +++
Sbjct: 201 GLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 176 QDIAEAGKTVVTTIH 190
+++AE GK V+ H
Sbjct: 256 RELAE-GKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
++ ++ S+ GE+L + G G+G+T L+ L G G++ N P +++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 65 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDV-INELGLER 119
++ I V +D + P L V + +T + L E + I I L ++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 120 CQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
IG +SGG +++ + ++ NP +L LDEPT G+D I +++ +
Sbjct: 395 ASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 179 AEAGKTVVTTIHQPSSRLFHKF---DKLILLGKGSL 211
A+ G ++ SS L D+++++G+G L
Sbjct: 450 AQEGVAIIVV----SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
G + GEV+ ++GP+G GKTT + LL+G +++P G S K + +++ D
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-VIKPDEGSEEDLK-----VSYKPQ--YISPD 413
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 134
+ TV++ L A ++ K +++ L LE + V +S
Sbjct: 414 ---YDG-TVEDLLRSAIRSAFGSSYFKT-------EIVKPLNLEDLLE-----RPVDELS 457
Query: 135 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH 190
GGE +RV I + L LDEP++ LD + + ++++ E KT + H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 64
L+ ++ V GE+++L G +G+GK+TL+ +LSG T G I + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLE 118
++ I + Q+ L L+V E + L N +T RA ++ +L L+
Sbjct: 81 RAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-DSTTA--LRIVQML 175
T V + G+++ V I + LL LDEPT+ L +S TA L I++ L
Sbjct: 135 INPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
Query: 176 QD 177
+
Sbjct: 190 KA 191
|
Length = 506 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKI--G 69
I+ V GE+L L G G+G+T L L G + P GG I N + S ++ G
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG--LRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 70 FV-----TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
V Q L+ L AL + + A+ LER + +
Sbjct: 340 LVYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAV-------LERYRRAL 390
Query: 125 IGGSF------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
F R +SGG +++V I + +P LL +DEPT G+D + I Q+++ I
Sbjct: 391 -NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
Query: 179 AEAGKTVV 186
A V+
Sbjct: 450 AAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTL------LNLLS-GRLMEPTVGGSI--TYNDHPYS 61
+ + + GE+ LMG SGSGK+TL LN +S G ++ GS+ D
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 62 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+ L++ + V Q L P TV+E + + ++ + K ++ KR + + +GL +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQW 157
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD--- 177
D G +SGG ++RV + +L +DEP S LD I LQD
Sbjct: 158 ADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPL----IRTQLQDELL 208
Query: 178 --IAEAGKTVVTTIH 190
++ KT+V H
Sbjct: 209 ELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQD 74
G+VL L+GP+G GK+T L +L+G+L P +G ++D P + + L G Q+
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG---KFDDPPDWDEILDEFRGSELQN 77
Query: 75 DVLFPHL---TVKETLTYAALLRLPNT-------LTKQQKEKRAID-VINELGLERCQDT 123
F L VK + + +P L K++ E+ +D ++++L L D
Sbjct: 78 --YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
I +SGGE +RV I + + F DEP+S LD L ++++++AE
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 184 TVVTTIH 190
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)
Query: 382 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKER-AADMYRLSAYFLARTTSDLPLNLVLPV 440
LL + + +E+ KER Y L + DL + L+
Sbjct: 97 LLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQ-- 154
Query: 441 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 500
L+I+ + GL + G L +L L +A LG +G++ + + A + S+ I+
Sbjct: 155 -LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILL 213
Query: 501 FM--LAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCA 558
G + + +P F+ WI + F LL+I Y D++ I +
Sbjct: 214 LSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDLAEI---------LLSLII 264
Query: 559 LVAMVFGYRLLAYL 572
L+ LLA L
Sbjct: 265 LLLFGVVLLLLALL 278
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 13 ITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYNDHPYSK-SLK 65
I+ SV GEV+ ++G SGSGK+ ++ L+ GR+M + +N + S K
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM----AEKLEFNGQDLQRISEK 81
Query: 66 SK-------IGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+ + + QD + L P TV + A +++ K+ + +RAID++N++G
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVG 139
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ + + +SGG +RV I I P LL DEPT+ LD T +I+++L
Sbjct: 140 IPDPASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
++ + + I + + K+I++ G ++ GKA +
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
Length = 326 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-09
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
K +L I+ ++NPG+ + L+G +G+GK+TLL L++G L EP G +T+
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDE-GIVTWGS------- 61
Query: 65 KSKIGFVTQ 73
KIG+ Q
Sbjct: 62 TVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 76
+ PG+V+A++G SG+GKTTLL ++ G + Y
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKG--------RGEEKYRPDSGKVEVPKNTVSA 457
Query: 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 136
L P + +L + +K A++++N GL D ++ +S G
Sbjct: 458 LIPG-EYEPEFGEVTILE--HLRSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELSTG 511
Query: 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR 195
+++R + + P++L +DE + LD TA+R+ + + ++A EAG T++ H+P
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 196 LFHKFDKLILLGKGS 210
+ D LIL+G G
Sbjct: 572 NALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + GE+LA+ G +GSGKT+LL L+ G L EP+ G I ++ +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPS-EGKIKHS---------GRI 100
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R V+ LE +D
Sbjct: 101 SFSSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLEEDITKFPEKD 149
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
++ IL+ I ++ PG + L+G +G+GK+TL+ LL+G L P G + +K +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSG------EIGLAKGI- 375
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
K+G+ Q + F L E+ L RL +Q+ D + G + + T
Sbjct: 376 -KLGYFAQHQLEF--LRADES-PLQHLARLAPQELEQKLR----DYLGGFGFQGDKVTEE 427
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
F SGGE+ R+ + + P+LL LDEPT+ LD + M Q + EA
Sbjct: 428 TRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQALTEA 472
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 31/239 (12%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYND- 57
TS ++ ++ ++N GE+ L+G SGSGK+ + + G + + ++D
Sbjct: 14 KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73
Query: 58 -------HPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQ----- 103
K + + + Q+ L P V L +P K +
Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRF 129
Query: 104 --KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161
+++RAI++++ +G++ +D M S+ ++ GE ++V I + P LL DEPT+
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220
++ TT +I ++L + + T + I + DK+ ++LY G+ E+
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI------NVLYCGQTVES 240
|
Length = 330 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 43/236 (18%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I+ + G++LA+ G +GSGK++LL ++ G L EP+ G I ++ +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPS-EGKIKHS---------GRI 489
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQD 122
F Q + P T+K+ + + E R VI LE +D
Sbjct: 490 SFSPQTSWIMPG-TIKDNIIFGL----------SYDEYRYTSVIKACQLEEDIALFPEKD 538
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAE 180
+ G +SGG+R R+ + + + L LD P + LD T I + + + ++
Sbjct: 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 181 AGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 229
+ +VT S+L H K DK++LL +G ++G SE A FSS +G
Sbjct: 599 KTRILVT------SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL 648
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 48/205 (23%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 62
LN ++ + GE+ ++G SG+GK+TL+ ++ L PT G + + +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPT-SGRVLVDGQDLTALSEKELR 78
Query: 63 SLKSKIGFVTQ-----------DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 111
+ +IG + Q D+V P L L T K + + R
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFDNVALP-------------LELAGT-PKAEIKAR---- 120
Query: 112 INEL----GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
+ EL GL D + +SGG+++RV I + NP +L DE TS LD T
Sbjct: 121 VTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 168 ALRIVQMLQDI-AEAGKTVVTTIHQ 191
I+++L+DI E G T+V H+
Sbjct: 176 TRSILELLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
G + GEV+ ++GP+G GKTT LL+G L +P G + KI + Q
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG----------EVDPELKISYKPQ- 407
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-------VINELGLERCQDTMIGG 127
++ T LLR + +I L LER D
Sbjct: 408 -----YIKPDYDGTVEDLLR---------SITDDLGSSYYKSEIIKPLQLERLLD----- 448
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTV 185
V+ +SGGE +RV I + + L LDEP++ LD L + + ++ IAE T
Sbjct: 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
+N ++ ++ GE+L + G G+G+T L+ +L G L P G +T + H L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSPQDGL 325
Query: 65 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAI-DVINELGLE 118
+ I ++++D D L ++VKE ++ AL K E++A+ D I ++
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 119 R-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+ IG +SGG +++V I ++ P +L LDEPT G+D
Sbjct: 386 TPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 63/197 (31%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP- 59
+ S ++ IL+ ++ VNPGE ++GP+G+GK+TLL+L++G DHP
Sbjct: 267 VVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG--------------DHPQ 312
Query: 60 -YSKSL----------------KSKIGFVTQDDVLFPHL------TVKETL--------- 87
YS L K IG+V+ HL +V+ +
Sbjct: 313 GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS----LHLDYRVSTSVRNVILSGFFDSIG 368
Query: 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147
Y A +QQ K A ++ LG+ D + +S G+++ I +
Sbjct: 369 IYQA------VSDRQQ--KLAQQWLDILGI----DKRTADAPFHSLSWGQQRLALIVRAL 416
Query: 148 IINPSLLFLDEPTSGLD 164
+ +P+LL LDEP GLD
Sbjct: 417 VKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 119
K L++ V+Q+ +LF ++++ E + + + T K+ + AID E L
Sbjct: 1292 KDLRNLFSIVSQEPMLF-NMSIYENIKFG---KEDATREDVKRACKFAAIDEFIE-SLPN 1346
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
DT +G + + +SGG+++R+ I ++ P +L LDE TS LDS + I + + DI
Sbjct: 1347 KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405
Query: 180 E-AGKTVVTTIHQPSSRLFHKFDKLILL 206
+ A KT++T H+ +S + DK+++
Sbjct: 1406 DKADKTIITIAHRIAS--IKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 16 SVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
S+ GE LA++G SGSGK+ T L L+ RL+E GG + + + + I Q
Sbjct: 38 SLQRGETLAIVGESGSGKSVTALALM--RLLEQA-GGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 75 DV--------------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
L P TV E + A +RL ++++ A ++++
Sbjct: 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASREEAMVEAKRMLDQ 152
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+ + Q I + +SGG R+RV I + P++L DEPT+ LD T +I+Q+
Sbjct: 153 VRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 175 LQ 176
++
Sbjct: 211 IK 212
|
Length = 623 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 64
+L+ T ++NPG+ + L+G +G GK+TLL LL + GGS T+ P + L
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTF---PGNWQLAWVN 70
Query: 65 -------KSKIGFVTQDDVLFPHLTVKETLTYA-------ALLRLPNTLTKQQK---EKR 107
+ + +V D + L + L A A+ + L R
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQ--LHDANERNDGHAIATIHGKLDAIDAWTIRSR 128
Query: 108 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
A +++ LG Q V SGG R R+ + +I LL LDEPT+ LD
Sbjct: 129 AASLLHGLGFSNEQLERP----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 36/265 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------- 61
LN + + +V ++G +GSGK+T++ L +G ++ T G D+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET--GQTIVGDYAIPANLKKIKE 84
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLE 118
K L+ +IG V Q FP + + + P L KQ+ K+ +++ + L
Sbjct: 85 VKRLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
D + F +SGG+++RV + I ++ + L LDEPT GLD + + + +
Sbjct: 141 E--DYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 179 -AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237
E K ++ H ++ D++I++ +G ++ G E FS+ +I ++P
Sbjct: 197 NKEYKKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSPFEI---FSNQELLTKIEIDP 252
Query: 238 AEFL----------LDLANGNLHDV 252
+ +DL N N+ +
Sbjct: 253 PKLYQLMYKLKNKGIDLLNKNIRTI 277
|
Length = 289 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-07
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 53/218 (24%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 62
K IL I+ S PG + ++G +G+GK+TLL +++G D +
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFEGEARP 66
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PN-----TLTKQ 102
+ K+G++ Q+ L P TV+E + AAL R P+ +Q
Sbjct: 67 APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQ 126
Query: 103 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 127 GELQEIIDAADAWDLDSQLEIAMDALRCPP---WDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+L LDEPT+ LD+ + + Q L D G TVV H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S E+ L+ I V G ++A++G +G GKT+L++ + G L P S+
Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVV-------- 676
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
++ + +V Q +F + TV++ + + + ++ +RAIDV L+ D
Sbjct: 677 -IRGTVAYVPQVSWIF-NATVRDNILFGSPF-------DPERYERAIDVT---ALQHDLD 724
Query: 123 TMIGGSFV----RGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
+ GG RGV SGG+++RV + + N + D+P S LD+ ++
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
GKT V +Q + D++IL+ +G + G E
Sbjct: 785 KDELRGKTRVLVTNQ--LHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 62
K +L + + PG+ + + G +GSGK++L L+ M G I + SK
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLH 91
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+L+S++ + QD +LF + +R + + R + + L+
Sbjct: 92 TLRSRLSIILQDPILF-----------SGSIRFNLDPECKCTDDRLWEALEIAQLKNMVK 140
Query: 123 TMIGGSFVRGVSGGE------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
++ GG GGE R+ C+ + S+L +DE T+ +D T I+Q +
Sbjct: 141 SLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKVV 199
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
A A +TVVT H+ S+ L D +++L +G L+ +A
Sbjct: 200 MTAFADRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTPENLLA 243
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 49/198 (24%), Positives = 99/198 (50%), Gaps = 29/198 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSLK 65
L+ I + G++ ++G G GK++LL + G + T+ G + ++ P ++ +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATR 74
Query: 66 SK----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLE 118
S+ + + Q L + TV+E +T+ + +Q+ K D + ++ L
Sbjct: 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLL 126
Query: 119 RCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-- 173
D T IG RG+ SGG+R+R+C+ + N +++FLD+P S LD + ++Q
Sbjct: 127 PFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEG 183
Query: 174 MLQDIAEAGKTVVTTIHQ 191
+L+ + + +T+V H+
Sbjct: 184 ILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-07
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
++ +L I+ + G +L L G +G+GKTTLL L++G L+ P G I + K L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG-LLNPE-KGEILFERQSIKKDL 69
Query: 65 ---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ ++ FV + P+LT++E Y + ++ LE
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLI 121
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
D G +S G++++V + + L LDEP LD + L I+ +Q+
Sbjct: 122 DYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 182 GKTVVTTIHQ 191
G V+ T HQ
Sbjct: 177 GGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
++ +L I SV +AL+G +GSGK+TL +LL G P G I + P S
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY--PLTEGEIRLDGRPLSSLS 409
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
L+ + V QD V+ A TL + E++ + + L
Sbjct: 410 HSVLRQGVAMVQQDPVVL-----------ADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 121 QDTMIGGSFVR------GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
++ G + +S G+++ + + ++ P +L LDE T+ +DS T I Q
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 175 LQDIAEAGKTVVTTIHQPSS 194
L + E T+V H+ S+
Sbjct: 519 LAAVREH-TTLVVIAHRLST 537
|
Length = 592 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSKS 63
+G+T + GE L ++G SG GK+T + G L++ T G + + ++
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKAT-DGEVAWLGKDLLGMKDDEWRA 95
Query: 64 LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLER 119
++S I + QD + L P +T+ E + A LR P L++Q+ + R ++ ++GL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEII--AEPLRTYHPK-LSRQEVKDRVKAMMLKVGL-- 150
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 178
+I + SGG+ +R+ I +I+ P L+ DEP S LD + ++V +LQ +
Sbjct: 151 -LPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208
Query: 179 AEAGKTVVTTIH 190
E G +++ H
Sbjct: 209 REMGLSLIFIAH 220
|
Length = 331 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 45/173 (26%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
+ + + + GE LA++G +G GKTTLL L G L EP G++ +++
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPD-SGTVKWSE------- 380
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ IG+ QD +A N LT D +++ E +
Sbjct: 381 NANIGYYAQD--------------HAY--DFENDLT-------LFDWMSQWRQEGDDEQA 417
Query: 125 IGGSF-------------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
+ G+ V+ +SGGE+ R+ G ++ P++L +DEPT+ +D
Sbjct: 418 VRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----D 57
S EK L+ + V GE L ++G +GSGK+T+ ++ L+ P+ G D
Sbjct: 18 EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSD 76
Query: 58 HPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+++K G V Q+ D V+E + + P L +E R
Sbjct: 77 EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGIPPEEIR--------- 122
Query: 117 LERCQDTM--IGGSFVRG-----VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169
ER +++ +G R +SGG+++RV I + + P + DEPT+ LD +
Sbjct: 123 -ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
Query: 170 RIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+V ++++ + G T++ H + + D++I++ G ++ G E
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAV--EADRIIVMDSGKVVMEGTPKE 230
|
Length = 280 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEPTVGGSITYNDHPY 60
S K L+ I + G ++A++G +G GKT+L++ + G L E +
Sbjct: 626 SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS------------ 673
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NELGL 117
S ++ + +V Q +F + TV+E + + + + ++ RAIDV ++L L
Sbjct: 674 SVVIRGSVAYVPQVSWIF-NATVRENILFGSDF-------ESERYWRAIDVTALQHDLDL 725
Query: 118 ERCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+D T IG RGV SGG+++RV + + N + D+P S LD+ A ++
Sbjct: 726 LPGRDLTEIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209
GKT V +Q D++IL+ +G
Sbjct: 783 CMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYSKSL 64
+L I+ S++PG+ + L+G +GSGK+TLL+ RL+ + + G +++N P K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDG-VSWNSVPLQKWR 76
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 122
K+ G + Q +F T ++ L P + ++ V E+GL+ +
Sbjct: 77 KA-FGVIPQKVFIFSG-TFRKNLD-------PY---GKWSDEEIWKVAEEVGLKSVIEQF 124
Query: 123 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
++ G V +S G ++ +C+ ++ +L LDEP++ LD T I + L+
Sbjct: 125 PGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182
Query: 177 DIAEAGKTVVTTIHQ 191
A A TV+ + H+
Sbjct: 183 Q-AFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 64
L+G +V PG V+AL+G +G+GK+T++ +L+G + GSI Y + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQ 77
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT----LTKQQKEKRAIDVINELGLERC 120
++ IG + Q+ L P LT+ E + L R + ++ A ++ L L
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166
D ++G +S GE++ V I + ++ +DEPT L T
Sbjct: 135 SDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
|
Length = 501 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
SGGE+ R+ + ++ NP+LL LDEPT+ LD + + + L++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-----SITY-NDH 58
E K +L ++ SV G++ ++G +GSGK+TLL L + E + G SI Y
Sbjct: 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQ 729
Query: 59 PY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116
+ + +++ I F ++D V+ + A L +L G
Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG------------------G 771
Query: 117 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
LE T IG V +SGG++ RV + + N + LD+P S LD+ R+V+
Sbjct: 772 LE----TEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
A AGKT V HQ + + D ++ LG G + + G +++ M
Sbjct: 827 LGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMR 870
|
Length = 1560 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
L+ I+ G+V+ L+G +GSGK+TL N++ G L PTVG + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGE----------VS 88
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVI--NELGLERCQDTMI 125
+ L LT E + + L + ++KE +A+ +I +ELG Q
Sbjct: 89 VIAISAGLSGQLTGIENIEFKMLC-----MGFKRKEIKAMTPKIIEFSELGEFIYQP--- 140
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
V+ S G R ++ I +NP +L +DE S D T A + + + + E KT+
Sbjct: 141 ----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196
Query: 186 VTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYF 224
H + +F K+ + G L +G+ + + +
Sbjct: 197 FFVSH--NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
Length = 264 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 24/168 (14%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+K +++ ++ + PG ++ ++GP+G+GK+TL +++G E G+I +
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG--QEQPDSGTIKIGE-------T 384
Query: 66 SKIGFVTQD-DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRA-IDVINELGLERCQD 122
K+ +V Q D L P+ TV E ++ +++ L K++ RA + N G + Q
Sbjct: 385 VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ----LGKREVPSRAYVGRFNFKGSD--QQ 438
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+G +SGGER RV + + ++L LDEPT+ LD T LR
Sbjct: 439 KKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET-LR 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 31/185 (16%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSKIGFVTQD 74
GE+L + G G+ +T ++ L G + G+I N+H ++++ VT++
Sbjct: 274 GEILGIAGLVGAKRTDIVETLFG--IREKSAGTITLHGKKINNHNANEAINHGFALVTEE 331
Query: 75 ----------DVLFPHL--TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQ 121
D+ F L ++ LL N+ K + VI+ + ++
Sbjct: 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLD--NSRMKSDTQW----VIDSMRVKTPGH 385
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
T IG +SGG +++V IG ++ P +L LDEPT G+D I Q++ ++A+
Sbjct: 386 RTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440
Query: 182 GKTVV 186
K ++
Sbjct: 441 DKGII 445
|
Length = 491 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L G++ + P E + ++G +GSGK+TLL L R++E GG I N + L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVE-VCGGEIRVNGREIGAYGLREL 1382
Query: 65 KSKIGFVTQDDVLF---------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+ + + QD VLF P L +AA L L + E ID
Sbjct: 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAA-LELVGLRERVASESEGID----- 1436
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSGLDSTTAL-RIVQ 173
R + GGS S G+R+ +C+ ++ S + +DE T+ +D AL R +Q
Sbjct: 1437 --SRVLE---GGS---NYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQ 1486
Query: 174 MLQDIAEAGKTVVTTIHQPSSRLFH---KFDKLILLGKGSLLYFGKASEAMAYFSSI 227
A + TV+T H RL H ++DK+I++ G++ G E + SI
Sbjct: 1487 ATVMSAFSAYTVITIAH----RL-HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
Length = 1560 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 7e-06
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 17 VNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYNDHPYSKSLKSK 67
+ E+ +GPSG GK+T+L +L+ G E V G Y ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
IG V Q F +++ + + + LRL N ++ + + +D +
Sbjct: 91 IGMVFQQPNPFS-MSIFDNVAFG--LRL-NRYKGDLGDRVKHALQGAALWDEVKDKLKVS 146
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+SGG+++R+CI I P +L LDEP S LD R+ +++ ++ + +
Sbjct: 147 GL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 188 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA--MAYFSSIGCSPQIAMNPAE 239
T H + I + + + S+ Y +G + QI NP E
Sbjct: 205 T---------HNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249
|
Length = 261 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLN---LLSGRLMEPTVGGSITYNDHPYSKSLKS 66
L + S+ ++ + G SGSGK+TL+N SG+ K ++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKAR---------LISFL-PKFSRN 60
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
K+ F+ Q L + L Y L + +TL
Sbjct: 61 KLIFIDQLQFL-----IDVGLGYLTLGQKLSTL--------------------------- 88
Query: 127 GSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184
SGGE +RV + +E+ P +L LDEP++GL +++++++ + + G T
Sbjct: 89 -------SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216
V+ H + D +I G GS GK
Sbjct: 142 VILIEHNL--DVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KS 63
+I + ++ G+ A +G SG GK+T+L L+ RL +PT G I + H K
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKW 457
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYA 90
+SKIG V+QD +LF + ++K + Y+
Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNIKYS 483
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 42/245 (17%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
LNGIT S+ G ++A++G G GK++LL+ L + + V G + +K +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVH---------MKGSVA 702
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 128
+V Q + +++E + + L Q+ A ++ +L + D T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEK----YYQQVLEACALLPDLEILPSGDRTEIGEK 757
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-------MLQDIAEA 181
V +SGG+++RV + + N + D+P S +D+ I + +L
Sbjct: 758 GV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL-----K 811
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
KT + H S + D +I++ G + G E + + AEFL
Sbjct: 812 NKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGAF----------AEFL 859
Query: 242 LDLAN 246
A
Sbjct: 860 RTYAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 27/188 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
LN I+ V GE++ ++G +GSGK+TL NL++G M P G + +K
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKG----------TVDIKGSAA 88
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 129
+ L LT E + L+ LTK++ ++ ++I + G F
Sbjct: 89 LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADI---------GKF 136
Query: 130 ----VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
V+ S G + R+ + INP +L +DE S D T + + + + E GKT+
Sbjct: 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196
Query: 186 VTTIHQPS 193
H S
Sbjct: 197 FFISHSLS 204
|
Length = 549 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 64/201 (31%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 78
PGEV+ ++GP GSGKTTL L R + P GG I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL-ARELGPPGGGVIYIDG--------------------- 38
Query: 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 138
E + L +L + +K + ++ L L +
Sbjct: 39 ------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--------------- 77
Query: 139 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIHQP 192
P +L LDE TS LD+ ++ + L +E TV+ T +
Sbjct: 78 -----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 193 ----SSRLFHKFDKLILLGKG 209
+ L +FD+ I+L
Sbjct: 127 KDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLL----SGRLMEPTVGGSITYNDHPYS-----KSLKS 66
S+ GE+L + G G+G+T L+ L GR G I + P +++
Sbjct: 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-----GEIFIDGKPVKIRNPQQAIAQ 338
Query: 67 KIGFVTQD---DVLFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLERCQ 121
I V +D D + P + V + +T AAL R + + + K ++ I L + +
Sbjct: 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-KTA 397
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ + +SGG +++ + +++NP +L LDEPT G+D I +++ + +
Sbjct: 398 SPELA---IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
Query: 182 GKTVV 186
G ++
Sbjct: 455 GVAII 459
|
Length = 506 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 12 GITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTV---GGSITYNDHPYS-KSLKS 66
G++ ++ G VLAL+G SGSGK+ T L ++ V G + + P + +L+
Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALG--ILPAGVRQTAGRVLLDGKPVAPCALRG 78
Query: 67 K-IGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
+ I + Q+ P T +ET AL + + + + +GLE
Sbjct: 79 RKIATIMQNPRSAFNPLHTMHTHARETC--LALGKPAD-------DATLTAALEAVGLE- 128
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+ + +SGG +R+ I ++ + DEPT+ LD RI+ +L+ I
Sbjct: 129 -NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
Query: 180 E 180
+
Sbjct: 188 Q 188
|
Length = 254 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 104 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163
+++RAI++++ +G++ +D M SF ++ GE ++V I + P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKDHKDAM--RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220
+ TT +I ++L + + T + I L DK+ ++LY G+ E
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI------NVLYCGQTVET 240
|
Length = 330 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDH 58
+ + +L ++ SV G+ + L+G +GSGK+TLL+ L RL+ E + G +++N
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDG-VSWNSV 1285
Query: 59 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 117
K+ G + Q +F K Y Q ++ V E+GL
Sbjct: 1286 TLQTWRKA-FGVIPQKVFIFSGTFRKNLDPYE-----------QWSDEEIWKVAEEVGLK 1333
Query: 118 ---ERCQD----TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
E+ D ++ G +V +S G ++ +C+ I+ +L LDEP++ LD T L+
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQ 1390
Query: 171 IVQMLQDIAEAGKTVVTTIHQ 191
I++ + + TV+ + H+
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 38/214 (17%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSL---K 65
+ I ++ GE++ L+G +GSGK+TL LL+G L +P G I + P S + L +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG-LYQPQSGE-ILLDGKPVSAEQLEDYR 396
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-- 123
V D LF L E +A + E L+R +
Sbjct: 397 KLFSAVFSDYHLFDQLL--------------------GPEGKASPQLIEKWLQRLELAHK 436
Query: 124 --MIGGSFVR-GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQD 177
+ G F +S G++KR+ + ++ +L LDE + D A R +L
Sbjct: 437 TSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPL 494
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
+ E GKT+ H F D+L+ + G L
Sbjct: 495 LKEQGKTIFAISH--DDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
L I + G+++ ++G +G GK+TL L G L P G I + S
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQ-EGEILLDGAAVSAD------ 409
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-KRAIDVINELGLERCQDTMIGG- 127
++DD + L + L + A + L + GG
Sbjct: 410 --SRDD--YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGF 465
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQDIAEAGKT 184
S +S G++KR+ + + + +L DE + D A + ++L D+ GKT
Sbjct: 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKT 523
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLL 212
++ H + F D++I L G ++
Sbjct: 524 IIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 116 GLERCQDTMIGGSFVRGVSGGERKRVCI----GNEIIINPSLLFLDEPTSGLDSTTALRI 171
G + +SGGE++ + + L LDE GLD +
Sbjct: 61 GCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120
Query: 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208
+ + + G V+ H P L DKLI + K
Sbjct: 121 AEAILEHLVKGAQVIVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 50
+ K ++ + V G+ +AL+GP+G GKTTLL L+ G+L + G
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG 374
|
Length = 635 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 20/221 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
+L+G++ V+P E + ++G +G+GK+++LN L R++E G I +D +K L
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE-LEKGRIMIDDCDVAKFGLTDL 1308
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI--NELGLERCQD 122
+ + + Q VLF TV+ + + + L + + DVI N GL+ +
Sbjct: 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDAD-LWEALERAHIKDVIDRNPFGLD-AEV 1365
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEA 181
+ G +F S G+R+ + + ++ +L LDE T+ +D +R ++Q I E
Sbjct: 1366 SEGGENF----SVGQRQLLSLARALLRRSKILVLDEATASVD----VRTDSLIQRTIREE 1417
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
K+ + DK+++L G +L + E ++
Sbjct: 1418 FKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRL 44
G+ L G SG GK+TLLN L L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRL 44
G+ L+G SG GK+TLLN L L
Sbjct: 85 GKTSVLVGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 134 SGGERKRVCIGNEIIINPS----LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
SGGE +R+ + E+ S L LDEPT+GL +++++LQ + + G TVV
Sbjct: 171 SGGEAQRIKLAKELS-KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 190 HQ 191
H
Sbjct: 230 HN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSK 67
I+ SV GE++ L G G+G++ L+ LL G G + + P ++++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG--ATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
Query: 68 IGFVTQD---DVLFPHLTVKETLTYAA---LLRLPNTLTKQQKEKRAIDVINELGLE-RC 120
I +D + + P +V + + +A LR + + + + A I L ++
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
++ +I +SGG +++ +G + + ++ LDEPT G+D I ++ ++A
Sbjct: 390 REQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 181 AGKTVV 186
G V+
Sbjct: 445 QGVAVL 450
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 64/178 (35%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD- 74
S+ PG ++ ++GP+G+GK+TL +++G+ E G+I + K+ +V Q
Sbjct: 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-------TVKLAYVDQSR 396
Query: 75 DVLFPHLTVKETLTYAA-LLRLPNTLTK--------------QQKEKRAIDVINELGLER 119
D L P+ TV E ++ ++++ N QQK
Sbjct: 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK--------------- 441
Query: 120 CQDTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALR 170
V +SGGER R+ + GN +L LDEPT+ LD T LR
Sbjct: 442 ---------KVGVLSGGERNRLHLAKTLKQGGN-------VLLLDEPTNDLDVET-LR 482
|
Length = 556 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82
+A++GP+G GK+T+L L+SG L +P+ G +S K ++ +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL-QPSSGTVF--------RSAKVRMAVFSQHHVDGLDLS 588
Query: 83 VKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGLERCQDTMIGGSFVRGVSGGERK 139
L P +QK + + V L L+ + +SGG++
Sbjct: 589 SNPLLYMMRC--FPGVP--EQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKS 634
Query: 140 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
RV P +L LDEP++ LD ++Q L
Sbjct: 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
|
Length = 718 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43
S+ + + L+ + ++ G+ +AL+G SG GK+TL+N L G
Sbjct: 177 VSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218
|
Length = 356 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 190
+SGGE +RV I ++ N + DEP++ LD L + ++ ++E G KT + H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 133 VSGGERKRVCIGNEIII---NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
+SGGE +R+ + E++ P+L LDEPT+GL + ++ +LQ + G TVV
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 190 H 190
H
Sbjct: 870 H 870
|
Length = 1809 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PT-----------VGGSI 53
+D++ + ++ G L+G +G+GKTT L ++ ++ P VG
Sbjct: 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249
Query: 54 TY------NDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETL-TYAALLRLPNTLTKQQKE 105
T D ++ L+ + V Q ++ F T K + + + ++
Sbjct: 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIY 309
Query: 106 KRAIDVINELGLE-RCQDTMIGGSF--------VRGVSGGERKRVCIGNEIIINPSLLFL 156
KR +++I+ E R + G SF + SGG R R+ + + I P LL L
Sbjct: 310 KR-LELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 157 DEPTSGLD 164
DEPT+ LD
Sbjct: 369 DEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.0 bits (90), Expect = 0.004
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 129 FVRGVSGGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
++G+S G ++ + + ++ SLL +DEP +GL ++V++L++++E G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 186 VTTIHQPS 193
+ T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.98 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.91 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.88 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.87 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.84 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.83 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.83 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.82 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.82 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.81 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.79 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.78 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.74 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.74 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.73 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.68 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.67 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.65 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.61 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.61 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.54 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.52 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.49 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.46 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.45 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.45 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.38 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.36 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.36 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.36 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.35 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.31 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.3 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.28 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.28 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.28 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.27 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.25 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.25 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.25 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.24 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.24 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.23 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.22 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.22 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.18 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.13 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.1 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.09 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.07 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.05 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.04 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.03 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.97 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.96 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.95 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.94 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.9 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.89 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.89 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.81 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.79 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.79 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.78 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.75 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.73 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.68 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.61 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.59 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.58 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.56 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.55 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.55 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.55 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.54 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.54 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.53 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.5 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.39 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.34 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.31 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.31 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.3 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.27 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.24 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.22 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.2 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.18 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.14 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 98.13 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.11 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.1 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.07 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.06 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.05 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.03 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.01 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.01 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.99 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.99 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.98 |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-106 Score=905.84 Aligned_cols=552 Identities=49% Similarity=0.887 Sum_probs=467.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||++||+||||||||||||+|+|+......+|+|.+||+++.+..++++|||+|++.+++.+||+
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 46789999999999999999999999999999999999764222589999999987655567799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+++.++.+...++++++++++++++.+||+++.|+.+|+..+++||||||||++||++|+.+|++|+|||||+|||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 99999988776655566777788999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHh
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDL 244 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~ 244 (583)
+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|++++.|+++++.+||+++|++||++.|||||++|+
T Consensus 239 ~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv 318 (659)
T PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDL 318 (659)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Confidence 99999999999999988999999999998778899999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhh--c-CCCCCcHHH---hhhc-CC
Q 007952 245 ANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SS 317 (583)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~ 317 (583)
++.+......... ..+ ...+.+.+.|++...+...... . ......+.. .... ..
T Consensus 319 ~~~~~~~~~~~~~----------------~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (659)
T PLN03211 319 ANGVCQTDGVSER----------------EKP---NVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRS 379 (659)
T ss_pred cCccccCCCcccc----------------ccc---hHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhccccccccc
Confidence 8754211000000 000 0011122222211100000000 0 000000000 0000 01
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007952 318 PKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 318 ~~~~~~~s~~~q~~~l~~R~~~~~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
.++.+.++||+|+.+|++|+++++|++.+.+.|+++.+++|+++|++||+++ +.++++|.|++||+++++++.+++.
T Consensus 380 ~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~ 456 (659)
T PLN03211 380 SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFN 456 (659)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123557899999999999999999998888999999999999999999984 5789999999999999988888889
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
+++.|+.||++|+||+++|+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+||+|++++++..++++++|
T Consensus 457 ~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 457 SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhccCHHHHHHHHHHHHHcCCCCC-----CCC-------
Q 007952 478 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISP-----IVN------- 545 (583)
Q Consensus 478 ~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~-----~~~------- 545 (583)
+++|+++||...|+.+++++++++++|+||++++||+||+|++|+||++||||+++.|||++... .+.
T Consensus 537 ~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~ 616 (659)
T PLN03211 537 LALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR 616 (659)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999976321 111
Q ss_pred ---------CcccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 546 ---------GMRTDSGFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 546 ---------g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
+.+....|.++++|++++++||+++|++|++.+
T Consensus 617 ~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 617 ASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111224578999999999999999999999765
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-105 Score=896.24 Aligned_cols=546 Identities=43% Similarity=0.751 Sum_probs=474.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCC-ccccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.|++|+|||++++|||++|||||||||||||||+|+|+...+ ..+|+|.+||++.. +..++.+|||+|||.++|++||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 589999999999999999999999999999999999998653 58999999997665 4578889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|+|.|+|.+|+|.+.++++++++|+++++++||++|+|+++|+...|++||||||||+||.+|++||+||+||||||||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 243 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~ 243 (583)
|+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|
T Consensus 202 DS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~ 281 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLD 281 (613)
T ss_pred chhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcCCCCCCCC
Q 007952 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWG 323 (583)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (583)
+++.+ .. ..+..+..+..... ...+. . ....+... ++ .+.... . ........
T Consensus 282 l~s~~-~~---~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~-~~--------~~~~~~------~-----~~~~~~~~ 333 (613)
T KOG0061|consen 282 LLSVD-SG---TRELEEAVRIAKLI-NKFSQ-T--DNLKKTLE-AL--------EKSLST------S-----KKVEIGTS 333 (613)
T ss_pred HHccC-CC---chhHHhHHHHHHHh-hhccc-c--chhhhhHH-HH--------hhhccc------c-----cccccccC
Confidence 98754 10 00111000000000 00000 0 00000000 00 000000 0 00001116
Q ss_pred CCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 324 ASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTF 402 (583)
Q Consensus 324 ~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~ 402 (583)
++||.|+++|++|.+++ .|++.+.+.|+++.+.+|+++|++||+.+. +++++++|.|++||++.++.+.+++++++.|
T Consensus 334 ~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 334 PSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 89999999999999998 677888899999999999999999999964 5788889999999999999899988899999
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 403 PQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGA 482 (583)
Q Consensus 403 ~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~ 482 (583)
++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++|+++++
T Consensus 413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~ 492 (613)
T KOG0061|consen 413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA 492 (613)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCC-CCC-------C---------
Q 007952 483 ILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYAD-ISP-------I--------- 543 (583)
Q Consensus 483 ~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~-~~~-------~--------- 543 (583)
++||...|+.+++++++++++|+||+++ ++|.||+|++|+||++|+||+++.|||.+ ... .
T Consensus 493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred hccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHH
Confidence 9999999999999999999999999997 89999999999999999999999999985 111 0
Q ss_pred -CCCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 544 -VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 544 -~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
..+++.++.|.|+.++++++++||+++|++|++..++
T Consensus 573 ~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 573 KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0123345678999999999999999999999886654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-101 Score=867.46 Aligned_cols=553 Identities=34% Similarity=0.589 Sum_probs=470.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc-cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~l 81 (583)
.++|++|+|+|+++++||+++|+|||||||||||++|+|+.... ..+|+|.+||.+++. ..++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34688999999999999999999999999999999999976422 247999999998763 4577899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-cCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+. ..++||||||||++||++|+.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 99999999999988877778888889999999999999999999975 36899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~ 240 (583)
+|||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|+++|+|+++++.+||+++|++||++.||+||
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 99999999999999999998899999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhH-HHHhhhcCCCCCcHHH-hhhcCCC
Q 007952 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE-NEKKKLMAPIPLDEEI-KAKVSSP 318 (583)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 318 (583)
++++++.+......+ . ...+.+.+.|++.... ................ +......
T Consensus 275 ~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (617)
T TIGR00955 275 YVQVLAVIPGSENES---R--------------------ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENME 331 (617)
T ss_pred HHHHhhcCcccccch---H--------------------HHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccc
Confidence 999986432110000 0 0001111111111000 0000000000000000 0000012
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007952 319 KRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 319 ~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
...+..+|++|+.+|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|++|+++++.+|.+++.
T Consensus 332 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 332 GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346789999999999999986 688888889999999999999999999975 57899999999999999888888888
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
++..|+.||++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||.|++++++..++++++|
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCC-C---------C-
Q 007952 478 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISP-I---------V- 544 (583)
Q Consensus 478 ~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~-~---------~- 544 (583)
+++++++||...|..+++++++++++|+||+++ +||+||+|++|+||++||||+++.|||.+... . +
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 999999999999999999999999999999997 89999999999999999999999999987432 1 1
Q ss_pred ---------CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 545 ---------NGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 545 ---------~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
.|++.++.|.++++|+++.++|++++|++|++..++
T Consensus 571 ~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 571 SSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred cChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 133344568899999999999999999999875443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-97 Score=892.78 Aligned_cols=555 Identities=26% Similarity=0.420 Sum_probs=462.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc---cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~ 79 (583)
.+++||+|+|+++++||+++|+||||||||||||+|+|+... .+.+|+|.+||+++.+ ..++.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 457799999999999999999999999999999999997531 3478999999987642 34667999999999999
Q ss_pred CCCHHHHHHHHHHcCCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.|++.++.|. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877653 2344554444 56789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQI 233 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~ 233 (583)
+|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999875 9999999999988899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHh------hhHHHHh-hhcCCCC
Q 007952 234 AMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETR------VAENEKK-KLMAPIP 306 (583)
Q Consensus 234 ~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~ 306 (583)
+.|||||++++++.+.+.... ..++.. ....+ .+.+.|+++ ..+.+.. +......
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~--~~e~~~------------~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKP--GYEKKV------------PRTPQ----EFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred CCChHHHHHhccChhhhhccc--cccccC------------CCCHH----HHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 999999999998654321110 000000 00111 112222111 0000000 0000000
Q ss_pred Cc-------HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHH
Q 007952 307 LD-------EEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 378 (583)
Q Consensus 307 ~~-------~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~ 378 (583)
.. ...+.......+.+..|+|+|+++|++|++++ +|++...+.|+++.+++|+++|++||+++. +++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~ 452 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYS 452 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHH
Confidence 00 00000111233457889999999999999987 677778899999999999999999999975 5689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHH
Q 007952 379 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 458 (583)
Q Consensus 379 ~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~ 458 (583)
|.|++||++++.++.++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++
T Consensus 453 r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~ 531 (1394)
T TIGR00956 453 RGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGR 531 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHH
Confidence 99999999999888774 56777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHH
Q 007952 459 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQ 536 (583)
Q Consensus 459 f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~e 536 (583)
||+|+++++++.++++++++++|+++||...|+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.||
T Consensus 532 Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ne 611 (1394)
T TIGR00956 532 FFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNE 611 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred cCCCCCCC--------------------------------C---------CcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 007952 537 YADISPIV--------------------------------N---------GMRTDSGFREVCALVAMVFGYRLLAYLSLR 575 (583)
Q Consensus 537 f~~~~~~~--------------------------------~---------g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~ 575 (583)
|++....+ . |++.++.|.|+++|+++.++|++++++++.
T Consensus 612 f~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~ 691 (1394)
T TIGR00956 612 FHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTE 691 (1394)
T ss_pred hcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 97632111 1 122334588999999999999999999999
Q ss_pred Hhhh
Q 007952 576 KMKL 579 (583)
Q Consensus 576 ~~~~ 579 (583)
+.+.
T Consensus 692 ~~~~ 695 (1394)
T TIGR00956 692 FNKG 695 (1394)
T ss_pred hccc
Confidence 8773
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-96 Score=882.51 Aligned_cols=548 Identities=27% Similarity=0.464 Sum_probs=467.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|+|++++|||+++|+||||||||||||+|+|+...++.+|+|.+||++..+ ..++.+|||+|+|.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 3457999999999999999999999999999999999986544578999999988753 356779999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|||.|++.++.|...+++++.++++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++|||||||+||
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998888776667777778899999999999999999987777899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEcCh----hhHHHHHHhc-CC-CCCCCCC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SEAMAYFSSI-GC-SPQIAMN 236 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~-~~~~~~n 236 (583)
|+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|++ +++++||+++ |. +||+..|
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~N 1130 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999999998778899999999996 899999996 6899999998 66 4899999
Q ss_pred hHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcC
Q 007952 237 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 237 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
||||++++++.+... ....+.. +.++.++ .|++..... .....+.+.. ...
T Consensus 1131 PAd~~l~v~~~~~~~-~~~~d~~----------~~~~~s~-----------~~~~~~~~~--~~~~~~~~~~-----~~~ 1181 (1470)
T PLN03140 1131 PATWMLEVSSLAAEV-KLGIDFA----------EHYKSSS-----------LYQRNKALV--KELSTPPPGA-----SDL 1181 (1470)
T ss_pred chhhhhhhhcccccc-cccchHH----------HHHhccH-----------HHHHHHHHH--HHhccCCCCc-----ccc
Confidence 999999997532110 0000000 0011000 011100000 0111111100 011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKS--PKGLEDQAGLLFFIAVFWSFF 393 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~--~~~~~~~~g~lf~~~~~~~~~ 393 (583)
....++..++|+|+..|++|++++ +|++.+.+.|+++.+++|+++|++||+++++. ..+++++.|++|+.+++.++.
T Consensus 1182 ~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 1261 (1470)
T PLN03140 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGIN 1261 (1470)
T ss_pred ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 123457889999999999999986 89999999999999999999999999997542 357888999999999888877
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007952 394 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 394 ~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~ 473 (583)
.+...++.|+.||++|+|||++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++..||+|+++++++.+++
T Consensus 1262 ~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~ 1341 (1470)
T PLN03140 1262 NCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYF 1341 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 76677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC--C-----
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI--V----- 544 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~--~----- 544 (583)
+++|+++++++||.++|..+++++++++++|+||++| +||+||+|++|+||++|++++++.|||++.... +
T Consensus 1342 ~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~ 1421 (1470)
T PLN03140 1342 TYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAP 1421 (1470)
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCC
Confidence 9999999999999999999999999999999999997 899999999999999999999999999885431 1
Q ss_pred -----------CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007952 545 -----------NGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 581 (583)
Q Consensus 545 -----------~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~~ 581 (583)
.|++.+..|.++++++++.++|++++++++++.++++
T Consensus 1422 ~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1422 DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 2334455678999999999999999999999998775
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-96 Score=878.01 Aligned_cols=555 Identities=25% Similarity=0.400 Sum_probs=456.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCcc-ccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~-~~~~i~yv~Q~~~~~~~lT 82 (583)
.++.||+|+|+.++|||+++|+||||||||||||+|+|++.+. ..+|+|.+||+++.+. .++.++||+|+|.+++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4578999999999999999999999999999999999986421 2489999999987542 3677999999999999999
Q ss_pred HHHHHHHHHHcCCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccCc
Q 007952 83 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 83 v~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
|+|||.|++.++.+. ..+++++ +..++++++.+||++|+||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998776321 1112221 123578999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 489999999999888999999999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 007952 211 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 290 (583)
Q Consensus 211 iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (583)
++|+||++++.+||+++|++||++.|||||++++++.+... .... . ...+......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~--------~~~~-~-------~~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE--------QYWA-D-------RNKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh--------hhhh-c-------cCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998642110 0000 0 000000001122334443
Q ss_pred HhhhH-HHHhhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC
Q 007952 291 TRVAE-NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 368 (583)
Q Consensus 291 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~ 368 (583)
+.... ....+...+ .++..........+.|..+++.|++.|++|+++. +||+..++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22110 000111111 1111001111223458889999999999999986 6777788899999999999999999998
Q ss_pred CCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007952 369 DSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 446 (583)
Q Consensus 369 ~~~~--~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~ 446 (583)
+.+. ..+.+.+.|++||++++.++.+ +..+..++.||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6431 2345678899999888877655 577899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCH
Q 007952 447 YFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSF 524 (583)
Q Consensus 447 Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~ 524 (583)
|||+||++++++||+|+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++ +||+||+|++|+||
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp 716 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---------CC--------CCcccCc--chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 525 NFHTYKILLKIQYADISP---------IV--------NGMRTDS--GFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 525 ~~ya~~~l~~~ef~~~~~---------~~--------~g~~~~~--~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
++|||||++.|||.+... .. .|+..++ .|.++++|++++++|++++|++|++.+
T Consensus 717 ~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 717 LSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999965421 11 1333332 377899999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-92 Score=851.02 Aligned_cols=544 Identities=29% Similarity=0.471 Sum_probs=454.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|||+++++||++||+||||||||||||+|+|+...+ +.+|+|.+||+++.+..++.+|||+|+|.+++.+||
T Consensus 774 ~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 3568999999999999999999999999999999999986422 467999999999866677889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC-EEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~-illLDEPtsg 162 (583)
+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+. ..+||||||||++||++|+.+|+ +|+|||||+|
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsg 932 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCC
Confidence 999999998887766677777889999999999999999998743 34899999999999999999997 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC-eEEEEcCh----hhHHHHHHhcCC-CCCCCCC
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----SEAMAYFSSIGC-SPQIAMN 236 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~n 236 (583)
||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++++||++.|+ +||++.|
T Consensus 933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999889999999999987778899999999987 99999997 578999999996 9999999
Q ss_pred hHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcC
Q 007952 237 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 237 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
||||++|+++....... .....+ .++.++...... +... ....+...... . ...
T Consensus 1013 pAd~~ldvi~~~~~~~~-~~~~~~----------~~~~s~~~~~~~--------~~~~-----~~~~~~~~~~~-~-~~~ 1066 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAHA-NQDYHE----------VWRNSSEYQAVK--------NELD-----RLEAELSKAED-D-NDP 1066 (1394)
T ss_pred HHHHHHHHhhcccccch-hccHHH----------HHhcCHHHHHHH--------HHHH-----HhhcccccCcc-c-ccc
Confidence 99999999864321100 000000 011110000000 0000 00000000000 0 001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 395 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 395 (583)
....++.+||++|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++++|.|++|+.+++.++. +
T Consensus 1067 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i~~~~g~~f~~~~~~~~~-~ 1144 (1394)
T TIGR00956 1067 DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGLQNQMFAVFMATVLFNPL-I 1144 (1394)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHH-H
Confidence 122457889999999999999986 799889999999999999999999999975 5789999999999988766554 3
Q ss_pred HHHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHH-------HHHHHHHHH
Q 007952 396 FTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP-------FFLSMLTVF 467 (583)
Q Consensus 396 ~~~i~~~~~er~v~-~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~ 467 (583)
...++.|+.||.+| +|||++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.. |++|+++++
T Consensus 1145 ~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~ 1224 (1394)
T TIGR00956 1145 QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLST 1224 (1394)
T ss_pred HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHH
Confidence 46778899999886 8999999999999999999999999999999999999999999988765 999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC--
Q 007952 468 LSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI-- 543 (583)
Q Consensus 468 l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~-- 543 (583)
+..++++++|+++++++||..+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.|||.+.+..
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~ 1304 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecC
Confidence 9999999999999999999999999999999999999999997 899999999999999999999999999874310
Q ss_pred --------------------------------------C------C--------CcccCcchhhHHHHHHHHHHHHHHHH
Q 007952 544 --------------------------------------V------N--------GMRTDSGFREVCALVAMVFGYRLLAY 571 (583)
Q Consensus 544 --------------------------------------~------~--------g~~~~~~~~~~~~l~~~~~~~~~l~~ 571 (583)
+ + |+..++.|+|+++++++++++ ++++
T Consensus 1305 ~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~ 1383 (1394)
T TIGR00956 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIAT 1383 (1394)
T ss_pred ccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHH
Confidence 0 0 122345588999999999888 8999
Q ss_pred HHHHHhh
Q 007952 572 LSLRKMK 578 (583)
Q Consensus 572 ~~L~~~~ 578 (583)
++|++..
T Consensus 1384 ~~l~~~~ 1390 (1394)
T TIGR00956 1384 VFFYWLA 1390 (1394)
T ss_pred HhhheEE
Confidence 9997754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-93 Score=809.54 Aligned_cols=549 Identities=29% Similarity=0.499 Sum_probs=467.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-ccccccEEEEccCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~~~~~~l 81 (583)
.++.+++|+|||+.++||.++||||+||||||||||+|+||...+..+|+|.+||.|.+ +.++|.+|||.|+|.|.|.+
T Consensus 800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 34678999999999999999999999999999999999999877778999999999988 66889999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC-CEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p-~illLDEPt 160 (583)
||||.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+|+.|| .||||||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 999999999999999999999999999999999999999999999766 999999999999999999999 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEcChh----hHHHHHHhcC-CCCCCC
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----EAMAYFSSIG-CSPQIA 234 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~ 234 (583)
||||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||.||.. .+++||+++| .+||+.
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~ 1038 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISD 1038 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCC
Confidence 999999999999999999999999999999999999999999999986 6999999975 4677999987 789888
Q ss_pred CChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhh
Q 007952 235 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 314 (583)
Q Consensus 235 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (583)
.|||||++|+++..... + ...+.++.|+.++. |++..+ .-++..++.+. ...
T Consensus 1039 ~NPA~~mLevi~~~~~~-----~------~~~D~a~~w~~S~e-----------~k~~~e--~v~~l~~~~~~----~~~ 1090 (1391)
T KOG0065|consen 1039 ENPAEWMLEVIGAGAEA-----S------LSVDFAEIWKNSEE-----------YKRNKE--LVKELSQPPPG----FST 1090 (1391)
T ss_pred CChHHHHHhhccccccc-----c------cCccHHHHHhccHH-----------HHHHHH--HHHHHhcCCcc----CCc
Confidence 89999999998642111 0 00011111211111 111111 11112222221 111
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 007952 315 VSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFF 393 (583)
Q Consensus 315 ~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~ 393 (583)
....++++..|+|.|++.+++|++.. ||+|.+.++|++..++.||++|+.||+.+ ++..++||..|++|+.+++.+-.
T Consensus 1091 ~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lqn~m~a~yma~v~~~~~ 1169 (1391)
T KOG0065|consen 1091 DLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQNAMGAAYMATVFSGPN 1169 (1391)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHHHHHHHHHHHHHHhhhh
Confidence 22345668899999999999999875 89999999999999999999999999998 56889999999999988765433
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007952 394 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 394 ~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~ 473 (583)
..-...+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.++.|+++|+..++.+|++|++.++++.++.
T Consensus 1170 ~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf 1249 (1391)
T KOG0065|consen 1170 NNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYF 1249 (1391)
T ss_pred hhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHH
Confidence 22233466678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCC-------
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIV------- 544 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~------- 544 (583)
+.+|+++.+++||.++|..+++.+..++.+|+|+++| .||.||+||+|+||+.|-.++++..+++|.+..+
T Consensus 1250 ~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~ 1329 (1391)
T KOG0065|consen 1250 TTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNY 1329 (1391)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccc
Confidence 9999999999999999999999999999999999997 7999999999999999999999999998754321
Q ss_pred ----CCcc----------------cCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007952 545 ----NGMR----------------TDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 581 (583)
Q Consensus 545 ----~g~~----------------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~~ 581 (583)
.|.. .+......++..++.+++.+++.+.+++.++.+
T Consensus 1330 ~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1330 FDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred cCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 2221 111112345666788999999999999987654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-87 Score=759.73 Aligned_cols=554 Identities=30% Similarity=0.504 Sum_probs=463.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccc-cccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~~~~~~lTv 83 (583)
...+|+|+|+-++||+++.++||+||||||||++|+|.+... ...|+|.+||++.++.. ++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 24679999999886533 5779999999999999999
Q ss_pred HHHHHHHHHcCCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 84 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||++||..+|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999998732 23333332 5778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 237 (583)
+|+|||+.++.++++.||++++. +.|.++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||+..++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999875 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhh-HHHHhhhcCCCCCcHHHhhhcC
Q 007952 238 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVA-ENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 238 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
|||+.++++..... .+ ..++ + ........++..+ .+.+... .....+... +.++..+....
T Consensus 367 ADfLt~vts~k~~~--~~--~~~~-----~---~~~~~~~~~ef~~----~~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQE--QY--WNKR-----S---KPYPYTSVSEFAE----YFLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCcccc--cc--cccc-----C---CCcccCCHHHHHH----HHhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 99999998721110 00 0000 0 0000011122222 2211100 001111111 11111112223
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKEH-RHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 395 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~~-r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 395 (583)
...+.|..+.|.|++.|++|.+... ||..++..+..+.+++|+++|++||+.+..+..+.+.|.|++||.+++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 4556788999999999999999865 55556678999999999999999999973445678899999999999987766
Q ss_pred HHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 007952 396 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 475 (583)
Q Consensus 396 ~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~ 475 (583)
++.++...+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++|+++++++||.++++++++.+|+.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCC---------
Q 007952 476 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIV--------- 544 (583)
Q Consensus 476 ~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~--------- 544 (583)
+++++++++++...|++++++.++...+++||+|| +||+||+|++|+||..||||+++.|||.+....+
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 99999999999999999999999999999999998 8999999999999999999999999998732110
Q ss_pred --------------CC--------c-------ccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 545 --------------NG--------M-------RTDSGFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 545 --------------~g--------~-------~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
.| + +..+.|+++++++|+.++|.++.-+++-|.+
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1 1234588999999999999999999998877
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=401.10 Aligned_cols=210 Identities=34% Similarity=0.584 Sum_probs=190.3
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDV 76 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~ 76 (583)
++.++..+|+|||+++++||+++|+||||||||||||||+++. .+++|+|.++|+++. ...|+++|+|+|+.+
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--CCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 3567889999999999999999999999999999999999954 367999999997653 136889999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+||++||.||+..+...- ...++++.++++.++|+.+||.+.+|. ++.+|||||||||+|||||+.+|+++++
T Consensus 88 LFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 88 LFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred ccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 999999999999875421 246788999999999999999998876 5889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+...++++.+++|+++|.|.|++||+... ..+.+|||++|++|+++..|+|++..
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999654 67889999999999999999998863
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=382.52 Aligned_cols=224 Identities=29% Similarity=0.539 Sum_probs=198.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
..+++.+++|+|++|++||+++++|||||||||+||+|+++.. +++|+|++||+++.+ ++|++||||-|+-.+|
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 3567899999999999999999999999999999999998653 679999999999864 5799999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++||.||+.+...+. .+++++.+++++|+++.+||+.. ...++++++|||||+|||.+||||+.+|++|++||
T Consensus 88 Ph~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 88 PHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred CCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 9999999999876653 46889999999999999999741 12345799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 237 (583)
|+++|||.++.++.+.++++.++ |+|||++|||.. |.++++|||.+|++|+++..++|++++. ||
T Consensus 162 PFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il~-------------~P 227 (309)
T COG1125 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEILA-------------NP 227 (309)
T ss_pred CccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHHh-------------Cc
Confidence 99999999999999999999865 999999999965 6789999999999999999999999874 45
Q ss_pred H-HHHHHhhcCC
Q 007952 238 A-EFLLDLANGN 248 (583)
Q Consensus 238 a-d~~~~~~~~~ 248 (583)
| ||+-+....+
T Consensus 228 an~FV~~f~g~~ 239 (309)
T COG1125 228 ANDFVEDFFGES 239 (309)
T ss_pred cHHHHHHHhccc
Confidence 4 5666665443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=406.27 Aligned_cols=210 Identities=35% Similarity=0.601 Sum_probs=189.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++.+|+||||++++||++|++||||||||||+|+|+|... +++|+|.++|.+..+ ..++++||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 5789999999999999999999999999999999999764 579999999988754 46788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+|+|.|.+.++.+. .+..+++++++++.+||.+..++ .+++||+|||||++||+||+++|+++||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 999999999887543 24566789999999999985444 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 163 LDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
|||.++.++.+.|++++++| +||+++||++. ++.++||+|++|++|++++.|+++++...+..
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999999987 89999999975 58889999999999999999999998776554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=393.89 Aligned_cols=205 Identities=29% Similarity=0.474 Sum_probs=187.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
...+|+|||++|++||++||+|.||||||||+|+|+++. .|++|+|.++|+++.. ..|++||+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 357999999999999999999999999999999999854 3679999999987642 3678999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||.||+.|...+. ..++++.++||.++++.+||++..+. ++.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 9999999999997764 36799999999999999999987775 688999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||.+...|+++|+++.++ |.||+++||++ +.+.+.||||.+|++|++++.|+..++.
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999765 99999999996 4688899999999999999999998874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=379.47 Aligned_cols=210 Identities=33% Similarity=0.541 Sum_probs=190.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD 75 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~ 75 (583)
+.+++.|++|+|++|++||+++||||||+|||||||+|.|.+. |++|+|+++|+++.. +.++++|+++|+.
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 5678999999999999999999999999999999999999764 679999999998742 3578899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+|..|||+||+.|..+ ....++++..++.+..-|+.+||... .+ .++.+|||||+||+++|||++.||+++
T Consensus 95 ALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 95 ALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 99999999999999754 33457888889999999999999875 44 368999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||+||||.++..+.++++++.+. |.|++++|||.. +++..||++++|.+|++++.|+++++.+
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999876 999999999965 5889999999999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=389.74 Aligned_cols=210 Identities=32% Similarity=0.480 Sum_probs=184.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~ 79 (583)
++++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++. +++.++++||||.....+
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 467899999999999999999999999999999999999764 67899999999875 356788999999998888
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+|.+.++..-.... ....+++++.+++.++.+|+.+.+++. +.+|||||||||.|||||+++|++|+|||
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----~~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----VDELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----ccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 999999998873221111 112344556799999999999998865 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||.||..++.++++.++++++ +|+|||+++||++. ..++||++++|++|+++..|+|++++
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999995 59999999999875 67999999999999999999998875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=373.75 Aligned_cols=194 Identities=35% Similarity=0.569 Sum_probs=170.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~ 78 (583)
..+|+++|++|++||+++|+|||||||||||++|.|... |++|+|.++|+++.. ..++.||||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 579999999999999999999999999999999999653 489999999987642 1356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++||+||+.+++.+.. .+..+.+++++++++.+||++..+. .++.+|||||||||+|||||+.+|++++.||
T Consensus 96 ~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 96 PDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred CCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 99999999998775542 2233567778999999999976652 2578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||.+||+.++..|++++++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 169 PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999865 99999999997 46789999999999983
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=374.10 Aligned_cols=194 Identities=32% Similarity=0.518 Sum_probs=175.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+...+|+|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|+++ ......++||+|++.++|.+||
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEeccCcccchhhH
Confidence 345789999999999999999999999999999999999664 6799999999988 4456789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++...+. .++++.+++++++|+.+||.+..|. ++++|||||||||+|||||+.+|++|+||||+++|
T Consensus 90 ~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 90 LDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred Hhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 999999876542 4567777899999999999988875 68999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 164 DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+.++.++.+.|.++.+ .++||+++|||..+ ...++|||++|+++
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999875 48999999999764 66799999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=378.60 Aligned_cols=204 Identities=32% Similarity=0.576 Sum_probs=177.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccc-cccEEEEccCC---CCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKIGFVTQDD---VLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~---~~~~~lTv 83 (583)
++|+|||+++++|++++|+||||||||||+|+|.|.+. |.+|+|.++|++..+.. +.+||||||.. .-|| +||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCH
Confidence 69999999999999999999999999999999999764 67899999999876543 57899999964 3466 699
Q ss_pred HHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 84 KETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 84 ~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+|.+..+...+.. ...+ ++.++.++++|+.+|+.+.+|..+| +|||||+|||.|||||+++|++|+|||||+
T Consensus 95 ~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~ 168 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFT 168 (254)
T ss_pred HHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcc
Confidence 9999886432221 1123 3447789999999999999998765 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.| ++++++.|+++++.+
T Consensus 169 gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999976 488999999999 577899999998754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=360.10 Aligned_cols=204 Identities=28% Similarity=0.483 Sum_probs=189.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++++||||+++.||+++|+|||||||||+||+|++.+. |++|+|+++|.+..+ ..|++||.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999775 679999999988753 3688999999888999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|||.|.+++. .+.+.+.+++.+++.+.|+|.++.|+++| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998875 46778889999999999999999998765 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
..+...+.+.+++++++|++||++||.. +++..+||+|++|++|++++.|+++++..
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999995 57888999999999999999999987654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=393.03 Aligned_cols=203 Identities=29% Similarity=0.515 Sum_probs=188.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+|+|+|+++++||+++|+||||||||||||+|+|+.. +++|+|.++|+++++ ..+|.|++|+|+..+||+|||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 9999999999999999999999999999999999653 689999999999875 346889999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.|+.+.+ ..++++.+++|+++.+.|+|++..|++ +++|||||||||+|||||+.+|+++++|||+|+||+.
T Consensus 96 iaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 96 IAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred hhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 99998765 357889999999999999999988864 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
.+..+...|+++.++ |.|+|.+|||.. |+..++|||.+|++|++...|+|.++.+
T Consensus 168 lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 168 LRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999875 899999999965 6789999999999999999999999854
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=396.64 Aligned_cols=223 Identities=28% Similarity=0.480 Sum_probs=197.8
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+.++..+++|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|++++. ..+|.||+|+|+-.+||+
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 3567889999999999999999999999999999999999653 689999999999864 457889999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|||+||+.|+.+++ ....+++.+++|+++++.++|++..+. ++.+|||||||||++||||+.+|++|+||||.
T Consensus 92 ltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 92 MTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 99999999997633 334567788999999999999987765 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad 239 (583)
|+||..-+.++...|+++.++ |.|.|++|||.. |...++|||.+|++|++...|+|+++. ..|...-.||
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY--------~~P~~~fVA~ 235 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY--------ERPATRFVAD 235 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh--------hCcchHHHHH
Confidence 999999999999999999765 999999999965 678999999999999999999999973 3455445577
Q ss_pred HHHH
Q 007952 240 FLLD 243 (583)
Q Consensus 240 ~~~~ 243 (583)
|+-+
T Consensus 236 FiG~ 239 (352)
T COG3842 236 FIGE 239 (352)
T ss_pred HhCc
Confidence 7654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=365.79 Aligned_cols=211 Identities=30% Similarity=0.507 Sum_probs=184.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++++|+|||++|++||+++|+||||||||||||+|+|.. .+++|+|.+||.++.. .+|+++||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 7889999999999999999999999999999999999954 3678999999987642 357889999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 78 FPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+.+||.||+..+..-+.+. .+..++.+.++-+.|+.+|+.+.+.++ ..+|||||+|||+|||+|+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----a~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----ASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----hccCCcchhHHHHHHHHHhcCCC
Confidence 99999999999875433221 122344556788999999999887765 45899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+++.|||+++|||.+++++|+.|+++++ +|.|+|++.||... ..++|||++-|++|+++|.||++++.+.
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 9999999999999999999999999985 59999999999754 6789999999999999999999886543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=374.64 Aligned_cols=209 Identities=29% Similarity=0.522 Sum_probs=188.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCCc--cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK--SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~~--~~~~~i~yv~Q~~~~~~ 79 (583)
+...+++|||++|+.||++|++|||||||||||++|+|+.. +++|.|.+||+ +.++ ...++||||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 45678999999999999999999999999999999999764 67999999999 4443 23578999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|||.||+.|+...+ ....++.+.+.+++++|+.+.|++..+. ++.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998766 2334577888999999999999987764 6899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+++||..-+.++.+.|+++.++ |.|.+++|||+. +++++||+|++|++|+|...|+++|+.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999876 999999999975 6899999999999999999999999843
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=382.12 Aligned_cols=207 Identities=29% Similarity=0.438 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|.++.+ ..++++||++|++.+++.+
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 45789999999999999999999999999999999999653 678999999998753 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+.+..+ ..+..+..++++++++.++|.+..++. +++||||||||++||+||+++|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 96 TVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCc-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 9999999876543 234455567788999999998877765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999888999999999965 5888999999999999999999998764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=343.31 Aligned_cols=201 Identities=30% Similarity=0.476 Sum_probs=181.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+.+.+|+||||++++||++-|+||||||||||||+|.+... ++.|+|.+||+++++ .+|++||+|+||..+
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccc
Confidence 34679999999999999999999999999999999999653 679999999998753 368999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
.++.||+||+.|+.... ..+.++.+++|.++|+.+||.+.++. .+.+|||||||||+||||++.+|++|+.|
T Consensus 91 L~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 91 LPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred cccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeec
Confidence 99999999999987654 35678889999999999999987765 47899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|||-+|||..+.+|++++.++.+.|.||+++|||. .-+.++-.+++.|++|+++....
T Consensus 163 EPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999994 34556668999999999987653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=351.53 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=189.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQD 74 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~ 74 (583)
++++.+|+|||+.|++++++|+|||||||||||||++...... ...+|+|.++|+++.+ ++|+++|+|+|.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 4688999999999999999999999999999999999964321 1367999999998743 478999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.-|| +|++||+.|+.++.. ...++.++.|++.|+...|-+ +.|.+ +....+|||||+||++|||+|+.+|+|
T Consensus 97 PnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeV 170 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEV 170 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcE
Confidence 99999 899999999987643 223677888999999888864 33332 345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQI 233 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~ 233 (583)
|++|||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++|+.+++. ..|.
T Consensus 171 lLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF--------~~P~ 240 (253)
T COG1117 171 LLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIF--------TNPK 240 (253)
T ss_pred EEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhh--------cCcc
Confidence 999999999999999999999999984 789999999964 577999999999999999999999873 3455
Q ss_pred CCChHHHH
Q 007952 234 AMNPAEFL 241 (583)
Q Consensus 234 ~~npad~~ 241 (583)
+.-..||+
T Consensus 241 ~~~TedYi 248 (253)
T COG1117 241 HKRTEDYI 248 (253)
T ss_pred HHHHHHHh
Confidence 55556664
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=382.64 Aligned_cols=204 Identities=25% Similarity=0.431 Sum_probs=182.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..+++|||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 579999999999999999999999999999999999653 678999999998743 13678999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+..... ..++++.++++.++++.+||.+..+. ++.+|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999876432 24566677889999999999887765 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999875 999999999964 577899999999999999999998864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=378.66 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=185.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~ 80 (583)
.+++.+|+|+||++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. ..++.+||++|++.+++.
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 456789999999999999999999999999999999999763 678999999987643 345679999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+.+..+ ..+..+..++++++++.+||.+..++. +++||||||||++||+||+.+|++|+|||||
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999876543 233455566789999999998777664 5699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.+.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999888999999999965 57889999999999999999999987654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=385.52 Aligned_cols=206 Identities=28% Similarity=0.494 Sum_probs=184.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.+ ..++.+|||+|+..+||++|
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 45789999999999999999999999999999999999653 679999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++++|||||||||+|||||+.+|++|+|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 93 VRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999986532 24566667889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999875 999999999965 588999999999999999999999874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=364.01 Aligned_cols=206 Identities=30% Similarity=0.534 Sum_probs=179.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCccc
Confidence 35679999999999999999999999999999999999653 578999999987642 245679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||+||+.+...... ..+.++..+++.++++.+||.+..++ .+.+|||||||||+||++|+.+|++|+||
T Consensus 89 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 89 FDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDL-----YPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred CCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999988643221 23445556778999999999876655 35799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999874 899999999975 57788999999999999999998775
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=382.96 Aligned_cols=207 Identities=28% Similarity=0.498 Sum_probs=185.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 45679999999999999999999999999999999999653 679999999988753 24678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++++|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 93 VADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999986543 24566777889999999999987765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999775 899999999975 6789999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=346.85 Aligned_cols=212 Identities=27% Similarity=0.513 Sum_probs=190.2
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
++.++++++++||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++. ..|..|||+||++.
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 45678999999999999999999999999999999999999764 679999999998864 34567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.|..|||+||+......+.. ...+++.+.+++++|+++++.|+++++ ...||||||||+.|||||+.+|+.++|
T Consensus 90 IFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHHHHHHHHHhcCCCEEEe
Confidence 99999999999987766532 223456667789999999999999875 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||++|.||.+..+|.++++.|+++|..|++|-|+.. |...+|||.+++.+|++..+|+|+++.+
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999999999999999999976 5779999999999999999999998763
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=379.89 Aligned_cols=209 Identities=26% Similarity=0.458 Sum_probs=185.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cc----cccEEEEccC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQD 74 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~----~~~i~yv~Q~ 74 (583)
..+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .. ++.++||+|+
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4567889999999999999999999999999999999999653 679999999998753 22 5789999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.++|++||+||+.|..... ..++++..+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999976542 24566677889999999999876665 46799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+.+.++++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999999764 899999999965 5788999999999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=380.34 Aligned_cols=206 Identities=26% Similarity=0.517 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 95 v~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 95 LGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred HHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 999999986543 24566777889999999999887665 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999765 899999999975 578999999999999999999998874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=378.02 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=184.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||+|++||++||+||||||||||+++|+|.+. +++|+|.++|+++.+ ..++.+||++|++.+++.+
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 45679999999999999999999999999999999999763 679999999998753 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+. .+..+..++++++++.++|.+..++. +++||||||||++||++|+++|++|+|||||+
T Consensus 130 tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 130 TVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 99999997654431 23445566788999999999877765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
|||+.++.++.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+.
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999888999999999965 68899999999999999999999998653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=380.21 Aligned_cols=206 Identities=28% Similarity=0.489 Sum_probs=184.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc--cEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~--G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++ |+|.++|+++.. ..++.+|||+|+..+||.
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 44679999999999999999999999999999999999653 578 999999988743 235779999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.|+...+ ..++++.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++|+|||||
T Consensus 94 ~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 94 LKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999999986543 24566677889999999999987775 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++.++.+.|++++++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999876 799999999965 578999999999999999999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=378.44 Aligned_cols=209 Identities=26% Similarity=0.484 Sum_probs=184.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++||+|++.++|.+|
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 45679999999999999999999999999999999999653 678999999998743 23567999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.|....+.. ...++++.+++++++++.++|++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s 165 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVALARALAVEPQILLLDEPFG 165 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999997643211 123456667789999999999877665 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999876 899999999975 578999999999999999999998874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=349.09 Aligned_cols=203 Identities=30% Similarity=0.493 Sum_probs=177.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC--CCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD--VLFPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~--~~~~~ 80 (583)
++|+|||+++++||.++|+|+||||||||.++|+|... +.+|+|.++|++..+ ..++.+.+|+||+ .+.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999653 579999999987654 3578899999997 58999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||++.|.-+... +..++. ++++.++++.+||.+..- ++++.+||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred hhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 9999999876543 233333 344899999999975322 3468899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||+..+.+|+++|.+++++ |.|.|++|||.. .+..+||||++|++|++++.++.+++.+
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999875 889999999965 5889999999999999999999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=333.38 Aligned_cols=199 Identities=26% Similarity=0.472 Sum_probs=176.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
..++.|+.||++||+||||||||||||+|+|... |.+|+|++||++.+. ...|-+++++|+.++|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999654 679999999998753 467889999999999999999999988
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
+.. |.-.-.++.+++++.++.++||..+.+.+ +.+|||||||||++||+|+.+-+|++||||+|+|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643 22112355667899999999999887764 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 170 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 170 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++..++.+++++ +.|++++||+|+ ++.+++|+++++++|||.+.|+.++.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999864 889999999987 478999999999999999999988764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=355.04 Aligned_cols=206 Identities=30% Similarity=0.514 Sum_probs=184.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~-~~~~~ 80 (583)
+.+|+|+|+++++||.++|+|+||||||||+++|+|.+. +.+|+|.++|.+.. ...++++|||+|++ ..+-.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 689999999999999999999999999999999999764 57899999998864 24688999999997 33445
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
-||.|.+.|+.... ..+.++.+++++++++.+|+.+.++. .+..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 69999999986532 45677889999999999999988765 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||+..+.++++.+++++++ |+|||++|||.. .+..++|++++|++|+++++|+|+++.+.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999987 699999999964 58889999999999999999998877653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=378.10 Aligned_cols=206 Identities=26% Similarity=0.458 Sum_probs=183.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||.+|
T Consensus 25 ~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999653 678999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||+|+.+|++|+|||||+|
T Consensus 103 v~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 103 VFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred HHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 999999986432 23556667789999999999987775 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999875 999999999975 578899999999999999999998874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=352.79 Aligned_cols=204 Identities=29% Similarity=0.488 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccC
Confidence 45679999999999999999999999999999999999653 578999999987642 3456799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+
T Consensus 89 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 89 TGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999875432 123444556789999999998766654 57999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999876 899999999975 5778899999999999999998765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=345.57 Aligned_cols=212 Identities=29% Similarity=0.553 Sum_probs=198.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++.+++|+||++++|++.+++|||||||||.+|+|.|.+. +++|+|.++|.+++...+.+|||+|.+-.++|.+|
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhhhhcccChhhhccCccCc
Confidence 5678999999999999999999999999999999999999764 67999999999999888899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|.|.|.|.+.++ .+++++.+++++.+|+.+++......+ +++||.|++|++.+..+++++|++++||||+||
T Consensus 89 v~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 999999999886 578999999999999999998877654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|||.+.+.+-+.+.+++++|.|||+++|+. +.+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999995 56899999999999999999999999987553
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=356.08 Aligned_cols=208 Identities=30% Similarity=0.493 Sum_probs=178.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 34679999999999999999999999999999999999753 578999999987643 1 2456999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 80 HLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+||+||+.+......... ...++..++++++++.+|+++..++ .+++||||||||++||++|+.+|+
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ 163 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR-----PAGELSYGQQRRLEIARALATDPK 163 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988754321110 0234455678999999999876655 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 164 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 164 LLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999999878999999999975 57788999999999999999998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=368.10 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=181.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+||++|++.+++.+
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 45679999999999999999999999999999999999653 578999999987642 2467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.++|.+..++. +++||||||||++||++|+.+|++|+|||||+
T Consensus 93 tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 93 TVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999998755432 133444556788899999998777664 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++..
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999888999999999975 5778999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=349.58 Aligned_cols=200 Identities=31% Similarity=0.576 Sum_probs=175.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++....++.++|++|++.+++.+||+
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHH
Confidence 35679999999999999999999999999999999999653 6799999999887655567899999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+..+..++++++++.+|+++..++ .+++||||||||++||++|+.+|++++|||||+|||
T Consensus 89 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9998865443 12344556678999999999876665 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999878999999999975 477889999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=376.12 Aligned_cols=207 Identities=26% Similarity=0.473 Sum_probs=184.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT 107 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCC
Confidence 34579999999999999999999999999999999999753 678999999998743 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|.||+.|+...+ ..++.+.+++++++++.++|.+..++ ++++|||||||||+|||||+.+|++|+|||||++
T Consensus 108 v~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 108 VEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999986533 23566677889999999999877665 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++.+
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999876 4899999999965 5789999999999999999999998753
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.96 Aligned_cols=205 Identities=26% Similarity=0.436 Sum_probs=181.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++++|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.+|||+|++.++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 4679999999999999999999999999999999999753 678999999988742 1357799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ ..+.++.+++++++++.+||++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999875433 23455566788999999999876665 457999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999765 899999999975 577899999999999999999988764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=376.24 Aligned_cols=206 Identities=28% Similarity=0.498 Sum_probs=182.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++||+|+..+++.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 45679999999999999999999999999999999999653 578999999988743 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|....+ ..+.++.+++++++++.+||++..++ .+.+|||||||||+|||+|+.+|++|+|||||+|
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~-----~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 92 VAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred HHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999876533 23455666789999999999876665 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999765 899999999975 578899999999999999999998874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=349.61 Aligned_cols=200 Identities=33% Similarity=0.553 Sum_probs=173.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 88 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLT 88 (213)
T ss_pred CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCc
Confidence 34679999999999999999999999999999999999653 678999999987643 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+.+..... ....++.+++++++++.+||.+..++. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 89 VAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 123445556788999999998766653 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999864 899999999975 577899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=355.10 Aligned_cols=208 Identities=26% Similarity=0.478 Sum_probs=178.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 34679999999999999999999999999999999999653 578999999987642 23467999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.+....+.. .....++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999886543211 001233445678899999999876665 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999875 899999999975 47788999999999999999998875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=351.37 Aligned_cols=194 Identities=28% Similarity=0.488 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999653 578999999987632 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ....++.+++++++++.+||++..++ .+.+||||||||++||++|+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999875432 12344556678999999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999877999999999975 57778999999999974
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=353.13 Aligned_cols=205 Identities=28% Similarity=0.523 Sum_probs=178.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 45679999999999999999999999999999999999653 578999999987632 1 2356999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ....++..++++++++.+|+++..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 89 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 89 KLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999998864332 12344455678899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999888999999999975 57889999999999999999998775
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=349.86 Aligned_cols=200 Identities=31% Similarity=0.510 Sum_probs=174.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. .++.++|++|++.+++.+||+||
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHH
Confidence 679999999999999999999999999999999999653 578999999988753 45679999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+....+ ..+.++..++++++++.+||.+..++. +.+||||||||++||++|+.+|++++|||||+|||+.
T Consensus 94 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~ 165 (220)
T cd03293 94 VALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165 (220)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 99875432 123444556789999999998766653 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc--CCeEEEEcChh
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 218 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 218 (583)
++..+.+.|+++++ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 166 ~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 166 TREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999865 4899999999975 4778899999999 79999988754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=352.84 Aligned_cols=203 Identities=29% Similarity=0.469 Sum_probs=178.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~~ 80 (583)
++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999753 678999999987642 125679999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+|++||+.+....+ ..+.++..+.++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||
T Consensus 97 ~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADA-----YPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 99999998865432 12344556678899999999876665 35799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999875 899999999975 577889999999999999999987753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=353.40 Aligned_cols=207 Identities=27% Similarity=0.448 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+ ++.+|+|.++|+++.. ..++.++|++|++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 456799999999999999999999999999999999997511 3678999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++ .+||+||+.+....+. ....++.+++++++++.+|+.+..+.... +.+||||||||++||++|+.+|++|+
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888 7999999988654321 11223345678899999999876554320 47999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||||+|||+.++..+.+.|++++++ +|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999877 99999999975 5778999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=354.47 Aligned_cols=206 Identities=31% Similarity=0.509 Sum_probs=175.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 679999999999999999999999999999999999653 578999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.+...... ......++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 0011123345678889999999876554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999864 899999999975 47779999999999999999998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=362.43 Aligned_cols=217 Identities=30% Similarity=0.447 Sum_probs=184.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.+|||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 369999999999999999999999999999999999653 678999999988631 2467899999986 5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||.||+.|..... ..++++.++++.++++.+||. +..++ .++.||||||||++||++|+.+|++|+
T Consensus 97 l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred ccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 565 69999999875432 235566777899999999996 34443 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH---HHHhcCCCCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 232 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 232 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|++++..+ .++..|..+|
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 246 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVP 246 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCC
Confidence 99999999999999999999999878999999999974 5778999999999999999999988743 3445676665
Q ss_pred CCC
Q 007952 233 IAM 235 (583)
Q Consensus 233 ~~~ 235 (583)
...
T Consensus 247 ~~~ 249 (288)
T PRK13643 247 KAT 249 (288)
T ss_pred hHH
Confidence 443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=365.41 Aligned_cols=206 Identities=26% Similarity=0.476 Sum_probs=183.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 45789999999999999999999999999999999999653 679999999988743 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++||+||+.+|++|+|||||+
T Consensus 91 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999876543 233455566789999999999877764 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|++++..+
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999965 799999999965 5889999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=360.63 Aligned_cols=205 Identities=26% Similarity=0.475 Sum_probs=177.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC-CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-~~~ 79 (583)
+.+|+|||+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..++.+|||+|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 579999999999999999999999999999999999753 679999999988742 34578999999963 333
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
..||+||+.+..... ..++++..++++++++.+||. +..++ .++.||||||||++||+||+.+|++|+||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 245666677899999999996 44454 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++..+
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999875 999999999964 5678899999999999999999988743
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=346.95 Aligned_cols=200 Identities=27% Similarity=0.505 Sum_probs=174.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 34679999999999999999999999999999999999653 578999999988643 23457999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+....+ ....++.+++++++++.+|+.+..++ .++.||||||||++||++|+.+|++++|||||+|
T Consensus 89 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 89 VYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDR-----KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 13345556678899999999876665 3579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999864 899999999975 577889999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=376.87 Aligned_cols=209 Identities=26% Similarity=0.446 Sum_probs=181.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++.+ ..++++|||+|+..+++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCC
Confidence 356789999999999999999999999999999999999763 678999999988643 35678999999999989
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++...+... ....++.+++++++++.+|+.+..++. +++||||||||++|||+|+++|++|+|||
T Consensus 91 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 999999998853211100 011234556789999999998877654 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++.++++.|++++++|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999878999999999975 57789999999999999999999875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=348.61 Aligned_cols=202 Identities=30% Similarity=0.519 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 679999999999999999999999999999999999653 579999999988643 345679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+ ..+.++..++++++++.+||.+..++. +.+||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 99998865433 123444556788999999998766654 5689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999976 699999999976 46788999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=352.74 Aligned_cols=204 Identities=30% Similarity=0.551 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 679999999999999999999999999999999999653 578999999987642 34567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|+||+.+....+ ..+.++..+++.++++.+||.+ ..++ .+++||||||||++||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998865432 1234455667899999999985 4444 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999875 899999999975 477899999999999999999987753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=356.52 Aligned_cols=207 Identities=26% Similarity=0.440 Sum_probs=179.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDD 75 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~ 75 (583)
.+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++.. . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 345679999999999999999999999999999999999653 578999999987642 1 135799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||+||+.+..... .....+..++++++++.+||.+..++. +++||||||||++||++|+.+|++|+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999875432 123444556788999999998766654 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999764 899999999965 577899999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=346.95 Aligned_cols=197 Identities=32% Similarity=0.571 Sum_probs=173.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL--EPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 7999999999999999999999999999999999965 3679999999987643 3457899999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765432 233455567889999999998766653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999878999999999975 577889999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=350.99 Aligned_cols=207 Identities=29% Similarity=0.513 Sum_probs=179.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.++
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 3467999999999999999999999999999999999965 3678999999988642 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+..... ...+.++..+++.++++.+||++..+. .++.||||||||++||++|+.+|++++|||
T Consensus 90 ~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 90 PHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHH-----YPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhc-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999998764211 123344556678999999999876655 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999877999999999975 477889999999999999999988764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=348.08 Aligned_cols=204 Identities=29% Similarity=0.514 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 45679999999999999999999999999999999999753 578999999987642 1 2467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|++||+.+...... ..+..+++.++++.+ ++++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 89 ~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 89 ELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999988654321 123345567788887 57665554 457999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999878899999999975 577899999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=353.98 Aligned_cols=207 Identities=30% Similarity=0.464 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 5679999999999999999999999999999999999653 578999999987642 1356799999999999
Q ss_pred CCCCHHHHHHHHHHcCC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+||+||+.+...... . .....++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999986431100 0 001123345678899999999876654 4579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999764 899999999975 46788999999999999999998764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=352.07 Aligned_cols=207 Identities=31% Similarity=0.525 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------------cccccEEEEc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVT 72 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------------~~~~~i~yv~ 72 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 34679999999999999999999999999999999999653 578999999987631 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
|++.+++.+||+||+.+...... ....++..+++.++++.+||.+..++ .+++||||||||++||++|+.+|+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhCChHHHHHHHHHHHHhcCCC
Confidence 99999999999999987542111 12344556678899999999876554 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999878999999999975 577889999999999999999988763
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=344.30 Aligned_cols=196 Identities=31% Similarity=0.543 Sum_probs=171.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 35689999999999999999999999999999999999653 679999999987643 34567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+....+. . .+++++++++.++|.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 89 v~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 89 ARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999988654321 1 235678899999998766653 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999888999999999975 467789999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=341.94 Aligned_cols=211 Identities=27% Similarity=0.475 Sum_probs=187.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~ 78 (583)
-+.-.+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|++++. ..+..++--+|...+|
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 456789999999999999999999999999999999999764 679999999998863 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 79 PHLTVKETLTYAALLRL--------PNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
++|||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|... .+||+|||||+.|||||++
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhc
Confidence 99999999998865331 111 134566778999999999999998764 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|++|+||||.+||.+....++.+.|++++++ |.||+++.||.. .++++||||++|+.|+++..|+|+++.+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999984 699999999965 5899999999999999999999999864
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=358.04 Aligned_cols=203 Identities=28% Similarity=0.479 Sum_probs=175.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+|||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 569999999999999999999999999999999999753 678999999997631 2356799999986 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++ ..||+||+.|..... ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~lAraL~~~P~lll 168 (290)
T PRK13634 98 LF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVLV 168 (290)
T ss_pred hh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55 469999999875432 234555667899999999996 44554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 lDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999765 999999999965 577899999999999999999988764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=345.87 Aligned_cols=193 Identities=34% Similarity=0.580 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++... .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 679999999999999999999999999999999999653 5789999999876421 245799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ .....+.+++++++++.+||++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhc-----ChhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 9999999999875433 12334455678899999999876654 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9999999999999999999987 58999999999754 54 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=345.26 Aligned_cols=205 Identities=46% Similarity=0.788 Sum_probs=174.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++|+|+|+++++||+++|+||||||||||+|+|+|.... .+.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 47899999999999999999999999999999999997531 1578999999987753 356789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+||+.+......+.....+...+++++ .++.+++++..++ .++.||||||||++||++|+.+|++++|||||+|
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 999998765432222222333344555 8899998776654 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998779999999999755688999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=349.62 Aligned_cols=205 Identities=28% Similarity=0.459 Sum_probs=187.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------c-ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~-~~~~i~yv~Q~~~~~ 78 (583)
..-++|+|++++.||+..|||-||||||||+++|+++. .|+.|+|+++|.++.+ + .++++++|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi--ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI--EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC--CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 34579999999999999999999999999999999854 3679999999998742 2 357899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.||.||..|+...+ ..+++++++++.++|+.+||+...++ ++++|||||||||.+||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999997765 57899999999999999999998876 578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|+|||--+.++.+.|.+|.++ ++||+++|||.. |.+++-|||.+|++|+++..|+|+|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999765 899999999975 5789999999999999999999999873
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=354.06 Aligned_cols=204 Identities=27% Similarity=0.410 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 4579999999999999999999999999999999999653 578999999988742 23567999999963 4456
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.|..... ..++++.+++++++++.+||.+..++ .+.+||||||||++||+||+.+|++|+|||||
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 95 STVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred CcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999864321 23445556678999999999876665 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999877999999999965 46789999999999999999998653
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=369.75 Aligned_cols=206 Identities=25% Similarity=0.450 Sum_probs=180.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~~ 76 (583)
+...+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. . .++.++||+|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 34458999999999999999999999999999999999653 678999999988642 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+||+||+.+....+ ..+.++..++++++++.+||++..++ .+++||||||||++|||+|+.+|++|+|
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 23445566788999999999876665 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999975 4899999999965 577899999999999999999988764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=343.85 Aligned_cols=194 Identities=34% Similarity=0.538 Sum_probs=169.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 4679999999999999999999999999999999999653 578999999987642 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ ....++.+++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999875432 12344455678999999999876554 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 99999999999999999999877999999999975 5778899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=355.02 Aligned_cols=203 Identities=25% Similarity=0.450 Sum_probs=177.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~l 81 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++||+|++ ..++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 469999999999999999999999999999999999753 579999999988743 3456899999997 467778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|..... ..+.++..++++++++.+||++..+. .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKER-----EPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999865322 24556666789999999999876665 457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+++.|++++++ |+|||++||++. ++ ..||++++|++|+++..|++++..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999875 999999999975 45 579999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=362.28 Aligned_cols=207 Identities=25% Similarity=0.443 Sum_probs=179.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
.+.+++|+|++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++.+ ..++.++||+|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3579999999999999999999999999999999999763 578999999998742 2356899999997 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++|.+||.||+.+......+ ..++++.++++.++++.+||. +..+ .++.+|||||||||+||+||+.+|++|+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RYPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999999999886543211 245666777889999999995 3334 4578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999875 999999999965 577889999999999999999998764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=353.77 Aligned_cols=207 Identities=25% Similarity=0.451 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..++.++|++|+..+
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 35679999999999999999999999999999999999653 578999999987642 135679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||.||+.+...... ..+.++.++++.++++.+||.+..++. +..||||||||++||++|+.+|++|+||
T Consensus 96 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred CCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999988643211 123444556788899999998766653 5799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999765 899999999964 577889999999999999999988763
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=349.34 Aligned_cols=207 Identities=28% Similarity=0.562 Sum_probs=179.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 45679999999999999999999999999999999999653 678999999987642 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ...+.++.+++++++++.+|+.+..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 92 RLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998764322 112344556678999999999866554 4579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.+++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999878999999999974 577899999999999999999988753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=357.78 Aligned_cols=204 Identities=25% Similarity=0.471 Sum_probs=175.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-------------------------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------------------------- 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~------------------------- 61 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|++..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 369999999999999999999999999999999999753 57899999986531
Q ss_pred ---ccccccEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChH
Q 007952 62 ---KSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 136 (583)
Q Consensus 62 ---~~~~~~i~yv~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgG 136 (583)
...++.+|||+|++ ..+...||+||+.|+.... ..++++..++++++++.+||. +..++ .+.+||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQR-----SPFELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHH
Confidence 12356799999985 2334579999999875432 245666777899999999996 45554 46799999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++|++++.|+
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~ 248 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGD 248 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999888999999999964 5778999999999999999999
Q ss_pred hhhHH
Q 007952 217 ASEAM 221 (583)
Q Consensus 217 ~~~~~ 221 (583)
++++.
T Consensus 249 ~~~~~ 253 (305)
T PRK13651 249 TYDIL 253 (305)
T ss_pred HHHHh
Confidence 98864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=334.50 Aligned_cols=208 Identities=27% Similarity=0.472 Sum_probs=176.5
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
.++..++|++||+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|++++. ..+..++||||...+
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 3567889999999999999999999999999999999999653 568999999999863 346789999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||.|||+|||..++..+.. ++......+++.+.| .|.+.++++ ..+|||||||-++|||||+.+|++|+|
T Consensus 90 F~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 90 FPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred hhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999988654321 111122266666666 355555554 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||.||-|.-..+|.+.+++++++ |.||+.+.++.. ...+++||.++|.+|++++.|+++++.+
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999976 779999988854 5778999999999999999999998753
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=350.24 Aligned_cols=207 Identities=30% Similarity=0.502 Sum_probs=178.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 34679999999999999999999999999999999999653 578999999987531 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCcccChHHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
++|++|++.+++.+||+||+.++..... ....++.++++.++++.+|+.+.. ++ .+++||||||||++||++
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~lara 166 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARA 166 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHH
Confidence 9999999999999999999987542111 123455567789999999997653 33 467999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999999999999999878999999999975 577789999999999999999988763
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=365.75 Aligned_cols=207 Identities=24% Similarity=0.403 Sum_probs=181.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc----cCCc-------cc-cccEEEE
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK-------SL-KSKIGFV 71 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~----~~~~-------~~-~~~i~yv 71 (583)
.+...+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|+++|+ ++.. .. ++.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 456779999999999999999999999999999999999653 67899999996 3321 12 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 72 ~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||++..++. +.+||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886432 234566677899999999998777654 5789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.++.++.+.|++++++ |+|||++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 999999999965 578999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=342.08 Aligned_cols=194 Identities=35% Similarity=0.542 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 579999999999999999999999999999999999653 578999999987642 24567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|++||+.+....+ ..+.++..++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999875432 12344556678899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999877999999999975 46778999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=345.13 Aligned_cols=206 Identities=33% Similarity=0.547 Sum_probs=177.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY--VAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 3567999999999999999999999999999999999965 3678999999987642 2235799999999988899
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+
T Consensus 90 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 90 SVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred cHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 233444556788999999998766654 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++++.|++++..+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999985 58999999999764 54 599999999999999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=348.23 Aligned_cols=205 Identities=27% Similarity=0.474 Sum_probs=176.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-----ccEEEECCccCCc------cccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPYSK------SLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-----~G~I~~~g~~~~~------~~~~~i~yv~Q 73 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +. +|+|.++|+++.. ..++.++|++|
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 89 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEccccccchHHHHhheEEEec
Confidence 34579999999999999999999999999999999999763 34 8999999987642 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.
T Consensus 90 ~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 90 KPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred CcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHHHHHHHHHHHHHhc
Confidence 999998 999999998754321 123445566788999999997 44443 467999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 162 EPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999987 489999999975 477899999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=341.06 Aligned_cols=191 Identities=30% Similarity=0.508 Sum_probs=165.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCC-CCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDV-LFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~-~~~~lTv~ 84 (583)
+.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|.++.. ..++.++|++|++. .+..+||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 679999999999999999999999999999999999653 679999999988643 34567999999974 34467999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+..... . ...++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998764321 1 112567899999999877665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999999999999878999999999975 477789999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=344.54 Aligned_cols=199 Identities=32% Similarity=0.526 Sum_probs=171.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------c-cccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------L-KSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~-~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++... . ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 579999999999999999999999999999999999653 6799999999886421 1 25699999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+..... ....++.+++++++++.+||++..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 100 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANH-----RPSELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999865432 12344556678999999999876655 357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|++++|++|+++..|+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEecc
Confidence 9999999999999999999976 58999999999754 54 4689999999999988864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=358.41 Aligned_cols=203 Identities=28% Similarity=0.459 Sum_probs=175.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------------------cccc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------------------SLKS 66 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------------------~~~~ 66 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 469999999999999999999999999999999999753 678999999976532 2457
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHH
Q 007952 67 KIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCI 143 (583)
Q Consensus 67 ~i~yv~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~i 143 (583)
.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||. +..++ .+.+||||||||++|
T Consensus 117 ~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvai 187 (320)
T PRK13631 117 RVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAI 187 (320)
T ss_pred cEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHH
Confidence 799999986 4666 49999998865321 234556667889999999996 44443 467999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999878999999999965 467889999999999999999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=347.61 Aligned_cols=213 Identities=25% Similarity=0.403 Sum_probs=177.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc----cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.+ ..++.++|++|++.+
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 3467999999999999999999999999999999999976421 468999999987642 345679999999988
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||+||+.+....+.. ..+.++..++++++++.+||.+..+.. -+..+.+||||||||++||++|+.+|++++||
T Consensus 94 ~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred CCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999986532211 113344556788999999986421111 12356799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 172 EPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999865 899999999975 467889999999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=346.89 Aligned_cols=204 Identities=24% Similarity=0.434 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|+..+++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 3567999999999999999999999999999999999965 3678999999987642 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.+..... ..++..++++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|||
T Consensus 94 ~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 94 RMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred CCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 999999998864221 1223344567778877 47654443 357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999888999999999965 578899999999999999999988764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=354.82 Aligned_cols=204 Identities=23% Similarity=0.432 Sum_probs=176.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 569999999999999999999999999999999999653 678999999988632 2467899999986 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||.||+.+..... ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 565 59999999875322 234556667889999999996 45554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||++++|++|++++.|+++++.+
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999976 4899999999965 5778999999999999999999887643
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=353.92 Aligned_cols=203 Identities=27% Similarity=0.440 Sum_probs=175.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 579999999999999999999999999999999999653 679999999987632 2356799999996 3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++ .+||.||+.+..... ....++..++++++++.+||+ +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 ~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 98 LF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred hc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45 579999998865432 234556667789999999996 45554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999878999999999965 577899999999999999999988764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=340.21 Aligned_cols=198 Identities=30% Similarity=0.577 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++| +++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF 87 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccC
Confidence 3457999999999999 999999999999999999999653 578999999987643 3467799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+
T Consensus 88 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 88 TVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK-----KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999865433 12334445678899999999876665 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999976 599999999975 467889999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=345.10 Aligned_cols=211 Identities=27% Similarity=0.346 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++.. . .+..++|++|++.+++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 3567999999999999999999999999999999999974223678999999987642 1 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|++|++.+....... . ..+.++..+++.++++.+||.+ ..++. +. +||||||||++||++|+.+|++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCHHHHHHHHHHHHHhcCCCE
Confidence 99999999876432211 0 1123344567889999999973 44442 44 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+. ||++++|++|++++.|++++..
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999999999999999999999888999999999975 46666 7999999999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=347.84 Aligned_cols=212 Identities=27% Similarity=0.469 Sum_probs=183.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCC---c----c-ccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS---K----S-LKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~---~----~-~~~~i~yv~Q 73 (583)
+..++++||||++++||++||+|+|||||||+.++|+|.++.+ ..+|+|.++|+++. + . ..+.|+||+|
T Consensus 16 g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ 95 (316)
T COG0444 16 GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ 95 (316)
T ss_pred ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEc
Confidence 3568999999999999999999999999999999999987633 26799999999753 2 1 2367999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 74 DD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 74 ~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
|+ .+.|.+||.+.+.-..... ... .+++..+++.++|+.+||.+-.. +.+.++.+|||||||||.||.||+.+
T Consensus 96 ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 96 DPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred CchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCC
Confidence 96 6899999999887765432 122 46677888999999999986432 33568999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||.||||++||...+.+|+++|+++++ .|.++|++|||+. .+.++||+|.+|..|++|+.|+++++.
T Consensus 172 P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999999999986 5999999999975 588999999999999999999999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=341.15 Aligned_cols=197 Identities=28% Similarity=0.489 Sum_probs=171.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++++|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 3467999999999999999999999999999999999965 3679999999987642 135679999999998
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+|++||+.+....+ ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred cccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999998865432 23344555678899999999876554 45799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++|+++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999877899999999975 477889999999999975
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=347.40 Aligned_cols=207 Identities=30% Similarity=0.479 Sum_probs=178.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 34679999999999999999999999999999999999653 578999999987631 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
++|++|++.+++.+|+.||+.++.... .....++..++++++++.+|+.+..++ .+.+||||||||++||++|
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----MPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----ChhhcCHHHHHHHHHHHHH
Confidence 999999999999999999998853211 112344555678899999999876654 4579999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999875 899999999975 477889999999999999999987763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=347.08 Aligned_cols=202 Identities=32% Similarity=0.500 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..+.++|++|++.+++.+||+
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHH
Confidence 34679999999999999999999999999999999999653 578999999988753 335689999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 89 DNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9998865432 13344556678999999999876654 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc--CCeEEEEcChh
Q 007952 165 STTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 218 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 218 (583)
+.++..+.+.|+++++ +|+|||++||++. ++.+.||++++|+ +|+++..++.+
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999864 5899999999975 5778999999998 59999888754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=339.57 Aligned_cols=197 Identities=34% Similarity=0.581 Sum_probs=170.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 34679999999999999999999999999999999999653 578999999987631 2357799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|++||+.+..... ...+.++..++++++++.+|+.+..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 89 PHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred CCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhh-----CccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998864311 122344555678899999999876655 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999888999999999975 57789999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=344.99 Aligned_cols=205 Identities=31% Similarity=0.500 Sum_probs=176.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----------ccccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----------KSLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----------~~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++. ...++.++|++|+
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE--MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 3567999999999999999999999999999999999965 367899999998752 1235679999999
Q ss_pred CCCCCCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+++.+||.||+.+.. ... ....++..+++.++++.+|+++..++. +++||||||||++||++|+.+|++
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999997532 221 123444556789999999998766653 579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999877999999999975 46678999999999999999988763
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=343.81 Aligned_cols=207 Identities=27% Similarity=0.430 Sum_probs=176.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 34679999999999999999999999999999999999653 578999999987642 12456999999999999
Q ss_pred CCCHHHHHHHHHHcCCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.+....... . ....++.+++++++++.+|+++..++ .++.||||||||++||++|+.+|++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999886432100 0 01223445678999999999876665 35799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999999999999999999999976 789999999965 57789999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=340.66 Aligned_cols=201 Identities=27% Similarity=0.504 Sum_probs=167.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhheEEeccccccccCCCCc
Confidence 34679999999999999999999999999999999999653 57899999998764 3466799999998763 3479
Q ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.+........ ....++..++++++++.+|+++..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----QIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999998754321100 01123345678899999999866655 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999878999999999975 577889999999876 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=357.89 Aligned_cols=210 Identities=26% Similarity=0.456 Sum_probs=179.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC--cccEEEECCccCCc----c---cc-ccEEEEccCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S---LK-SKIGFVTQDD 75 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~--~~G~I~~~g~~~~~----~---~~-~~i~yv~Q~~ 75 (583)
...+|+||||+|++||+++|+|+||||||||+++|+|... +. .+|+|.++|+++.. . .+ +.|+||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 4579999999999999999999999999999999999764 22 48999999998742 1 22 4799999997
Q ss_pred --CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 76 --VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 76 --~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+.|.+|+.+++........ ..++++..+++.++++.+||.+..+. -+.++++||||||||++||+||+.+|++
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 68899999999987654321 23556666788999999999753322 1356889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||||+|||+.++.++++.|++++++ |.|+|++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999875 899999999975 467789999999999999999998875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=345.90 Aligned_cols=213 Identities=25% Similarity=0.414 Sum_probs=176.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCC--c----cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS--K----SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +++|+|.++|+++. + ..++.++|++|++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 3467999999999999999999999999999999999976421 25899999998764 1 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||.||+.+....+. ...+.++..++++++++.+|+.+..... -+..+.+||||||||++||++|+.+|++++
T Consensus 95 ~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRLVIARALAMKPKILL 172 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988654321 0113344556788899999985321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 173 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 173 MDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 699999999975 477889999999999999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=356.38 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCCc----c----ccccEEEEccCC-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK----S----LKSKIGFVTQDD- 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~- 75 (583)
+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +++|+|.++|+++.. . .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 46999999999999999999999999999999999976422 368999999998642 1 124699999997
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 -VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+.|.+||.+++....... .....++.++++.++++.+||.+..+. -+.++++|||||||||+||+||+.+|++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 5899999999887654332 123456667789999999999752211 13467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++|+|++|++|++++.|+++++.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999986 4999999999975 467899999999999999999998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=347.74 Aligned_cols=206 Identities=28% Similarity=0.479 Sum_probs=176.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++|++|++.+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 45679999999999999999999999999999999999653 678999999987642 234679999999988888
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH------hCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII------INPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~------~~p~il 154 (583)
+||+||+.+..... ....++.+++++++++.+||.+..++. +.+||||||||++||++|+ .+|++|
T Consensus 91 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 91 FTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred CCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 99999998864321 112233456688999999998766654 5799999999999999999 599999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999998 67999999999975 477899999999999999999987754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=342.29 Aligned_cols=200 Identities=31% Similarity=0.470 Sum_probs=171.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999753 6799999999887532 2235899999999999999999988
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
......+ ..++++..++++++++.+||++..++. +.+||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445566788999999998766653 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 170 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 170 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999765 899999999975 5778999999999999998886554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=339.46 Aligned_cols=194 Identities=31% Similarity=0.569 Sum_probs=167.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c---cc-ccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S---LK-SKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~---~~-~~i~yv~Q~~~~~ 78 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .+ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 579999999999999999999999999999999999653 579999999987642 1 12 5799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ .....+..+++.++++.+|+.+..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINH-----RPSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999998865432 12334445678899999999876654 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999864 899999999975 35 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=356.50 Aligned_cols=207 Identities=27% Similarity=0.467 Sum_probs=179.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
.+.+|+|||++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++.+ ..++.++||+|++ .
T Consensus 27 ~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 27 LVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred ceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 3579999999999999999999999999999999999753 578999999988642 2456799999997 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+.|.+||.+++....... ....+++.++++.++++.+||.+ ..+ .++++||||||||++||+||+.+|++|+
T Consensus 105 l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 105 LNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD-----RYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred cCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 899999999998765432 12345566778999999999963 334 3578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||+|||..++.++++.|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.+
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999875 999999999965 4677899999999999999999988753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=350.78 Aligned_cols=206 Identities=28% Similarity=0.498 Sum_probs=177.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC------ccccccEEEEccCCC-CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------KSLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~------~~~~~~i~yv~Q~~~-~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ...++.+||++|++. .+
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 4679999999999999999999999999999999999653 67899999998863 124577999999973 23
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||+||+.+..... ..+.++..++++++++.+||.+..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4579999998864322 23455556778999999999876665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++...
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999875 899999999975 4677899999999999999999988654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=348.13 Aligned_cols=206 Identities=22% Similarity=0.430 Sum_probs=176.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCC-
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVL- 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~- 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++..
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 89 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQ 89 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhc
Confidence 45679999999999999999999999999999999999653 679999999988631 235679999999753
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+...|+.||+.+..... ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||
T Consensus 90 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 90 IFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34568999998864332 22344555678899999999876665 35799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999877999999999975 477889999999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=339.35 Aligned_cols=200 Identities=30% Similarity=0.500 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++.++|++|++.+++.+|++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL--RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEeccccccccEEEEcCCCCccccCCHH
Confidence 3467999999999999999999999999999999999965 36789999999876533345799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+. .+ .+++.++++.+|+++..++ .+..||||||||++||++++.+|++++|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654321 11 2457889999999876665 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999877999999999975 4778999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=347.85 Aligned_cols=206 Identities=23% Similarity=0.440 Sum_probs=176.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 4679999999999999999999999999999999999653 678999999987642 1356799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++.+||+||+.+..... .....++..++++++++.+|+. +..+. .+.+||||||||++||++|+.+|++|+
T Consensus 101 ~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 678899999998754321 1123344556789999999996 45554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 99999999999999999999999875 899999999975 467789999999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=337.41 Aligned_cols=193 Identities=32% Similarity=0.555 Sum_probs=166.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 679999999999999999999999999999999999653 578999999987642 23567999999974 36678
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+..... ..+..+.+++++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDR-----SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865322 12344455678899999999866554 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999877999999999975 5777899999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=349.33 Aligned_cols=203 Identities=26% Similarity=0.439 Sum_probs=174.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 469999999999999999999999999999999999653 578999999987642 2356799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 ~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 555 69999998865332 1234455667889999999973 3443 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999877999999999975 577889999999999999999988763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=345.37 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|..... +.+|+|.++|+++.. ..++.++|++|++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 3467999999999999999999999999999999999976421 258999999987631 2466799999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
.+++ +||+||+.+....+. .....+.++++++.++.+++. +..++ .+++||||||||++|||+|+.+|
T Consensus 98 ~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 98 NPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred cccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCC
Confidence 8885 899999998654321 113344456788899998874 22333 46799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|++|+++..|+++++.
T Consensus 170 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 170 NVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999964 799999999975 467889999999999999999988764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.58 Aligned_cols=205 Identities=27% Similarity=0.459 Sum_probs=177.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~ 80 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 3569999999999999999999999999999999999763 578999999998753 2456799999997 36777
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.+..... ..+.++..++++++++.+||++..++. +..||||||||++||++|+.+|++|+|||||
T Consensus 97 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 97 ATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred ccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865432 234555567789999999998776654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||+.++..+++.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++..+
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999876 8999999999754 54 599999999999999999887653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=344.98 Aligned_cols=209 Identities=23% Similarity=0.374 Sum_probs=176.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. . .+..++|++|++.+++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY--KPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc--CCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 3567999999999999999999999999999999999965 3678999999987642 1 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 80 HLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
.+||+||+.++...... ... ...+..++++++++.+||.+..++ .+++||||||||++||++|
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al 168 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR-----QAGNLAYGQQRRLEIARCM 168 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC-----ChhhCCHHHHHHHHHHHHH
Confidence 99999999986431110 000 112334567889999999876665 4579999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999999999999999999875 899999999965 577899999999999999999987753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=339.84 Aligned_cols=198 Identities=30% Similarity=0.483 Sum_probs=166.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--CCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--VLF 78 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~~~ 78 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 7999999999999999999999999999999999965 3678999999987642 2356799999998 567
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.+||+||+.+......+. ..++..++ ++++++.+++. +..++ .+.+||||||||++||++|+.+|++|+|
T Consensus 97 ~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 7899999998865432111 12222222 36889999995 44444 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999876 899999999975 566789999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=349.12 Aligned_cols=205 Identities=30% Similarity=0.518 Sum_probs=177.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++. .+..
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 3569999999999999999999999999999999999653 679999999987642 34567999999973 3345
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.+..... ..+.++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 94 PTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 79999998765321 234555566789999999998766654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999875 899999999975 577899999999999999999998874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=345.06 Aligned_cols=209 Identities=23% Similarity=0.419 Sum_probs=174.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... ++++|+|.++|+++.. ..++.++|++|++
T Consensus 23 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 356799999999999999999999999999999999997542 1368999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+..... ..+.++..++++++++.+|+.+...... +..+..||||||||++||++|+.+|++++
T Consensus 103 ~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lll 177 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIIL 177 (258)
T ss_pred ccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8888 89999999875432 1234445567888999999842211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 178 lDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 178 FDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999965 899999999965 46788999999999999999998876
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=348.82 Aligned_cols=204 Identities=26% Similarity=0.445 Sum_probs=176.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~-~~~ 79 (583)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++. .+.
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 4569999999999999999999999999999999999653 578999999987642 24567999999975 366
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
..|+.||+.+..... ..+.++..++++++++.+||++..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 92 GRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred cchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 689999998865322 23455556778999999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999878999999999976 45 569999999999999999988763
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=346.97 Aligned_cols=209 Identities=27% Similarity=0.467 Sum_probs=177.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|+..+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 45689999999999999999999999999999999999653 578999999987632 235679999999988889
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|+.||+.++...... .....++..++++++++.+||.+..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875211000 011123345568899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 166 ~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 166 TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999877999999999975 578899999999999999999987753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=346.47 Aligned_cols=196 Identities=26% Similarity=0.447 Sum_probs=171.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|.++. ..++.++|++|++.+++.+||+
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHH
Confidence 45679999999999999999999999999999999999653 57899999998753 3467799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+... . ..++++.++++.+||.+..+. .+.+||||||||++||++|+.+|++|+|||||+|||
T Consensus 100 enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 100 DNVGLGLK-------G--QWRDAALQALAAVGLADRANE-----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred HHHHhccc-------c--hHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 99987421 0 123567889999999876654 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 165 STTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+.++..+.+.|+++++ .|+|||++||++. .+.+.||++++|++|++++.|+.+
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999865 4899999999975 467889999999999999988754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=340.59 Aligned_cols=201 Identities=33% Similarity=0.485 Sum_probs=172.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEc-cCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~-Q~~~~~~ 79 (583)
.+.+++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|++... ..++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 456789999999999999999999999999999999999653 578999999986532 3456799998 5567888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+|++.+....+ ....++..++++++++.+|+.+..++. +..||||||||++||++|+.+|++++||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998865432 223445556788899999998777764 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999765 899999999975 577889999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=355.59 Aligned_cols=214 Identities=21% Similarity=0.318 Sum_probs=176.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc----c----ccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK----S----LKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~ 74 (583)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+++|+|.++|+++.. . .++.++||+|+
T Consensus 18 ~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 345799999999999999999999999999999999997642 1468999999987642 1 13579999999
Q ss_pred CC--CCCCCCHHHHHHHHHHcCCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+. +.|.+||.+++........... ....+.++++.++++.+||.+..+ ..+.++.+|||||||||+||+||+.
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHC
Confidence 75 6888999999976432110000 112344567899999999975322 1134578999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|++|++||||+|||+.++.++++.|++++++ |.|||++|||+. .+.++||++++|++|++++.|+++++.
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999875 999999999965 577899999999999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=342.83 Aligned_cols=211 Identities=23% Similarity=0.412 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CCC--cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~~--~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... .++ ++|+|.++|+++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 34679999999999999999999999999999999999521 122 58999999988642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .|++||+.+....+. ....+..+++++++++.+||.+...... +..+..||||||||++||++|+.+|++++
T Consensus 94 ~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14245 94 NPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 599999988654321 1123334567889999999864321111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 170 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 170 MDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999995 4899999999975 477899999999999999999998874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=359.98 Aligned_cols=198 Identities=30% Similarity=0.481 Sum_probs=174.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999653 578999999987632 235679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++.... ...+.+++++++++.+||.+..++ .+.+||||||||++||+||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGR-----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 223445678999999999877665 45799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+++++..
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999876 899999999975 5778999999999999999999988643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=343.45 Aligned_cols=210 Identities=24% Similarity=0.400 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... .+ +++|+|.++|+++.. ..++.++|++|++
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 34679999999999999999999999999999999999642 12 468999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+. ....++.+++++++++.+|+.+...... +..+++||||||||++||++|+.+|++|+
T Consensus 97 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lll 172 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLL 172 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 599999998754321 1123344567888999999864221111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999964 799999999975 47789999999999999999998775
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=390.98 Aligned_cols=208 Identities=22% Similarity=0.411 Sum_probs=185.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+||++|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999763 679999999998753 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+|++.+.++++. .+.++.+++++++++.+||++..++. +++|||||||||+||+||+.+|++++|||||+|
T Consensus 1020 V~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876542 33455567799999999998877654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
||+.++..+.+.|++++ +|+|||++||++. ++..+|||+++|++|+++..|+++++.+.|.
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 99999999999999995 5999999999965 5778999999999999999999999987764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=345.18 Aligned_cols=208 Identities=27% Similarity=0.436 Sum_probs=176.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 45679999999999999999999999999999999999653 578999999987643 235579999999888888
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+||+||+.+....... .....++..+++.++++.+++.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 9999999875211000 001122344578899999999876665 3578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|+++..|++++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999877999999999976 57789999999999999999998775
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=345.87 Aligned_cols=205 Identities=30% Similarity=0.523 Sum_probs=176.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC-CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-~~ 78 (583)
.+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 4579999999999999999999999999999999999653 578999999988631 23567999999963 33
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||.||+.+..... ..+.++..+++.++++.+||.+..++. +++||||||||++||++|+.+|++++|||
T Consensus 92 ~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 92 FAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3479999998764321 234555567788999999998776654 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999877999999999965 577889999999999999999998864
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=347.30 Aligned_cols=204 Identities=28% Similarity=0.486 Sum_probs=176.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 4679999999999999999999999999999999999653 578999999988742 34677999999974 6777
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+..... ..+.++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865322 233445566789999999998766654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|+++..|++++..
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999876 5999999999864 4 479999999999999999987754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=341.50 Aligned_cols=212 Identities=25% Similarity=0.430 Sum_probs=175.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+ ++.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 346799999999999999999999999999999999996532 3578999999988743 34667999999998887
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.||+||+.+....+.. ........++++++++.++|.+...... +..++.||||||||++|||+|+.+|++++||||
T Consensus 93 -~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 169 (246)
T PRK14269 93 -KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEP 169 (246)
T ss_pred -ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6999999886533210 0022344556888999999953211111 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|+++++ |+|||++||++. ++.+.+|++++|++|++++.|++++..
T Consensus 170 ~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 170 TSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999865 899999999965 477899999999999999999988763
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=345.46 Aligned_cols=212 Identities=24% Similarity=0.411 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++.. ..++.++|++|++
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 346799999999999999999999999999999999997642 1478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||.||+.+....+.. ..+.++..++++++++.+|+.+...... +..+++||||||||++||++|+.+|++|+
T Consensus 110 ~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 110 NPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 999999987543211 1123344567889999999964211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 789999999975 577889999999999999999988763
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=347.09 Aligned_cols=209 Identities=23% Similarity=0.412 Sum_probs=176.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 35679999999999999999999999999999999999653 578999999987642 235679999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|++||+.+......+ .....+...++++++++.+||.+..++ .++.||||||||++||+||+.+|++++||||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEP 170 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999875211100 000112344568899999999876555 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999874 899999999975 578999999999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=346.83 Aligned_cols=205 Identities=22% Similarity=0.408 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~-~~~ 79 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.+||++|++. .+.
T Consensus 22 ~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 4679999999999999999999999999999999999753 678999999987742 24678999999974 233
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
..||.|++.|..... ..+..+.+++++++++.+||++..++. +.+||||||||++||++|+.+|++++||||
T Consensus 100 ~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 100 ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 469999998875422 234555667789999999998776654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||+.++..+.+.|++++++ |+|||++||++.. +.. ||++++|++|+++..|+++++..
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999764 9999999999764 544 99999999999999999988753
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=358.74 Aligned_cols=193 Identities=29% Similarity=0.507 Sum_probs=171.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999653 578999999987632 235789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++.. ....++++++++.+||++..++ .+++||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDR-----YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 1234568899999999877665 46799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999876 899999999975 578899999999999999999998874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=344.05 Aligned_cols=203 Identities=24% Similarity=0.422 Sum_probs=175.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. +++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 469999999999999999999999999999999999753 578999999987642 34567999999974 67778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+++|+.+..... ..+.++..++++++++.+|+.+..++ .+++||||||||++||++|+.+|++++|||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864322 23344556678899999999876665 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|||++||++.. +.. ||++++|++|++++.|++++..
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999865 8999999999764 554 9999999999999999988763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.30 Aligned_cols=210 Identities=28% Similarity=0.498 Sum_probs=176.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc---------cccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK---------SLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~---------~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 4578999999999999999999999999999999999975421 236999999987632 224679999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+.+++.+||+||+.+......+. ....++.+++++++++.+|+.+..++ .+.+||||||||++||++|+.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQQQRVAIARALMQ 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHHHHHHHHHHHHhc
Confidence 99999999999998754211000 01123445678999999999876665 356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999864 899999999975 47789999999999999999998763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=346.51 Aligned_cols=208 Identities=25% Similarity=0.412 Sum_probs=175.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|+..+++.
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 3467999999999999999999999999999999999965 3678999999987632 345679999999888899
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+||.||+.+....... .........++++++++.+++++..++. +++||||||||++||++|+.+|++|+||||
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP 174 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875321100 0011223456688999999998766654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 175 t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999865 899999999975 57789999999999999999998765
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=338.81 Aligned_cols=206 Identities=29% Similarity=0.504 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 35679999999999999999999999999999999999653 578999999988753 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.||+.+....+ ..+.....++++++++.+++.+..++. ++.|||||+||++||++|+.+|++++|||||+|
T Consensus 89 ~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 89 VRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred HHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 123344456788999999997766653 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+.++..
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999876 899999999975 577889999999999999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=338.27 Aligned_cols=202 Identities=26% Similarity=0.410 Sum_probs=171.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 35679999999999999999999999999999999999653 678999999987642 12467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|++||+.+....+. .. ..+.++++++.++ +.+..++ .+++||||||||++||++|+.+|++++|||
T Consensus 89 ~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 89 RLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred CCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999988654321 11 1233566777776 4544444 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999875 899999999975 57778999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=322.53 Aligned_cols=208 Identities=29% Similarity=0.492 Sum_probs=179.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
-..|++|+++|++++|||+++|+||||||||||||.|+|.+. +.+|++.+||.+++. ++.+.-+.+||+..+-.
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 356899999999999999999999999999999999999764 578999999998753 34567789999987744
Q ss_pred CCCHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CC
Q 007952 80 HLTVKETLTYAALLRLPNTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NP 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p 151 (583)
..||+|-+.++. .|.... ..+..+.+++.+...++.+.+.. ....|||||||||.+||.|++ ++
T Consensus 89 pFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 89 PFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 469999999874 444322 23556668899999999887764 357999999999999999985 45
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++||||||||.||...+..++++.++++++|..|+++.||.+. ...+||+|++|++||++..|+|++++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 6999999999999999999999999999999999999999876 568999999999999999999998763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=345.55 Aligned_cols=204 Identities=28% Similarity=0.453 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc---cEEEECCccCCc----cccccEEEEccCCC-CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---GSITYNDHPYSK----SLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~---G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+ |+|.++|+++.. ..++.+||++|++. .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh
Confidence 569999999999999999999999999999999999763 344 999999998753 24567999999974 67
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+..||+||+.+..... ..+.++.+++++++++.+||++..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 98 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 98 VGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred ccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7789999998764322 23556666789999999999876665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++++...
T Consensus 170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999865 8999999999764 5 5799999999999999999987643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=342.43 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=175.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 24 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 345799999999999999999999999999999999997531 2 468999999987631 2457799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 104 ~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 179 (260)
T PRK10744 104 TPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLL 179 (260)
T ss_pred ccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 8887 799999988653221 2344555567889999999853111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|+++..|+++++.
T Consensus 180 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 180 LDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999964 789999999975 477889999999999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=341.89 Aligned_cols=211 Identities=26% Similarity=0.450 Sum_probs=175.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 346799999999999999999999999999999999997532 2 258999999987641 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+ ....+++..++++++++.+++.+...... +..+.+||||||||++||++|+.+|++++
T Consensus 103 ~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 103 NPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88885 9999998864332 11133445567888999999854211111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 179 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 179 MDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999975 789999999975 577899999999999999999998864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=340.70 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 346799999999999999999999999999999999997531 2 368999999987632 2466799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .....++.++.+.++++.+||.+...+.. +..+.+||||||||++||++|+.+|++|+
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred ccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88886 99999988643321 11123344566888999999965221111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999864 899999999975 577889999999999999999987763
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=339.30 Aligned_cols=211 Identities=22% Similarity=0.420 Sum_probs=176.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|+..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 46799999999999999999999999999999999997532 2 258999999987632 24677999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+|++||+.+..... ...+.++.+++++++++.+|+.+...... +..+..||||||||++||++|+.+|++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764322 11233444567889999999864211111 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 173 DEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 173 DEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999976 689999999975 577899999999999999999988763
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=335.52 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=172.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCcc-c-cccEEEEccCCC--CCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 81 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~~-~-~~~i~yv~Q~~~--~~~~l 81 (583)
+|+|+|+++++||+++|+||||||||||+|+|+|... + +.+|+|.++|+++... . ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999753 2 1789999999887532 2 357999999984 56778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++|++.+...... ...++..++++++++.+|+.+ ..+ ..+..||||||||++||++|+.+|++|+|||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLK-----KYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987643221 122344567899999999973 333 3467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999874 899999999975 577899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=334.98 Aligned_cols=206 Identities=29% Similarity=0.484 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 35679999999999999999999999999999999999653 578999999987753 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+.+....+. .+.....++++++++.+|+.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 89 ~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 89 VFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999988654331 23444556788999999998766653 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999875 899999999974 477899999999999999999877664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=342.68 Aligned_cols=206 Identities=21% Similarity=0.454 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC--CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV--LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~--~~~ 79 (583)
.+++|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..++.++|++|++. +++
T Consensus 25 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred ccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 3579999999999999999999999999999999999753 678999999987642 22457999999974 678
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||.|++.+...... ....++..++++++++.+||. +..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 103 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 103 RQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred chhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 8899999988654321 123445556788999999994 44443 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999875 899999999975 577889999999999999999887754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=332.32 Aligned_cols=194 Identities=26% Similarity=0.441 Sum_probs=166.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 39999999999999999999999999999999753 678999999987643 23467999999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+....+. . ..++.+++++++++.+||.+..++. +.+||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 93 ~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 93 LGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7543111 1 1223456788999999998766653 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999764 899999999965 477889999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=340.39 Aligned_cols=212 Identities=22% Similarity=0.390 Sum_probs=176.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...++ +++|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 3467999999999999999999999999999999999976421 268999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||+||+.+....+. ..+.++.+++++++++.+|+.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 171 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLL 171 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988754321 1234455567889999999842111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 172 MDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999964 689999999965 5778999999997 79999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=347.09 Aligned_cols=202 Identities=24% Similarity=0.427 Sum_probs=172.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---------ccccccEEEEccCCC--
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---------KSLKSKIGFVTQDDV-- 76 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---------~~~~~~i~yv~Q~~~-- 76 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++. ...++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999653 57899999998753 124567999999973
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||+||+.+..... ....++..++++++++.++|. +..++ .+..||||||||++||+||+.+|++|+
T Consensus 103 ~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 103 LFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred hhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999998865321 123445556788899999994 45554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999764 899999999975 577899999999999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=331.68 Aligned_cols=196 Identities=31% Similarity=0.514 Sum_probs=168.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD 75 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~ 75 (583)
.+++.+ |+|+++++ |+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 344555 99999999 9999999999999999999999753 578999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+|++||+.+..... ..+..+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++
T Consensus 85 ~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998764321 233445678899999999865554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999875 899999999965 477889999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=338.48 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=173.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+ .+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 35679999999999999999999999999999999999643223 58999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +||+||+.+....+. ....+..++++.++++.+++.+..... -+..+++||||||||++||++|+.+|++|+
T Consensus 96 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 96 NPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 799999988654321 112333456678889999875321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 689999999965 577899999999999999999988863
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=334.05 Aligned_cols=195 Identities=33% Similarity=0.515 Sum_probs=168.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------c-cccEEEEccCCCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------L-KSKIGFVTQDDVLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~-~~~i~yv~Q~~~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++++|+|.++|+++... . ++.++|++|++.+++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD--DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 5999999999999999999999999999999999965 35789999999876421 1 257999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||.||+.+....+ ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 102 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 102 TLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDH-----LPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998865432 12344556778999999999876655 3578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
|+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++.
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999765 899999999975 35 56999999999998753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.57 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=179.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+++|+|.++|+++.. ..++.++||+|++.+++
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 4567999999999999999999999999999999999976421378999999988742 12467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+.....+.++..++++++++.+|+.+..++. +.+||||||||++||++|+.+|++|+||||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998864322111123444556789999999998766654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999888999999999965 57788999999999999999998764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=338.28 Aligned_cols=201 Identities=31% Similarity=0.472 Sum_probs=172.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 14 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 34679999999999999999999999999999999999653 578999999987642 34567999999998887
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.||+||+.+....+ . ...+++.++++.+||+ +..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999998753221 1 1234678899999996 34443 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999874 999999999975 477889999999999999999988763
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=335.92 Aligned_cols=200 Identities=26% Similarity=0.457 Sum_probs=172.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 49999999999999999999999999999999653 678999999987643 23467999999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+...... .. .+..+++++++++.+||++..++. ++.||||||||++||++++.+|++++|||||+|||+.++
T Consensus 94 ~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 94 LGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7532110 11 223456789999999998766654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999764 899999999975 577889999999999999999987764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=334.69 Aligned_cols=203 Identities=31% Similarity=0.551 Sum_probs=177.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 38999999999999999999999999999999999653 678999999987643 23567999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+..... ..+..+..+++.++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 91 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 91 NIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 998764322 123445556788999999998766654 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 166 TTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 163 ~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999765 999999999975 477889999999999999999987653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=330.01 Aligned_cols=197 Identities=26% Similarity=0.475 Sum_probs=169.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 5789999999999999999999999999999999653 578999999988643 345779999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+...... ....+.+++++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1122235568889999999876655 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999765 899999999965 4678899999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=341.09 Aligned_cols=211 Identities=24% Similarity=0.399 Sum_probs=176.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.. ..++.++|++|++
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 357899999999999999999999999999999999997642 1478999999988642 2366799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.++.... ....+++.++++.++++.++|.+..+... +..+++||||||||++||++|+.+|++|+
T Consensus 111 ~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lll 186 (267)
T PRK14237 111 NPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILL 186 (267)
T ss_pred cccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 59999998865321 11234455667889999999864322222 24578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 187 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 187 MDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999964 799999999975 577899999999999999999988863
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=342.23 Aligned_cols=203 Identities=25% Similarity=0.427 Sum_probs=175.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 459999999999999999999999999999999999763 678999999988642 34677999999974 57778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||.||+.+..... ..+.++..++++++++.+||.+..++ .+..||||||||++||++|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765321 23445556678999999999876665 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|+++..|++++..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999875 9999999999764 54 69999999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=336.90 Aligned_cols=211 Identities=25% Similarity=0.450 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.+ ..++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 346799999999999999999999999999999999996532 2 258999999987642 2466799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+....+. ..+.++.+++++++++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 94 ~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14240 94 NPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 899999998654321 1123445567888899988753111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 170 MDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999964 899999999964 577889999999999999999988763
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=337.44 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=174.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+ .+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 35679999999999999999999999999999999999764212 47999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+|+.||+.+..... .....++..+++++.++.+++.+..... .+..++.||||||||++||++|+.+|++|+
T Consensus 95 ~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGGQQQRLCIARALAVEPEILL 171 (252)
T ss_pred ccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998765322 1112334456677778877764211111 123467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|++++..
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 172 MDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 799999999975 577889999999999999999988864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=337.47 Aligned_cols=211 Identities=25% Similarity=0.404 Sum_probs=175.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 346799999999999999999999999999999999996532 1 268999999988742 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+...... ....++..++++++++.+|+.+..... -+..+++||||||||++||++|+.+|++++
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 170 (251)
T PRK14270 95 NPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSGGQQQRLCIARTIAVKPDVIL 170 (251)
T ss_pred CcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9887 899999998654321 112344556788899999885311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 171 lDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 171 MDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999976 689999999975 577889999999999999999998863
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=337.34 Aligned_cols=211 Identities=25% Similarity=0.462 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 356799999999999999999999999999999999997532 1 368999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .|++||+.+...... ....+..++.+++.++.+|+.+..+.. .+..+.+||||||||++||++|+.+|++|+
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~lll 169 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVIL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEE
Confidence 9888 899999998654321 112334456678889999986421111 234568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999975 789999999975 477889999999999999999988764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=324.91 Aligned_cols=172 Identities=50% Similarity=0.872 Sum_probs=154.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....++.++|++|++.+++.+||+||
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 67999999999999999999999999999999999965334679999999988754556789999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+.... + +||||||||++||++|+.+|++++|||||+|||+.
T Consensus 100 l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 100 LRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred HHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 9874210 0 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEc
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 215 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 215 (583)
++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999877999999999986446788999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=341.19 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc--------ccEEEECCccCCc----cccccEEEEc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--------GGSITYNDHPYSK----SLKSKIGFVT 72 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~--------~G~I~~~g~~~~~----~~~~~i~yv~ 72 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +. +|+|.++|+++.. ..++.++|++
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~--p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~ 89 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT--GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLP 89 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CcccccccCCceEEEECCEEcccCCHHHHHhhcEEec
Confidence 45679999999999999999999999999999999999763 33 8999999987642 2345689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH---
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--- 148 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--- 148 (583)
|++..++.+||+||+.+....... .....++..++++++++.+|+.+..++ .+..||||||||++||++|+
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~~ 164 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLW 164 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhccc
Confidence 998766678999999875321100 011112344668899999999876554 46799999999999999999
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 149 ------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 149 ------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 165 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 165 PPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred cccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 599999999999999999999999999999876 899999999975 57789999999999999999998776
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=335.01 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=173.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.. ..++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 3567999999999999999999999999999999999965321 358999999987631 34567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++ .||.||+.+..... ...+++..++++.+.++.+++.+...... +..+.+||||||||++||++|+.+|++++|
T Consensus 94 ~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 79999998864321 11123344566788888888754221111 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999976 689999999975 57888999999999999999998775
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.29 Aligned_cols=208 Identities=24% Similarity=0.407 Sum_probs=178.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+||++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. . .++.++|++|++.+++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK10762 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP 92 (501)
T ss_pred CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC
Confidence 45679999999999999999999999999999999999753 578999999987642 1 2457999999999999
Q ss_pred CCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++...+.. ...+.++.+++++++++.+||.+..+.. +.+||||||||++||++|+.+|++|+|||
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999886432111 1123344556788999999998776654 56999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++.
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 168 PTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999888999999999975 57789999999999999999987654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=335.72 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=173.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-----CCc----c----ccccEEEE
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSK----S----LKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-----~~~----~----~~~~i~yv 71 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++ +.. . .++.++|+
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 17 GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 34679999999999999999999999999999999999653 678999999987 532 1 24569999
Q ss_pred ccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHH
Q 007952 72 TQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEII 148 (583)
Q Consensus 72 ~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~ 148 (583)
+|++ .+++.+|++||+.+...... .....+.++++.++++.+++.+ ..++ .+..||||||||++|||+|+
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~laral~ 167 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----LPTTFSGGMQQRLQIARNLV 167 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHHHh
Confidence 9997 46778899999976432111 1122344567889999999963 4443 46799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999998765 899999999965 466789999999999999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=310.27 Aligned_cols=205 Identities=31% Similarity=0.522 Sum_probs=182.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|++|.+||.++++||||||||||||+++|... |..|+|.+||++++-. -..-|.|+|++.++|.+||.||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-CccceeEeccCccchhhHHHHH
Confidence 349999999999999999999999999999999999764 6789999999988532 2335899999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.|+.+++ .++++++.+++.+.+..+||++..++ ++.+||||||||+.|||||..+|++|+||||+++||.-
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 99998876 57889999999999999999987765 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHHH
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMAY 223 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~~ 223 (583)
+++++.++|-++.+ .|+.++++||+..+ ..-+++++++|+. |+++..-+++-...|
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999875 49999999999765 5568999999985 799988887755444
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=326.30 Aligned_cols=190 Identities=28% Similarity=0.507 Sum_probs=164.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---c-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~-----~~~~~i~yv~Q~~~ 76 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++. + ..++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 35679999999999999999999999999999999999653 57899999998742 1 23567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+|++||+.+..... ....++..++++++++.+|+++..++. +.+||||||||++||++|+.+|++|+|
T Consensus 87 ~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999865432 223445566789999999998766654 578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. ..+.||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999999877999999999975 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=339.73 Aligned_cols=210 Identities=22% Similarity=0.392 Sum_probs=172.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.. ..++.++|++|++
T Consensus 24 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999997531 1478999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+.+..+. ... +.+++++++++.+++....+.. -+..+.+||||||||++||++|+.+|++|+
T Consensus 104 ~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~laral~~~p~lll 177 (269)
T PRK14259 104 NPFPK-SIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIARTIAIEPEVIL 177 (269)
T ss_pred ccchh-hHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88884 99999998754321 122 2345677888888874311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-----------CeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----------GSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++ |++++.|+++++..
T Consensus 178 LDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 178 MDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9999999999999999999999964 789999999975 57889999999996 67899999988753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=357.32 Aligned_cols=212 Identities=28% Similarity=0.452 Sum_probs=185.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC--cccEEEECCccCCc--------cccccEEEEccCC-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK--------SLKSKIGFVTQDD- 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~--~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~- 75 (583)
..+++||||++++||++||+|.|||||||+.++|.|.++.+. .+|+|.++|.++.. ...+.|+||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 579999999999999999999999999999999999875432 58999999986531 1346799999996
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 -VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+-|-+||.+.+.-....+. ..++++.++++.++++.+||++.... +.++++|||||||||.||+||+.+|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 57788999998876655443 23478888999999999999976554 5689999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 224 (583)
++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.++||+|++|++|++++.|+++++++.+
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p 246 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSNP 246 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhcc
Confidence 99999999999999999999999985 5999999999975 578999999999999999999999987643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=370.73 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=178.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++||+|++.+++
T Consensus 16 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 45679999999999999999999999999999999999653 578999999987643 12356999999999999
Q ss_pred CCCHHHHHHHHHHcCC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRL-PNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+||+||+.++..... ... .+.++.+++++++++.+||.+..++. +.+|||||||||+||++|+.+|++|+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~lll 168 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSISHKQMLEIAKTLMLDAKVII 168 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999987532100 001 12344556789999999998766654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 169 MDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999888999999999965 57789999999999999999998764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=338.60 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++.. ..++.++|++|++
T Consensus 36 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 3467999999999999999999999999999999999975421 478999999987642 2467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+..... ....+++.+++++++++.+++.+...+.. +..+.+||||||||++||++|+.+|++++
T Consensus 116 ~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 191 (272)
T PRK14236 116 NPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLL 191 (272)
T ss_pred ccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEE
Confidence 98886 9999998865432 11123334566888899999864211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 192 LDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 192 LDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999976 789999999975 477889999999999999999988753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=304.81 Aligned_cols=197 Identities=33% Similarity=0.516 Sum_probs=173.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------c-ccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~-~~~~i~yv~Q~~~ 76 (583)
++..||++|++.+++||-++|+|||||||||||-+++|+.. +++|+|.+.|+++.+ . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45689999999999999999999999999999999999643 679999999998742 1 2467999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.|+||..||+...+.++.. +..+..+.+.+.|+.+||.+..+. ++.+|||||+|||+||||++..|++||.
T Consensus 99 Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEec
Confidence 99999999999998877642 233455668889999999876654 5789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
||||-+||..+..+|.++|-.+.+ .|.|.+++||||. +..-|||.+-|.+|+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 999999999999999999999865 5999999999985 567899999999999874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=337.34 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=172.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +++|+|.++|+++.. ..++.++|++|++
T Consensus 32 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 32 GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 45679999999999999999999999999999999999642 12 478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+...... .......++.+.+.++.+++.+..... -+..+.+||||||||++||++|+.+|++|+
T Consensus 112 ~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~laral~~~p~lll 187 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCIARTLAMKPAVLL 187 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 88885 99999987643221 112233345677888888885311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 188 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 188 LDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999965 689999999975 477899999999999999999988763
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=333.26 Aligned_cols=200 Identities=29% Similarity=0.461 Sum_probs=173.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.+ ..++.++|++|++.+++.+|+
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 3799999999999999999999999999999999965 33 8999999987642 234569999999888888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh-------CCCEEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~-------~p~illL 156 (583)
+||+.+.... ..+.++..++++++++.+||.+..++ .++.||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGR-----SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 12233445678999999999876655 357999999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999878999999999965 47789999999999999999998765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=332.91 Aligned_cols=210 Identities=22% Similarity=0.395 Sum_probs=173.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC----cccEEEECCccCCc------cccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYSK------SLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~----~~G~I~~~g~~~~~------~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +. .+|+|.++|.++.. ..++.++|++|+
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~ 93 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecC
Confidence 34679999999999999999999999999999999999753 22 26999999987632 246779999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+++. |++||+.+....+.. ..+++..+++++.++.+++.+..... .+..+.+||||||||++|||+|+.+|+++
T Consensus 94 ~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 94 PNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred CccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998885 999999987543211 11233445677788888875322111 13457899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999985 5899999999965 577889999999999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=333.57 Aligned_cols=211 Identities=25% Similarity=0.423 Sum_probs=173.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 356799999999999999999999999999999999997632 2 368999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+. ....+..+++++++++.+++....... -+..+.+||||||||++||++|+.+|++++
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~laral~~~p~lll 170 (251)
T PRK14251 95 TPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGGQQQRICIARALAVRPKVVL 170 (251)
T ss_pred ccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8886 799999987643221 112333446678899999985311100 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 171 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 171 LDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred ecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999864 789999999975 477889999999999999999988763
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=323.73 Aligned_cols=180 Identities=40% Similarity=0.709 Sum_probs=155.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc---cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 4678999999999999999999999999999999999975321 578999999988643 346779999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+..... .+ ..+..||||||||++||++|+.+|++++|||||
T Consensus 98 ~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 98 LTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred CcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 99999998753210 12 245689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 147 ~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999875 6777777766555678899999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=335.79 Aligned_cols=201 Identities=32% Similarity=0.552 Sum_probs=162.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++ .
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 3579999999999999999999999999999999999753 578999999987632 24567999999988775 6
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+... ........+ ...+.++.+ ++.+..+ ..+.+|||||||||+||++|+.+|+++
T Consensus 91 tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 91 SIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred hHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999976421 111111111 123344444 3333222 346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+.+.|+++++ |+|||++||++.. + +.||++++|++|++++.|++++..+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999974 8999999999864 5 5699999999999999999887643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=327.83 Aligned_cols=194 Identities=32% Similarity=0.558 Sum_probs=169.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 67999999999999999999999999999999999965 3679999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|+.||+.+...... ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++++||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998754321 134455667789999999998766653 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|+++++ .|+|||++||++. +.+.||++++|++|++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 999999999999999999986 4899999999974 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=336.73 Aligned_cols=211 Identities=24% Similarity=0.404 Sum_probs=176.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..++.++|++|++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 4568999999999999999999999999999999999975421 368999999987642 24677999999998
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++ .|++||+.+..... ...+.++..+++.++++.+++.+..++.. +..+.+||||||||++|||+|+.+|++++|
T Consensus 112 l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 112 PFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred cCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888 79999998764321 11234455556788899999975322211 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999976 589999999965 577899999999999999999988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=334.92 Aligned_cols=211 Identities=22% Similarity=0.423 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-C--cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~--~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+|+||||||||+|+|+|..... + ++|+|.++|+++.. ..++.++|++|++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 3467999999999999999999999999999999999975421 2 48999999987632 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +||+||+.+....+. ..++.+..++++++++.+|+.+..... .+..+..||||||||++||++|+.+|++++
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 98 NPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9888 899999988654321 123344456678889999884311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc-----CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-----~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999875 699999999975 5788999999998 59999999999863
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=332.69 Aligned_cols=211 Identities=28% Similarity=0.425 Sum_probs=173.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 456799999999999999999999999999999999996532 2 148999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .....+.++++.++++.+++.+...+. -+..+++||||||||++||++|+.+|++++
T Consensus 97 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14261 97 NPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIARTLAVNPEVIL 172 (253)
T ss_pred ccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98885 99999998754321 112334456678889988885321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|+++..|++++..
T Consensus 173 LDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 173 MDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999999999999976 689999999965 477889999999999999999988763
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=344.16 Aligned_cols=209 Identities=22% Similarity=0.386 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.++|+++.. ..++.++||||++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 45799999999999999999999999999999999996532 1468999999998752 35678999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .|++||+.|+.... ..+ .+..++.+.++++.++|.+..++.++ +.+..||||||||++|||||+.+|+||+
T Consensus 174 ~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred cCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 886 79999999864321 122 22334557788899888543333333 4578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999876 699999999965 477789999999999999999999975
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=331.81 Aligned_cols=211 Identities=26% Similarity=0.415 Sum_probs=171.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 346799999999999999999999999999999999996531 2 158999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+.+||||||||++||++|+.+|++++
T Consensus 96 ~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 96 NPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 6999999986543211 12223345567788888774211111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|++.+..
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999976 589999999975 577889999999999999999988763
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=338.80 Aligned_cols=210 Identities=24% Similarity=0.400 Sum_probs=172.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++.. ..++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4579999999999999999999999999999999999642 13 378999999987632 24567999999998
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++. ||+||+.+....+. ..+....++++.++++.+|+.+..... -+..+..||||||||++||++|+.+|++|+|
T Consensus 131 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 206 (286)
T PRK14275 131 PFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGGQQQRLCVARTLAVEPEILLL 206 (286)
T ss_pred CCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8885 99999998654321 112333456678889988874211001 1234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 207 DEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 207 DEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999875 689999999975 467889999999999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=334.12 Aligned_cols=209 Identities=21% Similarity=0.340 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|+++.. ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 4568999999999999999999999999999999999976421 268999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++ .+|++||+.+....+. . ..+..++++++++.++|.+..+... +..++.||||||||++|||||+.+|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 5899999998754321 1 2234567889999999865332222 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc--------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++.++.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999999999999999964 799999999975 4778999999996 89999999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=308.61 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=183.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----------------cccc
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----------------KSLK 65 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----------------~~~~ 65 (583)
..+...+|++||++.+.|+++.|+|.|||||||+|+||+-+. .|..|.|.+||+.+. ..+|
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE--~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc--CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 457788999999999999999999999999999999999533 367899999998652 0245
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
.+.|+|+|+.++++.+||.||+.-+..--+ ..++.+..++++..|..+|+.+..+. ++..|||||+||++|||
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHH
Confidence 678999999999999999999975432111 25678888899999999999987774 57899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++|.+-+.|+|+++.
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999999999999999999999999999999999653 56788999999999999999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=335.84 Aligned_cols=206 Identities=26% Similarity=0.466 Sum_probs=175.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 4689999999999999999999999999999999999653 579999999987642 2356799999997 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++..|+.|++.+..... .....++..++++++++.+|+. +..++ .++.||||||||++||++|+.+|++|+
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 677899999997653211 1123445556789999999996 34444 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999875 899999999975 577789999999999999999988754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=357.56 Aligned_cols=203 Identities=33% Similarity=0.535 Sum_probs=174.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
++++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||.+..+ .++++++||+|++.+|+
T Consensus 331 ~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred CCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 344589999999999999999999999999999999999764 579999999988753 47899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
. |++||+.++. + ..++ +.+.+++++.||.+ -.|+.+| +..++|||||+|||++||||+.++++
T Consensus 409 g-TireNi~l~~----~-~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 409 G-TIRENILLAR----P-DASD----EEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred c-cHHHHhhccC----C-cCCH----HHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 7 9999998852 1 1233 34556666666654 3456666 35688999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+++||||++||.++...|++.|.++++ ++|++++||++.. ..-+|+|++|++|+++..|.++++.+
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999999999987 5999999999753 56799999999999999999999853
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=377.12 Aligned_cols=201 Identities=27% Similarity=0.443 Sum_probs=170.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++|+|+|+++++||.+||+||||||||||+++|+|.. | .+|+|.+||+++.+ .+|+.|+||+|++.+|+.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence 4578999999999999999999999999999999999964 3 58999999998753 468899999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.++. | +.++++ ++++++..++ ++-.||.+|.. ...||||||||++|||||+++|++
T Consensus 438 -TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 438 -TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred -CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998852 2 234433 3333443333 34457888753 578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 99999999999999999999999985 4899999999984 357799999999999999999998864
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=330.55 Aligned_cols=210 Identities=25% Similarity=0.346 Sum_probs=172.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccc-cEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS-KIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~-~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|.++.+ ..++ .++|++|++.+++
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 3467999999999999999999999999999999999963224678999999987643 1222 4889999999999
Q ss_pred CCCHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|+.|++.+....... ......+..+++.++++.+|+. +..++. +. +||||||||++||++|+.+|++
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999875432110 0112223446678899999997 344443 34 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~ 220 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++.. +... +|++++|++|++++.|+++.+
T Consensus 173 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 173 AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999998779999999999753 5455 899999999999999998844
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=335.26 Aligned_cols=210 Identities=24% Similarity=0.438 Sum_probs=171.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 346799999999999999999999999999999999997531 2 478999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.++...+. ..+.+..++.+.+.++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 115 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lll 190 (271)
T PRK14238 115 NPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVIL 190 (271)
T ss_pred ccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88874 99999998653321 1122233455677787776532111111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 191 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 191 MDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999976 799999999965 47789999999999999999998876
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=366.37 Aligned_cols=205 Identities=31% Similarity=0.563 Sum_probs=176.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
..+.+||||+||+++|||++||+||||+||||+.++|-.. ++ |.+|+|.+||+|+.+ .+|++||+|.|||.+|.
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-Y~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-YD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-cC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 3467899999999999999999999999999999999964 33 679999999999863 46899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
. ||+|||.|+.. +.+.++..+. +++.+. ++++-.||.+|. +..+||||||||++|||||++||.||
T Consensus 556 ~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VL 626 (716)
T KOG0058|consen 556 G-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVL 626 (716)
T ss_pred c-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEE
Confidence 6 99999999753 3344444332 334444 467778999984 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||.||+||+++...+.+.|.++.+ ++|||++.|..+. .+.+|+|+++++|++++.|+.+|+++
T Consensus 627 ILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999875 6999999999764 57899999999999999999999864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=365.53 Aligned_cols=201 Identities=24% Similarity=0.451 Sum_probs=176.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +.+|+|.++|+++.. . .++.+||++|++.+++
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 45679999999999999999999999999999999999753 678999999987642 1 2346999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+... ...+.+++++++++.+||.+..++. +.+|||||||||+||++|+.+|++|+||||
T Consensus 100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 100 NLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred CCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999987531 1123456788999999998766654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999888999999999965 47789999999999999999998765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=363.94 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=177.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 45679999999999999999999999999999999999653 578999999987642 23567999999998999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+..........+.++..++++++++.+|+.+..++. +.+|||||||||+||++|+.+|++|+||||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999998753211010113344456789999999998766653 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999888999999999975 57789999999999999999997664
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=331.98 Aligned_cols=210 Identities=23% Similarity=0.418 Sum_probs=175.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC----cccEEEECCccCCc------cccccEEEEccCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~----~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.. ..++.++|++|+.
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 4579999999999999999999999999999999999764 21 37999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..||||||||++||++|+.+|++++
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vll 173 (261)
T PRK14258 98 NLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLL 173 (261)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 899999988643221 1133344567888999999854222111 34567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC-----CeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+.||++++|++ |++++.|+++++.
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999999999999999999999875 4899999999975 58889999999999 9999999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=377.76 Aligned_cols=203 Identities=33% Similarity=0.541 Sum_probs=172.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
..+|+|+|++|++||.+||+|+||||||||+|+|+|+.. |.+|+|.+||.++.+ .+|+++|||+||+.+|.. |
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-S 562 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-S 562 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-c
Confidence 479999999999999999999999999999999999764 678999999998753 578999999999999976 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++||+.++. |. .+.++..+. +++.++. +..-.+|.+| +...+||||||||++|||+|+++|+||+||
T Consensus 563 I~eNi~l~~----p~-~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 563 IRENIALGN----PE-ATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHhcCC----CC-CCHHHHHHHHHHhCcHHHHHh--cccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 999998752 22 233332221 2333333 4455678776 456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
||||+||+.+...|.+.|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.+|+++.
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999864 799999999976 4688999999999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=363.53 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=177.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 4567999999999999999999999999999999999965321368999999987643 12457999999999999
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.+........ ....++..++++++++.+||.+..+. ..+.+|||||||||+||++|+.+|++|+|||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 999999998864322111 12334455678999999999765421 2357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999888999999999965 5778999999999999999998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=330.55 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=171.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCCc-c-ccccEEEEccCCC--CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK-S-LKSKIGFVTQDDV--LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~~-~-~~~~i~yv~Q~~~--~~~ 79 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +++|+|.++|+++.. . .++.++||+|++. +.+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 357999999999999999999999999999999999976410 178999999988743 1 2357999999974 456
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.+|+.+++.+.+.... ... ..+++.++++.++|.+. .++ .+.+||||||||++||++|+.+|++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlL 164 (254)
T PRK10418 95 LHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIA 164 (254)
T ss_pred cccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6899999876543211 112 23568899999999762 233 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999764 899999999975 467889999999999999999988764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=314.87 Aligned_cols=209 Identities=27% Similarity=0.475 Sum_probs=186.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~ 78 (583)
+.+++.+|+|+|.++++|.+++++|||||||||||.+++.++ +.++|+|+++|.++. +++.++++.+-|+..+-
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~--~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL--KKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc--cccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 457889999999999999999999999999999999999754 367999999999875 35678899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 79 PHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
..+||+|-+.|+ |.|. ....++.+..+++.++.++|++..|.. ..+||||||||..||+.++++.+.++|
T Consensus 88 ~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 88 SRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred heeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhhhhheeeeccCcEEEe
Confidence 999999999997 3342 234567778899999999999988864 569999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||.++||...+.++|+.|++++++ |+||+++.||.+. ...++|+|+-|++|+++..|+++++.+
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999976 9999999999875 456899999999999999999999753
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=328.42 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=172.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 12 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 3567999999999999999999999999999999999974223578999999987642 1 2356999999999898
Q ss_pred CCCHHHHHHHHHH-cCC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccC-cccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV-RGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~-~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|+.+++.+... .+. . ......+..+++++.++.+++. +..++. + ++||||||||++||++|+.+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~i 166 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGFSGGEKKRNDILQMAVLEPEL 166 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC-----CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 8888777654321 110 0 0112223456778899999995 333332 3 37999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIG 228 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g 228 (583)
|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+ +.++..+
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~ 240 (248)
T PRK09580 167 CILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQG 240 (248)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcC
Confidence 9999999999999999999999999887899999999965 35555 899999999999999998855 3444433
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=332.21 Aligned_cols=200 Identities=33% Similarity=0.514 Sum_probs=164.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 379999999999999999999999999999999999753 679999999987642 24567999999998887 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.+.... ...++..+ .+++.++.+ ++.+..+ ..+..||||||||++||++|+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 11211111 234555555 5544333 3467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|+++..|++++..+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999964 8999999999754 54 499999999999999999887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=335.91 Aligned_cols=209 Identities=25% Similarity=0.441 Sum_probs=172.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|.++.. ..++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 346799999999999999999999999999999999997542 1478999999987631 3467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .+. +..++++++++.+|+.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 130 ~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLL 203 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVIL 203 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 99999988654321 122 34567889999999853111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE-EEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||+++ +|++|+++..|++++..
T Consensus 204 LDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 204 MDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999976 489999999965 5778899975 67999999999987753
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=318.60 Aligned_cols=173 Identities=55% Similarity=0.958 Sum_probs=154.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..++.++|++|++.+++.+|++
T Consensus 21 ~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred cccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 367999999999999999999999999999999999965113678999999998754 3467799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+.... ..||||||||++||++|+.+|++++|||||+|||
T Consensus 101 ~~i~~~~~~-------------------------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD 143 (194)
T cd03213 101 ETLMFAAKL-------------------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143 (194)
T ss_pred HHHHHHHHh-------------------------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 999764210 0599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 144 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999998779999999999865677889999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=329.76 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-----CCc--------cccccEEEE
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSK--------SLKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-----~~~--------~~~~~i~yv 71 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++ +.. ..++.++|+
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 34679999999999999999999999999999999999653 578999999976 431 123569999
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHH
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEII 148 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~ 148 (583)
+|++. +.+.+|+.||+.+..... . .....+..++++++++.+|+.+ ..++ .++.||||||||++||++|+
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----LPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----CchhcCHHHHHHHHHHHHHh
Confidence 99974 456789999997643211 1 0112234567889999999963 4444 46799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++|++++.|++++..
T Consensus 165 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999998764 899999999965 577789999999999999999987764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=329.67 Aligned_cols=211 Identities=23% Similarity=0.408 Sum_probs=175.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.+||.++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 356799999999999999999999999999999999996431 2 378999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+..... ...+.+..++++.+.++.+|+.+...... +..+..||||||||++||++|+.+|++|+
T Consensus 94 ~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 94 NPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 9999998764322 11233445567888999999854321111 34567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|++++.|++++..
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999964 899999999975 578899999999999999999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=369.76 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=177.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--VL 77 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~~ 77 (583)
+.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..+++++||+|++ .+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 579999999999999999999999999999999999763 578999999987642 1356799999997 58
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++.+||.|++.+..... ....+++..+++.++++.+||. +..++ ++++|||||||||+||++|+.+|++|||
T Consensus 415 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWR-----YPHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999998865432 1113445567789999999996 44444 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999875 899999999975 577899999999999999999998874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=332.71 Aligned_cols=201 Identities=31% Similarity=0.496 Sum_probs=161.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY--DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC--CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 56999999999999999999999999999999999965 3679999999987642 23567999999998876 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.+.... ...++..+ .+.+.++.+ ++....+ ..+++||||||||++||++|+.+|++++
T Consensus 93 v~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874221 11111111 112223333 3332222 3467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +.||++++|++|++++.|+.++..+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999997 79999999999753 5 47999999999999999998776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=333.25 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++.. ..++.++|++|+.
T Consensus 31 ~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 3457999999999999999999999999999999999975321 258999999987631 2457899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||.||+.+....+. .. ...++.+++.++.+++.+..... -+..+..||||||||++||++|+.+|++|+
T Consensus 111 ~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lll 184 (274)
T PRK14265 111 NPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAMKPDVLL 184 (274)
T ss_pred ccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 88875 99999988643221 11 12234567778888874221111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc---------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG---------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+ +|++++.|+++++.
T Consensus 185 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 185 MDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999975 789999999975 5778999999997 79999999998874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=351.85 Aligned_cols=208 Identities=28% Similarity=0.467 Sum_probs=181.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC--C----ccccccEEEEccCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S----KSLKSKIGFVTQDD--V 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~--~----~~~~~~i~yv~Q~~--~ 76 (583)
+...+++||||++++||++||+|+||||||||.|+|+|+.. |.+|+|.++|.+. + +..++++-+|+||+ .
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 34678999999999999999999999999999999999764 5799999999873 1 13456788888886 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.|.+||++++.-......+ ...++.++++.++++.+||... ..++++++||||||||++|||||+.+|++|++
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 89999999999887654332 2356777889999999999842 33567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||.||+..+.+++++|+++.++ |.|.|++|||.. .+.++||||.+|++|++|+.|+.+++.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999876 999999999965 588899999999999999999888774
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=316.80 Aligned_cols=178 Identities=31% Similarity=0.562 Sum_probs=152.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC--
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-- 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-- 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 45789999999999999999999999999999999999653 578999999987631 23567999999973
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRER-----PTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 479999999865422 23344555678899999999876665 4579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999999888999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=334.02 Aligned_cols=206 Identities=24% Similarity=0.410 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccc-cccEEEEccCCCCC--CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKIGFVTQDDVLF--PHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~~~~--~~lT 82 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.... ++.++|++|++.+. ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 4679999999999999999999999999999999999653 57899999998865433 34699999997652 2347
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
++|++.++...... ........+++++++++.+||.+..++. +..||||||||++||++|+.+|++++|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89988654211000 0012233445678899999998776654 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||+++++ +|++++.|+++++
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999878999999999975 577899999887 8999999998875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=332.20 Aligned_cols=209 Identities=22% Similarity=0.392 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCC------ccccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS------KSLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~------~~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.... + +++|+|.++|+++. ...++.++|++|++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 346799999999999999999999999999999999996532 1 36899999998763 12456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+ ... .+..++++++++.+++.+..+.. -+..+.+||||||||++||++|+.+|++|+
T Consensus 101 ~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~laral~~~p~lll 174 (264)
T PRK14243 101 NPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174 (264)
T ss_pred cccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 49999998865322 111 23345567778888874321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc---------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG---------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|+++++.
T Consensus 175 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 175 MDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999976 589999999965 5789999999998 79999999998874
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=327.90 Aligned_cols=211 Identities=27% Similarity=0.468 Sum_probs=172.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE------ECCccCCc----cccccEEEEcc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT------YNDHPYSK----SLKSKIGFVTQ 73 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~------~~g~~~~~----~~~~~i~yv~Q 73 (583)
.+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|. ++|+++.+ ..++.++|++|
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 356789999999999999999999999999999999999653 4555554 44555421 24677999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.+++.+||+||+.+..... ....+++..+++.++++.+++.+...... +..++.||||||||++||++|+.+|++
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999875322 11234455567889999999964211111 235679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999965 699999999965 567899999999999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=361.43 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=175.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVP 92 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccC
Confidence 45679999999999999999999999999999999999653 578999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+.............+.+++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 99999999885321111112344555678999999999865554 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 168 TSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999888999999999975 57788999999999999877653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=396.46 Aligned_cols=208 Identities=27% Similarity=0.411 Sum_probs=187.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+.+|+|+|++|++||++||+||||||||||+|+|+|... +++|+|.++|+++.+ ..++.+||+||++.+++.+||
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 679999999999999999999999999999999999763 678999999988742 245679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|++.+.+.++. .+.++.+++++++++.+||.+..|++ +++||||||||++||+||+.+|++++|||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998776542 34455567789999999999887765 5699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|+.+++.+.+.|++++++|+|||++||++. ++.++|||+++|++|+++..|+++++.+.|.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999999999888999999999964 6889999999999999999999999988775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=362.79 Aligned_cols=206 Identities=30% Similarity=0.503 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|.. + .+|+|+++|+++.. ..++.++||+|++ .
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 467999999999999999999999999999999999965 3 58999999987642 1246799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++.+||+||+.+....+.. ..+..+.+++++++++.+||+ +..++ .+.+|||||||||+||++|+.+|++|+
T Consensus 375 l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred cCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 78889999999886533211 123444556789999999997 34554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++.
T Consensus 449 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 449 LDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999875 899999999965 477899999999999999999988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=361.05 Aligned_cols=211 Identities=29% Similarity=0.444 Sum_probs=177.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-----------------------CccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----------------------DHPYS 61 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-----------------------g~~~~ 61 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++++|+|.++ |.++.
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 90 (520)
T TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLE 90 (520)
T ss_pred CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999999999999964213578999997 22210
Q ss_pred --------------ccccccEEEEccC-CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 007952 62 --------------KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126 (583)
Q Consensus 62 --------------~~~~~~i~yv~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 126 (583)
...++.++|++|+ +.+++.+||+||+.+..... ..+.++.++++.++++.+||++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~--- 164 (520)
T TIGR03269 91 PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITH--- 164 (520)
T ss_pred ccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhc---
Confidence 0134679999997 67888999999999865432 23445556789999999999876654
Q ss_pred CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEE
Q 007952 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 127 ~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||++. .+.+.||++++
T Consensus 165 --~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~ 241 (520)
T TIGR03269 165 --IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIW 241 (520)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 4679999999999999999999999999999999999999999999999976 4899999999975 46789999999
Q ss_pred EcCCeEEEEcChhhHHHHH
Q 007952 206 LGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 206 L~~G~iv~~G~~~~~~~~f 224 (583)
|++|++++.|++++..+.+
T Consensus 242 l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 242 LENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCEEeeecCHHHHHHHH
Confidence 9999999999998876654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=328.62 Aligned_cols=201 Identities=33% Similarity=0.507 Sum_probs=162.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 569999999999999999999999999999999999753 678999999987642 346679999999988876 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|+||+.+... . ... +++++.++.+++.+..+.. ..+..+++||||||||++||++|+.+|++++|
T Consensus 93 v~~~~~~~~~----~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRP----N-ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCC----C-CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986421 1 111 2233344444443222111 01234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+.++..+
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999996 58999999999754 5 4699999999999999998876543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=321.32 Aligned_cols=192 Identities=26% Similarity=0.373 Sum_probs=162.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++... ..+...+.+.+||+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~ 102 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL--------LGLGGGFNPELTGR 102 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh--------hcccccCCCCCcHH
Confidence 56789999999999999999999999999999999999653 678999999986421 11223456779999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+|||
T Consensus 103 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9998875432 123445556788899999998776654 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999877899999999965 467889999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=376.68 Aligned_cols=198 Identities=31% Similarity=0.489 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||+++.+ .+|+.+|||+||+.+|+.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 4679999999999999999999999999999999999653 679999999998753 468899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | .+. +++.++++..|+.+ -.||.+|+ ...+||||||||++|||||+++|++|
T Consensus 542 TI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 542 SIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred cHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 232 33555666666543 34677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++.++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|++++.|+++++++
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999886 589999999974 357799999999999999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=325.01 Aligned_cols=194 Identities=30% Similarity=0.538 Sum_probs=161.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 56999999999999999999999999999999999965 3578999999987632 23567999999998887 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|.||+.+... ... .+++.++++.+++.+..+.... ...+.+||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 2345677888888765554321 123568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||||+|||+.++..+.+.|++++++ +|||++||++. .+ +.||++++|++|++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999764 89999999975 34 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=370.58 Aligned_cols=202 Identities=28% Similarity=0.453 Sum_probs=171.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||.++++ .+++.++||+||+.+|+.
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 431 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-
Confidence 4679999999999999999999999999999999999653 578999999998753 467889999999999985
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. ++..+. ++++++++..|+ ++-.||.+|.. ...||||||||++|||+|+++|++|
T Consensus 432 Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 432 TIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred hHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 212233 334455555553 34457878753 5789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999985 4799999999974 467899999999999999999998754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=347.42 Aligned_cols=200 Identities=34% Similarity=0.589 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+++||+++||+|++||-+||+|+|||||||++|+|.+.. ..+|+|.+||+++.+ .+|+.|||||||..+|.+
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~---d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd- 439 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF---DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND- 439 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh---ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-
Confidence 445999999999999999999999999999999999754 368999999998753 578899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||.+|+.|+.. ..+.+ +|.+..+..|+ ++-..|.+|+ ....|||||||||++|||++.||+|+
T Consensus 440 TIl~NI~YGn~-----sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 440 TILYNIKYGNP-----SASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred hHHHHhhcCCC-----CcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeE
Confidence 99999998731 22333 34455555555 3445566764 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++|||||.||..+..++++.+.+. ..++|+|++.|+.+ ...-||+|++|++|++...|+.++++.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999993 45999999999964 467899999999999999999999976
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=335.30 Aligned_cols=213 Identities=24% Similarity=0.444 Sum_probs=173.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++.+ ..++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999997532 1478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC---------CCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 76 VLFPHLTVKETLTYAALLRLPN---------TLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
.+++ .||+||+.+........ ... .+...+++.++++.+++.+...... +..+++||||||||++||+
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIAR 213 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHH
Confidence 8887 49999999865321100 011 2233566888999998853222221 3456899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE-EEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-ILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 221 (583)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++ ++|++|++++.|++++..
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999977 589999999975 467889996 578999999999988763
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.76 Aligned_cols=198 Identities=24% Similarity=0.409 Sum_probs=164.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~ 95 (225)
T PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD 95 (225)
T ss_pred CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc
Confidence 4567999999999999999999999999999999999965 3679999999987642 245679999999988874
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
||+||+.+....+. .. ..+++++++++.+|+. +..++ .++.||||||||++||++|+.+|++++||||
T Consensus 96 -tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 96 -TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred -cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987643321 11 1234578899999995 34443 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc-CCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~ 217 (583)
|+|||+.++..+.+.|++++++ |.|||++||++.. + +.||++++|+ ++..+..|..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999764 8999999999754 5 4699999995 5555565653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=359.54 Aligned_cols=208 Identities=22% Similarity=0.403 Sum_probs=175.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~ 77 (583)
++.+|+|+||++++||+++|+||||||||||+|+|+|... ++.+|+|.++|+++.. ..++.++|++|++ .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-GRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 4579999999999999999999999999999999999653 2478999999987642 2345699999995 47
Q ss_pred CCCCCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 78 FPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
++.+||.||+.+........ ..+.++.+++++++++.+++. +..++ .++.|||||||||+||++|+.+|++|
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPEL-----AIARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccc-----ccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 88999999998753211110 012334456789999999996 45554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999888999999999975 57889999999999999999987664
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=320.87 Aligned_cols=197 Identities=28% Similarity=0.434 Sum_probs=164.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCCHHHHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAAL 92 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lTv~e~l~~~~~ 92 (583)
+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++.+ .++.++|++|++.++ ..+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4789999999999999999999999999653 578999999987643 456799999998764 34799999987532
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 93 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 93 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
.... ......+.++++.++++.+|+++..++. +.+||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688999999998766653 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 172 ~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|++++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999878999999999965 577899999999 89999999988753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=359.11 Aligned_cols=207 Identities=24% Similarity=0.440 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-------ccc-ccEEEEccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-------SLK-SKIGFVTQDD 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-------~~~-~~i~yv~Q~~ 75 (583)
+.+|+|+||++++||+++|+||||||||||+|+|+|.+++. +++|+|.++|+++.. ..+ +.+|||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 57999999999999999999999999999999999976421 268999999988642 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 76 V--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 76 ~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
. +++.+|++|++.+..... ...+..+..++++++++.+||.+. .++ .+.+|||||||||+||++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~~LSgGe~qrv~iAraL~~~ 174 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTD-----YPHQLSGGERQRVMIAMALLTR 174 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhh-----CCcccCHHHHHHHHHHHHHhcC
Confidence 4 677889999987654321 123455566789999999999752 243 4679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 175 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 899999999975 467899999999999999999988764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=366.07 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=175.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-------------Cc----cc-ccc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-------------SK----SL-KSK 67 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-------------~~----~~-~~~ 67 (583)
.+++|+|+||++++||++||+||||||||||+|+|+|.+. +.+|+|.++|..+ .. .. ++.
T Consensus 28 ~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 28 KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 3579999999999999999999999999999999999763 5689999988632 10 12 246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 68 IGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 68 i~yv~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+|||+|++ .+++.+||+||+.+...... ..+..+.++++.++++.+||.+..+ .-+.++.+|||||||||+||+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--ILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCccCCHHHHHHHHHHH
Confidence 99999997 68899999999998765321 2345566678999999999964210 112357899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++. .+.++||+|++|++|++++.|+++++.
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 999999999999999999999999999999999865 999999999965 577899999999999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=316.34 Aligned_cols=188 Identities=25% Similarity=0.438 Sum_probs=160.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 34679999999999999999999999999999999999653 678999999987642 3466799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.||+.+....+. . +.+++++++++.+||.+..++ .+..||||||||++||++|+++|++++|||||+
T Consensus 90 tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 90 TALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDV-----PVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred cHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999988654321 1 234568899999999876655 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|||+.++..+.+.|++++++|+|||++||++.. +.+..++++.+
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999998778999999999753 54544666665
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=315.96 Aligned_cols=185 Identities=27% Similarity=0.452 Sum_probs=161.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---ccccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ...++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence 4567999999999999999999999999999999999965 367899999998764 23467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+.... ..+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++|||||+
T Consensus 89 tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 89 SVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDR-----PVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred CHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999875311 123567889999999876655 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|||+.++..+.+.|++++++|+|+|++||++.. +...||+++.+
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999998889999999999764 66789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=315.65 Aligned_cols=180 Identities=30% Similarity=0.427 Sum_probs=154.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.+||+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 3467999999999999999999999999999999999964223678999999988743 1 2345999999999898
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|+++++. . ..+.||||||||++||++|+.+|++++||||
T Consensus 91 ~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 91 GVKNADFLR----------------------------------Y-----VNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred CccHHHHHh----------------------------------h-----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888887650 0 1247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++|++++.|+.+ +.+++.
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEIE 196 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhhc
Confidence 9999999999999999999877999999999975 4555 79999999999999999554 555443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=322.29 Aligned_cols=194 Identities=30% Similarity=0.505 Sum_probs=172.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
++++..+.-.++||-|+||||||||+|+|+|... |++|.|.+||..+.+ ..+++||||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777757999999999999999999999764 679999999986531 246889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+.||.|+.... .....+++.+.||++|..+. ++..|||||||||+|+|||+++|++|++|||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 23457889999999998875 57899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|-..+.+++-.|++|+++ ...|+.+||.+ .|+.+++|+|++|++||+...|+.+++.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 78999999996 57999999999999999999999998754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=357.08 Aligned_cols=205 Identities=27% Similarity=0.469 Sum_probs=174.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-Ccc---CCc-------cccccEEEEccC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---YSK-------SLKSKIGFVTQD 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~---~~~-------~~~~~i~yv~Q~ 74 (583)
.+.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++ |.+ +.. ..++.++|++|+
T Consensus 296 ~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 296 VVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 3579999999999999999999999999999999999653 578999996 532 211 234579999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+.+++.+||+||+.+..... .+.++.+++++++++.+||.+ ..+ ..+.+|||||||||+||++|+.
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILD-----KYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred cccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999999998764321 233334567889999999975 233 3567999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|++|+|||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|+++..|+++++.+
T Consensus 445 ~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999765 899999999975 5778999999999999999999887643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.91 Aligned_cols=200 Identities=28% Similarity=0.416 Sum_probs=172.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+|+||||||||+|+|+|... |.+|+|.+||.++++ .+++.|+||+|++.+|+.
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 3679999999999999999999999999999999999653 578999999998753 468899999999999987
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. ..+ +++++++++.+|+.+ -.||.+|. ....||||||||++|||||+.+|++|
T Consensus 430 Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 430 TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998852 122 234566677776543 34676764 45689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+++++.+
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999864 699999999984 456799999999999999999999863
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=325.84 Aligned_cols=200 Identities=34% Similarity=0.538 Sum_probs=160.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|+..+++ .
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 467999999999999999999999999999999999965 3679999999987642 24567999999998886 6
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+... ..+..+ +.+.++..++.+. .++.. +..++.||||||||++||++|+.+|+++
T Consensus 90 tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 90 TIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred hHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987531 112211 2222333333221 11111 2346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|++++..
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999977 9999999999754 5 459999999999999999887654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=325.58 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=171.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCC--------ccccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS--------KSLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~--------~~~~~~i~yv~Q 73 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.... + +.+|+|.++|.++. ...++.++|++|
T Consensus 27 ~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 346799999999999999999999999999999999997542 1 26899999997652 124567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.+++. ||+||+.+...... ....+..++++++.++.+++.+...... +..+..||||||||++||++|+.+|++
T Consensus 107 ~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 182 (265)
T PRK14252 107 KPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEI 182 (265)
T ss_pred CCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 99999987653221 1112233456788888888742111111 234678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|+.++..
T Consensus 183 lllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 183 LLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999976 689999999964 577899999999999999999987763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=358.73 Aligned_cols=202 Identities=23% Similarity=0.435 Sum_probs=170.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccC---CCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQD---DVLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~---~~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+ ..++.+|||+|+ ..+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 48999999999999999999999999999999999653 578999999987642 234679999998 46889
Q ss_pred CCCHHHHHHHHHHcC---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 80 HLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+||+||+.+....+ ... . .+.++.+++++++++.+|+. +..++ .+.+|||||||||+||++|+.+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ-----NITELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-----ccccCChHHHHHHHHHHHHhcCCC
Confidence 999999998753211 000 0 12233345688999999996 55665 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
+|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|+++..++.
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999888999999999975 57789999999999999988866
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=317.36 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=164.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence 45679999999999999999999999999999999999653 578999999987753 234569999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+. . ..+++++++++.++|.+..++. +..||||||||++||++++.+|++++|||||+||
T Consensus 100 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 100 LENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred HHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988654321 1 1234567889999998766654 5789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+.++..+.+.|++++++|+|||++||++. ++.+.||++++++.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999888999999999975 58899999999863
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=330.14 Aligned_cols=200 Identities=22% Similarity=0.406 Sum_probs=168.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... .+|+|+++|.++.. .+++.++||+|++.+|+.
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~- 91 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG- 91 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-
Confidence 4579999999999999999999999999999999999753 47999999988642 356789999999999985
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
||+||+.... ..+ .+++.+.++.+||.+..+...++ +....||||||||++|||||+.+|++|+
T Consensus 92 tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 92 TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999996321 112 23466778888987655543221 1235699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. .||+|++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999875 4899999999974 454 599999999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=367.21 Aligned_cols=203 Identities=34% Similarity=0.552 Sum_probs=173.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|.|.|... +.+|+|.+||.++++ .+|+.|+||+||+.+|. -
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 5789999999999999999999999999999999998543 578999999998753 57899999999999998 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||+||+.++.. ..++++..+.++ +.++.+ .+..||.+| +....||||||||++||||++.+|++|+|
T Consensus 418 TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 418 TIRENIALGRP-----DATDEEIEEALKLANAHEFIANL--PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhC--cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998631 134444443332 333333 456789888 45678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+||+.+...+.+.++++. +++|+++++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 490 DEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 490 DEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred eccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999887 57899999999854 5 4599999999999999999999876
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=375.57 Aligned_cols=199 Identities=31% Similarity=0.487 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|++|++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.+|||+|++.+|+.
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 567 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG- 567 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-
Confidence 4679999999999999999999999999999999999653 678999999998753 468899999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.++++..|+. +-.||.+|. ...+||||||||++|||||+++|++|
T Consensus 568 Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 568 TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998641 1 12332 344555555543 345677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++.++++.|++ .++|+|+++|+++. .+.||+|++|++|++++.|+++++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999986 48999999999753 56799999999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=364.87 Aligned_cols=200 Identities=34% Similarity=0.606 Sum_probs=172.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+|+|+|.. ++.+|+|.+||.++.+ .+|+.++||+||+.+|+. |
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 429 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW--DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-T 429 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-c
Confidence 57999999999999999999999999999999999965 3678999999998753 467889999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++||+.++. + ..+ ++++.+.++..++.+. .||.+|. ....||||||||++|||+|+++|++|+|
T Consensus 430 i~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 430 LRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred HHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998752 1 122 3456777888887643 4677764 3678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+.+++.+
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999986 48999999999864 46699999999999999999998764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=321.64 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|. +++++|+..+.+.+|+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE---------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE---------EeEEecccCCCCCCcHH
Confidence 45679999999999999999999999999999999999653 67899999984 45778887788889999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+..... ..+.++..+.++++++.+++.+..++ .+++||||||||++||++|+.+|++|+|||||+|||
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQ-----PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 9998764432 23345555667888999999876665 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|+++++.+
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999878999999999964 5778899999999999999999888765
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=306.98 Aligned_cols=159 Identities=33% Similarity=0.632 Sum_probs=144.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 3579999999999999999999999999999999999653 578999999987642 34577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+. ||||||||++||++|+.+|++++|||||+|
T Consensus 90 v~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 90 VRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred HHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999863 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999888999999999975 57778999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=291.59 Aligned_cols=206 Identities=32% Similarity=0.526 Sum_probs=181.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----------ccccccEEEEcc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----------KSLKSKIGFVTQ 73 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----------~~~~~~i~yv~Q 73 (583)
++..++|.||+++.++||.+.++||||||||||+|.|.= +. -+.+|+..+.|...+ ..+|+.+|+|+|
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le-~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LE-MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-Hh-CCCCCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 566789999999999999999999999999999999984 33 357899999876432 146789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+-.++|.+||.|||.-+. +|. ..+++++.+.++.++++.+.|.+.+|. ++-.|||||+|||+|||||+.+|++
T Consensus 90 qy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcE
Confidence 999999999999997643 222 246788888999999999999998886 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|++||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|.+|+|++.|+.+.
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 9999999999999999999999999999999999999864 3567889999999999999998753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=355.87 Aligned_cols=205 Identities=23% Similarity=0.421 Sum_probs=173.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+|||+|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 46999999999999999999999999999999999753 578999999987642 2346799999995 5788
Q ss_pred CCCHHHHHHHHHHcCCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+||.||+.+....... ...+.++.+++++++++.+||. +..++ .+.+|||||||||+||++|+.+|++|+
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ-----AIGLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC-----chhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999999875321110 0122334456788999999995 55554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999888999999999975 57889999999999999999987764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=323.35 Aligned_cols=191 Identities=26% Similarity=0.468 Sum_probs=163.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL--T 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l--T 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++| +..++|++|++.+++.+ |
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------ccCEEEeccccccccccChh
Confidence 35679999999999999999999999999999999999753 5789999987 24699999998877764 7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.+++.+. + ... .+++.++++.+|+.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 86 ~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 86 VNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred HHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 88776431 1 111 24577899999998776653 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+++..|++++..
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999876 899999999975 5778899999996 4799999988753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=354.04 Aligned_cols=206 Identities=21% Similarity=0.385 Sum_probs=173.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~ 77 (583)
++.+|+|+||++++||+++|+||||||||||+|+|+|... |+.+|+|.++|+++.. ..++.++|++|+. .+
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l 350 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI 350 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence 4579999999999999999999999999999999999753 3468999999987642 2356799999995 58
Q ss_pred CCCCCHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 78 FPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
++.+||+||+.+...-... ......+.+++++++++.+++.+ ..++ .+..||||||||++||++|+.+|++|
T Consensus 351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~la~al~~~p~ll 425 (500)
T TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-----PIGRLSGGNQQKAVLAKMLLTNPRVL 425 (500)
T ss_pred CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-----ccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 8999999999875321110 01223444567889999999964 4454 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+|||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 426 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999888999999999975 578899999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=344.66 Aligned_cols=201 Identities=33% Similarity=0.572 Sum_probs=173.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+.++|+|+|+++++||.+||+|+||||||||++.|.|.. .+.+|+|.+||.++.. ..++.+++++|...+|.+
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~--~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~- 426 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG- 426 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc--CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-
Confidence 347999999999999999999999999999999999965 3679999999988742 367789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|+++||..+. |. .+. +.+.++++++||++.. |+.+| +..+.||||||||++|||+|++|.+++
T Consensus 427 Tlr~NL~lA~----~~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 427 TLRDNLRLAN----PD-ASD----EELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred HHHHHHhhcC----CC-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 9999998763 22 233 4466778888886543 44555 456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||.|||+.+..++++.|.+-++ |||+|++||+... .+.||+|++|++|++++.|.+++++.
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999998765 9999999999764 57899999999999999999999865
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=371.64 Aligned_cols=199 Identities=30% Similarity=0.534 Sum_probs=166.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||+++.+ .++++++||+||+.+|+.
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g- 569 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG- 569 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.++. + ..+ ++++.++++..++. +-.||.+|+ ...+||||||||++|||+++++|+|+
T Consensus 570 TIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 570 SVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred CHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 122 23355566666554 335677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999988 22 235899999999975 357799999999999999999999864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=371.10 Aligned_cols=202 Identities=31% Similarity=0.534 Sum_probs=171.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.++||+|++.+|+.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 4679999999999999999999999999999999999653 678999999998753 468899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. + ..+.+ ++.++++..++ .+-.||.+|+ ....||||||||++|||||+++|+++
T Consensus 554 TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 554 TLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred hHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 12333 34444554444 3445777764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+++++++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999864 899999999985 3578999999999999999999998653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=310.79 Aligned_cols=184 Identities=26% Similarity=0.408 Sum_probs=157.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 4567999999999999999999999999999999999965 3678999999987642 2456799999999899999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.||+.+....+. . + ++++.++++.+|+.+..++. +.+||||||||++||++++.+|++++|||||+
T Consensus 89 tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 89 SALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987653321 1 1 34578899999998766653 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
|||+.++..+.+.|++++++|.|||++||++.. -.+|+++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999998889999999999753 24677654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=318.31 Aligned_cols=194 Identities=27% Similarity=0.461 Sum_probs=160.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.+ ..++.++|++|++.+++ .
T Consensus 16 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 357999999999999999999999999999999999965 3678999999987642 34678999999998776 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+.. ... .+++.+.++.+++.+..++ .. +..+.+||||||||++||++|+.+|+++
T Consensus 93 tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 93 TIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred hHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986421 112 2335556666666543321 11 2356899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+|||||+|||+.++..+.+.|+++++ +.|||++||++.. +. .||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999864 6899999999754 54 599999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.03 Aligned_cols=206 Identities=33% Similarity=0.581 Sum_probs=172.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
+..+..||+|+|+.|++||.+||+|||||||||++++|.+.. . |.+|+|++||.++.. .+|.+||.|.|+|.+|
T Consensus 362 sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-d-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-D-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-C-CCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 344668999999999999999999999999999999999854 3 579999999998853 5688999999999888
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
. .|++||+.|+. | +.+.++..+.+ .+.+. .|.+-.+|.+|.+.+ +||||||||++|||||+.||+|
T Consensus 440 ~-~tI~eNI~~G~----~-dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 440 A-TTIRENIRYGK----P-DATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred c-ccHHHHHhcCC----C-cccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCE
Confidence 6 59999999862 1 23344333322 22232 356667888886543 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...+.+.|++.. +|+|.|+++|+.+. + +.+|+|++|++|++++.|+++|+++
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-h-hccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999998865 59999999999764 5 5599999999999999999999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=354.38 Aligned_cols=205 Identities=20% Similarity=0.383 Sum_probs=173.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 5899999999999999999999999999999999965 3578999999987642 2346799999996 4889
Q ss_pred CCCHHHHHHHHHHcCC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+|+.||+.+...... +.. ....+.+++++++++.+|+. +..++. +..|||||||||+||++|+.+|++|+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccCCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987532110 001 12233345688999999994 555654 56999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++.++++.|++++++|.|||++|||+. ++.++||++++|++|++++.|+++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999988999999999965 57889999999999999999987653
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=314.21 Aligned_cols=190 Identities=26% Similarity=0.422 Sum_probs=159.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC--Cc--cCCc-------cc-cccEEEEccC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYSK-------SL-KSKIGFVTQD 74 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~--g~--~~~~-------~~-~~~i~yv~Q~ 74 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++ |. ++.. .. ++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 579999999999999999999999999999999999653 578999998 42 3321 11 3569999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+++.+||+|++.+..... ....++..+++.++++.+|+.+. .+. .+.+||||||||++||++|+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764322 12334455678899999999753 333 4679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+.||+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999987899999999995 34667899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=340.07 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=183.0
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
+.+..++|+||||++++||++||+|.||||||||+|+|+|.. ++++|+|.+||++... .....|+.|.||..+
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 456678999999999999999999999999999999999965 3789999999998741 235679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.|+|||.||+.++...+.+ .-++++...+++.++|+.+|+....++. +.+||+||||.|.||+||..++++|+|
T Consensus 95 ~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999876543321 2356788888999999999996445554 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||||+.|+......+.+.+++|+++|.+||++||.. .|++++||+|.+|.||+.+..++.
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999995 579999999999999999988883
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=306.18 Aligned_cols=160 Identities=28% Similarity=0.541 Sum_probs=144.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFPH 80 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~~ 80 (583)
+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999653 678999999987643 2356799999984 57888
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+|++||+.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976420 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999877999999999964 57788999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=332.05 Aligned_cols=186 Identities=31% Similarity=0.524 Sum_probs=163.2
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 007952 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 102 (583)
Q Consensus 25 i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 102 (583)
|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||+||+.|....+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999653 679999999988743 23567999999999999999999999976432 23445
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 007952 103 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181 (583)
Q Consensus 103 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~- 181 (583)
+.+++++++++.+||.+..++ .+.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556778999999999877665 46799999999999999999999999999999999999999999999999765
Q ss_pred CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 182 g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999975 578899999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=358.99 Aligned_cols=204 Identities=33% Similarity=0.537 Sum_probs=168.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+.
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999988753 457889999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|++||+.+.. + ..+.++..+ ..++.++.+ .+-.|+.+|. ....||||||||++|||||+++|++|+|
T Consensus 407 ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 407 TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997532 1 123333221 123444443 2233566653 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++.|+++++.+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999998767899999999975 357899999999999999999988653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=306.59 Aligned_cols=161 Identities=37% Similarity=0.645 Sum_probs=145.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+ ..++.++|++|++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 3467999999999999999999999999999999999965 3578999999987642 2457899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|++||+.+. ||||||||++||++|+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 89 PHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 899999987541 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999887 899999999965 5667899999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=371.26 Aligned_cols=201 Identities=26% Similarity=0.423 Sum_probs=170.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|++|++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.+|||+|++.+|+.
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 4679999999999999999999999999999999999653 678999999998743 568899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++.. + ..+.+ ++.+.++..++ .+-.||.+|. ...+||||||||++||||++++|++|
T Consensus 563 TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 563 SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999987521 1 22332 34444554444 3345777764 45789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999985 4899999999975 357899999999999999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=321.33 Aligned_cols=191 Identities=33% Similarity=0.552 Sum_probs=157.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 103 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RS 103 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hh
Confidence 46999999999999999999999999999999999965 3678999999987642 23567999999998886 59
Q ss_pred HHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|+||+.+.... ..... ......+++.++.+ |+++..+. .+++||||||||++||++|+.+|++++||
T Consensus 104 v~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllD 175 (226)
T cd03248 104 LQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQRVAIARALIRNPQVLILD 175 (226)
T ss_pred HHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999875321 11110 11112356778888 77655443 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||++++|++|++
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 176 EATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 99999999999999999999875 6899999999764 5 45999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=352.80 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=171.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|+. .+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 3689999999999999999999999999999999965 3578999999987642 1245799999984 5888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|+.||+......+.+........+++++++++.+||+ +..++ .+++|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-----AARTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccC-----ccccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986421111111111223345688999999997 55565 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999888999999999975 57889999999999999999887653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=360.34 Aligned_cols=201 Identities=28% Similarity=0.485 Sum_probs=169.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+.
T Consensus 347 ~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 423 (588)
T PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR- 423 (588)
T ss_pred CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-
Confidence 3579999999999999999999999999999999999653 578999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.+.++..++. +-.||.+|. ..+.||||||||++|||+|+++|+++
T Consensus 424 Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 424 SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 2 12333 244445544443 345676664 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999875 4799999999974 467899999999999999999988753
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=308.94 Aligned_cols=183 Identities=27% Similarity=0.386 Sum_probs=156.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|+++|+++.+ ..++.++|++|+..+++.+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 89 (200)
T PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89 (200)
T ss_pred CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCC
Confidence 35679999999999999999999999999999999999653 678999999987742 3467899999999988999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+..... . .+.+++++++.+++.+..++ .+.+||||||||++||++++.+|++|+|||||+
T Consensus 90 tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 90 TLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDY-----PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred CHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999998864211 1 12467889999999765554 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
|||+.++..+.+.|++++++|.|||++||++.. .+.+|...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999998789999999999753 46677543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=309.43 Aligned_cols=187 Identities=26% Similarity=0.429 Sum_probs=158.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||
T Consensus 13 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90 (207)
T ss_pred CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcH
Confidence 34679999999999999999999999999999999999653 578999999987532 246679999999988899999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+. . ..++++++++.+||.+..+. .++.||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 91 AENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987653321 1 12347889999999865554 35789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+.++..+.+.|++++++|+|||++||++.. +.. |+++-+..
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 9999999999999998889999999999753 543 88877743
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=359.17 Aligned_cols=201 Identities=29% Similarity=0.486 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++++ .++++++||+|++.+|+.
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 420 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND- 420 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999988652 467889999999999976
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.++. ++..+. ++++++++..|+. +-.||.+|+. .+.||||||||++|||+++.+|+++
T Consensus 421 Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 421 TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 112232 3455566666553 3356777643 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+||||||+||+.++..+++.|++++ +++|+|++||++. ..+.||+|++|++|+++..|+.++..
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999985 4799999999974 46889999999999999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=351.58 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=168.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVL--F 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~--~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|.++.. ..++.++|++|++.. +
T Consensus 14 ~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML 91 (490)
T ss_pred CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence 45679999999999999999999999999999999999653 578999999976532 234569999998642 1
Q ss_pred -C-----CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 79 -P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 79 -~-----~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
+ .+||+|++.+. .+.+++++++++.+||++..+. .+.+|||||||||+||++|+.+|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 92 SPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDR-----RFKYLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred ccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhC-----CcccCCHHHHHHHHHHHHHHcCCC
Confidence 1 47888877431 1234568899999999876665 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999888999999999975 577899999999999999999987753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=337.74 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=169.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+. ++.+...+.+.+|++||
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------LIAISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee---------eEEeccccCCCCcHHHH
Confidence 569999999999999999999999999999999999653 6789999999652 22234456777999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+..... ..+.++..++++++++.++|.+..++. +++||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 98754322 233455556788899999998766653 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHH
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 224 (583)
++..+++.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++...|
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999888999999999975 577889999999999999999998876544
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=299.12 Aligned_cols=218 Identities=29% Similarity=0.392 Sum_probs=190.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~~l 81 (583)
|.||++||++|++||+++||||||||||||.++|+|......++|+|.++|+++. ++.|..+...+|.|.-+|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 6999999999999999999999999999999999997554568999999999875 24577899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|+.+.|..+...+....-...+..+++++.++.+++.+ ..+..+ -.++|||||||..|+..++.+|++.+||||-
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v----N~GFSGGEkKR~EilQ~~~lePkl~ILDE~D 172 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV----NEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc----CCCcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence 99999998776533221113456778899999999986 444443 3589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc--CeEEEEcCCeEEEEcChhhHHHHHHhcCCCC
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGKASEAMAYFSSIGCSP 231 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 231 (583)
||||..+-+.+-+.++++++.|.+++++||.. .+.++. |++.+|.+|+|+..|.+ ++..+++.-||.|
T Consensus 173 SGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999999999999999999999999984 577776 99999999999999999 8888999988864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=302.58 Aligned_cols=155 Identities=35% Similarity=0.634 Sum_probs=140.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++|++|++.+++. |
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-c
Confidence 569999999999999999999999999999999999653 578999999987642 346779999999988874 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+ ||||||||++||++|+.+|++++|||||+|
T Consensus 92 v~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 92 IAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 99886 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999878999999999975 44 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=320.37 Aligned_cols=199 Identities=24% Similarity=0.403 Sum_probs=159.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~t 110 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GS 110 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cH
Confidence 579999999999999999999999999999999999653 678999999987643 34677999999998887 49
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.... ....+...+ .+++.++.+ |++...+ ...+.||||||||++||++|+.+|++|+
T Consensus 111 v~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lll 179 (257)
T cd03288 111 IRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-----EGGENFSVGQRQLFCLARAFVRKSSILI 179 (257)
T ss_pred HHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999985321 111111111 122333333 3332222 2467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.++++. +++|||++||++.. +. .||++++|++|+++..|++++..+
T Consensus 180 lDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 180 MDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999975 48999999999864 54 499999999999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=303.46 Aligned_cols=161 Identities=34% Similarity=0.616 Sum_probs=143.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|+
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 36999999999999999999999999999999999965 3578999999987642 34677999999998876 699
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+ +..||||||||++|||+++.+|++++|||||+||
T Consensus 92 ~~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 92 RNNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred HHhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8886 2479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+.++..+++.|++++ ++.|||++||++.. + +.+|++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 9999999999999986 58999999999764 5 569999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=290.75 Aligned_cols=194 Identities=28% Similarity=0.481 Sum_probs=170.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~~ 80 (583)
++.+||+|+|+.+.+||..+|.||||||||||+|+++.+. ++++|++++.|++++ +.+|++|+||.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li--sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc--CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 4678999999999999999999999999999999999754 468999999999986 3578999999999999997
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
||++|+.|....|..+. ..++..+.++.+++.+..- +..+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 99999999877664322 3456778899999976432 3357799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 161 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+||+.+++.|-++|.++. ++...++.+||++.. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 678999999999865 5688999999999876
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=308.64 Aligned_cols=183 Identities=23% Similarity=0.420 Sum_probs=153.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~t 97 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GT 97 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-cc
Confidence 479999999999999999999999999999999999653 578999999987632 24567999999998887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+.. ..+. +.+.+.++ + + ..+..||||||||++|||+|+.+|++++|||||+|
T Consensus 98 v~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 98 IRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 999996521 1121 12333333 2 2 24679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||+.++..+.+.|++++ +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 156 IDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999985 48999999999764 54 4999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=363.95 Aligned_cols=201 Identities=29% Similarity=0.526 Sum_probs=169.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.++||+|++.+|+.
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~- 545 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR- 545 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-
Confidence 4679999999999999999999999999999999999653 578999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.+.++..++ ++-.||.+|. ...+||||||||++|||||+++|++|
T Consensus 546 ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 546 SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 2 22333 23344444443 3335677764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||++||+.++..+.+.|+++. +++|+|++||+++. .+.||++++|++|++++.|+++++.+
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999985 58999999999853 46799999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=318.18 Aligned_cols=207 Identities=27% Similarity=0.504 Sum_probs=184.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
...+++++|+++++||.++|+|+||||||||-.+|.+++ +.+|+|.++|+++.. .+|+++-.|+||+ .
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 356899999999999999999999999999999999865 245999999998852 3578899999997 5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+-|.+||.|-+.-+.....| ..+.+++.+++.+.|+++||+... -++++++.|||||||++||||++.+|++++|
T Consensus 376 LsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 89999999999888765443 468899999999999999997532 2468999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+||-.-+.+|+++|++|.+ .|.+-++++||.. .+..+||+|++|++|+||+.|+.+++.
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 999999999999999999999975 4999999999964 578899999999999999999999875
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=354.58 Aligned_cols=201 Identities=27% Similarity=0.512 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||+++.+ .+++.++||+|++.+|+.
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF--DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 357999999999999999999999999999999999965 3679999999998743 457889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. + ..+.+ ++++.++..++ ++-.+|.+|. ....||||||||++|||+|+++|+++
T Consensus 404 ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~il 473 (569)
T PRK10789 404 TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEIL 473 (569)
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 12333 23344444443 3445677764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|++++|++|+++..|+.+++.+
T Consensus 474 llDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999985 58999999999753 46799999999999999999988753
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=308.73 Aligned_cols=189 Identities=27% Similarity=0.460 Sum_probs=152.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~ 77 (583)
++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 4679999999999999999999999999999999999753 578999999987532 134679999999988
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
+ ..|++||+.+... ... ++..++++.+++.+..+ +.. +..+..||||||||++||++|+.+
T Consensus 91 ~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 91 L-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred c-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7 5799999977421 111 12344556666543221 111 234679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|++++|||||+|||+.++..+++ .++.++++|.|||++||++.. + ..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999998 677776678999999999754 5 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=302.69 Aligned_cols=165 Identities=35% Similarity=0.616 Sum_probs=143.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 467999999999999999999999999999999999965 3679999999987642 23445777777
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+++.+|+.+..++ .++.||||||||++|||+|+.+|++++|||||+
T Consensus 81 -----------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 126 (180)
T cd03214 81 -----------------------------ALELLGLAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTS 126 (180)
T ss_pred -----------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5566677654443 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|++++.|
T Consensus 127 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 127 HLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999876 899999999975 467899999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=354.69 Aligned_cols=199 Identities=30% Similarity=0.516 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|++++|||.++|+||||||||||+|+|+|... +.+|+|.+||.++++ .+++.++|+||++.+|+. |
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-T 429 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-S 429 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-c
Confidence 679999999999999999999999999999999999653 578999999988753 457789999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. |. .+. +++++.++..|+.+ -.++.+|+ ....||||||||++|||+++++|++|+
T Consensus 430 i~~Ni~~~~----~~-~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 430 VMENIRYGR----PD-ATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred HHHHHhcCC----CC-CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 999998742 11 222 33555566655532 34566654 357899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||||+||+.++..+++.|+++. +++|+|++||++. ..+.+|+++.|++|+++..|++++..
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999999999999999985 4899999999974 45789999999999999999988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.58 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=159.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-ECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|. ++|... .+.|+..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 47999999999999999999999999999999999653 6789997 777532 13346678899999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+....+. .+.++.. +.+.+.++|++..++. ++.||||||||++||++|+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765331 2222222 2344556777666654 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
++..+.+.+.+..+ ++|+|++||++. .+.+.||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866443 468999999975 47778999999999999999999999887654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=328.55 Aligned_cols=210 Identities=32% Similarity=0.527 Sum_probs=180.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
.+.++++|+|+||.+++||.++|+||||||||||.|+|.|.. ++.+|.|.+||.+++. .+-+.|||+|||-.+|
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 455689999999999999999999999999999999999954 4789999999998753 4568899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+. ||.||+.= ..++.+.+. +.+.|+|++- .+.+-.||.+|+. ...||||||||+++||||-.+|.+
T Consensus 423 ~G-TIaeNIaR-----f~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 423 DG-TIAENIAR-----FGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred CC-cHHHHHHh-----ccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcE
Confidence 97 99999952 222222222 2223555554 4677789999853 678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999986 578899999999999999999999998754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=357.63 Aligned_cols=206 Identities=30% Similarity=0.524 Sum_probs=177.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
+..+.+||+|+|+++++||.+||+|||||||||.+.+|-. .++ |++|+|.+||+++++ .+|+++|.|.|+|.||
T Consensus 999 sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR-fYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 999 TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER-FYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH-hcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhh
Confidence 4567789999999999999999999999999999999996 433 578999999999864 5789999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.. |++||+.|+. .+ .+.++..+.+ .+.+ .+|.+-.||.+|. ...+||||||||++||||+++||+|
T Consensus 1077 ~~-TIrENI~YG~----~~-vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1077 NG-TIRENIAYGS----EE-VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred cc-cHHHHHhccC----CC-CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCe
Confidence 86 9999999981 11 4444443322 2222 2678888999985 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||.||+||+++.+-+.+.|.+.. .|+|.|++.|+++. .+.||.|.++++|+|++.|+.+++++
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999965 59999999999864 57899999999999999999999876
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=350.75 Aligned_cols=200 Identities=28% Similarity=0.426 Sum_probs=165.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||.++.+ .+++.++||+|++.+++ .|
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~t 424 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY--DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RS 424 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC--CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-cc
Confidence 56899999999999999999999999999999999965 3679999999988743 46788999999999887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. + ..+.++.. +.++..+ +.+..++.+|. ...+||||||||++|||+|+.+|++|+
T Consensus 425 i~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 425 IRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred HHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 12333332 2233322 22334555653 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|+.++..+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999885 48999999999753 4 6799999999999999999988754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=324.36 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=181.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~ 79 (583)
+...+++|||+++++||++||+|+||||||||+++|.|... |++|+|.++|++.. +..+..||+|.|+..++|
T Consensus 15 ~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 45678999999999999999999999999999999999653 68999999999864 235678999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
++||.||+..+..-......+.++..++++++.++.||+-..|.+ +..||-||||||.|-++|..+|++|+||||
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~-----V~dLsVG~qQRVEIlKaLyr~a~iLILDEP 167 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK-----VADLSVGEQQRVEILKALYRGARLLILDEP 167 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccce-----eecCCcchhHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999876432222356778888999999999998666654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|+-|-|....++++.|++++++|+|||++||... |+.+.||++.+|.+||++..-+
T Consensus 168 TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 168 TAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999965 6899999999999999876655
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=302.92 Aligned_cols=179 Identities=28% Similarity=0.459 Sum_probs=144.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++| .++|++|++.+++ .|++||
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g---------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG---------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC---------EEEEEecCchhcc-CcHHHH
Confidence 36999999999999999999999999999999999965 36789999998 5999999998885 699999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+.+... ...+ +..+.++.+++.+.. ++.. +..+.+||||||||++||++|+.+|++++||||
T Consensus 86 l~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCHH----HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987421 1111 122333333332211 1222 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 160 TSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 160 tsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|+|||+.++..+.+ ++++++++|+|||++||++. .+.. +|++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999998 56777666899999999975 3555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=305.71 Aligned_cols=192 Identities=26% Similarity=0.302 Sum_probs=157.6
Q ss_pred cccceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~-----~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~ 79 (583)
+..+.++|++++++ +||+++|+||||||||||+++|+|... +.+|+|.++|. .++|++|+....+
T Consensus 5 ~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~ 74 (246)
T cd03237 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADY 74 (246)
T ss_pred ccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCC
Confidence 34457888888887 689999999999999999999999653 67899999984 5999999988777
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+|++.+...... . ....++++++.+||.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 75 ~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 75 EGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDR-----EVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred CCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999976432110 1 12346788999999876665 3568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE--EEcChhh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 219 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 219 (583)
|++||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|+++..+ ..+++.+
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999999999764 899999999965 577789999999764333 3444444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=379.12 Aligned_cols=203 Identities=27% Similarity=0.462 Sum_probs=171.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--------------------------------------
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------------------------------------- 47 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-------------------------------------- 47 (583)
++++|+|+|++|++|+.+||+||||||||||+++|.|... |
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEF 1258 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC-Ccccccccccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999999999999999654 3
Q ss_pred ---------------CcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 007952 48 ---------------TVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 108 (583)
Q Consensus 48 ---------------~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v 108 (583)
+.+|+|.+||.++.+ .+|+.||||+|++.+|+ .|++|||.|+. + ..+.++ +
T Consensus 1259 ~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~----~-~at~ee----I 1328 (1466)
T PTZ00265 1259 SLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK----E-DATRED----V 1328 (1466)
T ss_pred ccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC----C-CCCHHH----H
Confidence 258999999998753 57889999999999997 59999999862 2 233333 3
Q ss_pred HHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-H
Q 007952 109 IDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 180 (583)
Q Consensus 109 ~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~ 180 (583)
+++++..+ |++-.||.+|. ....||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|++++ .
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 34444433 45566888884 467899999999999999999999999999999999999999999999986 3
Q ss_pred CCcEEEEEecCCChHHHhhcCeEEEEcC----CeEE-EEcChhhHHH
Q 007952 181 AGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 222 (583)
Q Consensus 181 ~g~tii~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~ 222 (583)
+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++++++
T Consensus 1408 ~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1408 ADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 68999999999753 577999999999 9955 8999999863
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=293.55 Aligned_cols=152 Identities=38% Similarity=0.656 Sum_probs=137.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 79999999999999999999999999999999999653 578999999987642 24567999999998776 588
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.||+ ||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8876 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|+.++..+.+.|+++++ ++|||++||++. ++.. ||++++|++|+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999964 799999999975 4555 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=311.70 Aligned_cols=190 Identities=31% Similarity=0.460 Sum_probs=153.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g---------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG---------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------EEEEEeCccccccc-CHHH
Confidence 3579999999999999999999999999999999999753 6789999987 39999999988875 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.+.... .. .++.+.++.+++.+.. ++.++ ..+..||||||||++||++|+.+|++|+|||
T Consensus 117 nl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 117 NIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred Hhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99864211 11 1122334444443221 22221 2357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999865 5554 57999999999764 4 579999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=297.09 Aligned_cols=180 Identities=22% Similarity=0.311 Sum_probs=151.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++ +|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHH
Confidence 344555 999999999999999999999999999999653 67899999998875433456999999988888899999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+..... . ..++++++++.+++.+..++ .++.||||||||++||++++.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 90 NLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDE-----KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred HHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998864321 0 13457788899999876654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
.++..+.+.|++.+++|+|+|+++|++.. + +.+|-+
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhhee
Confidence 99999999998877779999999999753 3 446654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=343.21 Aligned_cols=203 Identities=28% Similarity=0.490 Sum_probs=178.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +++|+|.+||+++.. + .++.++|++|+..++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 579999999999999999999999999999999999753 678999999988653 1 146799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|+.||+.+..... ..+.++.++++.++++.+||.+..++. +..||||||||++|||+|+.+|++|+|||
T Consensus 99 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq~qrv~LAraL~~~P~lLllDE 170 (648)
T PRK10535 99 SHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQQQRVSIARALMNGGQVILADE 170 (648)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999998865322 234456667889999999998776654 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|+|++||++. ..+.||++++|++|++++.|++++..
T Consensus 171 P~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999878999999999975 34679999999999999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=336.17 Aligned_cols=204 Identities=20% Similarity=0.375 Sum_probs=167.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|+. .++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 468999999999999999999999999999999999653 578999999987642 1245699999985 478
Q ss_pred CCCCHHHHHHHHHH--c-CCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 79 PHLTVKETLTYAAL--L-RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 79 ~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+|+.+|..+... . ......+....+++++++++.+++. +..++ .+.+|||||||||+||++++.+|++|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~il 413 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGSLSGGNQQKVIIGRWLLTQPEIL 413 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccccCCcHHHHHHHHHHHHhcCCCEE
Confidence 88998877432210 0 1000012334456788899999995 34444 46799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+|||||+|||+.++..+++.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 414 lLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999888999999999965 578899999999999999877653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=287.13 Aligned_cols=147 Identities=32% Similarity=0.490 Sum_probs=133.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|
T Consensus 11 ~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------ 82 (163)
T cd03216 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAGIAMVYQ------ 82 (163)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcCeEEEEe------
Confidence 34679999999999999999999999999999999999653 678999999987642 13456888888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
||||||||++||++|+.+|++++||||
T Consensus 83 -----------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 83 -----------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred -----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
|+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++|++++
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999877999999999964 4678899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=286.23 Aligned_cols=152 Identities=32% Similarity=0.540 Sum_probs=135.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|. +.++|++|++.++ ..|++|
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~ 82 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLRE 82 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------ceEEEECCCCccc-cccHHH
Confidence 3679999999999999999999999999999999999653 57899999874 5799999998765 579999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+. .+++||||||||++|||+|+.+|++++|||||+|||+
T Consensus 83 nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98642 1358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++..+.+.|+++ ++|+|++||++. ..+.||++++|++|-
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999999999886 689999999974 347899999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=299.06 Aligned_cols=207 Identities=27% Similarity=0.419 Sum_probs=179.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccC-CCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQD-DVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~-~~~~~~lTv 83 (583)
.+.+|+||+|++|++++++|||||||||+||+|+|.+. |++|.|.+||+..-+ ++-+.+++|+-+ -.+...+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 47899999999999999999999999999999999764 679999999986532 234567776644 456666778
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.|.+......+ .++.++..++.+++.+.++|+...+. +++.||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~-----~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKW-----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhh-----hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 88877654333 46778888999999999999876654 57899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|..++..+.+.|++..+ ++.||+.+||+.+ ++.++||||++++.|+++|.|+.+++.+.|.
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999875 5899999999965 6899999999999999999999999887764
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=297.76 Aligned_cols=205 Identities=29% Similarity=0.481 Sum_probs=173.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccC--CC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQD--DV 76 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~--~~ 76 (583)
+++|+||+|+|++|++||-.+|+|||||||||||++++|.. ++.+|.+.+.|++.. .++|++||+|.-+ ..
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 56799999999999999999999999999999999999954 356899999998763 3578999999875 44
Q ss_pred CCCCCCHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 77 LFPHLTVKETLTYAA--LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+..+|+|-+.-+. ..-.......++..+++..+++.+|+.+.+|.. ...||-||||||.|||||+.+|++|
T Consensus 119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~-----~~~LS~Ge~rrvLiaRALv~~P~LL 193 (257)
T COG1119 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP-----FGSLSQGEQRRVLIARALVKDPELL 193 (257)
T ss_pred cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc-----hhhcCHhHHHHHHHHHHHhcCCCEE
Confidence 566778888775322 111222122355667789999999999988765 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|||||++|||...+..+.+.|.+++.. +.++|++||++. ++-..+++++++++|+++++|.
T Consensus 194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999865 789999999964 6888999999999999999884
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=374.55 Aligned_cols=200 Identities=22% Similarity=0.345 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++|+|+|++|++||.+||+||||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1248 ~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g- 1324 (1495)
T PLN03232 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG- 1324 (1495)
T ss_pred CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-
Confidence 3579999999999999999999999999999999999653 578999999998753 578899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.+.. ..+. +++.++++..++. +-.|+.+|. ...+||||||||++|||||+++|+||
T Consensus 1325 TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1325 TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997531 1233 3355556655553 334666763 45689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+++++++
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999875 48999999999754 4 5699999999999999999999864
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.05 Aligned_cols=201 Identities=27% Similarity=0.449 Sum_probs=166.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++++|+|+||+|++||+++|+||||||||||||+|+|... +++|+|.++|. ..++|++|++.+++.+||+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN-------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEeccCCcCCCCcHH
Confidence 45679999999999999999999999999999999999653 57899999873 3599999999999999999
Q ss_pred HHHHHHHH-c-----------CCCCC-----------------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh
Q 007952 85 ETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 135 (583)
Q Consensus 85 e~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg 135 (583)
|++.++.. . ..+.. ....+.+++++++++.+||.+..+. ..+.+|||
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~LSg 158 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY----GLMSEVAP 158 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc----CchhhcCH
Confidence 99986421 0 00000 0001234578899999999753321 23579999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEE
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYF 214 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~ 214 (583)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||++. .+.+.||++++|++|++ ++.
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999864 5899999999965 57789999999999999 588
Q ss_pred cChhhHHH
Q 007952 215 GKASEAMA 222 (583)
Q Consensus 215 G~~~~~~~ 222 (583)
|++++..+
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 99887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=373.65 Aligned_cols=199 Identities=22% Similarity=0.359 Sum_probs=169.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|++|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|+++++||||+.+|+. |
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-T 1328 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-T 1328 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-c
Confidence 479999999999999999999999999999999998653 578999999998863 578899999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++|||.+.. ..++ +.+.++++..++ ++-.|+.+|. ...+||||||||++|||||+++|+||+
T Consensus 1329 IreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1329 VRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred HHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999997631 1233 334455555444 3345777764 456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+++++++
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999975 48999999999764 4 5699999999999999999999874
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=342.35 Aligned_cols=173 Identities=35% Similarity=0.587 Sum_probs=146.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|.. ++.+|+|.+||.++.+ .+|+.++||+|++.+|+. |
T Consensus 347 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-T 423 (529)
T TIGR02868 347 SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL--DPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-T 423 (529)
T ss_pred CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-c
Confidence 356999999999999999999999999999999999965 3679999999988753 467889999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. | ..++ ++++++++..++. +-.||.+|+ ....||||||||++|||||+.+|++|+
T Consensus 424 I~eNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 424 VRDNLRLGR----P-DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred HHHHHhccC----C-CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998852 1 1232 3355566655553 445788875 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999864 489999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.04 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=163.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+++. ..+|||+|++.+++.+||.|
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e 89 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-------IKVGYLPQEPQLDPEKTVRE 89 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEecCCCCCCCCcHHH
Confidence 5789999999999999999999999999999999999753 57899999752 46999999999999999999
Q ss_pred HHHHHHH-c--------------CCCCC-CC-----------------HHHHHHHHHHHHHHcCCCccccccccCccCcc
Q 007952 86 TLTYAAL-L--------------RLPNT-LT-----------------KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132 (583)
Q Consensus 86 ~l~~~~~-~--------------~~~~~-~~-----------------~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 132 (583)
|+.++.. . ..+.. .. ..+..++++++++.+|+.. .+. .+.+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~-----~~~~ 163 (556)
T PRK11819 90 NVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA-----KVTK 163 (556)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC-----chhh
Confidence 9987531 0 00000 00 0012456788999999953 444 4579
Q ss_pred cChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 133 LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++. .+.+.||+|++|++|+++
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999873 49999999975 577899999999999986
Q ss_pred -EEcChhhHH
Q 007952 213 -YFGKASEAM 221 (583)
Q Consensus 213 -~~G~~~~~~ 221 (583)
+.|+.++..
T Consensus 240 ~~~g~~~~~~ 249 (556)
T PRK11819 240 PWEGNYSSWL 249 (556)
T ss_pred EecCCHHHHH
Confidence 888877643
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=339.43 Aligned_cols=184 Identities=35% Similarity=0.585 Sum_probs=154.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+. |
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-t 411 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-T 411 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-C
Confidence 579999999999999999999999999999999999653 678999999998753 467889999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. + ..++ +++++.++..++.+ -.||.+|. ....||||||||++|||+|+++|++++
T Consensus 412 i~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 412 IAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred HHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 1222 33455566655543 34677764 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 999999999999999999999985 5899999999974 35789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=304.53 Aligned_cols=213 Identities=26% Similarity=0.463 Sum_probs=185.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc----c---cc-ccEEEEc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK----S---LK-SKIGFVT 72 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~----~---~~-~~i~yv~ 72 (583)
.+...++++|||++++||.+||+|+||||||-..+.+.|+++.+. -+|+|.++|+++-. . .| .+|++++
T Consensus 20 ~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 20 GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence 456789999999999999999999999999999999999886542 47999999998631 2 22 5799999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 73 QDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 73 Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
|++ .+.|-.|+.+.+.-..++ ....++++.++++.++|+.+|+.+-.... +.++++|||||||||+||+||+++
T Consensus 100 QEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~ 175 (534)
T COG4172 100 QEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANE 175 (534)
T ss_pred cccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCC
Confidence 998 578888988877665443 45677888899999999999998755433 568999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||.||||++||...+.+|+++|++|.++ |..++++|||.+ -+.+++|+|.+|.+|++++.|+.+++.
T Consensus 176 P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred CCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999999999999999765 999999999975 477889999999999999999988764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=331.84 Aligned_cols=204 Identities=23% Similarity=0.399 Sum_probs=162.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|.. +++.+|+|.++|++... ..++.++|++|++.+++
T Consensus 271 ~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 3457999999999999999999999999999999999954 22258999999986531 23567999999876543
Q ss_pred --CCCHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 --HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 --~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
..|+++++.+.... ....... ++.+++++++++.+||.+ ..++ .+.+|||||||||+||++|+.+|++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~ll 423 (490)
T PRK10938 350 RVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADA-----PFHSLSWGQQRLALIVRALVKHPTLL 423 (490)
T ss_pred ccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccC-----chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 35777776543211 1111112 233557889999999986 5554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~ 216 (583)
+|||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ .+|++++|++|++++.-.
T Consensus 424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999998776 47999999975 4655 589999999999877543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=335.31 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=158.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||+++.+ .+++.++||+||+.+|+.
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 411 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY--QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ- 411 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-
Confidence 356999999999999999999999999999999999965 3678999999998753 467889999999998875
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~--~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
|++|| . . ...++.+++.++.+++.+..+. ++. ...+||||||||++|||+++++|++|+||||
T Consensus 412 ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 412 LLGPE---G------K----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhccc---c------C----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 78776 1 0 1223457788899988764332 211 1358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.||++++|++|++++.
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999987643 5899999999974 4678999999999999866
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=294.69 Aligned_cols=173 Identities=28% Similarity=0.496 Sum_probs=153.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
..+++||||++++||+++|+|+||||||||-|+|.|+.. +++|+|+++|+++....
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~---------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLS---------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcc----------------------
Confidence 479999999999999999999999999999999999653 67999999999854321
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+++..+++.++|+.+|+... ..+++++++|||||||+.|||||+.+|+++++|||+|.||..
T Consensus 82 --------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 82 --------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred --------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 34556789999999998642 123578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
.+.+++++|+++.++ |.|.++++||.+ .+..++|++.+|..|++|+.|+.+++..
T Consensus 144 iqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 144 VQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999865 999999999965 5788999999999999999999998753
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=331.95 Aligned_cols=191 Identities=23% Similarity=0.385 Sum_probs=162.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC--CCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV--LFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~--~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|. +.+||++|+.. +++.+|
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEcccccccCCCCCc
Confidence 34679999999999999999999999999999999999653 57899999873 46999999864 567799
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+|++.+.. .. ...+++++++++.+|+. +..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 401 ~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 467 (530)
T PRK15064 401 LFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467 (530)
T ss_pred HHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999986421 11 11235678899999994 44554 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 221 (583)
|||+.++..+.+.|+++ +.|||++|||+. .+.+.||++++|++|+++ +.|++++..
T Consensus 468 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 468 HMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999886 359999999965 577889999999999998 889887754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=365.44 Aligned_cols=199 Identities=23% Similarity=0.393 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+||+|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|+.++|||||+.+|+. |
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-T 1399 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-T 1399 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-c
Confidence 459999999999999999999999999999999999653 578999999998853 578899999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhC-CCEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN-PSLL 154 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~-p~il 154 (583)
++|||... ...+. +.+.++++..|+.+ -.|+.+|. ...+||||||||++|||||+++ |+||
T Consensus 1400 IreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~IL 1468 (1560)
T PTZ00243 1400 VRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFI 1468 (1560)
T ss_pred HHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 99999532 12232 44666777776653 34677764 4568999999999999999996 8999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|+++++++
T Consensus 1469 lLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1469 LMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4799999999975 356799999999999999999999864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=365.97 Aligned_cols=199 Identities=24% Similarity=0.341 Sum_probs=169.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|++|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+. |
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-T 1375 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-S 1375 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-c
Confidence 479999999999999999999999999999999998653 578999999999863 578899999999999987 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+||||.... ..+++ .+.++++..++. +-.|+.+|. ...+||||||||++|||||+++|+||+
T Consensus 1376 Ir~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1376 LRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred HHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999996311 12333 345566665553 335676763 456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||||+||+.+...|.+.|++.. +++|+|+++|+++. ...+|+|++|++|++++.|+++++++
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999865 48999999999754 45699999999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.28 Aligned_cols=198 Identities=28% Similarity=0.388 Sum_probs=161.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|++|++||+++|+|||||||||||++|+|... +++|+|.+++. ..+|||+|++.+++.+||+|
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e 87 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-------IKVGYLPQEPQLDPTKTVRE 87 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEeccCCCCCCCcHHH
Confidence 5679999999999999999999999999999999999653 57899999752 46999999999999999999
Q ss_pred HHHHHHHc-CC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCCccccccccCccCcc
Q 007952 86 TLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVINELGLERCQDTMIGGSFVRG 132 (583)
Q Consensus 86 ~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 132 (583)
|+.++... +. ......+ +..++++++++.+|+.. .++ .+..
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----~~~~ 161 (552)
T TIGR03719 88 NVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA-----DVTK 161 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-----chhh
Confidence 99875321 00 0000010 01245667788888853 333 4679
Q ss_pred cChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 133 LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++|+++
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGI 237 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876 359999999965 577889999999999975
Q ss_pred -EEcChhhHHH
Q 007952 213 -YFGKASEAMA 222 (583)
Q Consensus 213 -~~G~~~~~~~ 222 (583)
+.|+.++..+
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 7898887544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=360.79 Aligned_cols=197 Identities=26% Similarity=0.475 Sum_probs=159.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-CccCCc----cccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++ |+++.+ .+|+.||||+|++.+|+.
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~- 474 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN- 474 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-
Confidence 579999999999999999999999999999999999653 679999995 676642 357889999999999985
Q ss_pred CHHHHHHHHHHc-CC---------CC-----------------------------CC---------CHHHHHHHHHHHHH
Q 007952 82 TVKETLTYAALL-RL---------PN-----------------------------TL---------TKQQKEKRAIDVIN 113 (583)
Q Consensus 82 Tv~e~l~~~~~~-~~---------~~-----------------------------~~---------~~~~~~~~v~~~l~ 113 (583)
||+||+.++... +. +. .. .....++++.++++
T Consensus 475 TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~ 554 (1466)
T PTZ00265 475 SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSK 554 (1466)
T ss_pred cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHH
Confidence 999999986310 00 00 00 00012245667777
Q ss_pred HcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEE
Q 007952 114 ELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 185 (583)
Q Consensus 114 ~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~ti 185 (583)
.+++.+ ..||.+|. ...+||||||||++|||||+.+|+||+||||||+||+.++..+.+.|+++++ +|+|+
T Consensus 555 ~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv 633 (1466)
T PTZ00265 555 KVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633 (1466)
T ss_pred HhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence 776643 34666764 4778999999999999999999999999999999999999999999999976 58999
Q ss_pred EEEecCCChHHHhhcCeEEEEcCC
Q 007952 186 VTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 186 i~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+++|+++. + +.||+|++|++|
T Consensus 634 IiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 634 IIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999753 4 789999999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.39 Aligned_cols=191 Identities=21% Similarity=0.282 Sum_probs=159.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||.++|+||||||||||+++|+|... +++|+|.+||.++.+ .+++.++||+||+.+|+. |
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-t 431 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-L 431 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-h
Confidence 369999999999999999999999999999999999653 679999999998753 457889999999998875 8
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
++||.. + +..++++++.++.+++.+..+..- |-.....||||||||++|||+++.+|++++|||||+
T Consensus 432 i~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts 499 (555)
T TIGR01194 432 IGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499 (555)
T ss_pred hhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 888731 1 123445778899999876544322 112236799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH-HHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 162 GLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 162 gLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
+||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 500 ~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999998764 46567999999999975 4578999999999999753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=279.81 Aligned_cols=161 Identities=27% Similarity=0.380 Sum_probs=135.1
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+...+++|+|+|+++++|++++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 4 ~~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q--------- 67 (176)
T cd03238 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ--------- 67 (176)
T ss_pred cceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH---------
Confidence 3456789999999999999999999999999999999863 379999988732 222445888887
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhC--CCEEEEeCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEP 159 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~--p~illLDEP 159 (583)
.+.++.++|.+. .++ .++.||||||||++||++|+.+ |++++||||
T Consensus 68 --------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 68 --------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred --------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 235677788642 343 4679999999999999999999 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|+|||+.++..+.+.|++++++|+|||++||++.. + +.||++++|++|+..
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGK 167 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCC
Confidence 99999999999999999998789999999999753 4 679999999765443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=278.39 Aligned_cols=209 Identities=27% Similarity=0.443 Sum_probs=180.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC-ccCCc-----cccccEEEEccCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g-~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
-+.-.+|+|+||++.+||+-+|+|||||||||++++|+|.. ++.+|+++++| .++++ ..+..||--+|.+..
T Consensus 15 F~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 35668999999999999999999999999999999999964 46789999999 66643 246679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 78 FPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
|+.+||+|||+.+.....+- .....+.+++++++|...||.+.++.. ...||-||||++.|++-++++|+
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----A~~LSHGqKQwLEIGMll~Q~P~ 167 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPK 167 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----hhhhccchhhhhhhheeeccCCc
Confidence 99999999999875422110 012334556899999999999888764 45899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+||||++|+--....+.-++|++++. +++|+++.||.. -+.+++|+|.+|++|.+...|+.+++.
T Consensus 168 lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 168 LLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999999985 689999999964 578899999999999999999998874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=311.49 Aligned_cols=207 Identities=32% Similarity=0.527 Sum_probs=175.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~ 79 (583)
..+|++|+||||++.||+.+|++||||+||||++|+|-... + ..+|.|.+||++++ ..+|+.||.||||..+|.
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-d-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-D-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-h-ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 35789999999999999999999999999999999999643 2 46899999999985 357899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHH--HHHH-HHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVI-NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v--~~~l-~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+ |+..|+.|+- | +.+.++..+.+ .++= +.++..+-.+|++|.+ .-.|||||||||+|||+++.+|.+++|
T Consensus 626 d-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 626 D-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred c-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 7 9999999862 2 22344443322 2222 3467888889999854 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||.||+||..+.+.|...|.++++ ++|-|++.|..+. + -.+|.|+++++|+|++.|..+|++.
T Consensus 699 DEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999999999986 7888999999765 4 3589999999999999999999875
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=297.81 Aligned_cols=189 Identities=27% Similarity=0.386 Sum_probs=157.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-----------ECCccCCcc---cc---ccEEE
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPYSKS---LK---SKIGF 70 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-----------~~g~~~~~~---~~---~~i~y 70 (583)
.+|+|+| .+++||+++|+||||||||||||+|+|... +++|+|. ++|+++.+. .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 599999999999999999999999999753 6799996 788776421 11 24789
Q ss_pred EccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 71 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 71 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
++|+..+++. ++.+++.+.. .....++++.++++.+|+++..++ .+..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHhC
Confidence 9999888884 8888887642 122334668899999999876654 3578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++.+.|
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999888999999999964 4667899999994 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=357.77 Aligned_cols=199 Identities=23% Similarity=0.385 Sum_probs=170.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|++|++||.+||+|+||||||||+++|.|... .+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 4679999999999999999999999999999999999652 58999999998863 478899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|+||||.... ..+ ++++.++++..+|.+ -.|+.+|. ...+||||||||++|||||+++|+||
T Consensus 1307 TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1307 TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999995421 122 345667777777643 35666763 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|||+++|+++. ...||+|++|++|++++.|+++++++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999865 47999999999753 45699999999999999999999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=280.14 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=180.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEcc-CCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q-~~~~~~~lTv 83 (583)
....+|+||||++++||.+||+|+||||||||||+|+|.. +|++|+|.++|+... +.. .-.+-|.+|.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--~Pt~G~v~v~G~v~~---------li~lg~Gf~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--KPTSGKVKVTGKVAP---------LIELGAGFDPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--CCCCceEEEcceEeh---------hhhcccCCCcccch
Confidence 4567999999999999999999999999999999999965 478999999986421 111 1245577999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+.+.+. .+++++.+++++++++.-+|.+..|. +++++|.||+-|+++|.+...+|+||++||-.+--
T Consensus 107 reNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~-----PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 107 RENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhC-----chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99999876653 46789999999999999999988886 46899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 227 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 227 (583)
|+.-+++..+.++++.++++|||+++|++. .+.++||++++|++|++.+.|+++++.++|+..
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 999999999999999888999999999965 589999999999999999999999999998764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=325.37 Aligned_cols=192 Identities=24% Similarity=0.395 Sum_probs=158.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +++|+|.+++. ..+||++|+. .+++.+||
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEeCchhhcCCCCCH
Confidence 44679999999999999999999999999999999999653 67899999542 2599999996 78889999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+|++.+...... .... +..+.++++.+|+.+ ..++ .+.+||||||||++||++|+.+|++|+|||||+|
T Consensus 406 ~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 406 WEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999988643211 1111 223457899999964 3444 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEE-EEcChhh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 219 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 219 (583)
||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++ |++. +.|+.++
T Consensus 476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 476 LDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred CCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 99999999999999873 4 8999999965 57789999999986 7776 5666544
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=277.08 Aligned_cols=203 Identities=28% Similarity=0.407 Sum_probs=167.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCC--CCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDD--VLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~--~~~ 78 (583)
.++++|+++|++|+.|+++.|+|.||||||||+|+|+|.+. +++|+|.++|.++++. ....++-|+||+ ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46889999999999999999999999999999999999764 6899999999998752 234578899997 469
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.||+.||+..+..-...+.++. ....+...+-++.+ ||++..++.+| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764322222222 23333344455554 66777777654 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+|||-|++|||.++..+++.-.++.++ +.|.+|+||... +..++-+|.++|++|+||..-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998754 779999999965 567899999999999999754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.53 Aligned_cols=183 Identities=31% Similarity=0.372 Sum_probs=158.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.++ ..++|++|+..+.+.+||+|++.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe---------eeEEEecccccCCCCCcHHHHHH
Confidence 5899999999999999999999999999999999753 578999886 25999999988888999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+.... ... ...++++++.+||.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 423 ~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 423 SITDD-----LGS---SYYKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred HHhhh-----cCh---HHHHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 75321 111 2346789999999876665 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
..+.+.|++++++ |+|||++|||+. .+..+||++++|+ |++...|..
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999874 899999999965 5778899999996 588777763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.57 Aligned_cols=192 Identities=27% Similarity=0.416 Sum_probs=157.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++. ..+||++|+. .+++.+||
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc-------eEEEEEeCCccccCCCCcH
Confidence 34679999999999999999999999999999999999653 57899999542 2599999996 47888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.|++.+..... ..... +.+++++++.+|+.+ ..++ .+..|||||||||+||++|+.+|++|+|||||+|
T Consensus 404 ~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 404 WEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 99998864221 11111 223567899999964 3444 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEE-EEcChhh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 219 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 219 (583)
||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus 474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 474 LDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred CCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999999873 4 8999999965 57788999999986 5776 5566544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=340.39 Aligned_cols=207 Identities=27% Similarity=0.481 Sum_probs=190.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCCCCCH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++++|+.|++||+.|++|+|||||||++|+|+|.. ++++|+++++|+++.. +.++.+||+||+|.+++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 899999999999999999999999999999999965 4689999999998753 256789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|++.+.++++ +++..+.++.++..++.+||.+.+++. ++.+|||+|||+++|.|++.+|++++|||||+|+
T Consensus 658 rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~-----~~~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQ-----VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccc-----hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999887 456677778899999999999998875 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
||.+++.+.++++++.++|+.||.|||. .+|...+|||+.+|.+|++.-.|+++++...|..
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999999988899999999 4678899999999999999999999999988764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=324.03 Aligned_cols=191 Identities=29% Similarity=0.462 Sum_probs=159.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC--CCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--VLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~--~~~~~lT 82 (583)
+++.+|+|+|++|++|++++|+||||||||||||+|+|.. ++++|+|.+++. ..+||++|+. .+.+..|
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL--APVSGEIGLAKG-------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCC-------EEEEEecCcchhhCCccch
Confidence 4567999999999999999999999999999999999965 367899999742 2699999974 3556678
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+.+++.- .. .....+++.++++.+++.. ..++ .+..|||||||||+||++|+.+|++|+|||||+
T Consensus 394 ~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 394 PLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTE-----ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred HHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 8877531 11 1123456889999999963 4554 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
|||+.+...+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 460 ~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 460 HLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999987 34 9999999964 577899999999999997 8899887643
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=272.94 Aligned_cols=147 Identities=27% Similarity=0.425 Sum_probs=129.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+++++ +++++||+++|+||||||||||+|+|+|... +++|+|.++|.+ ++|++|+..
T Consensus 10 ~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~~~~q~~~------- 71 (177)
T cd03222 10 YGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PVYKPQYID------- 71 (177)
T ss_pred ECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EEEEcccCC-------
Confidence 3567789984 9999999999999999999999999999653 678999999853 788888532
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
||||||||++||++|+.+|++++|||||+||
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhhcCeEEEEcCCeEEEE--cChh
Q 007952 164 DSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKAS 218 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 218 (583)
|+.++..+.+.++++++++ .|||++||++. .+.+.||++++|+++-.++. |+|.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999998775 89999999964 46678999999998766654 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=261.99 Aligned_cols=133 Identities=36% Similarity=0.588 Sum_probs=122.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+ +.++|++|
T Consensus 12 ~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~~------------ 70 (144)
T cd03221 12 GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------VKIGYFEQ------------ 70 (144)
T ss_pred CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------EEEEEEcc------------
Confidence 4579999999999999999999999999999999999653 67999999984 46899998
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
||+||+||++|||+|+.+|+++++||||+|||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++..+.+.|+++ ++||++++|++. ++.+.||++++|++||
T Consensus 104 ~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999987 479999999965 5678899999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=347.38 Aligned_cols=192 Identities=26% Similarity=0.424 Sum_probs=159.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++++|+|+|+++++||.++|+||||||||||+++|.|... +.+|.+. ..++.++||+|++.+++. |++|
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV--------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE--------EecCcEEEEcCccccccc-cHHH
Confidence 4679999999999999999999999999999999999653 4566552 346789999999999975 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
||.|+. + .++ ++.+++++..+| .+-.+|.+|.+ ..+||||||||++||||+.++|+|++|||
T Consensus 698 NI~fg~----~--~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 698 NILFGS----D--FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred HhhcCC----c--cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999863 1 222 334455555444 34456888754 66899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+||+.++.++++. ++.. .+++|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 767 ptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 767 PLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999765 5543 35899999999975 357899999999999999999998764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.77 Aligned_cols=193 Identities=26% Similarity=0.442 Sum_probs=158.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++++|+|+|++|++|++++|+||||||||||||+|+|.. ++++|+|.+ |.++ .+||++|+. .+++.+||
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL--QADSGRIHC-GTKL------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEE-CCCc------EEEEEeCcccccCCCCCH
Confidence 4567999999999999999999999999999999999965 367899998 4332 599999985 58899999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.|++.+.... . ... ....++.++++.+++. +..++ .++.|||||||||+||++|+.+|++|||||||+|
T Consensus 401 ~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 401 MDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMT-----PVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred HHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 9999875321 0 011 1234578889999986 34454 3579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc-CCeEE-EEcChhhH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv-~~G~~~~~ 220 (583)
||+.+...+.+.|+++ +.|||++|||.. .+.++||++++++ +|++. |.|+.++-
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999876 459999999964 5778999999997 79875 45665553
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=346.89 Aligned_cols=191 Identities=26% Similarity=0.436 Sum_probs=160.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc-cEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~-G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++++|+|+|+++++||.++|+||||||||||+++|.|... +.+ |+|.+ ++.|+||+|++.+++. |++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------cCeEEEEcCccccCCC-CHH
Confidence 4679999999999999999999999999999999999653 567 89974 4579999999999975 999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|||.|+.. .+ +++.+++++..+|. +-.+|.+|.+ ..+||||||||++||||+..+|+|++||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLD 765 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence 99998631 12 33455566655553 3457788754 5689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+||+.+++++++ .++.+. +|+|+|++||++. ..+.+|+|++|++|++++.|+.+++.+
T Consensus 766 EptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 766 DPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999998875 566553 5899999999974 467899999999999999999998753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=318.06 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=154.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+|+|+||+|++|+++||+||||||||||||+|+|... +++|+|.++|.. .++|++|+...+ ..|+
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-------~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-------QLAWVNQETPAL-PQPA 80 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC-------EEEEEecCCCCC-CCCH
Confidence 456789999999999999999999999999999999999653 679999998742 388998865333 2465
Q ss_pred HHHHHHHH--------H---------------cCC-CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHH
Q 007952 84 KETLTYAA--------L---------------LRL-PNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGER 138 (583)
Q Consensus 84 ~e~l~~~~--------~---------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGer 138 (583)
.+++.-.. . +.. .......+.+++++++++.+|+. +..+. .+..||||||
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----~~~~LSgGer 155 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER-----PVSDFSGGWR 155 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC-----chhhcCHHHH
Confidence 55442110 0 000 00000112345788999999996 34554 3568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcCh
Q 007952 139 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKA 217 (583)
Q Consensus 139 qRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~ 217 (583)
|||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.+.||++++|++|+++ |.|+.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCH
Confidence 9999999999999999999999999999999999999875 569999999964 577899999999999986 67776
Q ss_pred hhH
Q 007952 218 SEA 220 (583)
Q Consensus 218 ~~~ 220 (583)
+..
T Consensus 232 ~~~ 234 (638)
T PRK10636 232 SSF 234 (638)
T ss_pred HHH
Confidence 654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=256.73 Aligned_cols=206 Identities=23% Similarity=0.480 Sum_probs=180.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---c-ccccEEEEccCC--CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S-LKSKIGFVTQDD--VLFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~-~~~~i~yv~Q~~--~~~~ 79 (583)
...+++.|||++++|+.+||+|.||||||||.|+|+|.. +|++|+|.+||+++.- . ..+.|-+++||+ .+.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi--~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc--CCCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 346789999999999999999999999999999999965 4689999999998742 2 236699999997 4788
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+.+.+-|.... ++...++.+++++++.+.++.+||-. .++ -+++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 888888887765 44556788889999999999999864 333 3578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
...+||...+.+++++.-+|.++ |.+-|.++.+.. .+..+.|+|++|++|++++.|++.+++
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999865 999999998865 588899999999999999999999875
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.30 Aligned_cols=186 Identities=21% Similarity=0.369 Sum_probs=151.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.+++ ++.++||+|++.+++. |++|
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHH
Confidence 457999999999999999999999999999999999965 35789998864 4679999999998887 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.++....... .....+++++++++.+++.+..++..| ......||||||||++|||+|+++|++++|||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998753211000 001123457788999999765543221 11346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|||+.++..+.+.+++ .|+|+|+++|+++. .+.||++++|++
T Consensus 612 ~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 9999999999998876 38999999999753 578999999963
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=253.23 Aligned_cols=180 Identities=32% Similarity=0.513 Sum_probs=157.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|-|+|++|.+||++-||||||||||||+..+.|-+... ..+|++++|++.++. ..+|++|..+||+.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4567899999999999999999999999999999999976432 478999999998763 4578899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+|.|||.|+ +|.++..+.+++.++..+++.||....+. .+.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 999999986 45555566777788999999999877664 478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHHCCcEEEEEecCCC
Q 007952 162 GLDSTTALRIVQMLQD-IAEAGKTVVTTIHQPS 193 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~-l~~~g~tii~~~H~~~ 193 (583)
.||..-+.++.+..-. +...|...+.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999888755 4456999999999954
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=295.26 Aligned_cols=206 Identities=35% Similarity=0.546 Sum_probs=173.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+.+++|+++|+++++|+.+|++||||+||||++++|-... + ..+|.|.+||+++.. .+|+-||.||||..+|.
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-D-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-C-CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 45689999999999999999999999999999999999644 3 568999999998753 57889999999999997
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+ |...|+.|+. | ..+.++..+. ..+.++. +.+-.++.+|.+ .-.|||||||||+|||+++.+|+||
T Consensus 351 D-ti~yni~ygr----~-~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger-glklSggekqrvaiar~ilk~p~il 421 (497)
T COG5265 351 D-TIAYNIKYGR----P-DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER-GLKLSGGEKQRVAIARTILKNPPIL 421 (497)
T ss_pred h-hHHHHHhccC----c-cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh-eeeccCchHHHHHHHHHHhcCCCEE
Confidence 6 9999998862 1 2344444332 2333443 466778888854 3459999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||.||+||..+.+.|...|++.+ .|+|.+++-|..+. + --+|+|++|++|+|++.|+.++++..
T Consensus 422 ~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 422 ILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999987 58999999999765 4 35899999999999999999998763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.31 Aligned_cols=192 Identities=21% Similarity=0.373 Sum_probs=154.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+||+|++|++++|+||||||||||||+|+|... +.+|+|.+++. .++||++|+. .+.+++.+
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~ 589 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-------VRMAVFSQHH--VDGLDLSS 589 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc-------eeEEEEeccc--cccCCcch
Confidence 3469999999999999999999999999999999999653 67899998752 4699999985 34556666
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
+.........+. .. ++++.++++.+|+.+ ..+. .+..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 590 ~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 590 NPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred hHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 643321111111 11 345788999999973 3443 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
+.+...+++.|++. .| |||++|||+. .+.+.||++++|++|+++ +.|+.++..+
T Consensus 660 ~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 660 LDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999998888765 34 9999999965 577889999999999998 7888776543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=258.55 Aligned_cols=178 Identities=25% Similarity=0.430 Sum_probs=157.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc---ccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~---~~~~i~yv~Q~~~~~~~ 80 (583)
.++..++.++||++.+||++-|.||||||||||||+|+|... |.+|+|.++|.++... .++.+-|+-.++.+=+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 467889999999999999999999999999999999999764 6799999999988643 44678899999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|||.|||.|....... ...+.+.+.++.+||....|.. +.+||-||||||+|||-+++.+++.+||||+
T Consensus 90 LTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp-----~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccc-----hhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765432 1234578899999999988875 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
++||......+-..+..-+.+|-.||.+||||..
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999988889999999999865
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=312.59 Aligned_cols=197 Identities=26% Similarity=0.406 Sum_probs=153.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+|+|+||++++|++++|+||||||||||||+|+|.. ++++|+|.++|.. .++|++|++......+|
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~--~p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV--LLDDGRIIYEQDL-------IVARLQQDPPRNVEGTV 83 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEeCCCC-------EEEEeccCCCCCCCCCH
Confidence 34578999999999999999999999999999999999965 3678999998732 26777776543333466
Q ss_pred HHHHHHHH------------------------------HcC--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCc
Q 007952 84 KETLTYAA------------------------------LLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 84 ~e~l~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
.+++..+. .+. .. .....+.+++++++++.+|+.. ++ .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~~-----~~~ 155 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--DA-----ALS 155 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--CC-----chh
Confidence 65542110 000 00 0001123456889999999963 33 467
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++|||+. .+.+.||+|+.|++|++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLDRGKL 231 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999999999999873 59999999965 47788999999999999
Q ss_pred E-EEcChhhHH
Q 007952 212 L-YFGKASEAM 221 (583)
Q Consensus 212 v-~~G~~~~~~ 221 (583)
+ +.|+.++..
T Consensus 232 ~~~~g~~~~~~ 242 (635)
T PRK11147 232 VSYPGNYDQYL 242 (635)
T ss_pred EEecCCHHHHH
Confidence 7 568776543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=310.67 Aligned_cols=181 Identities=29% Similarity=0.418 Sum_probs=151.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-----------ECCccCCcc------ccccEE
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPYSKS------LKSKIG 69 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-----------~~g~~~~~~------~~~~i~ 69 (583)
+.+|++++ .+++||+++|+||||||||||+|+|+|.+. +++|+|. ++|+++... .+.+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 36999999 999999999999999999999999999653 5789997 899876421 123466
Q ss_pred EEccCCCCCCC---CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH
Q 007952 70 FVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 70 yv~Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
+.+|.....|. .||+|++... +..++++++++.+||++..++. +.+||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----ISELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHH
Confidence 66665444333 3999998631 1235688999999998776654 56999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+.+++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 999999999965 577899999999763
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=258.15 Aligned_cols=143 Identities=39% Similarity=0.746 Sum_probs=128.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+++++|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 4579999999999999999999999999999999999753 578999999987643 23466888888
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|||||+||++||++++.+|++++|||||+
T Consensus 81 ---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||..++..+.+.+++++++++|+++++|++. ++...||+++++++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999999999877899999999965 4667789999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=333.36 Aligned_cols=192 Identities=27% Similarity=0.440 Sum_probs=156.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 569999999999999999999999999999999999763 6789999987 49999999999885 99999
Q ss_pred HHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+.|+.. ...+..++. .++.++.+ .+..+|.+|. ....||||||||++||||++.+|++++|||||+
T Consensus 507 I~~g~~------~~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLS------YDEYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhccc------cchHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998632 111111111 12222222 2223455654 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++.++++. ++++. +|+|+|++||++.. + +.||+|++|++|+++..|+++++.+
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999984 66665 48999999999754 4 5699999999999999999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=336.05 Aligned_cols=195 Identities=23% Similarity=0.389 Sum_probs=157.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++| .++||+|++.+++ .||+||
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~eN 718 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---------SVAYVPQQAWIQN-DSLREN 718 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---------EEEEEcCCccccC-CcHHHH
Confidence 579999999999999999999999999999999999653 5789999987 4999999998875 699999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAI--DVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+.|+.. .+.++.++.++ ++.+.++. .+-.+|.+|. ...+||||||||++||||+..+|++++||||||+|
T Consensus 719 I~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 719 ILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred hhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 998521 12222222111 11233332 2233566654 46789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH--HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~--~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+.++..+++.+.+.. .+|+|+|++||++.. .+.+|+|++|++|++++.|+++++.+
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999997542 358999999999753 45699999999999999999988754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=331.69 Aligned_cols=192 Identities=28% Similarity=0.409 Sum_probs=153.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++ +.++||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4679999999999999999999999999999999999653 578999863 46999999998875 69999
Q ss_pred HHHHHHHcCCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.|... ...+..+ ..+++.++.+ |+ ++.+| +...+||||||||++|||||+.+|++++|||
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9988421 1111111 1123334444 33 33444 3467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||++||+.++..+++.+.....+|+|+|++||++.. .+.+|+|++|++|++++.|+.++..+
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999987543223358999999999753 46799999999999999999988653
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=247.24 Aligned_cols=207 Identities=30% Similarity=0.486 Sum_probs=162.8
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCC-----c-----cccccEE
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS-----K-----SLKSKIG 69 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~-----~-----~~~~~i~ 69 (583)
.++...-.+||||++.|||+++|+|+|||||||||++|++++. |+.|+|.|.-. +.. + -.|..-|
T Consensus 15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 3456677899999999999999999999999999999999875 67899998653 221 1 1345579
Q ss_pred EEccCCC--CCCCC----CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHH
Q 007952 70 FVTQDDV--LFPHL----TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 143 (583)
Q Consensus 70 yv~Q~~~--~~~~l----Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~i 143 (583)
+|.|++. +-... .+.|-++-.. .| ......+.+.++++++.++..+ + +..++..|||++||+.|
T Consensus 93 ~VhQnP~DGLRm~VSAG~NiGERlma~G-~R-----HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQi 162 (258)
T COG4107 93 FVHQNPRDGLRMQVSAGGNIGERLMAIG-AR-----HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQI 162 (258)
T ss_pred eeecCccccceeeeccCCccchhHHhhh-hh-----hhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHH
Confidence 9999863 32222 3444443211 11 1234556678899998886422 2 34689999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||.|++.|++.|+||||-|||...+..++++++.+..+ |.+++++|||.. .+--++|+.++|++|++++.|-.+.+++
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEecccccccccc
Confidence 99999999999999999999999999999999999865 999999999964 2444689999999999999999888753
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=261.60 Aligned_cols=192 Identities=23% Similarity=0.369 Sum_probs=137.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhCCCCCCCcccEEEEC------------Cc-cCC-cccc-cc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DH-PYS-KSLK-SK 67 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~g~~~~~~~~G~I~~~------------g~-~~~-~~~~-~~ 67 (583)
..+..+|+|+|+++++||+++|+||||||||||+ ..+.. .|++.+. .. ... ...+ ..
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 3456799999999999999999999999999996 44431 1221110 00 000 0111 22
Q ss_pred EEEEccCCC--CCCCCCHH---HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHH
Q 007952 68 IGFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 141 (583)
Q Consensus 68 i~yv~Q~~~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv 141 (583)
.++..|++. ..|..+|. |...+...+. ..+...++ .+.++.++|.+ ..+. .+.+||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 344444432 24444554 3222221111 11222233 56899999975 3443 4679999999999
Q ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEE
Q 007952 142 CIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLY 213 (583)
Q Consensus 142 ~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~ 213 (583)
+||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++||++. ++ +.||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 599999999999999999999999999888999999999975 34 689999999 9999998
Q ss_pred Ec
Q 007952 214 FG 215 (583)
Q Consensus 214 ~G 215 (583)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 86
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=291.45 Aligned_cols=197 Identities=31% Similarity=0.471 Sum_probs=160.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|... +++|+|...+. .+++|++|+....+..||
T Consensus 13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------ceEEEeCCCCCcCCCccH
Confidence 467899999999999999999999999999999999999763 67899976532 359999999999999999
Q ss_pred HHHHHHHHHc-------------CCCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH
Q 007952 84 KETLTYAALL-------------RLPNT--------------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 136 (583)
Q Consensus 84 ~e~l~~~~~~-------------~~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG 136 (583)
.+.+.-+..- .++.. ...-+.+.++..++..+|+.+. ++. +.+||||
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~-----~~~LSGG 157 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP-----VSSLSGG 157 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc-----hhhcCHH
Confidence 9988754310 00000 0001123567788888888875 543 5699999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEc
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFG 215 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G 215 (583)
||.||++|++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|++||| ..-+-+.|++|+-++.|++ .|.|
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999999999999864 46 99999999 5667789999999999976 4667
Q ss_pred Chhh
Q 007952 216 KASE 219 (583)
Q Consensus 216 ~~~~ 219 (583)
..+.
T Consensus 234 ny~~ 237 (530)
T COG0488 234 NYSS 237 (530)
T ss_pred CHHH
Confidence 6554
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=261.80 Aligned_cols=196 Identities=26% Similarity=0.400 Sum_probs=154.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh--------CCCCC-C----------CcccEEEECCccCCccccc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--------GRLME-P----------TVGGSITYNDHPYSKSLKS 66 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~--------g~~~~-~----------~~~G~I~~~g~~~~~~~~~ 66 (583)
...-|+|+|.+|+.|++++|.|+||||||||++.+. +.... + ...--|.++..|+.+..|.
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 456799999999999999999999999999998552 11000 0 0112467777776421110
Q ss_pred ------------------------------cEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 007952 67 ------------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116 (583)
Q Consensus 67 ------------------------------~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 116 (583)
.+.|..++...+..+||.|++.|....+ ..+++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence 1456666666677899999999875431 1245678999999
Q ss_pred CCc-cccccccCccCcccChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 117 LER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 117 L~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
|.+ ..+. .+.+||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 158 L~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 158 LGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred CchhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 976 2343 4679999999999999999996 799999999999999999999999999998899999999997
Q ss_pred ChHHHhhcCeEEEE------cCCeEEEEcCh
Q 007952 193 SSRLFHKFDKLILL------GKGSLLYFGKA 217 (583)
Q Consensus 193 ~~~i~~~~D~v~~L------~~G~iv~~G~~ 217 (583)
.. + +.+|+++.| ++|++++.|++
T Consensus 233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 53 4 679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=306.78 Aligned_cols=192 Identities=27% Similarity=0.441 Sum_probs=163.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
..+.|+|||++|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|. ++||+|++-++.. ||||
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe---------EEEeccccHhhCC-cHHH
Confidence 4458999999999999999999999999999999999774 57899999875 9999999998875 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.|+..+ .+++.+++++...|+ +.-.|.+| +..-+||||||||+++|||+-+|.+|++||.
T Consensus 601 NILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 601 NILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred hhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99997422 234555666655554 33456676 4567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|.|++|++..+++.+..-+-.-++||+|.+|||. +..+.+|+|++|++|+|+..|+.+|+.+
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999876665445689999999985 3578899999999999999999999873
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=300.98 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=144.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccC-----Cc-------------ccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-----SK-------------SLK 65 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~-----~~-------------~~~ 65 (583)
+++.+|+|+|++|++|+.+||+||||||||||||+|+|+... .+.+|+|.+.++.. +. ..+
T Consensus 188 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~ 267 (718)
T PLN03073 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLE 267 (718)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHH
Confidence 456799999999999999999999999999999999996421 24567776543321 10 012
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH-------------------HHHHHHHHHHHHcCCC-ccccccc
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ-------------------QKEKRAIDVINELGLE-RCQDTMI 125 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-------------------~~~~~v~~~l~~lgL~-~~~~~~i 125 (583)
+.++|++|++.+... ++.++...... ...+.+ ..++++.++++.+|+. +..++
T Consensus 268 ~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~-- 340 (718)
T PLN03073 268 EEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK-- 340 (718)
T ss_pred HHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC--
Confidence 224556654332111 11111100000 001111 2344566777778875 23333
Q ss_pred cCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 126 g~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+.+|||||||||+||++|+.+|++|+|||||++||+.+...+.+.|+++ +.|||++||+.. .+.+.||++++
T Consensus 341 ---~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~ 413 (718)
T PLN03073 341 ---ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILH 413 (718)
T ss_pred ---chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999999886 679999999954 57788999999
Q ss_pred EcCCeEE-EEcChhhH
Q 007952 206 LGKGSLL-YFGKASEA 220 (583)
Q Consensus 206 L~~G~iv-~~G~~~~~ 220 (583)
|++|+++ |.|+.++.
T Consensus 414 l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 414 LHGQKLVTYKGDYDTF 429 (718)
T ss_pred EECCEEEEeCCCHHHH
Confidence 9999996 77876654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=241.50 Aligned_cols=133 Identities=44% Similarity=0.761 Sum_probs=118.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999653 578999999998864 35678999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+ ..+++++++++.+++.+..++.++. ...+||||||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 2345688999999998877777653 348999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=239.35 Aligned_cols=192 Identities=28% Similarity=0.425 Sum_probs=160.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc--CC------c----cccccEEEEccC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS------K----SLKSKIGFVTQD 74 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~--~~------~----~~~~~i~yv~Q~ 74 (583)
-++++|+||+++.||++++=||||||||||||+|-|.. .+++|+|++.-.. ++ . -.++.||||.|-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY--~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY--LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc--CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 47899999999999999999999999999999999965 3689999985432 11 1 135669999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
-...|..+..|-+.-.+.- ...+.+....++.+++.++++.+..-.+ .+.+.||||+|||.|||.++.|-+||
T Consensus 102 LRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pIL 174 (235)
T COG4778 102 LRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPIL 174 (235)
T ss_pred HHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceE
Confidence 8888888777766554432 3467778888899999999998765543 47899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+|||||+.||..++.-++++|++-+.+|..+|=+-|| .+.-...+||++-+..
T Consensus 175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999988889999999999 3333457999988754
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=302.96 Aligned_cols=200 Identities=25% Similarity=0.426 Sum_probs=166.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
...+|||||++|+|||.+||+|+.|||||||+++|-+.. + +.+|+|.+||.++.+ .+|++++.+||||.+|..
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG- 1228 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-E-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG- 1228 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-C-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-
Confidence 457999999999999999999999999999999999754 3 478999999999874 689999999999999987
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|||+||.=. ...++ +.+.+.|+..+|.+ ..|+.+. +...++|-||||.+++||||+++++||
T Consensus 1229 TvR~NLDPf------~e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1229 TVRFNLDPF------DEYSD----DEIWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred ccccccCcc------cccCH----HHHHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEE
Confidence 999998511 11233 33444555544432 2344442 335789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||.|++.|+.+-..|.+.||+-= +++|||.+-|+.+. +.+ +|||++|++|+++++|+|.++++
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999853 37999999999875 544 89999999999999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=264.73 Aligned_cols=203 Identities=24% Similarity=0.446 Sum_probs=172.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccC---CCCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQD---DVLFPH 80 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~---~~~~~~ 80 (583)
.++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++.. ..+..++|||.| +.++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~--~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC--cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 478999999999999999999999999999999943 4568999999998742 346689999998 568999
Q ss_pred CCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 81 LTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
++|+||+.++...+... -++....++.+++..+.+++....- +..+..||||.+|||.||+.|..+|++|+|||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~----~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc----cchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 99999999883322221 2455666677899999998863211 23567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
||.|.|..+..+|.+++++++++|++||++|.+. +|+..+||||++|++|+++..=+.+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999995 5799999999999999998754443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-30 Score=236.45 Aligned_cols=197 Identities=28% Similarity=0.466 Sum_probs=168.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+-|-.+|+++..||++-++|||||||||||-.++|.. +-+|+|.++|+++.. ++.+.-+|..|+..-...|.|
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 3467889999999999999999999999999999965 458999999999853 455667899998776667889
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh-----CC--CEEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-----NP--SLLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~-----~p--~illL 156 (583)
.+++... . +.++....++++...++|.+.... .+.+|||||.|||-+|...+. || ++|+|
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 9888653 2 345666778889999999865543 467999999999999987763 44 69999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||.++||...+..+-..|.+++.+|.+||++.||.+. ..+-+|++.+|+.|++...|..+|++
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999999876 56789999999999999999999875
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=242.21 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-------CCcccEEEECCccCCc-cccccEEEEccCCCCCCCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-------~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++++++++| +++|+||||||||||+++|+|.... ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986421 1224578888876533 2357799999998765
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 158 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDE 158 (583)
|.. . ..++++++++. .+..++ .+..||||||||++||++++ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356667766 333333 46799999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||+|||+.++..+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999875 789999999975 3478999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=261.31 Aligned_cols=190 Identities=28% Similarity=0.455 Sum_probs=154.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv~ 84 (583)
.+.+++++||.+.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-. -++||..|+. .+.+..|+.
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET-------VKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-------eEEEEEEehhhhcCccCcHH
Confidence 3689999999999999999999999999999999999653 45899977532 3599999986 445888999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|++.-.. |. ..+..+...|..++++...- ...++.||||||.|+.+|+.++.+|.+|+|||||+.||
T Consensus 405 d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 405 EELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred HHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 9886431 11 11566888999999974322 13467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE-cChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~~~ 222 (583)
..+...+.+.|.+. .-|||++|||. .-+-+.+++++.+.+ ++..+ |..++..+
T Consensus 472 i~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 472 IESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999876 45999999995 457889999999988 55444 77666443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=240.63 Aligned_cols=189 Identities=16% Similarity=0.290 Sum_probs=133.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--------------CCCccc--------EEEECCcc-
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------EPTVGG--------SITYNDHP- 59 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--------------~~~~~G--------~I~~~g~~- 59 (583)
+.+++.++++++ |++++|+||||||||||+++|++.+. ..+.+| +|.+++.+
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 455677788876 78999999999999999999983210 011234 55665532
Q ss_pred ---CC---ccccccEEEEccCCCCCC-CCCHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCc
Q 007952 60 ---YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 60 ---~~---~~~~~~i~yv~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
.. ...++.++|++|+..+++ ..|..|...+............ .....++ .+.+++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccc-----ccc
Confidence 11 124667999999887776 4677776666554432211000 0001122 233444433333 457
Q ss_pred ccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 132 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+.||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 899999999999999974 5899999999999999999999999999865 78889888884 4678999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-29 Score=244.68 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=136.0
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++.+++++++ ++++|+||||||||||+++|.- ++|.+.....++++++++|+..+++.+|
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence 4567789999887 7999999999999999999982 1222221122356899999998999999
Q ss_pred HHHHHHHHHHcCCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh----CC
Q 007952 83 VKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NP 151 (583)
Q Consensus 83 v~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~----~p 151 (583)
++|.+.+....... .....+.... ...++++.++|.+..++. ++.+|+|||||++||++++. +|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 99887765432100 0011111010 124566777887766654 46899999999999999974 57
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++++||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|+.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999999864 67888888985 57889999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=240.44 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=137.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc-cCCc------cccccEEEEccCC---------CCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFP 79 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~-~~~~------~~~~~i~yv~Q~~---------~~~~ 79 (583)
.+.+| +++|+||||||||||+++|++.+. +...|++...|. ++-. ..+.++++++|++ .+.|
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 44444 999999999999999999999663 223567877775 3211 1234799999985 3466
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCccCcccChHHHHHHHHH
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIG 144 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~LSgGerqRv~ia 144 (583)
.+||.+++......+...+ .++...+++.+.++.+|+...... ..-+..+.+||||||||++||
T Consensus 100 ~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 100 EITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred eEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 8899988865422110000 122334678899999998611000 011235679999999999999
Q ss_pred HHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 145 NEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 145 ~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|+ .+|+++++||||+|||+.++..+.+.|++++ +|.|||++||++ ++.+.||+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9998 5789999999999999999999999999985 488999999994 5678899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=270.21 Aligned_cols=138 Identities=25% Similarity=0.365 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHH---hCCC
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 152 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~---~~p~ 152 (583)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .+. .+.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999886542111112234455566 58899999764 444 45799999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc------CCeEEEEcChhhHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 222 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 222 (583)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999975 35 8999999996 789999999988753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=224.90 Aligned_cols=166 Identities=17% Similarity=0.267 Sum_probs=126.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHh----CCCCCCCcccEEEECCccCC-ccccccEEEEccCC-----CCCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPH 80 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~----g~~~~~~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~-----~~~~~ 80 (583)
+..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..+++++|++ .....
T Consensus 14 ~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 14 ERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred CceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 4456778888 99999999999999999995 7543 34455542222222 23456799999987 34455
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH------HHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR------v~ia~~L~~~p~il 154 (583)
+|+.|++.+. +.+ .+++.+ + ..++.||+||||| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888887542 111 122333 2 2457899999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 155 lLDEPtsgLD~~~~~-~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
++||||++||+.++. .+.+.|++++++ |.|||++||++. ..+.||+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999999999999999 999999999876 889999999964 4567999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-26 Score=222.88 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=124.6
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC--ccCC-ccccccEEEEccCCCCCCCCCHHHH
Q 007952 11 NGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND--HPYS-KSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 11 ~~vs~~i~-~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g--~~~~-~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
++++|... +|++++|+||||||||||+++|++.+.. +..+....+. ..+. ...+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666543 5889999999999999999999964432 2223333321 1111 234566999999863311 12111
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh----------CCCEEEE
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----------NPSLLFL 156 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~----------~p~illL 156 (583)
. ..+.++..+.+ .++..++.+..+ ..+..||||||||+++|++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222222211 123333433333 3467899999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||||+|||+.+...+.+.|++++++|+|||++||++. .+...+|+++++++|.
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999975 4678899999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=252.11 Aligned_cols=126 Identities=29% Similarity=0.458 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCC---CEEEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 156 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p---~illL 156 (583)
+||.|++.|...++ + ..+..+.++.+||.+ ..+. .+.+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875431 1 123467899999975 2343 45789999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.+...+++.|++++++|.|||+++|++.. + +.+|+++.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4 679999999 6899999999998753
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=231.20 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=177.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-C---c--cccccEEEEccCC---CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S---K--SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~---~--~~~~~i~yv~Q~~---~~ 77 (583)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|+++ . . ..+..++|||+|- .+
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 467999999999999999999999999999999999653 3459999999986 2 1 2346799999985 57
Q ss_pred CCCCCHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 78 FPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+.+|+.||+.+...-+.| ..+...+.++.+.+++++++...... ....+.||||++||+-+||+|..+|++
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCE
Confidence 8899999999876543211 12566778888999999999873322 134689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+..+||.|||..+...|.+.|.+.+++|+.|++++-+. +|++++||+|.+|.+|+++...+++++
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence 999999999999999999999999999999999999996 579999999999999999998888763
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=239.41 Aligned_cols=184 Identities=29% Similarity=0.464 Sum_probs=147.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
++.+..|++.|+.+++||-+.|.||||||||||+|+|+|.-+ --+|+|..- ....+-|+||.+.+... |.
T Consensus 403 p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P-------~~~~~lflpQ~PY~p~G-tL 472 (604)
T COG4178 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMP-------ADSALLFLPQRPYLPQG-TL 472 (604)
T ss_pred CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecC-------CCCceEEecCCCCCCCc-cH
Confidence 445689999999999999999999999999999999999764 335776442 12458899999997766 99
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig-~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
||-+.|.... ... .++.+.++|.++||.+..+..-+ ++.-+.||+|||||+++||.|+++|++++|||.|++
T Consensus 473 re~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 473 REALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred HHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 9999875321 112 34557789999999877665322 223468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
||..++..+.+.+++-. .+.|||.+.|++. +..+.++.+-+.
T Consensus 546 LDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 546 LDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999998743 3899999999975 456666655553
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=243.15 Aligned_cols=125 Identities=27% Similarity=0.459 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHh---CCCEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~---~p~ill 155 (583)
++||.|.+.|...+. . ..+..++++.+||... .+ +.+++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888888765431 0 1234578899999752 33 3467999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999975 34 679999999 79999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=207.34 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=169.7
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCC---c-c----ccccEEEE
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS---K-S----LKSKIGFV 71 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~---~-~----~~~~i~yv 71 (583)
|+.+..++++++|++++.||+-+++|+||||||-.-|+|+|..... .+.-...+++.++- . + ..+.|+++
T Consensus 15 TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMI 94 (330)
T COG4170 15 TSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred cCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhh
Confidence 6778889999999999999999999999999999999999965321 12234455555431 1 1 22458899
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCC-C--CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNT-L--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
+|++. +-|.-+|...|.-..-...-++ . .-..+++++-++|..+|+.+..|-. ..++.+|.-||-|+|+||.|
T Consensus 95 FQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 95 FQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehh
Confidence 99974 4555455433321110000000 0 1124567788999999999877643 46789999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++.+|++|+.||||+.+|+.++.+|.++|.++.. +|.||+.++||.. .+-+.||++-+|.-|+-++.++.+++++
T Consensus 173 ~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999975 5899999999965 4889999999999999999999998874
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-25 Score=225.73 Aligned_cols=189 Identities=25% Similarity=0.311 Sum_probs=152.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
=+..||++|++||++-|+|.||||||||++.|.|... |.+|+|++||+|++. ++|+-++-|+-|-.+|+.+--.
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 3678999999999999999999999999999999653 679999999999863 4677788888888888753211
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
+.. ...+.++..++.+.|.+...-+-|+-..-.||.|||||+++-.||+-+-+|+++||=-+.-|
T Consensus 416 ------------e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 416 ------------EGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred ------------ccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 111 11244677888887766443332333456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 165 STTALRIVQMLQD-IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 165 ~~~~~~i~~~l~~-l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|.-++.+.+.+-- ++++||||+.+|||- .-+..+||++.+.+|++++.-+
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence 9999999877654 567799999999993 3578899999999999987553
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.56 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=122.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE--CCccCC-----ccccccEEEEccCCCCCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYS-----KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~--~g~~~~-----~~~~~~i~yv~Q~~~~~~~l 81 (583)
-++++++++.+| +.+|+||||||||||+.+|...+ .|+... .|.... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 347888899888 88999999999999999998422 122111 121110 1123457888887665541
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH----HhCCCEEEEe
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLD 157 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L----~~~p~illLD 157 (583)
.. ....+++++++++. .+..++ .+++||+|||||++||+++ +.+|++++||
T Consensus 84 ----------------~~-~~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ----------------PL-CVLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----------------cC-CHHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 01 11123557777766 444443 4679999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~---g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||+|||+.++..+.+.|++++++ ++||++++|++.. +.+ +|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999999998653 3689999999764 544 59999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-24 Score=224.05 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=138.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
...+.+++|+++++.+|+-+||+|+|||||||+|++|.|+..+.|..=.++.-.+++.....+.+-++.+ +.-..
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~-----~~~~e 159 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM-----ETDHE 159 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh-----hhHHH
Confidence 3467899999999999999999999999999999999998754333323333333222111111111110 00011
Q ss_pred HHHHHHHHH-c----------------CCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHH
Q 007952 84 KETLTYAAL-L----------------RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 84 ~e~l~~~~~-~----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+.-+++-+. + .....+..+..+.++.+++..+|.. +..++ .+.++|||+|.|+++||
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-----~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-----KVKDLSGGWRMRAALAR 234 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH-----HhhccCchHHHHHHHHH
Confidence 111111000 0 0001123334455566677766654 33333 46799999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe-EEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 221 (583)
+|..+|++|+|||||+|||..+..-+-+.|.+..+ + ++++++|.- .-+-..|.+|+-|.+++ +.|.|+.+..+
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999999998877532 2 899999974 45778999999999998 67788877644
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=208.00 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=120.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-C-C---------ccccccEEEEccCCCC-CCCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDVL-FPHLT 82 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~-~---------~~~~~~i~yv~Q~~~~-~~~lT 82 (583)
+...++ +++|+|||||||||||++|++.+. +..|++..++.. + . ....-.+.|..|++.. .-..+
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~--~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLG--EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhC--CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 333444 999999999999999999998653 224555443321 0 0 0112224444444321 00111
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccC--------ccCcccChHHHHHHHHHH
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM---------IGG--------SFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------ig~--------~~~~~LSgGerqRv~ia~ 145 (583)
+++... ..+... +....+.++++++.+|+....+.. +.+ ..+..||||||||++||+
T Consensus 95 ~~~~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 111100 001111 011233456888889986322111 111 224789999999999999
Q ss_pred HHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 146 EIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 146 ~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++.+ |+++++||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99875 899999999999999999999999999987799999999994 45788999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=208.58 Aligned_cols=170 Identities=28% Similarity=0.378 Sum_probs=134.3
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
=.+++..||+++++||||-||||+.++|+|.+. |++|+ . ..-+++|-||--.--.+.||++.|.-...
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----C------ccceEeecceeecCCCCCcHHHHHHHhhh
Confidence 345667788999999999999999999999764 56775 1 12358899997554456799998865433
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 007952 93 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172 (583)
Q Consensus 93 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~ 172 (583)
-+... .-.-.++++-|+|++..+.. +.+|||||.|||+||.+|..++++++||||++-||++.+..+-
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~-----v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERP-----VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhcc-----cccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 12235678888888777764 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 173 QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 173 ~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+.+|++.++ ++|.+++-||... +--+.|++++..
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999864 7899999999653 444678887663
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-23 Score=217.12 Aligned_cols=186 Identities=23% Similarity=0.346 Sum_probs=144.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccC--CCCCCCCCHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD--DVLFPHLTVKE 85 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~--~~~~~~lTv~e 85 (583)
.++++++|-+..++.++++||||||||||||++.|.+. |..|.|.-.-+ .++++--|+ +.+--+.++-|
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le 474 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLE 474 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc-------ccchhhhhhhHhhcCcchhHHH
Confidence 58889999999999999999999999999999999764 56787754322 234455554 23333567777
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
++.=.. +.+...+.+..++..+||...... ..+++||+|||+||.+|+.++..|.+|+|||||+|||.
T Consensus 475 ~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 475 FMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HHHHhc--------cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 764321 112344567889999999854443 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEcChh
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 218 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 218 (583)
.+...+-+.|.+. .-++|.++||-. -|-+.++++.+..+|.+ .+.|...
T Consensus 543 ~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 543 ETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred hhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 9999988888775 347999999965 47788999999988755 4566544
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=207.08 Aligned_cols=189 Identities=22% Similarity=0.345 Sum_probs=147.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
+..+.+|+|++|++|+-+.|.||||||||+|+|+|+|+- |..+|++.--.+.- -+.+-||||.|.+--. |.||
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW--p~~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW--PSTGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc--ccCCCeEEecccCC----CCceEEecCCCCcccc-chhh
Confidence 566788999999999999999999999999999999965 35678886433221 1458999999987655 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+.|...--. ...+...++++.+.|+.++|.|..+..=| -+....||+||+||+++||-+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988632111 11122234567788888888876553211 123467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||++|......+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999888876 4999999999865 4565688888864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=190.27 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=69.0
Q ss_pred cCcccChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-cEEEEEecCCChHHHhhcC-
Q 007952 129 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 201 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L----~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tii~~~H~~~~~i~~~~D- 201 (583)
.+.+||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4678999999998877554 4799999999999999999999999999999876 5 579999999654 456666
Q ss_pred -eEEEEcCCe
Q 007952 202 -KLILLGKGS 210 (583)
Q Consensus 202 -~v~~L~~G~ 210 (583)
++++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-22 Score=208.96 Aligned_cols=192 Identities=24% Similarity=0.298 Sum_probs=134.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lT 82 (583)
.+.|.+|++-++++..|.-++|+|+||+|||||||+|+. |.| .+.+..++.+. -+++-.. .+..+.+
T Consensus 90 ~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~~g--~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEVRG--DDTEALQSVLESDTE 157 (582)
T ss_pred ecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhheec--cchHHHhhhhhccHH
Confidence 467889999999999999999999999999999999996 111 22222222221 1222221 2223333
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.+.+.--.. +.... +..+...++|..+|.++..-. ..++.||||=|-|+++||||..+|++|+|||||+.
T Consensus 158 ~~dfl~~e~~--l~~~~---~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 158 RLDFLAEEKE--LLAGL---TLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH 228 (582)
T ss_pred HHHHHHhhhh--hhccc---hHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence 3332221100 00111 233444458889998754332 35689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEcChhhH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~ 220 (583)
||..+..-+...|+.. +.|+|+++|| +.-+-..|..|+-+++-|+ .|.|..++.
T Consensus 229 LDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 229 LDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred chhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999998875 4799999999 5556677888888877665 466665543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-21 Score=188.10 Aligned_cols=153 Identities=23% Similarity=0.246 Sum_probs=109.3
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh-CCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 10 LNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 10 L~~vs~~i~~Ge-~~~i~G~nGaGKSTLl~~l~-g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
..++|+++.+|+ +++|.||||||||||||+|+ +... ...|. .+...-...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~------~vp~~~~~~~~~~~~~~~----------- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGL------PIPAAEGSSLPVFENIFA----------- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------CccccccccCcCccEEEE-----------
Confidence 348899999995 89999999999999999998 1100 00110 000000012334333211
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.++.++..+. ....+|+||||++.++++ +.+|+++++|||++|||+..
T Consensus 78 --------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 78 --------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred --------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence 1111111111 235799999999999987 48999999999999999999
Q ss_pred HHHHH-HHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 168 ALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 168 ~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
...+. ..++++++.|.|+|++||++ ++.+.+|++..|++|++.+.+
T Consensus 126 ~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99996 47888887799999999983 577899999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=176.07 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=148.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccC-------
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQD------- 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~------- 74 (583)
.-+++-|+|++++.|.-+.++|.||||||||||+|+|... .-.|.|.++|.+.-. .......|+--+
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ 103 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGI 103 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccccccccCceeEecccccccccc
Confidence 4489999999999999999999999999999999999543 335899999976421 111223333322
Q ss_pred ---CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 75 ---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 75 ---~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
--+-.++++.+.| |+... ... +|-+++++.+++.-. ...+.+|-||||||.|++.|++.-
T Consensus 104 agevplq~D~sae~mi-fgV~g-----~dp----~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 104 AGEVPLQGDISAEHMI-FGVGG-----DDP----ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cccccccccccHHHHH-hhccC-----CCh----hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccce
Confidence 2233356776544 43211 111 334566777766421 234689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++|+|||-|-.||..++.++++.+++-+++ |.||+..||--.. +.....+++.+++|+++-.-+.++..+
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecCCeeeeccccchhhh
Confidence 999999999999999999999999998864 9999999998553 667789999999999998666665544
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=192.16 Aligned_cols=178 Identities=26% Similarity=0.412 Sum_probs=138.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC--CCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--VLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~--~~~~~l 81 (583)
.+.++++++++|-|.-...+||+||||.||||||++|.|.+. |..|+.. +..|-+||+-.|+. .+-..-
T Consensus 597 ~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~R-------KnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 597 PGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELR-------KNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhh-------ccceeeeechhhhhHHhhcccc
Confidence 367889999999999999999999999999999999999774 4567653 33455699988874 455556
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|.-|.|.-.. +++.+ .+...|-.+||...++|. .++.||||||-||++|.--+..|+||||||||+
T Consensus 668 tp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 7777765322 23332 345678899999888885 478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+||..+...+-+.|++. .-.||+++||... +.+.--.+.++.+
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 99999999998888876 3479999999543 3333334555544
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=193.89 Aligned_cols=169 Identities=31% Similarity=0.461 Sum_probs=126.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------------ccc------ccEEEEccC---
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------------SLK------SKIGFVTQD--- 74 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------------~~~------~~i~yv~Q~--- 74 (583)
.++|++++|+||||-||||-+|+|+|.+.+ . =|+ .++.|-.+ .++ -++..-+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~P-N-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKP-N-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcccc-C-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 468999999999999999999999997752 2 232 22222110 000 112222332
Q ss_pred -CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 -DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+..+.. ||.|-|.-. +..-+.+++++.++|++..|.. +.+|||||.||++||.+++++.++
T Consensus 173 iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~-----v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 173 IPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhh-----hhhcCchHHHHHHHHHHHhccCCE
Confidence 223332 677765421 1123578899999999887764 579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++|||||-||...+....+.++++++.+++||++.||+. .+--++|-|.++..
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999999988999999999964 34446888888863
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-22 Score=191.29 Aligned_cols=206 Identities=28% Similarity=0.549 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007952 328 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 405 (583)
Q Consensus 328 ~q~~~l~~R~~~~-~r~~~~~-~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~e 405 (583)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+++ ++.++. ++.|++++.+...++............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999986 6777666 7788999999999999999887 344455 7788888777766555544555778899
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007952 406 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 485 (583)
Q Consensus 406 r~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~ 485 (583)
|..+.||+.++.|++.+|.+||.+.+++..++.++++..+.|++.|++.+ +|+.+++.++++.+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 6677777788888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 007952 486 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 537 (583)
Q Consensus 486 ~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef 537 (583)
+.+.+..+.+++..++++++|.+.| .+|+|++|+.|+||.+|++|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998 799999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=214.24 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=145.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC-----CCCC--CCcccEEEECCccCCc--------------cccc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RLME--PTVGGSITYNDHPYSK--------------SLKS 66 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g-----~~~~--~~~~G~I~~~g~~~~~--------------~~~~ 66 (583)
.=|+|++.+|+-|.+++|.|.||||||||++-..- .+.. ....--|.+|-.|+.+ ..|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 34899999999999999999999999999974431 0000 0122346666655421 0000
Q ss_pred -------------------------------cEEEEccCCCCCC--------------------------------CCCH
Q 007952 67 -------------------------------KIGFVTQDDVLFP--------------------------------HLTV 83 (583)
Q Consensus 67 -------------------------------~i~yv~Q~~~~~~--------------------------------~lTv 83 (583)
.-|++.=+-.++| +|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0122211111111 4678
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC---CCEEEEeCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 160 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~---p~illLDEPt 160 (583)
.|.+.|... ..+-.+.-+.|+++||.... + ++...+|||||.||+-+|.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---L-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---C-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 887777521 11233456788999997532 2 345678999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| +.|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999996 467789999999 3479999999999864
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=193.97 Aligned_cols=128 Identities=28% Similarity=0.483 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC---CEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p---~illL 156 (583)
+|||.|...|.... + .-.+.-+.|.++||.-. ++| +...+|||||.||+-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888888876421 1 12344567888898632 233 457799999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||||+||-.....++++.|.+|.++|.|||++.|+. ++.+.+|.|+-| +.|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999985 467899999999 4579999999999875
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=179.94 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=102.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+++.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 345677776665 79999999999999999999998431 1123444321 136678788999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
++.+... ....+. +++.++++.+++ .+|+++++|||++|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976431 112222 557777776642 69999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCcEEEEEecCCC
Q 007952 166 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 166 ~~~~~i~-~~l~~l~~~g~tii~~~H~~~ 193 (583)
.....+. ..++++.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9998775 478888877999999999974
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=170.16 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.4
Q ss_pred cChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 133 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 133 LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||||||||+++|++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999965
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=190.73 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=143.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+++.+++..++.-.-.+++|+||+||||++|++.|.+. +..|.+.+++ |.+++|-.|...-+-.+.|-+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v- 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV- 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-------cceecchhHhhhhHHHHHhHHH-
Confidence 67888888899889999999999999999999999654 4567766543 5679999998654444455443
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+....+. ..++ +..++-+..+||+.-. ....+.+||||||=||++|.....+|.+|+|||||+.||..+
T Consensus 448 d~~~~~~p--G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 448 DFMEKSFP--GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred HHHHHhCC--CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 33333332 2233 3456678999997421 123367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE-EcCh
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 217 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~-~G~~ 217 (583)
-..+.+.|+.. +-.||++|||. +-+...|+.+.+.++|++.- .|..
T Consensus 518 l~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 518 LGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 99999888876 34799999994 45778999999999999864 3443
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-20 Score=181.20 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=117.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEE-EEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~-yv~Q~~~~~~~lTv 83 (583)
+.+.+.+|++++.++|++++|.||||+|||||+++++- .. .-.++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~~------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-IV------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-HH------------------HHHHhCCCcCcccEEEe----
Confidence 34578999999999999999999999999999999982 10 011222 5555432111
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCC--
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP-- 159 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEP-- 159 (583)
.++++++.+|+++.. .+++|.|+++++.+++++ +.+|++++||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123455566665432 358999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 160 -TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 160 -tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|++||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3345544 48899999996 46789999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-19 Score=182.71 Aligned_cols=186 Identities=26% Similarity=0.424 Sum_probs=140.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC------CCcccEEEECCccCCccccccEEEEccCC-CC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~------~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~ 77 (583)
.+..+|+|+|++++||++++|+|+|||||||||++|.|.... .|++|.|.+--.. ..+.+|.+. .-
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 356799999999999999999999999999999999995321 2456766542211 224455542 22
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|..-|+.|.+.- .+. +-..+.++|+..|+.+.. .-....+.||-|||.|+.||..+...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 445577776531 111 112356899999998532 222456799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhh-cCeEEEEcCCeEE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 212 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv 212 (583)
|--+.||..++..+.+-+.+++++ |.|.+++||+|.- +-.+ -|+++++.-|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 999999999999999999999865 9999999999753 3344 4899888766653
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=180.30 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=68.5
Q ss_pred cccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
..|||||+||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|+++|+|. +.+.+|+++.|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997664 9999999999999999999999999999864 789999999975 46899999999
Q ss_pred cCC
Q 007952 207 GKG 209 (583)
Q Consensus 207 ~~G 209 (583)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 876
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-19 Score=187.37 Aligned_cols=174 Identities=24% Similarity=0.404 Sum_probs=127.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
...+...++|.+++|--+.|.||||||||+|.|+|+|.- |...|...+ .....+-|+||.|.+- .-|.||
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW--Pvy~g~L~~-------P~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW--PVYNGLLSI-------PRPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC--cccCCeeec-------CCCcceEeccCCCccC-cCcccc
Confidence 345789999999999999999999999999999999965 333443321 1234599999998765 346777
Q ss_pred HHHHHHH---cCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAAL---LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+-|.-. ++ .+..+. +..+.+|+.+.|++....-.| .....-||||||||+.+||.+-++|+.-+|||
T Consensus 564 QIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 564 QIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred eeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 6655311 00 011222 235566677766654433222 11234699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
.||+..+.....+.+..++ .|.+.|-++|+|+. +++
T Consensus 639 cTsAvsidvE~~i~~~ak~---~gi~llsithrpsl--wk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL--WKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHh---cCceEEEeecCccH--HHH
Confidence 9999999988888887765 49999999999974 554
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=163.57 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 132 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999997 78999999999999999999999999998766889999999964 467799999986
Q ss_pred C
Q 007952 208 K 208 (583)
Q Consensus 208 ~ 208 (583)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-18 Score=195.66 Aligned_cols=136 Identities=23% Similarity=0.396 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHcCCCCC-CC-----HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 79 PHLTVKETLTYAALLRLPNT-LT-----KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
..+||.|.+.|.-.+..+.. .. .++..++++ .++.+||.+. .|+ .+.+|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544432210 00 013334453 6888888754 454 46799999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 152 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 --~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999999999999999888999999999975 35 469999999 8999999999988743
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=193.02 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC-
Q 007952 80 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p- 151 (583)
.|||.|.+.|...+..+..... ++..+++ +.+..+||... .+ +.+.+|||||+||+.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432211000 1122222 23677788643 33 356799999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 152 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 152 -~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
++++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999964 34 589999999 899999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-17 Score=166.39 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=62.6
Q ss_pred CcccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 130 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.++++. .+ ++++|+.. .+.+.|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchh
Confidence 4568999999999999985 6999999999999999999999999998753 34 45555433 355666
Q ss_pred ---CeEEEEcCCeE
Q 007952 201 ---DKLILLGKGSL 211 (583)
Q Consensus 201 ---D~v~~L~~G~i 211 (583)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-18 Score=167.35 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=105.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
..++++.+|++++|+|||||||||||++|++.... ...|.. .. ..+..++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~-~~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP-AESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc-ccccccCCcCEE---EEEecCccc-----
Confidence 34666778999999999999999999999953210 111210 00 011223333221 111111110
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
... ....++++++ |++.+.+++.+|+++++||||+|+|+.....+
T Consensus 85 -----------------------------i~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 011 1235666665 47777788899999999999999999988887
Q ss_pred HH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 172 VQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 172 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++.
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 65 5677777789999999985 46778999999999999988876443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-17 Score=157.67 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=99.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccE-EEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i-~yv~Q~~~~~~~lTv 83 (583)
.++.+.+|+++++++|++++|+||||+|||||++++++... ..++ .+| +...+.+++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPI 71 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccC
Confidence 45689999999999999999999999999999999997421 0111 133 233445566
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.|++.. .++..+..+. ....+|+|++|+ +.+.+++.+|+++++|||++|+
T Consensus 72 ~d~I~~------------------------~~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLS------------------------RLSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeE------------------------ecCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 666532 1222211111 235799999965 5666788999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 007952 164 DSTTALRI-VQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i-~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|+.....+ ...++.+.+.|.++|++||+..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99776665 4567778878999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-17 Score=171.63 Aligned_cols=203 Identities=26% Similarity=0.352 Sum_probs=141.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----------ccccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----------KSLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----------~~~~~~i~yv~Q 73 (583)
..+.++.|.|+.|-.|..++++||||-||||||+-|+.|-..-|..=+|++..+.+. +.-.++...+..
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 457788999999999999999999999999999999986432121223444333221 000111111111
Q ss_pred CCC-----CCCCCCHHHHHHHH-HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 74 DDV-----LFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 74 ~~~-----~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
++. --...|+.|-+.-. ..+|. +.....+.++..+|.-||.+.... +++...+|||=|-||++||||
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLARAL 427 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLARAL 427 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHHHHH
Confidence 111 11345666665422 22332 112233456778888888875332 234568999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChh
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKAS 218 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 218 (583)
..+|-+|.|||||+.||..+..-+-..|..+. +|.++++||-. -+-..|..|+-|++.++. |.|...
T Consensus 428 flEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 428 FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999999999999999988888888875 49999999965 467889999999988764 456543
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-16 Score=153.11 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=107.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+.+|++++.++ ++++|.||||||||||||++++.... |. .|..+.. .+..++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 45689999999987 99999999999999999999873211 11 1222211 1345777755 566677766
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh--HHHHHHHHHHHHHhCCCEEEEeCC---C
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 160 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg--GerqRv~ia~~L~~~p~illLDEP---t 160 (583)
++..+ .|. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 65432 111 122233333333579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887552 23445555555 88999999994 577888988778889988877766654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=153.39 Aligned_cols=139 Identities=21% Similarity=0.258 Sum_probs=95.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
+-++|+||||||||||+++|+|.+. +.+|+|.++|+++. ++..+.+++++|++. .+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 5789999999999999999999764 56899999998874 133445678888653 34455544310
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 96 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 96 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
+ ..| ........+|+++++|||++ ...+...+
T Consensus 182 -----k--------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----K--------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----H--------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 001 12223336999999999974 33455555
Q ss_pred HHHHHCCcEEEEEecCCChH-H-----------HhhcCeEEEEcCCeEEEEcChhhH
Q 007952 176 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+ ++|+++|+++|++..+ + ...|||+++|++|+ ..|++++.
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 4699999999986432 2 25689999999886 55665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=153.89 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=135.1
Q ss_pred ccccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC
Q 007952 4 SEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 78 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~ 78 (583)
.+.+.-+.+..+.|+.| |++..+|+||.||||++++++|++. |...|+|-. -.++|=||.-.-=
T Consensus 346 p~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK 414 (592)
T KOG0063|consen 346 PKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPK 414 (592)
T ss_pred CcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcc
Confidence 34556677888888877 5789999999999999999999764 334444422 2477888875544
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
..-||++.+.--.+ +.-.....+.++++-|.+++..|. .+.+|||||+||+++|..|-..+++++.||
T Consensus 415 ~~~tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 45689987753211 011123457788888888877665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 159 PTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|.+=||++.+..--+.+++.- +.++|-.++.||...+. -++||+++.
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf 530 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVF 530 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEE
Confidence 999999999999999998864 55889999999964432 357887655
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=143.28 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=65.5
Q ss_pred CcccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 130 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
...+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4679999999999999886 699999999999999999999999998764 457888988854 344443
Q ss_pred --CeEEEEcCCeE
Q 007952 201 --DKLILLGKGSL 211 (583)
Q Consensus 201 --D~v~~L~~G~i 211 (583)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999986
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-15 Score=142.23 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=58.0
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
...+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+---++
T Consensus 59 ~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~ 135 (185)
T smart00534 59 LSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR 135 (185)
T ss_pred ccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence 3578888776433332 23599999999999999999887765 556777774 89999999996 4677787533334
Q ss_pred CCeEEE
Q 007952 208 KGSLLY 213 (583)
Q Consensus 208 ~G~iv~ 213 (583)
+++...
T Consensus 136 ~~~~~~ 141 (185)
T smart00534 136 NLHMSA 141 (185)
T ss_pred EEEEEE
Confidence 444433
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=134.49 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 106 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 106 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
+.+.+.++..++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34555666655542 279999999999997764 46789999999999999999999999999875
Q ss_pred CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 182 GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 182 g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+.-+|++||++ .+++.+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 46789999985 4788899887663
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=9e-14 Score=159.67 Aligned_cols=137 Identities=21% Similarity=0.278 Sum_probs=94.7
Q ss_pred ccceeec-----eEEEEeCC-eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC-CC
Q 007952 6 EKDILNG-----ITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~-----vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-~~ 78 (583)
.++++++ +|+.+.+| ++++|.||||+|||||||+|+|.... +..| .+||.... .+
T Consensus 302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~ 363 (771)
T TIGR01069 302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI 363 (771)
T ss_pred cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc
Confidence 3456654 78889888 89999999999999999999985211 1122 13333321 11
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+ +.+.+. . + +..+ + .+. .....+|+|+++++.|++.+ .+|+++++||
T Consensus 364 ~---~~d~i~--~--~----i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE 410 (771)
T TIGR01069 364 P---YFEEIF--A--D----IGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDE 410 (771)
T ss_pred c---chhhee--e--e----cChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecC
Confidence 1 111110 0 0 0000 0 011 01357999999999998876 8999999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 007952 159 PTSGLDSTTALRI-VQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 159 PtsgLD~~~~~~i-~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|++|+|+.....+ ..+++.+++.|.++|++||+..
T Consensus 411 ~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 411 LGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9999999999988 5788888888999999999964
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=130.41 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=84.6
Q ss_pred EEEEeCC--eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCC-CCCHHHHHHHH
Q 007952 14 TGSVNPG--EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKETLTYA 90 (583)
Q Consensus 14 s~~i~~G--e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~-~lTv~e~l~~~ 90 (583)
++.+.++ ..++|.||||+|||||||.++....- ...|...... .-.++|..|....+. ..++.+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~----- 87 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS----- 87 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh-----
Confidence 4445554 79999999999999999999842110 1234432211 234677777432111 111111
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--gGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
++| .-|-||++++++++.+|+++++|||++|+|+...
T Consensus 88 -----------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 -----------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred -----------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 122 3467899999999999999999999999999765
Q ss_pred HHH-HHHHHHHHHC---CcEEEEEecCCC
Q 007952 169 LRI-VQMLQDIAEA---GKTVVTTIHQPS 193 (583)
Q Consensus 169 ~~i-~~~l~~l~~~---g~tii~~~H~~~ 193 (583)
..+ ...++++.++ +.++|++||++.
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 555 5688888764 248999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-13 Score=120.13 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=60.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +++ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 57899999999999999999999999999999986 5889999987642 345567788777 443 49
Q ss_pred HHHHHHHH
Q 007952 83 VKETLTYA 90 (583)
Q Consensus 83 v~e~l~~~ 90 (583)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=116.77 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007952 419 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 498 (583)
Q Consensus 419 ~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~ 498 (583)
++..|+++|.+.+++..++..+++..+.+++.+++. ..++..++..++..++..++|.++++..+|.+.+..+.+++.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~ 165 (236)
T TIGR01247 88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLM 165 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 678999999999999999999998888888777553 344444555566677889999999999999999888888888
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHH
Q 007952 499 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYL 572 (583)
Q Consensus 499 ~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~ 572 (583)
.++.+++|.+.| .+|+|++|+.+++|.+|+.|++-..-.++ ......+.++++|+.+.+++.+++-.
T Consensus 166 ~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 166 LPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-------SPTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-------CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998 79999999999999999999965443221 11233445788888888887776643
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=124.84 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=87.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+.+|+++.+++|++++|.||||+||||+++++++... .+..|...... . -.++|..|= +-.+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPAS-S------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcC-c------eEEeccceE---EEEecCcc
Confidence 4678899999999999999999999999999999998322 13445533221 1 112332221 11100111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--gGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
++. .++| ..|-+|++-...-+.+|+++++|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 100 0111 22334444444445689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHC-CcEEEEEecCCC
Q 007952 164 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i-~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87777664 5677777776 889999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=118.61 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=119.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007952 419 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 498 (583)
Q Consensus 419 ~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~ 498 (583)
+...++++|.+..++..+++++++..+.|++.|++.+ +++.+++.+++..++..++|.++++.+++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567799999999999999999999999999999864 4666677778888999999999999998765543 33444
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 499 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 499 ~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+.++++|.+.| .+|+|++|+.|++|.+|+.+++-.+.+.+ .....+.++++|+++.+++.++++...|+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------~~~~~~~~~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------NDGTLWQAVAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566667888887 79999999999999999999998777643 12234668889999999999988888775
Q ss_pred hh
Q 007952 577 MK 578 (583)
Q Consensus 577 ~~ 578 (583)
.+
T Consensus 206 ~~ 207 (208)
T TIGR03062 206 KR 207 (208)
T ss_pred hc
Confidence 54
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=134.38 Aligned_cols=170 Identities=26% Similarity=0.357 Sum_probs=117.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE----------EECCccCC--------ccccccEEEEccCCCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI----------TYNDHPYS--------KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I----------~~~g~~~~--------~~~~~~i~yv~Q~~~~~~ 79 (583)
+||++.+++|.||-||||-+++++|++++ +..+.. ++-|..+. ..++ .-.-||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nlg~~~~pp~w~~il~~frgselq~yftk~le~~lk--~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLK--AIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CCCCCCCCcchHHHhhhhhhHHHhhhhhhhcccccc--CcCChHHHHHHH
Confidence 58999999999999999999999998753 222110 01111100 0000 001112111111
Q ss_pred ---CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 ---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
..+|+++|. ....++..+++++.+.|.+..+.- +..|||||-||.+||++-+.+.++.++
T Consensus 175 r~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 175 RAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeEe
Confidence 113333332 112223456778888887766653 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|||.+-||...+.+--..++.+.+..+=||++.||.+- +--+.|-+.+|..
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999998888899999999753 4446788888863
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=128.77 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPt-----sgLD~~~~~~i~~~l~~l~~ 180 (583)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-12 Score=142.16 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred cccChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999974 45689999999
Q ss_pred cCCe
Q 007952 207 GKGS 210 (583)
Q Consensus 207 ~~G~ 210 (583)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-12 Score=124.87 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=64.4
Q ss_pred cCcccChHH--------HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 129 FVRGVSGGE--------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 129 ~~~~LSgGe--------rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+..+ ++ +.++...+.|.|+.+|+... ...
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCC
Confidence 345689999 9999999999899999999 999999765554 55 55555467899999999654 578
Q ss_pred cCeEEEEcCCeE
Q 007952 200 FDKLILLGKGSL 211 (583)
Q Consensus 200 ~D~v~~L~~G~i 211 (583)
+|.|.+|+.|+.
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=127.18 Aligned_cols=175 Identities=19% Similarity=0.264 Sum_probs=115.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC---C---------ccccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---S---------KSLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~---~---------~~~~~~i~yv~Q 73 (583)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.- . ..+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS--ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 9999999999999999999999999999653 4679999866432 2 124567888887
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH-HHHHhCCC
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 152 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia-~~L~~~p~ 152 (583)
.+.-. -.+....+.+ -.+.|.+.+-|- |..+ ...+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll---~~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVML---MMDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEE---EEeChH-----HHHHHHHHHH----
Confidence 54311 0111111111 112233333232 1111 011222 11111 1111
Q ss_pred EEEEeC--CCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDE--PTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDE--PtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+.| .|+|+|+.....+.+.++++.+ +|. ||++.+||.++ ..||++..+.+|+++..++..+.
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence 11234 3789999999999999999874 575 99999999763 67999999999999999987763
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=107.67 Aligned_cols=237 Identities=12% Similarity=0.029 Sum_probs=144.9
Q ss_pred HHHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhhCCCCC-ChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 330 YTILFRRGIKE-HRH-DYFSWLRITQVLATAVILGLLWWQSDSK-SPKGLEDQ--AGLLFFIAVFWSFFPIFTAIFTFPQ 404 (583)
Q Consensus 330 ~~~l~~R~~~~-~r~-~~~~~~r~~~~~~~~li~G~lf~~~~~~-~~~~~~~~--~g~lf~~~~~~~~~~~~~~i~~~~~ 404 (583)
...+.+|+++. +|+ +......+++-++.-+++|..+-...++ +..+..+- -|.+-+.+.+.++.........-..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r 86 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMR 86 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888876 455 4444445666666666677665432111 10111111 1222222221111110000001112
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 484 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~ 484 (583)
|+..+.|-+..-. ++..+.++|++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.+++++.
T Consensus 87 ~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~ 163 (253)
T TIGR01291 87 VTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALA 163 (253)
T ss_pred HcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443444 678999999998877666666655544443 344433 3343344455566777789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHH
Q 007952 485 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 562 (583)
Q Consensus 485 ~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~ 562 (583)
++.+.+..+..++..|+++.+|.+.| .+|.|++|+.+++|..|+.|++-..-+++ +....+.++++++++
T Consensus 164 ~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~~~~l~~~ 235 (253)
T TIGR01291 164 PSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG--------PGTQVGLHLGALCLY 235 (253)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHH
Confidence 99999888889999999999999988 79999999999999999999965554322 111224567888888
Q ss_pred HHHHHHHHHHHHHHh
Q 007952 563 VFGYRLLAYLSLRKM 577 (583)
Q Consensus 563 ~~~~~~l~~~~L~~~ 577 (583)
.+++..++....|++
T Consensus 236 ~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 236 AVVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888877777666654
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-12 Score=148.95 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=74.1
Q ss_pred ccCcccChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 007952 128 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 197 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 197 (583)
..+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4678999999999999999986 79999999999999999999999999999888999999999975 467
Q ss_pred hhcCeEEEEcCC
Q 007952 198 HKFDKLILLGKG 209 (583)
Q Consensus 198 ~~~D~v~~L~~G 209 (583)
..+|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=138.09 Aligned_cols=76 Identities=24% Similarity=0.396 Sum_probs=69.3
Q ss_pred cccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4689999999999999997 5899999999999999999999999999975 789999999984 55899999999
Q ss_pred cCC
Q 007952 207 GKG 209 (583)
Q Consensus 207 ~~G 209 (583)
+++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-12 Score=145.87 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=63.8
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
...+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++.. ....+|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-E
Confidence 357999999999999988 8999999999999999999888854 677787789999999999542 22334544443 4
Q ss_pred CeEEE
Q 007952 209 GSLLY 213 (583)
Q Consensus 209 G~iv~ 213 (583)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 55554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-11 Score=130.11 Aligned_cols=137 Identities=23% Similarity=0.394 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC--
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN-- 150 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~-- 150 (583)
..|++.|.+.|...+.+... ..+..+..+.++ |..+||.-.. -++...+|||||.||+-+|..+-++
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 46788888888776653221 111112222232 3445664321 1345679999999999999999776
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
-=+++||||+-||-+..-.++++.|++|++.|.|+|++.||+ +....+|+|+-+ +.|+|++.|+++++++
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 347799999999999999999999999999999999999995 467889999998 4689999999999875
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=139.00 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.9
Q ss_pred cCcccChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 007952 129 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 197 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~----------~~p~illLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 197 (583)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 45789999999999999887 599999999998 789999999999999998 5889999999964 45
Q ss_pred hhcCeEEEEcC-CeE
Q 007952 198 HKFDKLILLGK-GSL 211 (583)
Q Consensus 198 ~~~D~v~~L~~-G~i 211 (583)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 544
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-09 Score=105.34 Aligned_cols=233 Identities=11% Similarity=0.153 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC-CC------CChhh--HHHHHHHHHHHHHHHHHHHHHH
Q 007952 328 QQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DS------KSPKG--LEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 328 ~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~-~~------~~~~~--~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
+++..+++|.++. .|++......+++-++.-+++|.+|-.. +. ++..+ ..--.|.+-+.....++..
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~--- 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS--- 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh---
Confidence 5788899999986 5666555566777777777778777432 10 00001 1112233333222222111
Q ss_pred HHH-HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIF-TFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGL 476 (583)
Q Consensus 398 ~i~-~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~ 476 (583)
+.. ..-+|+..+.+=+.... +...+.++|++...-..+++.+++..+.+. .|.+.+...++.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11223334444454444 678899999999987777766555544433 366555444444444455667778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--C---CccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCc
Q 007952 477 GLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--E---VPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDS 551 (583)
Q Consensus 477 g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~---ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~ 551 (583)
|+++|+++++.+.+..+.++++.+++..+|.+.| . +|+|++|+.++||..|..|++=..-+++ .
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~-----------~ 225 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ-----------L 225 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC-----------c
Confidence 9999999999988888888888888889998875 3 4889999999999999999865432211 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 552 GFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 552 ~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+...+++.++.+++..++....||
T Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 226 NLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 2455667777777777766665554
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=120.76 Aligned_cols=64 Identities=22% Similarity=0.489 Sum_probs=54.4
Q ss_pred CcccChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 130 VRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999999988776 899999999999999999999999888776789999999874
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=117.05 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=94.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHH-HHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTL-l~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
+.+-+++|++++|.|+|||||||| ++.+.+... .| .++.|+..+ .|..+.+....
T Consensus 17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~ 72 (230)
T PRK08533 17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMM 72 (230)
T ss_pred hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHH
Confidence 345689999999999999999999 688887432 12 123455532 35555555443
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL---- 163 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgL---- 163 (583)
.+.. . +++.... +.-...+ ....+|+++.++-.+.+.+- .+|+++++||||+++
T Consensus 73 ~~g~----~-------~~~~~~~-~~l~~~~------~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~ 134 (230)
T PRK08533 73 SLGY----D-------INKKLIS-GKLLYIP------VYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDA 134 (230)
T ss_pred HhCC----c-------hHHHhhc-CcEEEEE------ecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCc
Confidence 3221 1 1111111 1000001 01236777665555444333 369999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhhcCeEEEEc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 207 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 207 (583)
|+.....+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 135 d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 135 SEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888889999999998888888776664321 1233567777775
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=120.75 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=88.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+-+|+++..++|++++|.||||+||||+++++++...- ... |..+... ..+++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQM------GMDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHc------CCccCcc-ccEeccc---cEEEEecCccc
Confidence 46788999999999999999999999999999999974210 011 1111100 0111111 11222222222
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg--GerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
++.. ++|- -|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2210 1111 2444444444445789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CcEEEEEecCCC
Q 007952 164 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i~~~-l~~l~~~-g~tii~~~H~~~ 193 (583)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999888888 7778776 899999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-09 Score=104.99 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=113.4
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 484 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~ 484 (583)
|+-.+.|-+..-. ++..|+++|.+..++..+++..++ .+++++.|++.....+ ..++.+.+....+.+++.++++++
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555544 788999999998888877665544 4556677887654333 223333444555666777777766
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHH
Q 007952 485 M---DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCAL 559 (583)
Q Consensus 485 ~---~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l 559 (583)
+ +.+.+..++.+..++++++||.+.| .+|.|++|+.+++|.+|+.+++-..-.+ |.+....+.+++++
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-------~~~~~~~~~~~~~l 213 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-------SVDTFGAVRDLVVV 213 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-------CCChhhHHHHHHHH
Confidence 4 4555577888888899999999998 7999999999999999999987654322 22233345678888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007952 560 VAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 560 ~~~~~~~~~l~~~~L~~ 576 (583)
+++.+++..++....||
T Consensus 214 ~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 214 LAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888887777666554
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=110.66 Aligned_cols=145 Identities=21% Similarity=0.125 Sum_probs=95.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 007952 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 102 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 102 (583)
+.|.||+|+|||||.--++-... .. | +.+.|+.= ..|..+.+.....+. .+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~------g--------~~v~~~s~------e~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---AR------G--------EPGLYVTL------EESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HC------C--------CcEEEEEC------CCCHHHHHHHHHHcC----CCh-
Confidence 67899999999999876653111 11 1 12334432 124555444433221 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 007952 103 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQ 173 (583)
Q Consensus 103 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD---~~~~~~i~~ 173 (583)
++ +...|+....+ ..+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 54 ------~~-l~~~g~l~~~d-----~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 54 ------ER-LEDEGLLAIVD-----ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred ------HH-HHhcCCeEEEe-----cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 11 22233332222 235678999998 4555555667999999999999999 888888999
Q ss_pred HHHHHHHCCcEEEEEecCCCh--------HHHhhcCeEEEEc
Q 007952 174 MLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLG 207 (583)
Q Consensus 174 ~l~~l~~~g~tii~~~H~~~~--------~i~~~~D~v~~L~ 207 (583)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998653 2567889999886
|
A related protein is found in archaea. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-10 Score=104.97 Aligned_cols=68 Identities=26% Similarity=0.513 Sum_probs=55.4
Q ss_pred ccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 125 ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
.|+......|-||-=---+.+. .++.-+++||||-++|.+.-+..++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3444556789999643333332 4678899999999999999999999999999999999999999884
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-11 Score=115.87 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
...+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccC
Confidence 346999999999999999999999999995 44444 445666777666799999999983 3556789999999
Q ss_pred CCeEEEEcC
Q 007952 208 KGSLLYFGK 216 (583)
Q Consensus 208 ~G~iv~~G~ 216 (583)
+|++.+.-+
T Consensus 150 ~~~i~~~~~ 158 (174)
T PRK13695 150 GGRVYELTP 158 (174)
T ss_pred CcEEEEEcc
Confidence 999877643
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=118.41 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=94.2
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-CCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.+++.. +....+..+.++.+... +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~------------ 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG--Q------------ 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--C------------
Confidence 557788999999999999999999999999653 456666664311 00000112222211100 0
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
+ ...++- .-.+..+|-.+|+++++|||.+ .+.
T Consensus 201 ------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 201 ------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 001111 1134556778999999999996 345
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 172 ~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6677776643346799999976 45678999999999998888887765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-10 Score=135.79 Aligned_cols=79 Identities=27% Similarity=0.304 Sum_probs=69.2
Q ss_pred ccCcccChHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERKR------VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerqR------v~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.+++.+.+||++||++ ++...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 3567899999995 5555678899999999999999999999999999999887788999999996 3678999
Q ss_pred eEEEEcC
Q 007952 202 KLILLGK 208 (583)
Q Consensus 202 ~v~~L~~ 208 (583)
+++.|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=134.69 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=68.7
Q ss_pred ccCcccChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 128 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~~--------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|.++++.|+||+++||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4578999999999999999996 89999999999999999999999999999988999999999743 23344
Q ss_pred cCeEEEEcC
Q 007952 200 FDKLILLGK 208 (583)
Q Consensus 200 ~D~v~~L~~ 208 (583)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 456666643
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-07 Score=94.32 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007952 418 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVT 497 (583)
Q Consensus 418 Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~ 497 (583)
-++..+.+++++...-..++..++...+.+...|.+.. ........+++..++....|+++++..++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 37788999999987766666655555555444466543 2222233333333333445888888888888888888888
Q ss_pred HHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 007952 498 IMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLR 575 (583)
Q Consensus 498 ~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~ 575 (583)
+.+++..+|.+.| ++|+|++|+.+++|..|..|++=..-+++ .....+.+.++++++.+++.+++....|
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------SDVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999987 79999999999999999999865442211 1112356788888888888888877776
Q ss_pred Hhh
Q 007952 576 KMK 578 (583)
Q Consensus 576 ~~~ 578 (583)
|.+
T Consensus 251 r~~ 253 (257)
T PRK15066 251 RGR 253 (257)
T ss_pred hhc
Confidence 544
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=123.24 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.6
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhhcCeEEEEcCCeEEEEcChh
Q 007952 148 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 148 ~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++... +.+.||..++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 4799999999999999 79999999999999998899999999998642 1367999999999998776643
Q ss_pred hHHHHHHhcCC
Q 007952 219 EAMAYFSSIGC 229 (583)
Q Consensus 219 ~~~~~f~~~g~ 229 (583)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 24455553
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-10 Score=102.92 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=48.5
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 195 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 195 (583)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345566667788888889999999999994 5555556666666666555699999999987553
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=128.53 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.7
Q ss_pred cCcccChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-cEEEEEecCCChHHHhh
Q 007952 129 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 129 ~~~~LSgGerqRv~i------a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~~H~~~~~i~~~ 199 (583)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .+||++||++. ..+.
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999976 488999999999999999999999999999998654 33 3 48999999964 4578
Q ss_pred cCeEEEEc
Q 007952 200 FDKLILLG 207 (583)
Q Consensus 200 ~D~v~~L~ 207 (583)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=114.47 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=107.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.++++++ +.+.+||.++|+|+||+|||||+++|++... +..|.|.+.|+.. .+|.|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGerg--------------------~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGERG--------------------REVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCCc--------------------ccHHHH
Confidence 3577774 9999999999999999999999999999643 4556665554321 366665
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-------hCCCEEEEeCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEP 159 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-------~~p~illLDEP 159 (583)
+... +..-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++|||
T Consensus 201 ~~~~---------------------l~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 201 IRKE---------------------LGEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHH---------------------hhhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 5421 111122210 011 123578999999999998887 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
|+..|+. .++-..+.+....|.+..+.+|. ..+.+ |.-...+|.+...++.
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~E---Rag~~~~GSiT~~~tv 306 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLE---RSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHH---HhccCCCcceEEEEEE
Confidence 9999996 55555555655458888888884 23444 4434578888776654
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-09 Score=102.67 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 142 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 142 ~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+++++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778888999999999996 555433333 345679999999999753 46788886663
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.4e-09 Score=103.39 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 10 LNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 10 L~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| +++.|+..+. +..+.+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~~~ 70 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSYLK 70 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHHHH
Confidence 4443 56799999999999999999999998862110 1 11 2344555432 3333332
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh--CCCEEEEeCCCCC---C
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG---L 163 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~--~p~illLDEPtsg---L 163 (583)
-...+. +.- ++.+. -|.-...+... ......|.++++.+.....++. +|+++++||||+. .
T Consensus 71 ~~~~~g----~~~-------~~~~~-~g~l~i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 71 QMESVK----IDI-------SDFFL-WGYLRIFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHCC----CCh-------hHHHh-CCCceEEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 221111 110 01100 01101111000 0122356788999999999997 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~~ 208 (583)
|.....++++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555556666677777789999999998653 13456677777753
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-09 Score=131.56 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.6
Q ss_pred ccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE
Q 007952 128 SFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
..+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.+||++||++.. ...||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhH
Confidence 356789999999999999985 57799999999999999999999999999875 5789999999763 5789999
Q ss_pred EEEc
Q 007952 204 ILLG 207 (583)
Q Consensus 204 ~~L~ 207 (583)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-09 Score=131.26 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=61.4
Q ss_pred CcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCChHHHh
Q 007952 130 VRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFH 198 (583)
Q Consensus 130 ~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~~~i~~ 198 (583)
...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||++. .+..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHH
Confidence 3589999999 99999999999999999999999999999999999988742 3789999999965 3555
Q ss_pred hc
Q 007952 199 KF 200 (583)
Q Consensus 199 ~~ 200 (583)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 54
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=101.92 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=86.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC-ccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 98 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g-~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 98 (583)
|++..|+||+|+|||||.-.++=.. ..|.=+.++ ... ....++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6788999999999999998887322 122211111 111 1123455555332
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 007952 99 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 161 (583)
Q Consensus 99 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~----------------~L~~~p~illLDEPts- 161 (583)
+.++..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 22334455666666666544333221 2245555555443 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 007952 162 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 162 -----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
.+|+.....+++.|++++++ |.||++++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999865 899999999863
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=110.65 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=93.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.++++.+..++.|++++++||||+||||++..|++... ...|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc---cchhHHHHH
Confidence 34667777788999999999999999999999998542 12221 3588888876 347899999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 161 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq-Rv~ia~~L~~~p-----~illLDEPts 161 (583)
.+.+....- +.....+..+...+..++.+....++ .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 987665321 11111222333445556666544433 333323322 234444555555 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H 190 (583)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3445555555545555444454
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-09 Score=113.32 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=44.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
+.+|++||+++++||+++|+|||||||||||+ +|... ++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 56543 444458999998764
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=120.61 Aligned_cols=77 Identities=32% Similarity=0.461 Sum_probs=66.9
Q ss_pred CcccChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEecCCChHH
Q 007952 130 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 196 (583)
Q Consensus 130 ~~~LSgGerq------Rv~ia~~L~~~-----p-~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~~H~~~~~i 196 (583)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+++.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5789999999 88999888863 3 67999999999999999999999999987665 8999999974 3
Q ss_pred HhhcCeEEEEcC
Q 007952 197 FHKFDKLILLGK 208 (583)
Q Consensus 197 ~~~~D~v~~L~~ 208 (583)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 467999999964
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-09 Score=125.30 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred cCcccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 129 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
.+..||||||++++||++++. +|++++||||++|||+.....+.++|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 467899999999999999985 6899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 007952 205 LLGK 208 (583)
Q Consensus 205 ~L~~ 208 (583)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=82.62 Aligned_cols=60 Identities=30% Similarity=0.320 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------HHHHHHCCcEEEEEec
Q 007952 131 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIH 190 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~------l~~l~~~g~tii~~~H 190 (583)
....+++..+..+.++--.+|+++++||+..-.+.......... .......+..+|+++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 35677888888888887778999999999999999988877652 2222334778888888
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-06 Score=85.77 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=117.1
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG-AI 483 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~-~~ 483 (583)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....++.......+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 456777777766666666666666666666632 223344445555566677777887666 35
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHH
Q 007952 484 LMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 561 (583)
Q Consensus 484 ~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~ 561 (583)
.++.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+.. .+..+.++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 266 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------NDGIWISLLILLL 266 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHH
Confidence 566777778887888899999999998 7999999999999999999997766543321 1125667889999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 007952 562 MVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 562 ~~~~~~~l~~~~L~~~~~~ 580 (583)
+.+++.+++...+|+.+++
T Consensus 267 ~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999886653
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=99.21 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 142 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 142 ~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
.+..+|-.+|+++++||+. |+.++...++ .+..|.+++.|+|..+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 35679999999998543 4566777554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=103.40 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=47.6
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 143 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567778899999999999999 7999999999999999889999999999764
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-07 Score=96.96 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=107.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---c---------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K---------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~---------~~~~~i~yv~Q 73 (583)
...+++++ +.+.+||.++|+|+||+|||||+++|+|... +..|.+...|..-. + .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35789999 9999999999999999999999999999643 44566655554321 1 12233333333
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+. ++.+-..- ...--.+.|.+..-|- |..+ ....++- .|+|+-- ==
T Consensus 227 ~d~-----~p~~r~~~------------~~~a~t~AE~frd~G~----~Vll---~~DslTr-------~A~A~RE--is 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKG------------AYVATAIAEYFRDQGK----DVLL---LMDSVTR-------FAMAQRE--IG 273 (440)
T ss_pred CCC-----CHHHHHHH------------HHHHHHHHHHHHHCCC----CEEE---EEeChHH-------HHHHHHH--HH
Confidence 222 12111100 0111122333333342 2221 1123331 1111100 00
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHCCc-------EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||..+ ..+|++.-+.+|+++..++.++.
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 234565 559999999999999999876666 78888888643 46899999999999999887764
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-08 Score=102.06 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=55.3
Q ss_pred cccChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 131 RGVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~---------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.++++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 679999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-08 Score=103.79 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=107.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc--ccEEEECCccCCc----------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~--~G~I~~~g~~~~~----------~~~~~i~yv~Q 73 (583)
...+++++ +.+.+||.++|+|+||+|||||+++|+|... +.. -|.|-.+|.++.+ ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35789999 9999999999999999999999999999653 221 2455555554421 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++..+..+++.|++.+.+....... +.|--+++ .++..+.. -+++ ++
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A------~REi--------sl---------- 266 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMA------QREI--------AL---------- 266 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhh------hhHH--------HH----------
Confidence 9999999999999987665421110 00000000 01111100 0111 11
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHH---CC-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEc
Q 007952 154 LFLDEP--TSGLDSTTALRIVQMLQDIAE---AG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFG 215 (583)
Q Consensus 154 llLDEP--tsgLD~~~~~~i~~~l~~l~~---~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 215 (583)
.+.|| +.|-.+..-..+-+++.+..+ .| .|.+.+..-+..++-+ ..|.+.-+-||+++..-
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 12343 347777777777777776532 23 4777776655444333 46788878899998743
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-06 Score=78.65 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=91.7
Q ss_pred HHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHH
Q 007952 402 FPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGA--GPFFLSMLTVFLSIVAAQGLGLA 479 (583)
Q Consensus 402 ~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~--~~f~~~~~~~~l~~~~~~~~g~~ 479 (583)
.-.|+-++.|-+..-. ++..++++|++...-..+++.++..++.++ .|.+.+. ...+.+++...+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777 678999999999998988888777777754 3877653 22223333333344445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHH
Q 007952 480 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILL 533 (583)
Q Consensus 480 i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~ 533 (583)
++...++.+. .....++.+|+.+.+|.+.| ++|+|++|+.+++|..|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5554555443 33446667788888888888 89999999999999999999863
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=99.76 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=64.0
Q ss_pred cccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 131 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 457999999999999998 899999999999999999999999888653 23555555433 4699
Q ss_pred eEEEEcCCeEEEEcC
Q 007952 202 KLILLGKGSLLYFGK 216 (583)
Q Consensus 202 ~v~~L~~G~iv~~G~ 216 (583)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998754443
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-08 Score=99.83 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
-|+++ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988665
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=109.99 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=70.7
Q ss_pred ccCcccChHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 128 SFVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~------~~--p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+..|||||+-.++||.+|+ .+ -+.+||||||..||+.+...+++.|..+...+.+|++|||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 367899999999999888875 35 699999999999999999999999999998899999999985 56789
Q ss_pred cCeEEEEcC
Q 007952 200 FDKLILLGK 208 (583)
Q Consensus 200 ~D~v~~L~~ 208 (583)
+|+++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-08 Score=110.07 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=98.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHh--CCCCCCCcccEEEECCccCCccc---cccEEEEccCCCCCCCCC
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~--g~~~~~~~~G~I~~~g~~~~~~~---~~~i~yv~Q~~~~~~~lT 82 (583)
-||.+ .+=+++|..+.|.||+|||||||..-.+ |... .-+..+++......+++ .+..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC---
Confidence 35554 5678999999999999999999988763 3211 01234455433222211 122333333110000
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH--HHHHhCCCEEEEeCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPT 160 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia--~~L~~~p~illLDEPt 160 (583)
++.+ ... .+. .....+++.+++++..+.. .+.+|+|++|||.|+ .++..+|+..
T Consensus 84 ---~l~~---~~~---~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 84 ---KLFI---LDA---SPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred ---ceEE---Eec---Cch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 0000 000 000 0011123444444444432 458999999999999 6666666543
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH-------H-HhhcCeEEEEc
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 207 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-------i-~~~~D~v~~L~ 207 (583)
...+..+.++++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999986421 1 45789999986
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=89.46 Aligned_cols=81 Identities=25% Similarity=0.185 Sum_probs=59.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-CccccccEEEEccCC--CCCCCCCHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-SKSLKSKIGFVTQDD--VLFPHLTVKETL 87 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~~~~~~~i~yv~Q~~--~~~~~lTv~e~l 87 (583)
+=+.+.+++|+.++|+||||||||||+++|+|..+ +..|.|.+++..- ....+..++++.|.+ ...+..|+.+.+
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 34456788999999999999999999999999653 5679999977432 112234566666554 346778999988
Q ss_pred HHHHHc
Q 007952 88 TYAALL 93 (583)
Q Consensus 88 ~~~~~~ 93 (583)
..+.+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 876554
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=109.03 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
..|=+|+++. +.+.++.|.|||++||||+||.++-...- ..-| .|||-+..- +++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~---i~~~-- 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESAR---IGIV-- 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceE---eccc--
Confidence 3455677777 66789999999999999999998742100 0011 233332211 1111
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 161 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~--~p~illLDEP---ts 161 (583)
+++...+|-.+ . ...+.|-=+.....++..|-. +++++++||| |+
T Consensus 651 ----------------------d~I~triga~d---~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 651 ----------------------DRIFTRIGASD---D-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ----------------------CeeeeccCccc---c-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111222211 1 124677766666666666654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCe
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 202 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 202 (583)
.+|..+ .....++.+.+. |.+++++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 899544 345566666665 58999999983 56677764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-07 Score=89.35 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=66.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH-cCCCCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 100 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~-~~~~~~~~ 100 (583)
+++|.||||||||||.+.|++.+. .|. +.++.+|+.. ..++..+....... ...|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc-
Confidence 579999999999999999998541 122 3344444332 22333332221110 1111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
..+...+.++.+...+..+. +....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22334456666655433222 234678888776555 5678999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=92.29 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=43.5
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 147 IIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+|..
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 346899999999999999 889999999999998889999999999754
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-07 Score=109.00 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=53.1
Q ss_pred cCcccChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 007952 129 FVRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191 (583)
Q Consensus 129 ~~~~LSgGerqRv~----ia~~--------L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 191 (583)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35799999999996 5644 45799999999999999999999999999887 7889999986
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-06 Score=105.44 Aligned_cols=162 Identities=16% Similarity=0.245 Sum_probs=88.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
+++..+++++++|+|++|+|||||++.+.++.. ...+|.+++++..+.... .. +-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLS-RQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHh-hcCCeEEEeeccccccch-hh--cccccccc-------cchhH---
Confidence 456778899999999999999999999987653 245788988763221110 00 00000000 00000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 007952 93 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172 (583)
Q Consensus 93 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~ 172 (583)
...++.+.++++..++. +..+ ++.|+| |..++-+++||+- |.. +.+
T Consensus 266 ---------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 01122334444443331 1122 566666 3356667889984 433 334
Q ss_pred HHHHHHH---HCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcCC
Q 007952 173 QMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 229 (583)
Q Consensus 173 ~~l~~l~---~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 229 (583)
+.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 4444432 358899999998532 2222 566655431 134677777766544
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-07 Score=86.75 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--c-cccEEEEccCCCCCCCCCHHHHHHH
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--L-KSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--~-~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+||+++|+|+||||||||+++|+|++. -+.++|.++... . +...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999653 157788765421 1 1235666776555555555555544
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=80.00 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+++.+-+++|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578998899999999999999999999999988753
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=92.68 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=98.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC---ccCCc--------cccccEEEEccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK--------SLKSKIGFVTQDD 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g---~~~~~--------~~~~~i~yv~Q~~ 75 (583)
..+++.++ .+.+||.++|+||||+|||||+++|++... ++.|.|.+.| .++.+ ..++.+++|+|.+
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 56788886 899999999999999999999999998543 4678888864 44321 1346799999987
Q ss_pred CCCCCCCHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH-HHHhCCC
Q 007952 76 VLFPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN-EIIINPS 152 (583)
Q Consensus 76 ~~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~-~L~~~p~ 152 (583)
.- ..+-+ .+.+ -.+.|.+..-|- |..+ ....++ |.+-|. ++.
T Consensus 230 ~~-----~~~r~~~~~~a--------------~~iAEyfrd~G~----~Vll---~~DslT-----r~A~A~rEis---- 274 (450)
T PRK06002 230 ES-----PMMRRLAPLTA--------------TAIAEYFRDRGE----NVLL---IVDSVT-----RFAHAAREVA---- 274 (450)
T ss_pred CC-----HHHHHHHHHHH--------------HHHHHHHHHcCC----CEEE---eccchH-----HHHHHHHHHH----
Confidence 41 21211 1111 011222222221 1111 011222 111110 000
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--C--C-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEc
Q 007952 153 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--A--G-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFG 215 (583)
Q Consensus 153 illLDEP--tsgLD~~~~~~i~~~l~~l~~--~--g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 215 (583)
+.++|| +.|-.+..-..+-+++.+..+ . | .|.+.+..-+..++-+ .+|.+.-+-||+++..-
T Consensus 275 -l~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr 344 (450)
T PRK06002 275 -LAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDR 344 (450)
T ss_pred -HhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcH
Confidence 122354 336777666677777776653 2 3 4777776655544322 46777777789988743
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-05 Score=89.71 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=41.8
Q ss_pred hCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 149 INPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 149 ~~p~illLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 5899999999999999 78899999999999888999999999975
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=67.18 Aligned_cols=35 Identities=43% Similarity=0.757 Sum_probs=29.1
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 10 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 10 L~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.++++.+ |+++.|.||||||||||+++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556788876 5699999999999999999998544
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=71.22 Aligned_cols=49 Identities=33% Similarity=0.482 Sum_probs=38.1
Q ss_pred cCcccChHHH-HHHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 129 FVRGVSGGER-KRVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 129 ~~~~LSgGer-qRv~ia~~L~------~------~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
...++||||| ..+.++.+++ . .|.+++||||+++||+.....+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4578999999 4455544432 2 3799999999999999999999999875
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-06 Score=88.26 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC---ccCCc----cc---cccEEEE-----
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SL---KSKIGFV----- 71 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g---~~~~~----~~---~~~i~yv----- 71 (583)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4688888 99999999999999999999999999986532 3346777755 33321 11 1234555
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 118 (583)
+|++. +.+.+ +...+.-..+......+...+...++.+.+++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33333 333333222222111123456677888899999884
|
|
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=66.54 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHH-hhcchh--HHH---HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH--HH
Q 007952 326 WIQQYTILFRRGIKE-HRHDYF--SWL---RITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI--FT 397 (583)
Q Consensus 326 ~~~q~~~l~~R~~~~-~r~~~~--~~~---r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~--~~ 397 (583)
.++....|.+|.++. .|+..+ .|. =+++..+++++.|.++-+-+.+ --..--.|.+. +.|.+. ..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~--~~~~l~~G~~~-----w~f~~~~i~~ 88 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLN--FLAYLLAGLIL-----WFFFSEAISE 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHH-----HHHHHHHHHh
Confidence 345677788999986 465543 232 2344444555555554322111 11111223332 222221 12
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
+...+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.+ + .++......+.+..+.+.++|
T Consensus 89 ~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~ 162 (263)
T COG1682 89 GAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLG 162 (263)
T ss_pred HHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555432 278899999999998666666555544444444433 3 344444455566677777888
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcc
Q 007952 478 LAIGAIL---MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 552 (583)
Q Consensus 478 ~~i~~~~---~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~ 552 (583)
+++|+++ +|.... -+.++-+++..+|.+=+ .+|+-++|+.++||+.+-.|..=..-+.+..+ .
T Consensus 163 l~~a~l~v~fRD~~~i---~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~---------~ 230 (263)
T COG1682 163 LILASLGVRFRDLGQI---LGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP---------D 230 (263)
T ss_pred HHHHhHhhhcccHHHH---HHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc---------c
Confidence 8877765 454443 34444455556666544 78999999999999999999866555444332 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 553 FREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 553 ~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
+.+.....+..++..+++++..++.+++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556666667777777766654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-06 Score=89.44 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=68.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..... ..++.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 455555678999999999999999999999999654 568999998754322 234678999998887765 3444443
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 123 (583)
+.. +. ...........++.+.+...+|.+.
T Consensus 262 l~~----~~-~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 262 LWD----AE-DGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred ccC----ch-hhHHHhHHHHHHHHccCCCCCCCCC
Confidence 321 00 0011112234455565666666553
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=70.44 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCC
Q 007952 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 193 (583)
Q Consensus 138 rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~ 193 (583)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444555566678999999998775 66677788888888753 4778899988643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-06 Score=83.30 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=47.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccE----EEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~----I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
.+..+++|.||||||||||.+.|++.+. +.+|. |.+++.......+...+++++.+ ..+..++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 4567999999999999999999999764 44676 55555433322333456766543 3345666665555433
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=76.05 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCccccccccCccCcccChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 107 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~--ia~~L~~-~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.+.+.++..++.- -.+++ .+..+|+||++++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445556555431 11222 34568999999977 4444433 3444 399999999999999999988764
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0023 Score=64.18 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhhhhhccC--CCCChHHHHHHHHHHHHHHHHH
Q 007952 407 AMLSKERAADMY--------RLSAYFLARTTSDLPLNLVLPV---LFLVIVYFMAG--LRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 407 ~v~~rE~~~~~Y--------~~~ay~la~~l~~lP~~~~~~~---~~~~i~Y~~~g--l~~~~~~f~~~~~~~~l~~~~~ 473 (583)
..+.+||++|.. +...+.++|.++-+-+..+..+ ++.....+... -..+.+.++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 455666666653 4578899999888655443322 12222222211 1234556655555566677788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--ccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYF-VQEV--PVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 550 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~-i~~i--p~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~ 550 (583)
.++|.++|++.++...|..++... .+.++.|+- +.++ |++.+|+.|+||.+|-.+. ....+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~-~~g~i------------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDGLASLLWGGSAYTISELGLSYHYESI-SRGVI------------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHHHhhhcchhHHHHHHHcCHHHHHHHH-HcCcc-------------
Confidence 899999999998888876544332 222222221 3334 8889999999997764333 21111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 551 SGFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+.|+...+.+.+.+..++...+++
T Consensus 215 -~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 -DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1457777777777777777766643
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=87.37 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHH-CCcEEEEEecCCCh-------HHHhhcCeEEEEcCCe
Q 007952 149 INPSLLFLDEPTSG----LD-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 210 (583)
Q Consensus 149 ~~p~illLDEPtsg----LD-----~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~-------~i~~~~D~v~~L~~G~ 210 (583)
.+|+++++|.-++= +| ....++++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987641 11 2234566667777755 59999999996432 1466899999997654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.1e-06 Score=85.95 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=48.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc---CCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~---~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
.++||.||||||||||.++|.+.+...+.+|+|.+-+.+ .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999866432346776653332 222223335543 6666677778877776655443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00017 Score=72.10 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=33.8
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHH-CCcEEEEEecCCC
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAE-AGKTVVTTIHQPS 193 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tii~~~H~~~ 193 (583)
+.+..++++||+-.|=++.....+.. .++.+.+ .+..++++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999988877644 4555777 4888999999863
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-06 Score=79.00 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
|++++|+||||||||||++.|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25666666544
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=81.65 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~ 60 (583)
++|.+++|.||+||||||+|++|.+.+.. ++..+.|.....|+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 47899999999999999999999986532 12233555544443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.9e-06 Score=75.23 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.9
Q ss_pred CcccChHHHHHHHHHHHHH-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007952 130 VRGVSGGERKRVCIGNEII-----INPSLLFLDEPTSGLDSTTALRIVQMLQDI 178 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~-----~~p~illLDEPtsgLD~~~~~~i~~~l~~l 178 (583)
...++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 4467889888876665533 345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 583 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-21 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-20 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-19 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-19 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-18 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-18 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-18 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-18 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-18 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-18 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-18 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-17 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 8e-17 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-16 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-16 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-15 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-15 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-15 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-15 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-14 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-14 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-13 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-13 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-13 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-13 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-12 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-11 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-38 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-37 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-35 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-32 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-31 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-30 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-30 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-29 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-29 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-27 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-24 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-26 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-27 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-27 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 9e-27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-25 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-24 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-25 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-25 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-25 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-24 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-24 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-23 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 9e-23 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-22 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-22 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-20 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-19 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-19 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-19 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-19 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-19 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-18 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 5e-17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-16 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-16 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 9e-16 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-15 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 9e-14 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 9e-14 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-09 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 8e-38
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 66
L GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T + ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPHEVRK 88
Query: 67 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
I ++ ++ + ++ E L + A + E+ GL
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASS----SSEIEEMVERATEIAGLGEKIK--- 141
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 186 VTTIH 190
+ + H
Sbjct: 200 LVSSH 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-37
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN P +K +K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNGVPITK-VKG 78
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
KI F+ ++ ++ ++V++ L A L + + +D + + + +
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 185
+ +S G +RV + + +++N + LD+P +D + ++++ + +I E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 186 VTTIH 190
+++
Sbjct: 188 ISSRE 192
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-35
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 63
+ K IL I+ + G+ L G +G+GKTTLLN+L+ P G++ K
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE--PATSGTVNLFGKMPGKVG 89
Query: 64 -----LKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINE 114
++ IGFV+ + V + + A + + + + + A ++
Sbjct: 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLLKL 148
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+G+ I +S GE++RV I ++ P +L LDEP +GLD ++ +
Sbjct: 149 VGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 175 LQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L ++++ T + T H + F K++LL G + G + +
Sbjct: 204 LDSLSDSYPTLAMIYVT-HFIEE-ITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-32
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPT-AGEITIDGQPIDNIS 70
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL 115
++ +S+IGFV+QD + T++E LTY L T + A + +
Sbjct: 71 LENWRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 116 --GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
L +T +G RGV SGG+R+R+ I + NP +L LDE T+ LDS + +
Sbjct: 126 PDQL----NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SM 177
Query: 172 VQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 222
VQ D G+T + H RL DK+ + KG + GK +E +A
Sbjct: 178 VQKALDSLMKGRTTLVIAH----RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-31
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 66
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEVDY-TNEK 74
Query: 67 --------KIGFVTQDDVLFPHLTVKET----LTYAALLRLPNTLTKQQKEKRAIDVINE 114
K+GFV Q L P LT E + K++ ++R +++E
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-------PKKEAKERGEYLLSE 127
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
LGL D + +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 128 LGLG---DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 175 LQDIAEAGKTVVTTIHQP-----SSRLFHKFDKLIL 205
I E G ++V H+ + R D ++
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
+ IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALA 76
Query: 62 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 114
L+ ++G V QD+VL + ++ + ++ A P ++ ++ K A D I+E
Sbjct: 77 DPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN----PG-MSVEKVIYAAKLAGAHDFISE 130
Query: 115 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
L G +T++G +G SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 131 LREGY----NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE-H 182
Query: 171 IVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 222
++ G+TV+ H RL D++I++ KG ++ GK E ++
Sbjct: 183 VIMRNMHKICKGRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E + + +N G++LA++G +G GK+TLL+LL G + P G I +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPI-QGKIE---------VY 65
Query: 66 SKIGFVTQD-DVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
IGFV Q F +V + + + + + A+ ++ L L
Sbjct: 66 QSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAK 123
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA 181
+SGG+R+ + I I L+ LDEPTS LD ++ +L D+A
Sbjct: 124 REFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
TVV T HQP+ + +K +LL K FG+ +
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETRNIL 216
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-30
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 19/200 (9%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 63
E L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G + ++ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTND- 71
Query: 64 LKS---------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
L KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 115 LGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
L ER + +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 132 AELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 174 MLQDI-AEAGKTVVTTIHQP 192
+L+ + E GKTVV H
Sbjct: 187 LLKKLNEEDGKTVVVVTHDI 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 26/230 (11%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
L I + G AL+G +GSGK+T+ LL R + G I +
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAE--GDIKIGGKNVNK 85
Query: 62 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--G 116
S++S IG V QD +LF + T+K + Y L + K K + D I L
Sbjct: 86 YNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKK 144
Query: 117 LERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
DT++G +G+ SGGER+R+ I ++ +P ++ DE TS LDS T +
Sbjct: 145 W----DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 175 LQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 222
++D+ + +T++ H RL + +ILL KG ++ G + +
Sbjct: 198 VEDLRK-NRTLIIIAH----RLSTISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 68
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L +++Q V Y L + K +++N++
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWH---YLTLHQHD---------KTRTELLNDV-AGALA 115
Query: 122 DTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
G +SGGE +RV + + LL LDEP + LD + ++
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
L +++ G +V + H + L H + LL G +L G+ E +
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVL 221
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQVT 122
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 118
SL+S IG V QD VLF + T+ + + Y + + + + D I G
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 119 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
T +G RG+ SGGE++RV I I+ P ++ LDE TS LD++ I L
Sbjct: 181 ---RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA 234
Query: 177 DIAEAGKTVVTTIH 190
+ +T + H
Sbjct: 235 KVCA-NRTTIVVAH 247
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+ ++ +LN G + E+L +MG +G+GKTTL+ LL+G ++P G
Sbjct: 359 LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPD-EGQDIPK---L 413
Query: 61 SKSLKS-KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
+ S+K KI V LF + L + DV+ L +
Sbjct: 414 NVSMKPQKIAPKFPGTVRQLFFKKIRGQFLN----------------PQFQTDVVKPLRI 457
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ D V+ +SGGE +RV I + I + +DEP++ LDS + ++++
Sbjct: 458 DDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 178 -IAEAGKTVV 186
I KT
Sbjct: 513 FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-27
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL--------MEPTVGGSITYND----HPYSKS 63
+ PG+VL L+G +G GK+T L +L+G+ P I Y Y
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 64 LKSK-IGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+ I + + V +K + L L ++ + I L LE
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLEN-- 213
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ + +SGGE +R IG + + DEP+S LD L Q+++ +
Sbjct: 214 ---VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 182 GKTVV 186
K V+
Sbjct: 271 TKYVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
L G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++ +
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKVEWDL---------TV 419
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
+ Q TV E L+ +L + +++ LG+ D +
Sbjct: 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRNVE-D 471
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVV 186
SGGE +RV I ++ + + LDEP++ LD L + + ++ + E KT +
Sbjct: 472 L----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 5e-27
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYS 61
+ V G V+ ++GP+G+GKTT + +L+G+L+ E +
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 62 -------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
+ +I V + ++ + + L L K + + +V+ E
Sbjct: 163 ELQNYFERLKNGEIRPVVKP----QYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKE 215
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L LE + + +SGGE +RV I ++ F DEP+S LD L++ ++
Sbjct: 216 LELEN-----VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 175 LQDIAEAGKTVV 186
++ +A GK V+
Sbjct: 271 IRRLANEGKAVL 282
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-28
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 28/183 (15%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---Y 60
E L I + G+ +AL+G SGSGK+T+ +L++ R + G I + H Y
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID-EGHILMDGHDLREY 410
Query: 61 S-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 114
+ SL++++ V+Q+ LF + TV + YA +++Q + A+D IN+
Sbjct: 411 TLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINK 465
Query: 115 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ GL DT+IG GV SGG+R+R+ I ++ + +L LDE TS LD+ + R
Sbjct: 466 MDNGL----DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-R 517
Query: 171 IVQ 173
+Q
Sbjct: 518 AIQ 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+ L G + GEV+ ++GP+G GKTT + +L+G + EPT G I ++
Sbjct: 293 LVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKIEWD---- 346
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+ + Q TV E L+ +K +++ LG+
Sbjct: 347 -----LTVAYKPQYIKADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDL 394
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
D V +SGGE +RV I ++ + + LDEP++ LD L + + ++ + E
Sbjct: 395 YD-----REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449
Query: 181 -AGKTVV 186
KT +
Sbjct: 450 KNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM------EPTVGGSITYND----HPYSKSLK 65
V G V+ ++GP+G+GK+T + +L+G+L+ + G I Y + LK
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 66 -SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+I V + L P + + L K + + +V+ L LE +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIE---------LLKKADETGKLEEVVKALELENVLE 153
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E G
Sbjct: 154 -----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 183 KTVV 186
K+V+
Sbjct: 209 KSVL 212
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 7e-28
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHYL 91
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 117
+++ V Q+ +LF + +E + Y L T T ++ E A D I+ G
Sbjct: 92 HTQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 118 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
DT +G G SGG+R+ V + +I P LL LD TS LD VQ L
Sbjct: 147 ----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLRVQRL 198
Query: 176 QDIA--EAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 222
+ A +TV+ +L + ++ L +GS+ G + M
Sbjct: 199 LYESPEWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGTHLQLME 245
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-28
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 22/191 (11%)
Query: 1 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
+ L G GE++ ++GP+G GKTT +L G + GS+T
Sbjct: 275 IIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG-EITAD-EGSVTPEKQIL 332
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
S K + F D T L + +V L L R
Sbjct: 333 SY--KPQRIFPNYDG------------TVQQYLENASKDALSTSSWFFEEVTKRLNLHRL 378
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA- 179
+ S V +SGGE +++ I + L LD+P+S LD + + ++ +
Sbjct: 379 LE-----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 180 EAGKTVVTTIH 190
E H
Sbjct: 434 ERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-26
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQD- 74
+L ++G +G GKTT+L +L+G ++ + K + +I ++
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 75 --DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 130
+ L ++ + L+ LTK + + +V L + +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-----LWNKDA 136
Query: 131 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
+SGG +R+ + ++ + D+P+S LD + + + ++++ + K V+
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 28/183 (15%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---Y 60
+EK L+ ++ S+ G+ +AL+G SGSGK+T+ NL + R + GSI + H Y
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDY 410
Query: 61 S-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 114
+L+ V+Q+ LF + T+ + YAA T++Q ++ A++ I
Sbjct: 411 KLTNLRRHFALVSQNVHLF-NDTIANNIAYAAEG----EYTREQIEQAARQAHAMEFIEN 465
Query: 115 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ GL DT+IG G SGG+R+RV I ++ + +L LDE TS LD+ + R
Sbjct: 466 MPQGL----DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE-R 517
Query: 171 IVQ 173
+Q
Sbjct: 518 AIQ 520
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
+ EK L ++ +N GE L + G +GSGK+TLL +++G L+EPT G + Y+
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPT-SGDVLYDGERKKG 73
Query: 62 KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
++ IG Q +D F V + + +A + N + + +GL+
Sbjct: 74 YEIRRNIGIAFQYPEDQFF-AERVFDEVAFA----VKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 120 CQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
SF +SGGE++RV I + I+ P +L LDEP GLD +++++
Sbjct: 129 -------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ GKTV+ H + + H D++++L KG ++ G E
Sbjct: 182 EKWKTLGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRME 224
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 9e-27
Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 43/200 (21%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
E IL I S+ GE +A +G SG GK+TL+NL+ R + T G I + H
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKDFL 409
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTY------------AALLRLPNTLTKQQKEKRA 108
SL+++IG V QD++LF TVKE + AA K A
Sbjct: 410 TGSLRNQIGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAA------------KMANA 456
Query: 109 IDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
D I L G DT +G RGV SGG+++R+ I + NP +L LDE TS LD
Sbjct: 457 HDFIMNLPQGY----DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 165 STTALRIVQMLQDIAEAGKT 184
+ I + L +++ +T
Sbjct: 510 LESESIIQEALDVLSK-DRT 528
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 33/231 (14%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
E IL G+ V G+ +AL+G SG GK+T + L+ RL +P G ++ +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPL-DGMVSIDGQDIRTINV 459
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL- 115
+ L+ IG V+Q+ VLF T+ E + Y + +T + KE A D I +L
Sbjct: 460 RYLREIIGVVSQEPVLF-ATTIAENIRYG----RED-VTMDEIEKAVKEANAYDFIMKLP 513
Query: 116 -GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + +V
Sbjct: 514 HQF----DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 173 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKGSLLYFGKASEAMA 222
Q D A G+T + H+ S+ R D + G ++ G E M
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVR---NADVIAGFDGGVIVEQGNHDELMR 613
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L G++ V G+ LAL+G SG GK+T++ LL R +P GS+ + + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPM-AGSVFLDGKEIKQLNVQWL 1105
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 117
++++G V+Q+ +LF ++ E + Y ++ ++ KE I+ L
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYG---DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 118 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
+T +G +G SGG+++R+ I ++ P +L LDE TS LD+ + ++VQ
Sbjct: 1162 ----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEA 1213
Query: 176 QDIAEAGKTVVTTIH 190
D A G+T + H
Sbjct: 1214 LDKAREGRTCIVIAH 1228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+L GI + GEV+ ++GPSGSGK+T L NLL E G I +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----EDFDEGEIIIDGINLKAKDT 93
Query: 66 ------SKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGL 117
++G V Q LFPH+TV +T A + + P +++ E +A+++++++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 149
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 178 IAEAGKT--VVT 187
+A G T VVT
Sbjct: 205 LANEGMTMVVVT 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 8e-25
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
E+ L I VN GE + ++GP+GSGKTTLL +SG + P G+I N K
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--LLPY-SGNIFINGMEVRK 69
Query: 63 SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
+++ I + T + +TV + + L K ++++ L L
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLY--EEL-----KGLDRDLFLEMLKALKL---- 117
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
I + +S G+ V + P ++ LDEP +D+ I + +++
Sbjct: 118 GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--- 174
Query: 182 GKTVVTTIH 190
GK + H
Sbjct: 175 GKEGILVTH 183
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
S+ L GI ++ GEV A++G +G GK+TL +G +++P+ G I +++ P
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILKPS-SGRILFDNKPIDYS 75
Query: 62 ----KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINE 114
L+ IG V Q D+ LF +V + +++ N L + + KR + +
Sbjct: 76 RKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFG----AVNMKLPEDEIRKRVDNALKR 130
Query: 115 LGLERCQDTMIGGSFVRGV---SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
G+E +D + S G++KRV I +++ P +L LDEPT+GLD I
Sbjct: 131 TGIEHLKD--------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 172 VQMLQDI-AEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 219
+++L ++ E G T++ H + + D + ++ +G ++ G E
Sbjct: 183 MKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKE 230
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGSI 53
+L G++ G+V++++G SGSGK+T L N L G + + G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 54 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDV 111
D + L++++ V Q L+ H+TV E + A +L L K +RA+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----KHDARERALKY 136
Query: 112 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ ++G+ ER Q + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 171 IVQMLQDIAEAGKT--VVT 187
+++++Q +AE GKT VVT
Sbjct: 192 VLRIMQQLAEEGKTMVVVT 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 66
LN I+ S++PGE+L ++G SG GKTTLL L+G +P G I+ + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPD-SGEISLSGKTIFSKNTNLPV 77
Query: 67 ---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
++G++ Q+ VLFPHLTV + Y L Q+ +R ++ G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISE---- 130
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
+ G + +SGG+++R + + +P L+ LDEP S LD LR Q+ +D+ A +
Sbjct: 131 -LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--EQLR-RQIREDMIAALR 186
Query: 184 TV-VTTI 189
+ +
Sbjct: 187 ANGKSAV 193
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 4e-23
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIGFVTQ 73
+ L+GP+G+GK+ L L++G +++P G + N P + IGFV Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPE----RRGIGFVPQ 77
Query: 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 133
D LFPHL+V + Y L + + ++++R ++ +LG+ D +
Sbjct: 78 DYALFPHLSVYRNIAY-GLRNVE----RVERDRRVREMAEKLGIAHLLDRKP-----ARL 127
Query: 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV-VTTIH 190
SGGER+RV + ++I P LL LDEP S +D + +++++ + V +H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDL--KTK-GVLMEELRFVQREFDVPILH 182
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 9e-23
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 62
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G + P
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQ-- 85
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
K +G V Q+ LF H+TV + +++ LR + K + + R +++ + LE
Sbjct: 86 --KRNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRLES--- 137
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
F +SGG+++RV + + P +L DEP + +D
Sbjct: 138 --YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKS 63
L+ ++ V GE ++GP+G+GKT L L++G P G I + P
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRILLDGKDVTDLSPE--- 70
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
K I FV Q+ LFPH+ VK+ L + +R+ K + KR +D +L +E D
Sbjct: 71 -KHDIAFVYQNYSLFPHMNVKKNLEFG--MRMK----KIKDPKRVLDTARDLKIEHLLDR 123
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
+SGGE++RV + ++ NP +L LDEP S LD + + ++ K
Sbjct: 124 NP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP--RTQ-ENAREMLSVLHK 175
Query: 184 TV-VTTIH 190
+T +H
Sbjct: 176 KNKLTVLH 183
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L + G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KAD-EGRVYFENKDITNKEPAELY 80
Query: 69 --GFV-T-QDDVLFPHLTVKE-----------TLTYAALLRLPNTLTKQQKE--KRAIDV 111
G V T Q +TV E + + + +++E ++A +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK---KWIPKEEEMVEKAFKI 137
Query: 112 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
+ L L D +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 138 LEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 172 VQMLQDIAEAGKTVV 186
+ ++ G T +
Sbjct: 193 FNHVLELKAKGITFL 207
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----HPYSKSLK 65
L+ + ++ GE ++GPSG+GKTT + +++G L P+ G + ++D +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 66 SK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ IG V Q L+P+LT E + + L ++K++ KR +V L + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
R +SG +++RV + ++ +PSLL LDEP S LD+ +R + E
Sbjct: 136 HFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA--RMR-DSARALVKEVQ 187
Query: 183 KTV-VTTI 189
+ VT +
Sbjct: 188 SRLGVTLL 195
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 35/188 (18%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ + K L
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KDL 86
Query: 65 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQ--QKEKRAIDVIN 113
++ G F+ Q V P ++ + L A N + Q+ D +
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL-----NAVRSYRGQETLDRFDFQD 141
Query: 114 ELGLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLD 164
+ E+ + + G SGGE+KR N+I ++ P L LDE SGLD
Sbjct: 142 LME-EKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSGLD 196
Query: 165 STTALRIV 172
AL++V
Sbjct: 197 -IDALKVV 203
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 1e-19
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 23/186 (12%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 63
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPAHVI 78
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE----LGLER 119
+ I V + +FP LTV E L A R ++ KR ++ I L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KDKEGIKRDLEWIFSLFPRLKERL 133
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
Q +GG+ +SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 134 KQ---LGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 180 EAGKTV 185
+ G T+
Sbjct: 187 QEGTTI 192
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 64
+ + IL G+ V GEV ALMGP+G+GK+TL +L+G G I + +++
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----ENI 69
Query: 65 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 115
+++ G F+ Q V P +T+ L A K +E + ++
Sbjct: 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL-----Q--AKLGREVGVAEFWTKV 122
Query: 116 GLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDST 166
+ + S++ G SGGE+KR NEI ++ P+ LDE SGLD
Sbjct: 123 K-KALELLDWDESYLSRYLNEGFSGGEKKR----NEILQLLVLEPTYAVLDETDSGLD-I 176
Query: 167 TALRIV 172
AL++V
Sbjct: 177 DALKVV 182
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 62
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKI 422
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 114
SL+S IG V QD +LF TVKE L Y T ++ K + I
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHSDHFIKH 476
Query: 115 L--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171
L G +T++ + +S G+R+ + I + NP +L LDE TS +D+ T I
Sbjct: 477 LPEGY----ETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-19
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 29/229 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 61
+L+G+ SV PG ++A++G +GSGK+TL+NL+ RL++P G + ++
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKL 412
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTY----AALLRLPNTLTKQQKEKRAIDVINEL-- 115
K L+ I V Q+ VLF T+KE L + A + Q D I L
Sbjct: 413 KDLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQ----IHDFIISLPE 467
Query: 116 GLERCQDTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
G D+ + GG SGG+++R+ I ++ P +L LD+ TS +D T RI+
Sbjct: 468 GY----DSRVERGGR---NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 174 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L+ I Q DK+++L +G + FG E +
Sbjct: 521 GLKR--YTKGCTTFIITQKIPTALLA-DKILVLHEGKVAGFGTHKELLE 566
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 62
LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELTTLSESELT 101
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ +IG + Q L TV + L L N K + ++R ++++ +GL D
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 181
S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI
Sbjct: 159 -----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 182 GKTVVTTIHQ 191
G T++ H+
Sbjct: 214 GLTILLITHE 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 5e-17
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSKS 63
+ ++ V GE + L+GPSG GKTT L +++G L EP+ G I D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIF 75
Query: 64 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
+ K I V Q L+PH+TV + + + L+L +Q+ ++R +V LGL
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLRKV-PRQEIDQRVREVAELLGLTEL 132
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ R +SGG+R+RV +G I+ P + +DEP S LD+ LR V+M ++ +
Sbjct: 133 LNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA--KLR-VRMRAELKK 184
Query: 181 AGKTVVTTI 189
+ + T
Sbjct: 185 LQRQLGVTT 193
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 3e-16
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
K +LN + + GP+G GK+TL+ ++ ++ +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----GFPTQEE------- 494
Query: 66 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ +V D D +V + + + + ++ D + E G D M
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKLIEFGFT---DEM 541
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
I + +SGG + ++ + ++ N +L LDEPT+ LD+ +V L
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160
+ K + + LGL+ ++ S +RG+SGG++ ++ + P L+ LDEPT
Sbjct: 873 RPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Query: 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 215
+ LD + + + L++ V+ H S+ +++ + G + G
Sbjct: 930 NYLDRDSLGALSKALKEF---EGGVIIITH--SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
K + I + +A++GP+G+GK+TL+N+L+G L PT G H
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSG---EVYTHE--- 734
Query: 63 SLKSKIGFVTQDDVLFPHLTVKET 86
+I ++ Q + +T
Sbjct: 735 --NCRIAYIKQHAFAHIESHLDKT 756
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 64
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G + L
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE------L 70
Query: 65 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K +G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLL 127
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ + +SGG+++RV I ++ P +L LDEP S LD+ LR +++ ++
Sbjct: 128 N-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA--LLR-LEVRAELKRL 179
Query: 182 GKTVVTTI 189
K + T
Sbjct: 180 QKELGITT 187
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 51/310 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 64
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTE--GEIQIDGVSWDSITLEQW 92
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--- 121
+ G + Q +F T ++ L PN + I + +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PN-------AAHSDQEIWK-VADEVGLRS 136
Query: 122 ---------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
D ++ GG +S G ++ +C+ ++ +L LDEP++ LD T +
Sbjct: 137 VIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-Q 192
Query: 171 IVQMLQDIAE--AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 228
I++ + + + A TV+ + + L + D+ +++ + + + E Y +
Sbjct: 193 IIR--RTLKQAFADCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 229 CSPQIAMNPAEFL-LDLANGNLHDVSVPSELQDRVQTE---NSENDTANGKPTPAIVHEY 284
+ I FL + + + V V + +R Q S + + I E+
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEH 308
Query: 285 LVEAYETRVA 294
L+ + V
Sbjct: 309 LLPSDIADVI 318
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 9e-16
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 33/192 (17%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-----NDHPYSKS 63
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G I + ND P
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPT-SGEIYFDDVLVNDIP---- 71
Query: 64 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
K +G V Q+ L+PH+TV E + + LR +K + EKR +++ +L ++
Sbjct: 72 --PKYREVGMVFQNYALYPHMTVFENIAFP--LRARRI-SKDEVEKRVVEIARKLLIDNL 126
Query: 121 QDTMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
D R +SGG+++RV + ++ P +L DEP S LD+ LR + M +
Sbjct: 127 LD--------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLR-MIMRAE 175
Query: 178 IAEAGKTVVTTI 189
I + + T
Sbjct: 176 IKHLQQELGITS 187
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 64
+N + ++ GE L L+GPSG GKTT L +++G L EPT G G L
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTY------L 78
Query: 65 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
K I V Q ++PH+TV E + + L++ K + +KR L +E
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFP--LKIKKF-PKDEIDKRVRWAAELLQIEELL 135
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR V M +I +
Sbjct: 136 NRY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLR-VAMRAEIKKL 187
Query: 182 GKTVVTTI 189
+ + T
Sbjct: 188 QQKLKVTT 195
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 27/181 (14%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSK 62
+ I ++ GE + +GPSG GK+TLL +++G +E G + ND P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPA- 73
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ +G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 74 --ERGVGMVFQSYALYPHLSVAENMSFG--LKL-AGAKKEVINQRVNQVAEVLQLAHLLD 128
Query: 123 TMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
R +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+
Sbjct: 129 --------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEIS 177
Query: 180 E 180
Sbjct: 178 R 178
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 51/236 (21%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
S +L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 95
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+I F +Q+ + P T+KE N + E R VI LE D
Sbjct: 96 KHSGRISFCSQNSWIMP-GTIKE-----------NIIGVSYDEYRYRSVIKACQLEE--D 141
Query: 123 ---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR- 170
++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 142 ISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 171 ----IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ +++ A KT + + K DK+++L +GS ++G SE
Sbjct: 199 FESCVCKLM-----ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-12
Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 42/232 (18%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
+L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 65
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 121
+I F +Q + P T+KE N + E R VI LE
Sbjct: 66 KHSGRISFCSQFSWIMP-GTIKE-----------NIIFGVSYDEYRYRSVIKACQLEE-- 111
Query: 122 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
D ++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 112 DISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 171 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
I + A KT + + K DK+++L +GS ++G SE
Sbjct: 169 IFESCVCKLMANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 218
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 44/234 (18%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
+ + LNGIT S+ G ++A++G G GK++LL+ L + V G +
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHV--------- 62
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 121
++K + +V Q + + +++E N L Q +E VI L
Sbjct: 63 AIKGSVAYVPQQAWIQ-NDSLRE-----------NILFGCQLEEPYYRSVIQACALLP-- 108
Query: 122 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
D T IG +GV SGG+++RV + + N + D+P S +D+
Sbjct: 109 DLEILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 171 IVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
I + + KT + H S + D +I++ G + G E +A
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQELLA 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 134 SGGERKRVC------IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
SGGER + + + SLL LDEPT LD +++ +++ + V+
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 188 TIHQPSSRLFHKFDKLILLGKG 209
H L D +I +
Sbjct: 310 VSHDEE--LKDAADHVIRISLE 329
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 21/144 (14%)
Query: 74 DDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMIGGSFVR 131
+ L + A + + E+ + + + G ER +
Sbjct: 8 EAAL--SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL------- 58
Query: 132 GVSGGERKRVCIGNEI------IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 185
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 59 --SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 186 VTTIHQPSSRLFHKFDKLILLGKG 209
+ H L D +I +
Sbjct: 117 ILVSHDEE--LKDAADHVIRISLE 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 60/424 (14%), Positives = 126/424 (29%), Gaps = 122/424 (28%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLN--LLSGRLMEPTVGG----SITYNDHPYS--KSLKSK 67
+ P + + + G GSGKT + LS ++ ++ + P + + L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DV-----INELGLE 118
+ + + + L ++ L K + + + +V N L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL- 264
Query: 119 RCQDTMI---GGSFVRGVSGGERKRVCIGNEII-INP----SLL--FLDEPTSGL---DS 165
C+ ++ +S + + + + + P SLL +LD L
Sbjct: 265 SCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225
TT R + + IAE+ + + T K +I + SL + +E F
Sbjct: 324 TTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVL-EPAEYRKMFD 376
Query: 226 SIG-------------------CSPQIAMNPAEFLLD--LANGN-------LHDVSVPSE 257
+ M L L +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------ 430
Query: 258 LQDRVQTENSENDTANGKPTPAIVHEYLVEAYET-------------------------- 291
+ ++ + EN+ A +H +V+ Y
Sbjct: 431 IYLELKVKL-ENEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 292 RVAEN-EKKKLMAPIPLDEE-IKAKVSSPKRNWGASWIQQYTIL--------FRRGIKEH 341
+ E+ E+ L + LD ++ K+ R+ +W +IL ++ I ++
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 342 RHDY 345
Y
Sbjct: 538 DPKY 541
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.89 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.83 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.77 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.72 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.7 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.69 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.67 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.66 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.62 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.61 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.59 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.58 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.57 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.55 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.54 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.52 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.52 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.52 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.5 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.49 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.46 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.43 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.4 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.4 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.39 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.39 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.38 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.36 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.35 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.33 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.33 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.3 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.29 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.28 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.28 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.24 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.18 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.14 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.13 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.13 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.11 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.11 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.08 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.01 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.0 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.98 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.91 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.9 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.87 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.86 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.84 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.83 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.83 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.82 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.81 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.79 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.66 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.61 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.58 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.55 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.53 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.52 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.51 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.51 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.38 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.34 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.33 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.25 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.24 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.22 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.21 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.2 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.19 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.18 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.14 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.13 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.13 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.1 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.09 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.09 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.07 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.04 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.03 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.99 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.97 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.93 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.87 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.79 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.78 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.76 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.76 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.74 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.67 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.61 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.61 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.6 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.56 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.53 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.52 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.51 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.5 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.47 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.45 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.42 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.42 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.35 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.31 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.3 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.29 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.29 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.29 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.27 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.27 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.24 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.23 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.23 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.21 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.2 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.19 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.17 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.13 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.01 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.99 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.96 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.94 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.88 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.88 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.87 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.84 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.81 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.8 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.7 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.69 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.65 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.63 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.58 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.58 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.55 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.53 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.52 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.52 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.5 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.5 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.5 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.48 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.44 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.4 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.36 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.36 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.35 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.35 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.34 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.32 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.31 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.22 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.19 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.18 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.11 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.09 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.06 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.06 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.96 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.94 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.89 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.89 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.89 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.85 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.84 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.84 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.84 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.8 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.75 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.75 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.73 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.64 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.64 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.63 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.63 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.61 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.58 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.56 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.56 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.52 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.51 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.51 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.51 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.49 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.48 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.38 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.37 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.35 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.35 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.34 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.34 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.33 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.32 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.3 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.3 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.26 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.24 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.21 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.2 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.2 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.19 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.19 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.18 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.15 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.13 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.13 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.1 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.1 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.1 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.09 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.09 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.08 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.08 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.06 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.05 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.04 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.03 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.02 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.01 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.0 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.0 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.98 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.94 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.93 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.91 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.91 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.91 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.89 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.89 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.87 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.87 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.85 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.84 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.83 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.82 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.8 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.78 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.78 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.77 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.76 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.75 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.75 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.75 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.72 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.72 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.71 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.7 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.67 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.64 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.63 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.61 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.61 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.6 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.6 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.6 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.59 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.59 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.56 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.56 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.55 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.46 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.46 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.44 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.43 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.42 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.42 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.41 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.41 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.4 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.4 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.39 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.38 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.37 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.36 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.34 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.33 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.3 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.29 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.28 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.28 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.28 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.28 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.27 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.27 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.24 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.24 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.24 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.23 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.22 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.21 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.19 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.19 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.19 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.17 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.15 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.15 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.13 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.12 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.11 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.08 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.08 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.07 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.05 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.05 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.05 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.04 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.04 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.04 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.02 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.99 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.99 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.96 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.93 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.93 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.93 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.92 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.91 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.86 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.86 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.85 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.82 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.8 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.79 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.77 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.76 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.72 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.72 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.7 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.68 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.65 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.65 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.63 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.61 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.61 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.61 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.61 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.6 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.58 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.56 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.49 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.38 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.37 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.34 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.3 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.28 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.24 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 93.24 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.24 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.22 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.21 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.11 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.1 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.01 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.97 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.95 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 92.9 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.89 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.82 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.75 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 92.65 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.55 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.5 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.47 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.43 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 92.24 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.23 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.18 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.94 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.93 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.91 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.84 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.78 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.01 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.64 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.57 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 91.49 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.48 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 91.43 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 91.22 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 91.17 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 91.15 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.07 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 91.03 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 90.92 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 90.9 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=408.58 Aligned_cols=205 Identities=25% Similarity=0.422 Sum_probs=185.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
.+.+|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..|+.||||+|++.++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 3579999999999999999999999999999999999653 679999999998752 2357899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.++...+ ..++++.+++++++++.+||.+..++ ++.+|||||||||+|||||+.+|++|+|||
T Consensus 118 ~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999987654 34677788899999999999887665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.|+++++.
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999764 999999999964 577899999999999999999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=386.69 Aligned_cols=205 Identities=29% Similarity=0.455 Sum_probs=178.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++... .++.+|||+|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 569999999999999999999999999999999999653 6799999999887421 134699999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+.+||+||+.++...+.....+.++..+++.++++.+||.+.. +. ++.+|||||||||+|||||+.+|++|+||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999986644222345667778899999999998643 43 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+|||+.++.++++.|++++++ |+|||++||++. +.++||++++|++|+++..+++++.
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999765 999999999974 4589999999999999999988764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=407.84 Aligned_cols=208 Identities=28% Similarity=0.485 Sum_probs=188.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|.+
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTS
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCC
Confidence 456789999999999999999999999999999999999763 679999999998753 3457799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 tV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 91 SVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp CHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999987654 35677788899999999999887765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+..+.++.+.|+++.++ |+|+|++|||+. ++.++||+|++|++|+++..|+++++.+
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999765 999999999964 5889999999999999999999998753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=393.24 Aligned_cols=206 Identities=29% Similarity=0.509 Sum_probs=181.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDD-VLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~-~~~ 78 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. + ..++.+|||+|++ ..+
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 3459999999999999999999999999999999999653 67999999999873 1 2467899999986 334
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
..+||+||+.|+...+ ..+.++..++++++++.+||++..+. ++.+|||||||||+||+||+.+|++|+|||
T Consensus 98 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp CSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTS-----BGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999987543 34677778889999999999887765 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+++.|++++ ++|+|||++||++.. +.++||+|++|++|++++.|+++++.+
T Consensus 170 Pts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999997 569999999999764 778999999999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=389.25 Aligned_cols=206 Identities=28% Similarity=0.510 Sum_probs=181.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~~~~ 78 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. . ..++.+|||+|++.++
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 45679999999999999999999999999999999999753 67999999998873 1 2356799999999999
Q ss_pred CCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 79 PHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 79 ~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+.+||+||+.++. ..+ ..+.++.+++++++++.+||++..++ .+.+|||||||||+||+||+.+|++|+||
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----ChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999864 322 23455566789999999999877665 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999878999999999964 577899999999999999999998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=406.71 Aligned_cols=208 Identities=27% Similarity=0.469 Sum_probs=184.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC----Cc--cccccEEEEccCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SK--SLKSKIGFVTQDDVL 77 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~----~~--~~~~~i~yv~Q~~~~ 77 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++ .. ..++.+|||+|+..+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcC
Confidence 456789999999999999999999999999999999999653 6799999999886 21 245779999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
||.+||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+||
T Consensus 92 ~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999975432 23456677889999999999987775 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+|||+..+.++.+.|+++. +.|+|+|++|||.. ++.++||+|++|++|+++..|+++++..
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999888875 46999999999964 5788999999999999999999998753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=390.08 Aligned_cols=206 Identities=28% Similarity=0.484 Sum_probs=181.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhcc
Confidence 45679999999999999999999999999999999999753 679999999988751 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||++. .++ .+.+|||||||||+|||
T Consensus 95 i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 95 LTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTS-----CGGGSCHHHHHHHHHHH
T ss_pred eEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcC-----CcccCCHHHHHHHHHHH
Confidence 999999999999999999999864 322 23455566789999999999887 665 46799999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999888999999999964 577899999999999999999998874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=399.56 Aligned_cols=207 Identities=25% Similarity=0.491 Sum_probs=185.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++++|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 55679999999999999999999999999999999999753 679999999988753 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 104 v~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999999987653 24566677889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|++++++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999765 999999999964 5788999999999999999999998753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=376.97 Aligned_cols=200 Identities=31% Similarity=0.450 Sum_probs=176.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------cc-ccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------LK-SKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~~-~~i~yv~Q~~~ 76 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++... .+ +.++||+|++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92 (224)
T ss_dssp TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc
Confidence 45679999999999999999999999999999999999653 6799999999887431 22 57999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++. +.+|||||||||+||+||+.+|++|+|
T Consensus 93 l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 93 LIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred cCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999876543 234455667899999999998877654 579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||||+|||+.++..+++.|++++++|+|||++|||+. .+ +.||++++|++|++++.|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999877999999999964 34 8899999999999999886
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=384.09 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=182.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++.+++.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 45679999999999999999999999999999999999753 679999999988753 2457799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++.+++++++++.+||++..++. +.+|||||||||+||+||+.+|++|+|||||+
T Consensus 104 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 104 QGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp BHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999999875432 123445567789999999998877654 57999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999878999999999964 4677899999999999999999988754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=386.80 Aligned_cols=207 Identities=26% Similarity=0.410 Sum_probs=179.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+|||+|++.+++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 95 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCC
Confidence 45679999999999999999999999999999999999763 679999999988743 13457999999999999
Q ss_pred CCCHHHHHHHHHHc-CCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 80 HLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 80 ~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
.+||+||+.++... +... ..+.++.+++++++++.+||++..++. +.+|||||||||+||+||+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkQrv~iAraL~~ 170 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMT 170 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----chhCCHHHHHHHHHHHHHHc
Confidence 99999999986432 1110 012344567789999999998777654 57999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +.++||++++|++|++++.|++++
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999998889999999999764 678999999999999999999988
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=399.09 Aligned_cols=208 Identities=28% Similarity=0.517 Sum_probs=185.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 90 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCC
Confidence 345679999999999999999999999999999999999753 679999999998753 2357799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 91 TVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp CHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999987543 23566677889999999999987765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++.++.+.|++++++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999765 999999999964 5778999999999999999999998753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=399.00 Aligned_cols=207 Identities=29% Similarity=0.501 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 45679999999999999999999999999999999999753 679999999987632 23567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++|++||+||+.|+...+ ..++++.+++++++++.+||++..+. ++.+|||||||||+|||||+.+|++|+|
T Consensus 92 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987653 24566677889999999999887765 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999765 999999999964 5788999999999999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=399.46 Aligned_cols=207 Identities=28% Similarity=0.517 Sum_probs=183.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999875432 23445556789999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999765 999999999964 5778999999999999999999998753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=398.85 Aligned_cols=207 Identities=28% Similarity=0.514 Sum_probs=183.9
Q ss_pred cccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC
Q 007952 5 EEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~--iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~ 75 (583)
+++. +|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+.
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 4456 9999999999999999999999999999999999653 679999999987632 2467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++|++||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+
T Consensus 92 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999875432 24566777889999999999887765 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++.++.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.+
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999764 999999999964 5788999999999999999999998753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=384.68 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=179.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 356789999999999999999999999999999999999653 678999999998753 24567999999999888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CCCE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p~i 153 (583)
.+||+||+.++.... ...+.+++++++++.+||.+..++. +.+|||||||||+|||||+. +|++
T Consensus 99 ~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 899999999875432 1223456789999999998877654 57999999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||||+|||+.++.++++.|++++++ |+|||++|||+. ++.++||++++|++|++++.|+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999865 579999999964 577899999999999999999998863
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=378.53 Aligned_cols=205 Identities=26% Similarity=0.425 Sum_probs=177.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-----ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-----LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-----~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+. .++.+|||+|++.+++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCC
Confidence 45679999999999999999999999999999999999653 6799999999987431 2456999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++.... .+.++.+++++++++.++ |.+..++ .+.+|||||||||+|||||+.+|++|+|||
T Consensus 95 ~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 95 ELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp TSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999999863211 122344567888999994 8766654 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 Pts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 166 PSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999878999999999964 477899999999999999999988764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=398.61 Aligned_cols=207 Identities=26% Similarity=0.478 Sum_probs=177.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 99 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 100 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 100 VYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp HHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999864322 24566677889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++..
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999765 999999999964 5778999999999999999999998753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=391.84 Aligned_cols=202 Identities=30% Similarity=0.511 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++ +|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++|
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSC
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCC
Confidence 445 9999999999999999999999999999999999753 679999999998753 24567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+. .+++ ++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 89 v~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 89 VKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDR-----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTS-----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9999999865431 1112 678999999999987775 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++.++.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999764 999999999964 578899999999999999999999874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=371.37 Aligned_cols=199 Identities=27% Similarity=0.460 Sum_probs=175.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+|+|+|+++++ |+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 9999999999999999999999753 679999999988743 345679999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.++...+ .....+++++++++.+||.+..++. +.+||||||||++|||||+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98853221 1222356789999999998876654 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999764 999999999964 477899999999999999999998875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=377.08 Aligned_cols=204 Identities=26% Similarity=0.451 Sum_probs=177.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCC-CCCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDD-VLFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~-~~~~~lTv~ 84 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 579999999999999999999999999999999999653 679999999988753 3467799999995 566779999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
||+.++.... .+.++.+++++++++.+||. +..++. +.+|||||||||+||++|+.+|++|+|||||+|
T Consensus 98 enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864321 11222346688999999998 776654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++..+++.|++++++|+|||++||++.. +.++||++++|++|++++.|+++++.+
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998779999999999764 667899999999999999999988764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=373.84 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-----ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-----LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-----~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++... .++.++||+|++.+++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 45679999999999999999999999999999999999621236799999999987431 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCcc-cChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVRG-VSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-LSgGerqRv~ia~~L~~~p~illLD 157 (583)
.+||+||+.+............++..++++++++.+|| .+..++. +.+ ||||||||++||+||+.+|++|+||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLD 168 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLD 168 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999986531111112334455778999999999 4666654 457 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhh
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||+|||+.++..+++.|++++++|+|||++||++. .+... ||++++|++|++++.|+++.
T Consensus 169 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 169 ETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999777999999999975 45566 59999999999999999873
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=379.05 Aligned_cols=208 Identities=24% Similarity=0.381 Sum_probs=174.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCCCC-
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDDVL- 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~~~- 77 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. . ..++.+|||+|++.+
T Consensus 32 ~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 45679999999999999999999999999999999999763 67899999998875 2 245779999999754
Q ss_pred -CCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 78 -FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 78 -~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+.+||+||+.++...... .....++..++++++++.+||++..++. +.+|||||||||+|||||+.+|++|+
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLl 184 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLI 184 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3457999999875311000 0111234456789999999998777654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEE--EEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||++++|++|++++.|+++++
T Consensus 185 LDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999998779999 99999975 46788999999999999999998875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=369.28 Aligned_cols=218 Identities=28% Similarity=0.351 Sum_probs=179.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cc-cccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL-KSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~-~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++.. .. ++.++||+|++.+++
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 4568999999999999999999999999999999999964223578999999987642 11 345999999999999
Q ss_pred CCCHHHHHHHHHH-cC---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAAL-LR---LPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++ .+. +|||||||||+|||||+.+|++
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS-----BTTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999999987542 11 111234455567899999999996 45554 344 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcCC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 229 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 229 (583)
|+|||||+|||+.++..+++.|++++++|+|||++||++.. +... ||++++|++|++++.|+++++.. .+..|+
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 99999999999999999999999997779999999999753 5555 89999999999999999988653 344443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=365.53 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=173.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +. |+|.++|+++.+ ..++.++||+|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 68999999999999999999999999999999999753 57 999999988642 245679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC-------EEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-------LLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~-------illL 156 (583)
+||+.++. .+. .+ +++++++++.+||++..++ .+.+||||||||++||++|+.+|+ +|+|
T Consensus 91 ~e~l~~~~---~~~-~~----~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQ---HDK-TR----TELLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTC---SST-TC----HHHHHHHHHHTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhh---ccC-Cc----HHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 99998752 111 11 4568899999999887665 357999999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999877999999999965 46689999999999999999998876
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=362.37 Aligned_cols=197 Identities=29% Similarity=0.426 Sum_probs=170.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|. .++.+|||+|++.+++.+||+|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------ECSCEEEECSCCCCSSCCBHHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------EeccEEEEcCCCccCCCCCHHH
Confidence 5689999999999999999999999999999999999753 6789998 2467999999999999999999
Q ss_pred HHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 86 TLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 86 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|+.++...... .....++.+++++++++.+||.+..++. +.+|||||||||+||+||+.+|++|+|||||+|||
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99986432110 0011234456789999999998877654 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 165 STTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.++..+++.|++++++ |+|||++|||+. ++.++||++++|++|+ ++.|+++++
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999877 999999999964 4678999999999999 999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=364.78 Aligned_cols=201 Identities=30% Similarity=0.516 Sum_probs=170.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 5679999999999999999999999999999999999753 679999999988753 24567999999998887 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
||+||+.++. + ..+ .++++++++.+++.+..+... -++.+.+|||||||||+|||||+.+|++|+
T Consensus 98 tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll 168 (247)
T 2ff7_A 98 SIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168 (247)
T ss_dssp BHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998742 1 112 234667788888865544321 123467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+++++.
T Consensus 169 LDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999995 59999999999763 4 469999999999999999998874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=373.11 Aligned_cols=202 Identities=30% Similarity=0.514 Sum_probs=169.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+.+.+|+|+||+|++||++||+||||||||||+|+|+|... +.+|+|.+||+++.. .+++.+|||+|++.+|+
T Consensus 65 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~- 141 (306)
T 3nh6_A 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN- 141 (306)
T ss_dssp TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-
Confidence 35679999999999999999999999999999999999653 679999999998753 35778999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.||+||+.++.. .... +++++.++..++.+ -.++.+| +...+||||||||++|||||+.+|++
T Consensus 142 ~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 142 DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 599999987532 1122 23445555555543 2345554 45678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||||+|||+.++..+++.|+++.+ ++|+|+++|+++. +. .||+|++|++|++++.|+++++.+
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999864 7999999999754 54 499999999999999999999865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=369.05 Aligned_cols=202 Identities=31% Similarity=0.497 Sum_probs=168.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 679999999999999999999999999999999999753 678999999988742 24567999999998887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++... ....++ ....++++++.+ |+.+..+. .+.+|||||||||+|||||+.+|++|+
T Consensus 109 v~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq~QRv~lAraL~~~p~lll 179 (271)
T 2ixe_A 109 FRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLLI 179 (271)
T ss_dssp HHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 111111 122356677777 66655443 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+++.|+++++ +|+|||++||++. .+ ..||++++|++|+++..|+++++.+
T Consensus 180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999975 34 4599999999999999999988754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=363.29 Aligned_cols=204 Identities=31% Similarity=0.510 Sum_probs=173.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 45689999999999999999999999999999999999653 578999999988742 35678999999998887
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.||+||+.++.. + ... +++++++++.+++.+..+.... ++.+.+||||||||++|||+|+.+|++|
T Consensus 90 ~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 90 GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 599999987421 1 112 2457788999999876654321 2346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.+
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999997 6999999999975 34 5699999999999999999988753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=351.17 Aligned_cols=188 Identities=23% Similarity=0.387 Sum_probs=161.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
++|+|+|+++++||+++|+||||||||||||+|+|... +.+|+|.++|+++. ..++.++||+|++.+++.+||+||+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl 99 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYL 99 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHH
Confidence 79999999999999999999999999999999999753 67999999998875 4567899999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+....+.. . .+ +++++++++.+||++. +. .+.+||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 100 ~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~ 168 (214)
T 1sgw_A 100 KAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168 (214)
T ss_dssp HHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred HHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 987644211 1 11 4568889999999876 54 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+..+++.|++++++|+|||++||++.. +...+|+++++ +|+|
T Consensus 169 ~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 169 KHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 999999999998779999999999764 66778887755 4554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=356.22 Aligned_cols=199 Identities=30% Similarity=0.473 Sum_probs=166.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... + +|+|.++|+++.+ ..++.++||+|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 469999999999999999999999999999999999763 4 7999999988742 24678999999999886 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++. . ... ++++.+.++.+++.+. .++.++ +.+.+|||||||||+|||||+.+|++|+
T Consensus 109 v~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGK----L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTC----T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccC----C-CCC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999998742 1 112 2345566666665432 333332 3578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+++.|+++++ |+|||++||++.. + +.||++++|++|+++..|+++++..
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999965 8999999999764 4 5699999999999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=354.00 Aligned_cols=193 Identities=24% Similarity=0.273 Sum_probs=168.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEE-EEccCCCCCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIG-FVTQDDVLFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~-yv~Q~~~~~~~lTv~ 84 (583)
+.+|+|+|++++ ||+++|+||||||||||+|+|+|.. +.+|+|.++|+++.+ ..++.++ ||+|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 679999999999 9999999999999999999999964 468999999987642 1256799 99999887 78999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
||+.+....+ .. .+++++++++.+||. +..++ .+.+||||||||++||+||+.+|++|+|||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRR-----KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGS-----BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999876432 11 135688999999998 76665 45799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC-eEEEEcCCeEEEEcChhhHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.++..+++.|+++++ |||++||++. ++.+.|| ++++|++|++++.|+++++.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999998854 9999999975 4678999 99999999999999998875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=344.34 Aligned_cols=190 Identities=29% Similarity=0.457 Sum_probs=156.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| +++|++|++.+++. ||+|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~e 87 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQFSWIMPG-TIKE 87 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---------CEEEECSSCCCCSB-CHHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---------EEEEEecCCcccCC-CHHH
Confidence 5689999999999999999999999999999999999753 6799999998 49999999998885 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.++.. ... .+.++.++.+++.+.. ++.++ +.+.+||||||||++|||||+.+|++|+|||
T Consensus 88 nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDE 156 (229)
T 2pze_A 88 NIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 156 (229)
T ss_dssp HHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HhhccCC------cCh----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9987421 111 1233444445554322 22222 3467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++. +++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.
T Consensus 157 Pts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 157 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999997 45654 4899999999964 34 469999999999999999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=343.46 Aligned_cols=194 Identities=25% Similarity=0.438 Sum_probs=155.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| .++||+|++.+ +.+||+|
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS---------CEEEECSSCCC-CSEEHHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC---------EEEEEcCCCcC-CCcCHHH
Confidence 4689999999999999999999999999999999999653 6799999998 39999999865 5789999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH---HHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAID---VINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.++... ..+. .+++.+ +.+.+++.+. .++.+ ++.+.+||||||||++|||||+.+|++|+|||||+
T Consensus 85 nl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 85 NILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp HHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred HhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99875311 1111 111111 2233333221 12222 24578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|+ +++ +|+|||++||++.. + +.||++++|++|++++.|+++++.+
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999995 443 48999999999864 4 5799999999999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=369.15 Aligned_cols=201 Identities=23% Similarity=0.381 Sum_probs=170.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|++|++||+++|+||||||||||||+|+|.. + .+|+|.++|+++.. ..++.+|||+|++.+|+
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4578999999999999999999999999999999999965 3 68999999998753 24678999999999998
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+||+||+.+.. ... +++++++++.++|.+..+.+... +...+|||||||||+|||||+.+|++|
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996321 112 34678899999998776654321 112339999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||||||+.++.++.+.|+++. +++|+|++|||+. ....||+|++|++|+++..|+++++.+
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999963 456799999999999999999998754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=377.45 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=172.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+++.++||+|++.+++. |
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-T 432 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-C
Confidence 679999999999999999999999999999999999653 679999999998753 356789999999999985 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. + ..+ +++++++++.+++.+. .++.+| +...+||||||||++|||||+.+|++|+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 433 VANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999987521 1 122 2446677777777543 345554 3468899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++.|+++++.+
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999875 9999999999864 4 5799999999999999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=379.49 Aligned_cols=201 Identities=32% Similarity=0.516 Sum_probs=169.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||++||+||||||||||+|+|+|... +++|+|.+||+++.+ .+++++|||+|++.+|+.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 4679999999999999999999999999999999999653 679999999998753 357789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.++. + ..+. +++.+.++..++. +-.++.+| +...+||||||||++|||||+.+|++|
T Consensus 430 tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 430 TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998752 1 1222 2344555555443 33456665 446789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||||||+.++..+.+.++++. +++|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 47999999999864 4 5699999999999999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=379.68 Aligned_cols=202 Identities=28% Similarity=0.462 Sum_probs=168.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.+||+++.+ .+|++++||+|++.+|+.
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 431 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc
Confidence 35679999999999999999999999999999999999653 679999999998753 357789999999999975
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
||+||+.++. + ..+.++ +.+.++..++ .+-.++.+| +...+||||||||++|||||+.+|++
T Consensus 432 -tv~eni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 432 -TIKENLKWGR----E-DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp -EHHHHHTTTC----S-SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred -cHHHHHhccC----C-CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 9999998742 1 122322 2333333333 333455554 45779999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++.++.+.|+++. +|+|+|+++|+++. .+.||+|++|++|++++.|+++|+.+
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999985 58999999999753 46899999999999999999999865
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=378.19 Aligned_cols=201 Identities=29% Similarity=0.474 Sum_probs=171.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+++.+|||+|++.+++. |
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-T 432 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-c
Confidence 679999999999999999999999999999999999653 678999999988742 357789999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. + ..+ +++++++++.+++.+. .|+.+| +...+||||||||++|||||+.+|++|+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 433 IANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhc-CCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999988531 1 122 3446777777777543 344554 3467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++.|+++++.+
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999865 9999999999753 4 5799999999999999999998753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=377.31 Aligned_cols=201 Identities=33% Similarity=0.507 Sum_probs=167.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+|++++||+|++.+|+.
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 443 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST- 443 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-
Confidence 4679999999999999999999999999999999999653 679999999998753 357789999999999874
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.++. + ..+. +++.+.++..++.+ -.++.+| +...+||||||||++|||||+.+|++|
T Consensus 444 tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 444 TVKENLKYGN----P-GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp BHHHHHHSSS----T-TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhCCHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1122 22344454444432 3345444 345789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999986 59999999999874 4 5599999999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=338.68 Aligned_cols=189 Identities=29% Similarity=0.460 Sum_probs=153.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| +++||+|++.+++. ||+|
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---------CEEEECSSCCCCSS-BHHH
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---------EEEEEeCCCccCcc-cHHH
Confidence 3679999999999999999999999999999999999653 6799999998 49999999998885 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+. +. . ... .++++.++.+++.+.. ++.++ ..+.+||||||||++|||+|+.+|++|+|||
T Consensus 118 nl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 31 1 111 1233445555554322 22222 2357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.+ ++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999974 5554 4899999999974 34 569999999999999999998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=394.71 Aligned_cols=204 Identities=29% Similarity=0.507 Sum_probs=174.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
.++++|+|+|++|+|||.+||+||||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 34579999999999999999999999999999999998653 678999999999864 578999999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.|+. .|...+.+ ++.+.++..++ ++-.||.+|. ...+||||||||++|||||+++|+|
T Consensus 1168 -TIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1168 -SIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp -EHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred -cHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCE
Confidence 9999998752 12233433 34555555554 4556888874 4578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+|+++|+++++++
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998865 48999999999875 46799999999999999999999985
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=385.38 Aligned_cols=202 Identities=29% Similarity=0.475 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
.++++|+|+|+++++||.+||+||||||||||+++|.|... +.+|+|.+||.++++ .+|++||||+|++.+|..
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhhcccccCCcceeeCC
Confidence 46789999999999999999999999999999999999653 679999999998863 467889999999999976
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.|+. + ..+.+ ++.++++..+ |++-.+|.+|. ...+||||||||++||||+++||+|
T Consensus 507 -TI~eNI~~g~----~-~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 507 -TIEENISLGK----E-GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp -EHHHHHHTTC----T-TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred -chhHHHhhhc----c-cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCE
Confidence 9999999862 1 23333 3444444443 35566888885 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|++.|+++|+.+
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999864 8999999999864 57899999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=377.05 Aligned_cols=203 Identities=30% Similarity=0.493 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||++||+||||||||||+++|+|... +++|+|.+||+++.+ .+|+.+|||+|++.+++.
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 3579999999999999999999999999999999999653 679999999998753 457789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||+||+.++.. ..+.++..+.+ ++.++. +.+..++.+| +...+||||||||++|||||+.+|+||+|
T Consensus 479 ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 479 TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--cccccccccc-CCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998731 12333332222 222333 3344567776 34678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998875 59999999999753 4 5599999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=369.44 Aligned_cols=202 Identities=26% Similarity=0.487 Sum_probs=168.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.+||+++.+ .+|++++|||||+.+++ .|
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~t 1122 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CS 1122 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SB
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-cc
Confidence 469999999999999999999999999999999999653 679999999998753 35788999999998886 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. ....+.++. .+.++..+ +.+..||.+|. ...+||||||||++|||+|+.+|++|+
T Consensus 1123 i~eNi~~~~~---~~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1123 IAENIAYGDN---SRVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp HHHHHTCCCS---SCCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred HHHHHhccCC---CCCCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987421 112333333 23333333 34455777763 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999998854 59999999999874 5 5699999999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.21 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=162.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.+ ...+||++|+....+.+||.|++.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~ 439 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLS 439 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------eeEEEEEecCccCCCCCcHHHHHH
Confidence 5788888899999999999999999999999999653 57899875 246999999988778899999887
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
..... .....++++++++.+|+.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 440 ~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 440 KIDSS-------KLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHHHH-------HHHCHHHHHHTHHHHTCTTTTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhhcc-------CCCHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 64110 00123567889999999877665 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
..+++.|+++++ +|+|||++|||+. .+..+||++++|++ |+++..|+++++..
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999974 6999999999964 57789999999986 88889999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=331.97 Aligned_cols=190 Identities=25% Similarity=0.334 Sum_probs=161.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +.+|+|.+ ...++||+|+....+.+||.|++.
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~ 369 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW---------DLTVAYKPQYIKADYEGTVYELLS 369 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------CceEEEEecCCcCCCCCcHHHHHH
Confidence 5777888889999999999999999999999999653 57899875 246999999988778899999886
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
....... ...++++++++.+|+.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 370 ~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 370 KIDASKL-------NSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHHHHHH-------TCHHHHHHTTTTTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhhccCC-------CHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 5311100 113467889999999876655 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
..+++.|+++++ .|.|||++|||+. ++.++||++++|++ |+++..|+++++..
T Consensus 438 ~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 438 LAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999974 5999999999964 57789999999986 78889999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=325.68 Aligned_cols=191 Identities=23% Similarity=0.267 Sum_probs=159.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.+++ +.++|++|+......+||+|++.
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~ 352 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLE 352 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--------eeeEeechhcccccCCCHHHHHH
Confidence 4666788899999999999999999999999999653 6789998764 35899999977777899999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+..... .. .....++++++.++|.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 353 ~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 353 NASKDA----LS--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp HHCSST----TC--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred Hhhhhc----cc--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 742111 10 112457788999999877665 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 221 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 221 (583)
..+++.|+++++ .|+|||++|||+. ++..+||+|++|++ |.....+++.++.
T Consensus 422 ~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 422 YIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999975 5899999999964 57789999999986 5666777766543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.83 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=141.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCc-------ccEEEECC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPTV-------GGSITYND 57 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl---------------------~~l~g~~~~~~~-------~G~I~~~g 57 (583)
.+.+|+||||+|++||+++|+||||||||||+ +++.|... +. .|.|.++|
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~--~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK--PDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC----------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc--CCccceeccccceEecC
Confidence 45789999999999999999999999999998 77777543 22 56777888
Q ss_pred ccCCccccccEEEEccCCCC-------------------CCCCCHHHHHHHHHHcCCCCCCCHHHHHH------HHHHHH
Q 007952 58 HPYSKSLKSKIGFVTQDDVL-------------------FPHLTVKETLTYAALLRLPNTLTKQQKEK------RAIDVI 112 (583)
Q Consensus 58 ~~~~~~~~~~i~yv~Q~~~~-------------------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~------~v~~~l 112 (583)
.+.....++.+++|+|...+ ++.+||+||+.+......... ..+..+. ...+++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFL 186 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHH
Confidence 76544344556666664332 467899999987532221110 0000001 112458
Q ss_pred HHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q 007952 113 NELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189 (583)
Q Consensus 113 ~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~ 189 (583)
+.+||.+. .++ .+.+|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++|
T Consensus 187 ~~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 187 QNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 88999764 344 467999999999999999999998 9999999999999999999999999998899999999
Q ss_pred cCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 190 HQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 190 H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
||+. . ...||++++| ++|++++.|+++++.
T Consensus 262 Hd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 9964 3 4569999999 899999999998875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=326.30 Aligned_cols=192 Identities=25% Similarity=0.288 Sum_probs=161.0
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l 81 (583)
+.+++|+|+++++| |+++|+||||||||||+|+|+|... +++|+. + .+..++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---cCCcEEEecccccccCCc
Confidence 35789999999999 7899999999999999999999763 567752 1 134699999997766667
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+|++... .+. ... ..+.++++++.++|.+..++ .+.+|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 221 111 12456789999999887765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|++++ +.|+|||++|||+. ++..+||+|++|++ |+++..|+|++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999986 45999999999964 57789999999986 89999999998865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=328.59 Aligned_cols=188 Identities=22% Similarity=0.322 Sum_probs=157.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lT 82 (583)
.+++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+.... .+++|++|+. .+++.+|
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSB
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--eeEEEEcccccccccCCc
Confidence 345789999999999999999999999999999999995 222 34333222 2478999984 6788999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|.|++.+ .. . .. +++++++++.+|+. +..++ .+.+||||||||++||++|+.+|++|||||||+
T Consensus 513 v~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~-----~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAM-----PISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHS-----BGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999975 11 1 11 46688999999995 45554 356999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++ .|+|||++||++. .+.+.||++++|++|+++ +.|++++...
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999988 5899999999964 577899999999999997 7899988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.98 Aligned_cols=182 Identities=26% Similarity=0.369 Sum_probs=150.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE---------EECCccCCc------cccccEEEEc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHPYSK------SLKSKIGFVT 72 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I---------~~~g~~~~~------~~~~~i~yv~ 72 (583)
.+|+|+| ++++||+++|+||||||||||+|+|+|... +++|++ .++|.++.. ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 999999999999999999999999999753 567885 356665421 1134588999
Q ss_pred cCCCCCCC---CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+....+. .|+.|++... . ..++++++++.+||++..++ .+.+|||||||||+||++|+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~-----~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLER-----EIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTS-----BGGGCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhC-----ChhhCCHHHHHHHHHHHHHhc
Confidence 97544332 3899987531 0 12357889999999876665 467999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|++|+|||||++||+.++..+++.|++++++|+|||++||++. .+.++||+|++|++|.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 99999999999999999999999999999888999999999964 5778999999998653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.09 Aligned_cols=182 Identities=26% Similarity=0.388 Sum_probs=150.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE---------EECCccCCc------cccccEEEEc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHPYSK------SLKSKIGFVT 72 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I---------~~~g~~~~~------~~~~~i~yv~ 72 (583)
.+|+|+| ++++||+++|+||||||||||||+|+|.+. +++|++ .++|.++.. ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 999999999999999999999999999763 567885 456665421 1234588999
Q ss_pred cCCCCCC---CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+....+ ..||.|++... . ..++++++++.+||++..++. +.+|||||||||+||+||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----LHQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----GGGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 8743322 23999998631 0 123478899999998877654 57999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||+|++|+++.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999888999999999964 5778899999998653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.35 Aligned_cols=196 Identities=27% Similarity=0.438 Sum_probs=149.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh----------------------CCCCCCCcccEEEECCccCCccc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS----------------------GRLMEPTVGGSITYNDHPYSKSL 64 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~----------------------g~~~~~~~~G~I~~~g~~~~~~~ 64 (583)
+.+|+|||++|++||+++|+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 45799999999999999999999999999998764 111 12467888887653110
Q ss_pred ---------------------------------------------cccEEEEccCCCCCC--------------------
Q 007952 65 ---------------------------------------------KSKIGFVTQDDVLFP-------------------- 79 (583)
Q Consensus 65 ---------------------------------------------~~~i~yv~Q~~~~~~-------------------- 79 (583)
.+..|+++|+..++|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 011244444433322
Q ss_pred ------------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHH
Q 007952 80 ------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 80 ------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
.+||+||+.+... . ...+++.+.++.+||.+. .+ ..+.+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~------~---~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS------I---PKIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT------C---HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH------h---hhHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHH
Confidence 4799999987431 1 123456678888998642 23 3567999999999999999
Q ss_pred HHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcCh
Q 007952 147 IIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKA 217 (583)
Q Consensus 147 L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 217 (583)
|+.+| ++|+|||||+|||+.++..+++.|++++++|+|||++|||+. . .+.||+|++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99987 599999999999999999999999999988999999999975 3 4679999999 89999999999
Q ss_pred hhHH
Q 007952 218 SEAM 221 (583)
Q Consensus 218 ~~~~ 221 (583)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-33 Score=320.79 Aligned_cols=192 Identities=22% Similarity=0.379 Sum_probs=150.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCC----CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL----FPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~----~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|. ..++|++|+... ....|
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t 756 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-------CRIAYIKQHAFAHIESHLDKT 756 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT-------CCEEEECHHHHHHGGGCTTSC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc-------cceEeeccchhhhhhcccccC
Confidence 679999999999999999999999999999999999653 67899999863 248999997521 23468
Q ss_pred HHHHHHHHHHcC------------CC----------------------------------------------------CC
Q 007952 83 VKETLTYAALLR------------LP----------------------------------------------------NT 98 (583)
Q Consensus 83 v~e~l~~~~~~~------------~~----------------------------------------------------~~ 98 (583)
++|++.+..... .. ..
T Consensus 757 ~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~ 836 (986)
T 2iw3_A 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836 (986)
T ss_dssp HHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEE
T ss_pred HHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccc
Confidence 888876532100 00 00
Q ss_pred C--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccccccCccCcccChHHHHHHH
Q 007952 99 L--------T--------------------------KQQKEKRAIDVINELGLERC--QDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 99 ~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~~ig~~~~~~LSgGerqRv~ 142 (583)
. + +....++++++++.+||.+. .+. .+++|||||||||+
T Consensus 837 lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQkQRVa 911 (986)
T 2iw3_A 837 MMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQKVKLV 911 (986)
T ss_dssp CCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHHHHHH
T ss_pred cchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHHHHHH
Confidence 0 0 00013567889999999742 343 35799999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 143 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||++|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++||++. .+.++||++++|++|+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999988765 679999999964 5678999999999999988774
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-32 Score=301.47 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=138.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-----------EECCccCCcc------ccccEEEEccC----C
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS------LKSKIGFVTQD----D 75 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-----------~~~g~~~~~~------~~~~i~yv~Q~----~ 75 (583)
.++||++||+||||||||||+|+|+|.+. +++|+| .++|+++... ....+....|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 45999999999999999999999999763 568988 5777665211 11224444443 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++. .||+|++... . ..++++++++.+|+.+..++. +.+|||||||||+||+||+.+|++|+
T Consensus 100 ~~~~-~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 4888866421 0 123477899999998877654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|..+
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 9999999999999999999999976 999999999964 688899999999876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=300.05 Aligned_cols=200 Identities=27% Similarity=0.475 Sum_probs=154.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhCCCCCC----Ccc------cEEEECCccCCcc----
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 63 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl---------~~l~g~~~~~----~~~------G~I~~~g~~~~~~---- 63 (583)
+..|+|||++|++|++++|+||||||||||+ +.+.+..... ..+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3569999999999999999999999999997 4555432110 112 2355555443210
Q ss_pred -----------------------------------------ccccEEEEccCCCCCC-----------------------
Q 007952 64 -----------------------------------------LKSKIGFVTQDDVLFP----------------------- 79 (583)
Q Consensus 64 -----------------------------------------~~~~i~yv~Q~~~~~~----------------------- 79 (583)
..+..|++.|+..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776665
Q ss_pred ---------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 80 ---------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 80 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.+||.|++.|... . ...+++.++|+.+||.... + ++.+.+|||||||||.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 3688888887421 1 1235677899999996422 1 235679999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 151 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
| ++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999988999999999974 34 669999999 899999999999985
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=298.18 Aligned_cols=187 Identities=25% Similarity=0.308 Sum_probs=143.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-----------EECCccCCc----ccccc--EEE
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSK--IGF 70 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-----------~~~g~~~~~----~~~~~--i~y 70 (583)
..|++++ .+++||+++|+||||||||||||+|+|.+. +++|+| .+.|.++.. ...+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3567766 689999999999999999999999999763 568987 233333211 01111 233
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH
Q 007952 71 VTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 144 (583)
Q Consensus 71 v~Q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia 144 (583)
.+|.... -+..++.+++.... . +..++++++++.+||.+..++. +.+|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHHH
Confidence 4443211 12235666654321 0 1135688999999998877754 579999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 145 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 145 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++..++|+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999999999999999888999999999964 5788999999999876555
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=300.24 Aligned_cols=198 Identities=27% Similarity=0.432 Sum_probs=153.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-CCC---------CCCC---ccc------EEEECCccCCccc----
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL---------MEPT---VGG------SITYNDHPYSKSL---- 64 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-g~~---------~~~~---~~G------~I~~~g~~~~~~~---- 64 (583)
..|+|||++|++||++||+|+||||||||++.|. |.+ ..+. ..| .|.++|.++.+..
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4699999999999999999999999999999853 110 1110 123 4888888763210
Q ss_pred -------------------cccEEEEccCCCCC----------------------C------------------------
Q 007952 65 -------------------KSKIGFVTQDDVLF----------------------P------------------------ 79 (583)
Q Consensus 65 -------------------~~~i~yv~Q~~~~~----------------------~------------------------ 79 (583)
.+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 13357777753221 1
Q ss_pred --------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 80 --------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 80 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.+||.|++.|... . . ..+++.++++.+||.. ..+. .+.+|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcC
Confidence 4678888876321 1 1 1234578999999976 3443 4679999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 151 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
| ++|+|||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 34 689999999 689999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=295.90 Aligned_cols=198 Identities=27% Similarity=0.444 Sum_probs=150.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhCCC-------CC----------------CCccc-------EEEEC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRL-------ME----------------PTVGG-------SITYN 56 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~-l~g~~-------~~----------------~~~~G-------~I~~~ 56 (583)
..|+|||++|++||++||+|+||||||||++. |+|.+ .. .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 46999999999999999999999999999996 66422 10 11356 78999
Q ss_pred CccCCcccc-----------------------ccEEEEcc----------------------CCCCCC------------
Q 007952 57 DHPYSKSLK-----------------------SKIGFVTQ----------------------DDVLFP------------ 79 (583)
Q Consensus 57 g~~~~~~~~-----------------------~~i~yv~Q----------------------~~~~~~------------ 79 (583)
|.++....+ +..||.++ +-.+++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 887642111 11122222 111222
Q ss_pred --------------------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHH
Q 007952 80 --------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGER 138 (583)
Q Consensus 80 --------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGer 138 (583)
.+|+.|++.|.. . . ...+++.++++.+||... .+ ..+.+||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGek 736 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLG-----QPATELSGGEA 736 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCccccc-----CCcccCCHHHH
Confidence 245555554421 1 1 123467899999999763 23 34679999999
Q ss_pred HHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCC
Q 007952 139 KRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKG 209 (583)
Q Consensus 139 qRv~ia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G 209 (583)
|||.||++|+.+ |++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCC
Confidence 999999999996 7999999999999999999999999999988999999999964 45 789999999 799
Q ss_pred eEEEEcChhhHH
Q 007952 210 SLLYFGKASEAM 221 (583)
Q Consensus 210 ~iv~~G~~~~~~ 221 (583)
++++.|+++++.
T Consensus 815 ~Iv~~g~~~el~ 826 (842)
T 2vf7_A 815 RLVAQGTPAEVA 826 (842)
T ss_dssp SEEEEECHHHHT
T ss_pred EEEEEcCHHHHH
Confidence 999999998864
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=266.92 Aligned_cols=204 Identities=16% Similarity=0.218 Sum_probs=147.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC------------------------------------CCcc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVG 50 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~ 50 (583)
..+++++|+++++| +++|+|||||||||||++|.+.... .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 9999999999999999999764421 1236
Q ss_pred cEEEECCccCCc----cc-cccEEEEccCCCCCCCCCHHHHHHHHHHcC-----------------------CCCCC---
Q 007952 51 GSITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLR-----------------------LPNTL--- 99 (583)
Q Consensus 51 G~I~~~g~~~~~----~~-~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~-----------------------~~~~~--- 99 (583)
|++.+||++++. .. +..+++++|++.++.. +..+...|.-... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998763 22 3448999999876543 5554444321110 00000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCcccc----------------c---cccC--
Q 007952 100 -T------------------------------KQQKEKRAIDVINELGLERCQD----------------T---MIGG-- 127 (583)
Q Consensus 100 -~------------------------------~~~~~~~v~~~l~~lgL~~~~~----------------~---~ig~-- 127 (583)
. .+...+.+.+.++.+++.+..- . .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 0011234556667776653110 0 0100
Q ss_pred ----ccCcc-cChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 128 ----SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 128 ----~~~~~-LSgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..++. +|||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||++||++ ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 12223 6999999999999999999 9999999999999999999999999998 599999999997 356889
Q ss_pred CeEEEE----cCCeEEEEc
Q 007952 201 DKLILL----GKGSLLYFG 215 (583)
Q Consensus 201 D~v~~L----~~G~iv~~G 215 (583)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-31 Score=290.93 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=148.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-E-EEECCccCCccccccEEEEccCCC---CCCCCCHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKSLKSKIGFVTQDDV---LFPHLTVK 84 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~-I~~~g~~~~~~~~~~i~yv~Q~~~---~~~~lTv~ 84 (583)
++++|+++++|++++|+||||||||||+|+|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchh
Confidence 357899999999999999999999999999999653 5789 9 999983 2567999999984 45567999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH--HHhCCCE----EEEeC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE--IIINPSL----LFLDE 158 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~--L~~~p~i----llLDE 158 (583)
||+ |+....... . ..+++.++++.+|+++..+ +.+|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 988 643211110 0 1233556778888876554 46899999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC--h---HHHhhcCe-----EEEEc-CCeEEEEcChhhH
Q 007952 159 -PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS--S---RLFHKFDK-----LILLG-KGSLLYFGKASEA 220 (583)
Q Consensus 159 -PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 220 (583)
||++||+. ...+.+.+++ .|+|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555554443 3789999999976 1 45578999 99999 99999 9998765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-26 Score=238.22 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.4
Q ss_pred ccCcccChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+.+||||||||++||++|+ .+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ..+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 457799999999999999999 699999999999999999999999999999888999999999974 367899
Q ss_pred eEEEEcCCeEEE
Q 007952 202 KLILLGKGSLLY 213 (583)
Q Consensus 202 ~v~~L~~G~iv~ 213 (583)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-28 Score=239.67 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=102.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---ccccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~~~~~~i~yv~Q~~~~~~~ 80 (583)
.+++.+|+|+ ++||+++|+||||||||||+|+|+|. . +++|+|.. .++. ...++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 4567799996 89999999999999999999999996 3 56898842 2111 23467799999976
Q ss_pred CCHHHHH-HHHH----HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 81 LTVKETL-TYAA----LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 81 lTv~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+||+ .+.. .... ... .++++++++. |+ |||||++|||+|+.+|++|+
T Consensus 76 ---~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp -------CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEE
T ss_pred ---HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEE
Confidence 4444 2210 1110 000 1234555543 22 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|||||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 128 LDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999999 899999999998 6689999 999964
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=231.12 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=74.5
Q ss_pred cCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE-
Q 007952 129 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL- 203 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v- 203 (583)
.+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|+|||++||++. +.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 45799999999999999997 5789999999999999999999999999985 4899999999953 57889987
Q ss_pred -EEEcCCe-EEEEcChhhHH
Q 007952 204 -ILLGKGS-LLYFGKASEAM 221 (583)
Q Consensus 204 -~~L~~G~-iv~~G~~~~~~ 221 (583)
++|.+|+ .+.....++..
T Consensus 293 ~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEESSSCEEEEECCC----
T ss_pred EEEEeCCEEEEEEEEcchhh
Confidence 7888874 45555555543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-26 Score=214.09 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=100.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCC-CCCCCHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL-FPHLTVKETLTYA 90 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~-~~~lTv~e~l~~~ 90 (583)
|+|+++++||+++|+||||||||||+|++.+ |...+++.. ..|+++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d~-------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSDF-------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHHH-------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccHH-------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999664 111122111 12566776421 00001111111
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 166 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~---- 166 (583)
..... ....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 64 ---------------~~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11111 223344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 167 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 167 ------------~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
...++.+.|++++++|.|+|++||++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558999999999877999999999964
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-27 Score=251.16 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=135.6
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccc
Q 007952 7 KDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge--------------------~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~ 66 (583)
+.+|+|+|+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.+ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e-
Confidence 468999999999999 999999999999999999999653 57899999997653 1
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH--HHHHHHHH
Q 007952 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCIG 144 (583)
Q Consensus 67 ~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG--erqRv~ia 144 (583)
.+|++|++ .++.+|+.|++.+.. + +.+++++++.+++.+... . +. +||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-F-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-E-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-e-----EE-eCCCCccHHHHHHH
Confidence 27899985 577889998875431 1 124678899999876522 1 22 9999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----cEEEEEecCCCh-HHHhhcCeE
Q 007952 145 NEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 203 (583)
Q Consensus 145 ~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~~H~~~~-~i~~~~D~v 203 (583)
++|+. +|++++|||||+|||+.++.++++.++++. +.| .+|++++|+... .+.+++|++
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 333 678899998653 255566654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=206.35 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=102.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
.++|+||||||||||+|+|+|.+. |.++|.+..+ ..++.+||++|+. ++.+++ + +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~---- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK---- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh----
Confidence 589999999999999999999652 3344433211 3456799999975 222322 1 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 170 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~-----L~~~p~illLDE--PtsgLD~~~~~~ 170 (583)
+... +... +.++..||||||||++||++ ++.+|++++||| ||++||+.....
T Consensus 63 ------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 63 ------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0000 0111 23467899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCcEEEEEec--CCChHHHhhcCeEEEEcCCeEEE
Q 007952 171 IVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 171 i~~~l~~l~~~g~tii~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
+.+.+++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9988876 4777888887 224556677887 5677765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-27 Score=231.12 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=120.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+.+.+++| .++++||+++|+||||||||||+|+|+|... ...+.+.+.+.+.....++.++|++|++..++.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 45678888 7999999999999999999999999999653 2223222222222222356799999998888888887
Q ss_pred HHHHHHHHcCC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 85 ETLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 85 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|++........ ....++++.++++++. ++.+|+.+..+. .++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77632110000 0012344555556555 455555444443 345677 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 156 LDEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 156 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++||+. ++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 99999998 78899999999999975 5899999999964 6889999999985
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-26 Score=237.55 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=121.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE- 85 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e- 85 (583)
+.+|+|+|++|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.+++. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I--------------~~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV--------------LSFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------------ECGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------------EEEecCccccccc-cHHHH
Confidence 45899999999999999999999999999999999954 6888 3567888877764 7776
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+.. ..+. .+.+.++.+ |.+..+ ...|||||||| ||+|+.+|+||+ ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 765521 1111 345556654 443333 35899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhc
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 227 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 227 (583)
.++..+.. .+|++. ..+.+|+| +|++|++++.|+++++..+|..+
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 99988862 188865 35789999 99999999999999986666543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-24 Score=219.27 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=132.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCC-CC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDV-LF 78 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~-~~ 78 (583)
++++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 357899999999999999999999999999999753 4689999999876431 1 346999999988 89
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illL 156 (583)
|.+||+|++.++.... . ...+++.+|+.+..+. .+.+|| |||++||++++.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~--------d~~lldt~gl~~~~~~-----~~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----Y--------DVVLCDTSGRLHTNYS-----LMEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----C--------SEEEECCCCCSSCCHH-----HHHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----C--------cchHHhcCCCCcchhH-----HHHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 9999999998864211 0 0134567787765554 356899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhhcCeEEEEcCCeE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 211 (583)
| ||+|||+.++ ++++.+ .|.|+|++||... +...+..+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999865 345553 5899999999422 122344567888888854
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=225.51 Aligned_cols=110 Identities=25% Similarity=0.380 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 104 KEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 104 ~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
..++++ .++.+||.+. .+. .+.+|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|++
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 444554 5788999754 343 46799999999999999999999 59999999999999999999999999998
Q ss_pred CCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 181 AGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 181 ~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
.|.|||+++|++. +.+.+|+|++| ++|++++.|+++++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999999999963 55789999999 799999999998754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-23 Score=214.66 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCC-CCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDV-LFP 79 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~-~~~ 79 (583)
+++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46899999999999999999999999999999763 4689999999886431 1 346999999988 899
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLD 157 (583)
.+|++|++.++.... .. ..+++.+|+.+..+. .+.+|| |||++||++++.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~-----~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYS-----LMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHH-----HHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhh-----HHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 999999998864211 00 134566787765554 356899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhhcCeEEEEcCCeE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 44543 4899999999421 122344567877777753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-24 Score=215.40 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=95.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 100 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 100 (583)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999653 578999999988754 345779999999999999999999988743221 111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.+.+.+.++ .+..+. ...+||||||||+++||+++. ++++|||+.|||+.. .+.++++++
T Consensus 80 ----~~~i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhh-----hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 122333332 222232 245899999999999999775 999999999999987 556666666
Q ss_pred CCcEEEEEecCC
Q 007952 181 AGKTVVTTIHQP 192 (583)
Q Consensus 181 ~g~tii~~~H~~ 192 (583)
. ++||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999873
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-21 Score=199.68 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=70.1
Q ss_pred ccCcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|+|||++||++ ++.+.||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 356789999999 56777888889999999999999999999999999999987789999999994 4678999
Q ss_pred eEEEEc
Q 007952 202 KLILLG 207 (583)
Q Consensus 202 ~v~~L~ 207 (583)
+++.|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-21 Score=202.19 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CccCc-ccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 007952 127 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 196 (583)
Q Consensus 127 ~~~~~-~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 196 (583)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34566 79999999999999999 8999999999999999999999999998874 799999994 32
Q ss_pred HhhcCeEEEEcCCeEEEEcChhhH
Q 007952 197 FHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 197 ~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-23 Score=223.10 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=141.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCCc---------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK---------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~~---------~~~~~i~yv~Q 73 (583)
++++|+++ +++++||+++|+||||||||||+++|+|... ++.|.|.++|+ ++.+ .+++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 46799999 9999999999999999999999999999653 56899999998 4422 24577999999
Q ss_pred C-CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 74 D-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 74 ~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
+ +..++.+||.+|+.+.+.... .-+ .++.. .+ .....+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~------------------~~~-~~v~~-~l--d~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFR------------------DRG-QHVLL-IM--DSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH------------------TTT-CEEEE-EE--ECHHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH------------------hCC-CCHHH-HH--HhHHHHHHHH-HHHHHH---hCCCc
Confidence 5 566778899999987653210 000 01100 01 1245799999 999999 88888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+ |+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...+|++++|.+|+++..|++++.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 8 999999999999999999876 3 74 9999999986 367999999999999999988765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-22 Score=210.11 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=106.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++++|+.+++|++++|+||||||||||+|+|+|... +.+|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999653 578999999864211 1223344332
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
.++.+.|+.+.+.+.|+|+|+|+++ ..+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654458999999976 5678999999988754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-25 Score=217.93 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=109.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~~l 81 (583)
+.-|+|+|+++++|++++|+||||||||||+|+|+|.. + |+|.+ |.+... ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999954 2 89999 765421 2356789999987666543
Q ss_pred C-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHH-----HHHHHhCCCEE
Q 007952 82 T-VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 154 (583)
Q Consensus 82 T-v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~i-----a~~L~~~p~il 154 (583)
+ +.+++.+. ..... ...+ .+.++++++...+. .+ ...+|||||||++| +++++.+|+++
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-----il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-----LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-----EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-----EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 2 11111110 00000 0111 12456666653321 11 14799999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+|||||+++|..+...+.+.|+++.+ ++| ++| + ..||.|++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~ 192 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIIND 192 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECC
Confidence 99999999999999999999988754 333 344 1 3466665554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-22 Score=201.39 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+++.+|+|+||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCC
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-Ccccc
Confidence 3567788999999999999999999999999999999999853 333333 2467799999995 77889
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.|++.+....... ..+.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++++|||..
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 74 TAEQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp CHHHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred CHhHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 999998775432110 001111123344555543 232332 356899999999988 57788999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
..|.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 145 ~~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 145 FYSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp TTSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred cccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 88764 2222 3789999999733 3333 34444 5564 5666665443
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-22 Score=201.52 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=122.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
...+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+... ..++++..+.|+.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 3568999999999999999999999999999999999653 3346 67554433332 23333333343322 123
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH-HHHHHHHHHHHhCCCEEEEeCCCC-
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS- 161 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe-rqRv~ia~~L~~~p~illLDEPts- 161 (583)
.+++.... .+.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33443321 11223334455554432221 111 124688888 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHHC-CcEEEEEecCCC-h--------------------HHHhhcCeEEEEcCCeE
Q 007952 162 --G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 211 (583)
Q Consensus 162 --g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 211 (583)
+ +|. ....++++.|++++++ |+|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 999999999951 2 57789999999998874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-21 Score=219.70 Aligned_cols=153 Identities=23% Similarity=0.411 Sum_probs=120.1
Q ss_pred CcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC-C-H---HHHHHHHHHHHHHcCCCcc-c
Q 007952 48 TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-T-K---QQKEKRAIDVINELGLERC-Q 121 (583)
Q Consensus 48 ~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~---~~~~~~v~~~l~~lgL~~~-~ 121 (583)
+..|+|.++|+++.+ +..+||.|++.|......+... . . .+..++..+.+..+||.+. .
T Consensus 394 ~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l 458 (916)
T 3pih_A 394 REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTL 458 (916)
T ss_dssp TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBT
T ss_pred hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccc
Confidence 467999999987632 3346888888875544332111 0 0 0111234567888999754 3
Q ss_pred cccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 122 ~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
++ .+.+|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.|||+++||+. ....
T Consensus 459 ~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~--~~~~ 531 (916)
T 3pih_A 459 SR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE--VIRN 531 (916)
T ss_dssp TS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH--HHHT
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHh
Confidence 43 467999999999999999999887 99999999999999999999999999888999999999963 3456
Q ss_pred cCeEEEE------cCCeEEEEcChhhHHH
Q 007952 200 FDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 200 ~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||+|++| ++|++++.|+++++.+
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999 8999999999998754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=205.26 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.5
Q ss_pred cCccc-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 129 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 129 ~~~~L-SgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 45677 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EcCC
Q 007952 206 LGKG 209 (583)
Q Consensus 206 L~~G 209 (583)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-22 Score=209.26 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=97.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 96 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~ 96 (583)
+++|+++||+||||||||||+++|+|.+. +..|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 89999999999999999999999999653 33332 469999999999988 99999854211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 97 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 97 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
...+.....+++.+.++.++ .+..+. .+..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~-----~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYA-----CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCE-----EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccC-----CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222233456778888887 443333 3468999999999999999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-22 Score=224.55 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=119.4
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCC
Q 007952 6 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 6 ~~~iL~~vs~-~i~~Ge~~~i~G~nGaGKSTLl~~--l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~ 79 (583)
..++|+|+|+ .+++||+++|+||||||||||+++ ++|... +.+|+|+++|++... ..++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 678542 357999999987432 23456899999754211
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+ +.+ ..... . ++..++++.+++.+..+. .++.|||| +|+++++|||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 100 00000 0 001112223333322222 23456665 4789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhhcCeEEEEcCCe
Q 007952 160 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGS 210 (583)
Q Consensus 160 ts-----gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G~ 210 (583)
|+ +||+..+..+.+++++++++|+|||+++|++... ...+||+|++|++|+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 98 5699999999999999988899999999998652 234599999999843
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-20 Score=218.54 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=112.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+.+.+++|+|+++++|++++|+||||||||||||++++... ....| +|||++....+.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~-~aq~G-----------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL-MAQIG-----------------CFVPCESAEVSI---- 704 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH-HHHHT-----------------CCBSEEEEEEEC----
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH-HHhcC-----------------CccccccccchH----
Confidence 34678999999999999999999999999999999942110 00011 011111000000
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEPtsg 162 (583)
+++++..+|+.+. ..+++|+|++++..+|+++ +++|++++|||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 0011122222211 1246888888888888888 899999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 163 LDSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|+.....+ ..+++.+++ .|+|+|++||+. ++.+++|++..+.+|++...++.+++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999888 677788876 499999999994 46789999999999999998887664
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-20 Score=201.59 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=118.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 93 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~ 93 (583)
++.+++|++++|+||||||||||++.++|... + .|+ +.+.+++|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 56899999999999999999999999999542 2 242 12456666541 1223222 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 007952 94 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 168 (583)
Q Consensus 94 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~-----~~ 168 (583)
+. ..+ +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 330 ~~--g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SW--GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TT--SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred Hc--CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11 122 112 223455444433 46789999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhhcCeEEEEcCCe
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 210 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~~G~ 210 (583)
..+.++++.+++.|+|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999988999999999971 34667899999999886
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=203.67 Aligned_cols=134 Identities=25% Similarity=0.403 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHcCCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC-
Q 007952 80 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p- 151 (583)
.+||.|++.|...+.++.. .. .++..+++ +.++.+||... .+. .+.+|||||||||.||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCCC
Confidence 6899999999776654321 00 02344555 45899999753 343 46799999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 152 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 152 -~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . .+.||+|++| ++|++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999963 3 4679999999 789999999998764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-20 Score=184.55 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=99.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-ccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.+|+|+| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999999652 44 7999999987532111112222221
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
.+|++. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 223321 122 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+...++ +. ++.|.+|++++|+++ ..+.+|+++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 456999999999965 4678999988854
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-19 Score=161.62 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=73.7
Q ss_pred CccCcccChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 127 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 127 ~~~~~~LSgGerqRv~ia------~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
+..+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345789999999999886 899999999999999999999999999999999987799999999996 367899
Q ss_pred CeEEEE--cCCe
Q 007952 201 DKLILL--GKGS 210 (583)
Q Consensus 201 D~v~~L--~~G~ 210 (583)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4564
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-20 Score=217.21 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=115.2
Q ss_pred cccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEE-EEccCCC
Q 007952 5 EEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~-------Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~-yv~Q~~~ 76 (583)
+++.+++|+++.+++ |++++|+||||||||||||+| |... . ..++| ||||+..
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC
Confidence 456799999999987 999999999999999999999 8542 1 12355 9999763
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.+||.|++. ..+|+.+.... ....+|+++++ +++|++++++|++++|
T Consensus 828 ---~l~v~d~I~------------------------~rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVF------------------------TRLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEE------------------------EECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHH------------------------HHcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 456655441 11222221111 12467777665 9999999999999999
Q ss_pred eCCCCCCCHHHH-HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE--EEcChhh
Q 007952 157 DEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 219 (583)
Q Consensus 157 DEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 219 (583)
||||+|+|+... ..+.+.|+.++++ |.++|++||++. .+...+|++.++ +|++. +.|++++
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999999885 5578999999876 999999999964 455678998887 58877 5565543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-20 Score=192.76 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=129.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------cccccEEEEccC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------SLKSKIGFVTQD 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------~~~~~i~yv~Q~ 74 (583)
+..+|+++ +++.+||+++|+||||||||||+++|+|... ++.|.|.+.|++..+ .+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 46789999 9999999999999999999999999999653 567999998875211 134557888875
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+. +..+.+.-... .....+.....+ .+.. +--..+..+|+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl---~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVL---LMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEE---EEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHH---HHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 23333221100 000111211111 1110 0002356899999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+....++.++++++.+ +|. ||++++||.+ ...||+++++.+|+++..|++++.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999874 477 8999999976 357999999999999999988765
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-20 Score=179.59 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=97.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC-----cccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-----~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+-+++||+++|+||||||||||+++|+|....++ .+|.+++++.+.. ..+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5799999999999999999999999999543322 2346666665321 01223444444333322 33333221
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH-HHHHHHHHHHHh-------CCCEEEEeCCCC
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIII-------NPSLLFLDEPTS 161 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe-rqRv~ia~~L~~-------~p~illLDEPts 161 (583)
....++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 ----------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp ----------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred ----------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11223333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHHC-CcEEEEEecCCC---hHHHhhcCeEEEEcCCe
Q 007952 162 GLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPS---SRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~-------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~---~~i~~~~D~v~~L~~G~ 210 (583)
++|+. . ..++++.|++++++ |+|||+++|... ..+...+|+++.|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 23788888888654 999999999532 13667899999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-18 Score=200.89 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=101.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.|++|+|+++++|++++|+||||||||||||++++... ....| ..+... ...++. -+.++..+.+.
T Consensus 658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-~aq~g------~~vpa~-~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-MAQIG------SYVPAE-EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-HHHHT------CCBSSS-EEEEEC---CSEEEEEC---
T ss_pred CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-HhhcC------ccccch-hhhhhH---HHHHHHhCChH
Confidence 35789999999999999999999999999999999986321 00111 001000 011121 11122222221
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
++ ... ....+|+||+|++.|+++ +++|++++|||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134789999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-CCcEEEEEecCCChHHHhhcCeE
Q 007952 165 STTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 165 ~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v 203 (583)
+.....+. .+++.+++ .|+|+|++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99999997 77888865 5999999999953 45667653
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-19 Score=200.97 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=101.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|++ |++++|+||||||||||||+|+|... .+..|.+. . ..+..+++++| +++.+++.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~-~~~~G~~v------p-a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL-LAQVGSFV------P-AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH-HHTTTCCB------S-SSEEEECCCSE---EEEECCC-
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh-hcccCcee------e-hhccceeeHHH---hhccCCHH
Confidence 346789999999 99999999999999999999999532 12345431 1 12345788776 55556665
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 159 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEP--- 159 (583)
|++. .++|+|+++++.+++++ +++|++++||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 14789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 160 TSGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 160 tsgLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
|++||..+. ..+++.|++ .|.|+|++||++. +.+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 999999875 578888766 5899999999953 44444
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-20 Score=183.53 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCCHHHHHHHHHHcC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 94 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lTv~e~l~~~~~~~ 94 (583)
.++|++++|+||||||||||+++|+|.+. + .++|++|++.++ +.+|++++..+.. .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E------------------RVALLPMDHYYKDLGHLPLEERLRVNY--D 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--T
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C------------------CeEEEecCccccCcccccHHHhcCCCC--C
Confidence 57899999999999999999999999541 1 589999998776 5689998865431 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER----KRVCIGNEIIINPSLLFLDEPTSG-------L 163 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGer----qRv~ia~~L~~~p~illLDEPtsg-------L 163 (583)
.+. ....+++.+.++.+++.+..+. ++..+|+||+ ||++++++++.+|+++++||||++ |
T Consensus 61 ~~~----~~~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD----AFDLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG----GBCHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh----hhhHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111 1223456777888887665443 3467999964 688999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCcEEEEEecCC
Q 007952 164 DSTTALRIVQMLQDI-AEAGKTVVTTIHQP 192 (583)
Q Consensus 164 D~~~~~~i~~~l~~l-~~~g~tii~~~H~~ 192 (583)
|+.....+.+.+++. +++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999886 45699999999974
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-19 Score=186.33 Aligned_cols=165 Identities=22% Similarity=0.199 Sum_probs=103.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc----cE-EEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~----G~-I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
.|+++ ++.+++|++++|+||||||||||++.+++....++.+ |+ |++++.+.. .++++++++|+..+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 35555 6899999999999999999999999999965323333 67 888886541 23456677776655443 4
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-------hCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-------~~p~ill 155 (583)
+.||+.+.. ... |.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~------~~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR------AFN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE------CCS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe------cCC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 544443210 001 334455555555554 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 156 LDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 156 LDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 999999999862 4567777777765 4899999999854 3333445555566666655544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-18 Score=179.32 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=108.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCCCCCCCCHHHHHH
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
+|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|+..++|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999999999764 4689999999886421 1 346899999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
++..... ...+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~------------d~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY------------DLLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC------------SEEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC------------CEEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6532100 001223334433221 23455569999999999999995544 5666666
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCC
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQP 192 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~ 192 (583)
.++++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6777778887654 89999999984
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-19 Score=185.35 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=86.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-ccccEEEEccCCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-~~~~i~yv~Q~~~~~~~lT 82 (583)
.+++.++++++++| +|+||||||||||++.|.|... .+.+| |.++|.++... ..+.+++++|++.....+|
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 45678999999998 9999999999999999999522 24678 88888765432 2356899999988888899
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC-
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS- 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts- 161 (583)
|.|+..++.... ..+.....++.+.+. .+. +.+++|||||||+.+|++++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~-----~~e~~~~l~~~l~~~------~~~-----~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-----CRDCFKTIISYIDEQ------FER-----YLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHHH------HHH-----HHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-----cHHHHHHHHHHHHHH------HHH-----HHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 999887753221 000111112222111 122 35789999999999888875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
|||+... +.++++.++ +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 566666544 788999999964
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-18 Score=197.16 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=110.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|++ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..++++.| +++.+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHH
Confidence 356799999999 99999999999999999999999984311 1112 11211 1234666655 55556666
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|++... ...+|+|+++ ++.+...+++|++++||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 554221 1135666654 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 165 STTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 165 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+.....+ .+.++.+++ .|.++|++||++. +.+++|++..+.+|++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 9877775 788888887 4999999999964 457889887778888766544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-18 Score=166.23 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=109.7
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-ccc---ccEEEEccCCCCCCCC
Q 007952 7 KDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~-~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~---~~i~yv~Q~~~~~~~l 81 (583)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... ... ..+++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 456888885 899999999999999999999999998542 345666654433221 000 0111111110000 00
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEP 159 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEP 159 (583)
++ ++.....++ . .. .....|.+|.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-D----QW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC-----C----TT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-c----ee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0 00 112459999998888888788999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-CCcEEEEEecCCC-------hHHHhhcCeEEEEcCC
Q 007952 160 TSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKG 209 (583)
Q Consensus 160 tsgL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~i~~~~D~v~~L~~G 209 (583)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||++++|++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9887 99999999999999975 5999999999972 3377889999999764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-19 Score=169.31 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=103.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
|++++|+||||||||||+++|+|.+. .+| |.++|.+... ..++.+||++|+. ... ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999652 578 9998876642 3567899999975 111 1111 01100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 170 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv-~ia~---~L~~~p~illLDE--PtsgLD~~~~~~ 170 (583)
+.++ ..+..+| .+...+|+|||+++ ++++ |+..+|+++++|| |+..+|......
T Consensus 67 ------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 1111 0111233 23457999999988 4444 5789999999999 899999875444
Q ss_pred HHHHHHHHHHCCcEEEE----EecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 171 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 171 i~~~l~~l~~~g~tii~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+++.+..+++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 238853 2456777777888887654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=160.78 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=106.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
.-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 3589999999999999999999999998432 45553 3443321 3468888776532 01222221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---H
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---L 169 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts--gLD~~~~---~ 169 (583)
..... ...+++++.+++.+..+. .+..+|+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 235667788888765443 4578999998875 68889999999999999 9998544 8
Q ss_pred HHHHHHHHHHH-CCcEEEEEecCCC
Q 007952 170 RIVQMLQDIAE-AGKTVVTTIHQPS 193 (583)
Q Consensus 170 ~i~~~l~~l~~-~g~tii~~~H~~~ 193 (583)
++++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999864 5999999999853
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-18 Score=193.30 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=112.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-------ccccccEEEEccCCCCCCCCCHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-------~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
++++. +||+|||||||||||++|+|.. .|..+|+|.++|.++. ..+++.++|++|+..+++.+||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 45543 9999999999999999999974 3336899999998742 24567899999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC------CC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TS 161 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP------ts 161 (583)
.++...... ...+++. +++.++.+...+|+++++||| |+
T Consensus 119 ~~~~~~~~~----------------~~~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAG----------------EGMGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHC----------------SSSCCCS-------------------CCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcC----------------Cccccch-------------------HHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 875321100 0001110 111111222348999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCCh------HHHhh-----cCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------RLFHK-----FDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~------~i~~~-----~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+..+.++.++++++.++ +.++++++|+... .+.+. ...|.++.++..+..|+.+++.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 99999999999999997543 6788899998652 12222 24578889988888887655443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-17 Score=173.95 Aligned_cols=128 Identities=26% Similarity=0.330 Sum_probs=91.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
...+|++++|+|||||||||||++|+|.+. +..+|.|...+.++....+...++++|.......+|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~----------- 186 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFS----------- 186 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHH-----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHH-----------
Confidence 678899999999999999999999999653 22257776655554333333445555543222111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 96 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 96 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
+ +||++|..+|++|++|||| |..+ .+.+
T Consensus 187 -----------------------------------------~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 187 -----------------------------------------E----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp -----------------------------------------H----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred -----------------------------------------H----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 1 9999999999999999999 6555 4444
Q ss_pred HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
.++++.|+||++|+|+.+. + +.+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 4556779999999999764 4 789999888654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-20 Score=174.91 Aligned_cols=169 Identities=12% Similarity=0.061 Sum_probs=113.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 99 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 99 (583)
|++++|+||||||||||+++|++ +.+|++.++|.++.+. ...++++|.....+..|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF----- 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH-----
Confidence 78999999999999999999997 2368999998765322 23567777654455567888877643211
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---ccCccc--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 007952 100 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 100 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~L--SgGerqRv~ia~------~L~~~p~illLDEPtsgLD~~~~ 168 (583)
.. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| +||+...
T Consensus 70 ------------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 70 ------------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ------------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ------------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00 0100011110000 012345 899998988888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCcEEEEEecC-CChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.. .+.++.+.+.+.++|.++|+ +. ++.+.||+|+ ++|+++..|+++-+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888876667899999998 65 4778999998 99999999988754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-17 Score=162.84 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=101.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccccccEEEEccCCCCCCCCCH----HHHHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KETLT 88 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv----~e~l~ 88 (583)
.-..++|++++|+||||||||||+|+|+|..+ + ...|.|.+++.+.....++.++|++|++..|+.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 45678999999999999999999999999653 2 368999999887654445678999997654443333 11111
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+ .|+ ..+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~-----------------------------------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 V-----------------------------------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp E-----------------------------------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred H-----------------------------------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 0 000 01112 222 34566678999999 999999
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
.++.+.+. +++||++++|++.. +.+ |+ +++| .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99999876 58999999999643 333 43 6777 577877776554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-16 Score=149.59 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=100.6
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 7 KDILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 7 ~~iL~~vs-~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.|+++. +-+++|++++|+||||||||||++.|++ . ...+.+ |+..++. .+..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~----------------~i~~~~~----~~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVA----------------YVDTEGG----FSPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEE----------------EEESSCC----CCHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEE----------------EEECCCC----CCHHH
Confidence 34567766 4899999999999999999999999998 1 112223 3333221 11111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTSG 162 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe--rqRv~ia~~L~~~-p~illLDEPtsg 162 (583)
-....... .... +++++.+. +...|+++ ++++..+++++.+ |+++++||||++
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111000 1111 11222221 12445554 5678888899876 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHHC-CcEEEEEecCCCh------------HHHhhcCeEEEEcCC
Q 007952 163 LDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 209 (583)
Q Consensus 163 LD~~~--------~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~i~~~~D~v~~L~~G 209 (583)
+|+.. ..++++.|++++++ |.|||+++|.... .+.+.||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 25566778888764 8999999998542 466789999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-17 Score=171.48 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=92.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+.+.+++|+||+| +|+||||||||||+|+|+|.....+..|.+.+++.+ ....+.+++++|++.+++.+||
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceee
Confidence 35678999999998 999999999999999999965321212222222111 1123568999999988888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC---EEEEeCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS---LLFLDEPT 160 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~---illLDEPt 160 (583)
.||+.+..... ..+..+.+.+.++ ..++.+++||+.||++++.+|+ ++++||||
T Consensus 93 ~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 93 VDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp EECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred eechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 99987753211 1111111212121 1466788889999999999999 99999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 161 -SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 161 -sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
+|||+... +.++++.+ +.+||+++|..
T Consensus 150 ~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 150 GHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred ccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 69998873 44555544 77888888763
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=136.52 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=73.4
Q ss_pred cCcccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 129 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
.+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|+. ...+.+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 457899999999999999974 4699999999999999999999999999875 46889999984 4578999998
Q ss_pred EEc--CCeE-EEEcChhhHHH
Q 007952 205 LLG--KGSL-LYFGKASEAMA 222 (583)
Q Consensus 205 ~L~--~G~i-v~~G~~~~~~~ 222 (583)
.+. +|.. +...+.++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 664 6643 34444444433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-17 Score=155.59 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=94.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCccccccEEEEccCCCC----CCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSKSLKSKIGFVTQDDVL----FPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~----~~~ 80 (583)
.++++ +.+++|+.++|+|+||||||||+|.|+|.... .+..|++.+.+.-. ....+-.+ +.+.+ .+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~ 89 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPE 89 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EETTEEEE-ECCCCC------
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecCCEEEE-ECcCCcccccCH
Confidence 57777 88999999999999999999999999996410 23456554322100 00011111 00110 000
Q ss_pred CC---HHHHHHHHHHc-CC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH-HHHHH
Q 007952 81 LT---VKETLTYAALL-RL----------PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGN 145 (583)
Q Consensus 81 lT---v~e~l~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR-v~ia~ 145 (583)
-. .+..+...... +. ....+. ..+.+.+.++..++.... ++ .....+|+||||| +..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~---v~-nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV---LL-TKADKLASGARKAQLNMVR 163 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE---EE-ECGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE---EE-ecccCCCchhHHHHHHHHH
Confidence 00 11122211110 00 011121 223455666666665321 11 1245799999999 89999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 184 (583)
+++.+|+.+++|||||++|.....++++.|.++.++|.|
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998766644
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-15 Score=161.76 Aligned_cols=130 Identities=20% Similarity=0.314 Sum_probs=97.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-ccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+|++++ +++|++++|+||||||||||+++|+|... +. +|+|.+.|.++....++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 78999999999999999999999999653 34 79998877766434566788888841
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1134 459999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
... .++. ++.|.+|+.++|+.+ +.+.+|+++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 356899999999954 567888887664
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-15 Score=144.15 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=97.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--ccccEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 93 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~ 93 (583)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|+.. +.+||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999995 2469999999865321 2234678887644 457889988765321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 007952 94 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173 (583)
Q Consensus 94 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~ 173 (583)
...... ...++.+++..++...... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~-----~~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGY-----FVILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSC-----EEEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCC-----eEEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 100000 0000111111112111100 1124579999999999999999999876 68888888777
Q ss_pred HHHHHHHCCcEEEEEec
Q 007952 174 MLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 174 ~l~~l~~~g~tii~~~H 190 (583)
.++.+.+.+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-15 Score=156.23 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=88.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-CccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.-+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.......++.+++++|+..++++.||+|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 345666664 47999999999999999999999996531 468999987 765433345679999999999999999984
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
- + ...+.++..+++.++++.+|+.+..+.. +.++| ||+||++||+++
T Consensus 282 ~-------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-------L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred h-------h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1345666777788999999998776653 56899 999999999764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-16 Score=165.57 Aligned_cols=171 Identities=12% Similarity=0.145 Sum_probs=111.8
Q ss_pred cccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
++++ |+++|+++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+|
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccc
Confidence 3445 9999999999999 99999999999999999999632 22211 1100 1123457999999999888999
Q ss_pred HHHHHHHHHHcCCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCcccChHHHHHHHH
Q 007952 83 VKETLTYAALLRLPNTLTKQ--------QKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCI 143 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----ig--~~~~~~LSgGerqRv~i 143 (583)
|.||+.++.. .... ...+..++.++.. ++.. ..++. +. .....+++-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999866421 1211 1233455566554 4431 11221 10 01113566666 789
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCcEEEEEecC
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 191 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 191 (583)
+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999986 87789999888754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-17 Score=165.39 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---CCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~---g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..|+.|++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 9542 567998887765432333445667888888888899999987532100
Q ss_pred -----CCCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCccCcccChHHHHHHHHHHHH-HhCCCEEEEe---
Q 007952 96 -----PNTLTKQQKEKRAIDVIN--ELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 157 (583)
Q Consensus 96 -----~~~~~~~~~~~~v~~~l~--~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L-~~~p~illLD--- 157 (583)
-...+... .+++.+.+ ..++--.. -..+.++.+..+|| |+ +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00111111 11222221 11200000 01112334567998 55 677 8999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 007952 158 -EPTSGLDSTTALRIVQMLQDIAEAG 182 (583)
Q Consensus 158 -EPtsgLD~~~~~~i~~~l~~l~~~g 182 (583)
|||+|||..+...+.+.++++.+++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-17 Score=176.69 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=100.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhCCCCCCCcc----cEEEEC----CccCC---ccccccEEEEccCC
Q 007952 9 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 75 (583)
Q Consensus 9 iL~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~----G~I~~~----g~~~~---~~~~~~i~yv~Q~~ 75 (583)
+.+.|++++++ |+.++|+||||||||||+++|+|... +.+ |+|.++ |.+.. ..+ +.|++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45779999999 99999999999999999999999653 456 776653 22110 000 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-hCCCEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 154 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-~~p~il 154 (583)
.+++ .|+.||+.+ ++ .+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~-------------------------~~-~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAF-------------------------ID-TDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEE-------------------------ES-SCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEE-------------------------Ee-CCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 1000 111111100 00 011111 12356777888888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 155 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 155 lLDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+||| |+ .++|...+..+.+.|+++.+ .|.+|++++|. . +..+++|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999999765 48899999875 3 3456666665553
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-18 Score=175.42 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=104.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC------CCcccEEEECCccCCc-------------------cccccEEEE---c
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 72 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~------~~~~G~I~~~g~~~~~-------------------~~~~~i~yv---~ 72 (583)
++++|+|+||||||||+|.|.|.... .++.|+|.++|.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986411 2468999999987632 123446777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+..++++.+|.|+..++........+ +......++++++..+++.+..+.. .++|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 776666677887776542100000000 0000000112223334444433332 2689999999988888888
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
+|+++ ||| ..+.+.++++. .+.||++++|++.. ...++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99887 888 77888888875 58999999998653 333443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-15 Score=155.37 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=100.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-Cc-cccccEEEEc-cCCCCCCCCCHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-SK-SLKSKIGFVT-QDDVLFPHLTVKE 85 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~~-~~~~~i~yv~-Q~~~~~~~lTv~e 85 (583)
+++++|+.+++|++++|+||||||||||+|+|+|... +.+|.|.++|..- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4499999999999999999999999999999999653 5789999998532 21 2567789998 65431
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222355566667777899999999985
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++.+.++.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677776554457899999954 567899999888764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-14 Score=137.63 Aligned_cols=152 Identities=20% Similarity=0.332 Sum_probs=86.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC-----cccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-----~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+-+++|++++|+||||||||||++.|++....++ .+|.+++++.+. + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 5799999999999999999999999998421122 345666665431 0 11111111
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEPTSGLDST 166 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR-v~ia~~L~--~~p~illLDEPtsgLD~~ 166 (583)
...+. ... +++++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~g----~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERYG----LSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHTT----CCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHcC----CCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 11110 111 11222111 012344444332 23233343 489999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHHC-CcEEEEEecCCChH------------------HHhhcCeEEEEcCC
Q 007952 167 -------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGKG 209 (583)
Q Consensus 167 -------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~~~------------------i~~~~D~v~~L~~G 209 (583)
. ..++++.|++++++ |+|||+++|..... +...||.+++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999964321 22278999999865
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=143.15 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=67.7
Q ss_pred ccCcccChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 128 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 128 ~~~~~LSgGerqRv------~ia~~L~~~-p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..+..+|||||||+ ++|+++..+ |++|+|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 34578999999988 557888899 999999999999999999999999998753 568999999973 57889
Q ss_pred CeEEEEc
Q 007952 201 DKLILLG 207 (583)
Q Consensus 201 D~v~~L~ 207 (583)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-15 Score=137.98 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=66.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcccc-ccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~-~~i~yv~Q~~~~~~~lTv~ 84 (583)
++.+++++|+++++|++++|+||||||||||+|+|+|.+ +.+|+|.++|.++.+... ++ +++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l---~~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI---GHQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT---TCCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC---CCCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 457899999999999999999999999999999999965 358999999988743221 22 899998888 89999
Q ss_pred HHHHH
Q 007952 85 ETLTY 89 (583)
Q Consensus 85 e~l~~ 89 (583)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-15 Score=157.74 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------c--ccccEEEEccCCCCCC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~--~~~~i~yv~Q~~~~~~ 79 (583)
-+++|+++++|++++|+|+||||||||+++|+|.+. +.+|+|.++|.+..+ . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368999999999999999999999999999999653 457999998766532 1 2456999999988888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-hCC-CEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-~~p-~illLD 157 (583)
.+||++++.++..-. .+ . -+++..|..+... .+-.--+|++.+++++. ..| .++|..
T Consensus 361 ~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864311 00 0 0122223322111 11122347788888663 457 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 191 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 191 (583)
+||+|.|.. +.++.+.+ -|.|.+++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 33455543 48899999993
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-14 Score=147.42 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=98.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------cc--ccEEEEccCCCCCCCCCHHHH
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LK--SKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~--~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. ++ ..+.+++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 37899999999999999999999999653 5689999999886421 12 236699999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.++...... . -+++..|+.+..+. ....|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876321100 0 01222333322221 123444 37888887777777774443
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecC
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQ 191 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~ 191 (583)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 466667777764 48999999995
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-16 Score=160.05 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=108.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~ 77 (583)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.++.. ..+++++|++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3568999999999999999999999999999999999653 468999999876532 235678999999887
Q ss_pred CCCCC------------HHHHHHHHHH-----------------------------cCCCCCCCHHHH---HHHHHHHHH
Q 007952 78 FPHLT------------VKETLTYAAL-----------------------------LRLPNTLTKQQK---EKRAIDVIN 113 (583)
Q Consensus 78 ~~~lT------------v~e~l~~~~~-----------------------------~~~~~~~~~~~~---~~~v~~~l~ 113 (583)
++..+ ++|.+..... +..+. ..++. ++.+.+...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhcccc
Confidence 75321 3333311100 00000 00010 001111111
Q ss_pred HcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 114 ~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.+.++ ..|. .....+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 197 ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22221 1121 1124689999999999999887 688876 999999999999999988654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=124.81 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=38.5
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE-EEEEecCCCh
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT-VVTTIHQPSS 194 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t-ii~~~H~~~~ 194 (583)
+.+|++|++|||++ +|...+..+.+.++++.++|++ +|+++|.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 45799999999998 6666699999999999888888 8999996543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=130.26 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.5
Q ss_pred HHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 007952 147 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 195 (583)
Q Consensus 147 L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 195 (583)
.+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999999888899999999997654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-14 Score=154.31 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=100.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
-++++++++.|+.++|+|+|||||||||++|+|... .+.+.+.+. ....+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT-l~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT-LSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS-SCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce-ecceeeEEEecCc--ceEEEEecccc
Confidence 379999999999999999999999999999999531 233443321 2234566665530 01111111000
Q ss_pred HHHcCCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 90 AALLRLPNTLTKQQK--EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.........+..... .++++.++..++++ +..+.++|+|++||+.++++|+.+|.++++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 000000001111111 11122233334443 124568999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HHCCcEEEEEecCCChHHHhhcCeE
Q 007952 168 ALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 168 ~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 7 455555554 3457777766644344455555543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-15 Score=140.95 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=86.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCC-------cccc-ccEE----EEccCCCCCCCCCHHHHH
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~-------~~~~-~~i~----yv~Q~~~~~~~lTv~e~l 87 (583)
++++|+|+||||||||++.|+|.+... ...|+|.++|.++. +.+| +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999965311 12699999998732 1234 3566 888877655 110
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE-------EEeCC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDEP 159 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il-------lLDEP 159 (583)
. .. +....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .=|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01 111235566665 43 24777763 59999999999999999999873 22454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHCC
Q 007952 160 TSG---LDSTTALRIVQMLQDIAEAG 182 (583)
Q Consensus 160 tsg---LD~~~~~~i~~~l~~l~~~g 182 (583)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34555677777776665554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=140.06 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred CcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 130 VRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3469999999999999999 57999999999999999999999999999876688999999994 45688999999
Q ss_pred Ec
Q 007952 206 LG 207 (583)
Q Consensus 206 L~ 207 (583)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-14 Score=144.37 Aligned_cols=122 Identities=12% Similarity=0.134 Sum_probs=82.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc---cc-ccEEEEccCCCCC-----CCCCH
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTV 83 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~---~~-~~i~yv~Q~~~~~-----~~lTv 83 (583)
++.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++.+.. .+ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 653 56899999 89876532 22 3689999998653 78999
Q ss_pred HHHH--HHH----HHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHH
Q 007952 84 KETL--TYA----ALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 84 ~e~l--~~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
|++ .|. ..++.....+..+...+++++++.++|.+ ..+. +++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 887 443 10111111122233456889999999985 4443 457899999999999873
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-14 Score=143.36 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=88.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH----c
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 93 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~----~ 93 (583)
+++.+++|.||||||||||.+.|.+.+. + .| . . ++.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 5788999999999999999999998652 1 22 0 1 3446677999988875 88999887521 1
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHcCCCc--c--ccccccCccCcccChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCC
Q 007952 94 R---LPNTLTKQQKEKRAIDVINELGLER--C--QDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 94 ~---~~~~~~~~~~~~~v~~~l~~lgL~~--~--~~~~ig~~~~~~LSgGerqRv~ia--~~L~~~p~illLDEPtsgLD 164 (583)
. .|.... .+...+.++.+.-.- . ....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 133222 344556676664320 0 01111 224468999999999987 555 999999999999999
Q ss_pred HHH
Q 007952 165 STT 167 (583)
Q Consensus 165 ~~~ 167 (583)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=133.00 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.7
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CcEEEEEecCCC------------------hHHH
Q 007952 149 INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS------------------SRLF 197 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~ 197 (583)
.+|+++++|||++.+|+... .++++.|++++++ |.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 6788889998765 999999999821 2245
Q ss_pred hhcCeEEEEcCCe
Q 007952 198 HKFDKLILLGKGS 210 (583)
Q Consensus 198 ~~~D~v~~L~~G~ 210 (583)
+.+|.++.|.+++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999888764
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-15 Score=156.85 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=92.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEc------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT------ 72 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~------ 72 (583)
+.+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|+|.+.|.++.. ..++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467777 4 38999999999999999999999999653 458999999987642 1234455655
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHH
Q 007952 73 ---QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 73 ---Q~~~~--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ 142 (583)
|++.. ++. .|+.+++.++...... .+.......+ +.+.+..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88754 343 6899998876421100 0000001112 22346778887542 246899999999
Q ss_pred HHHHHHhCCCEEE
Q 007952 143 IGNEIIINPSLLF 155 (583)
Q Consensus 143 ia~~L~~~p~ill 155 (583)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-14 Score=159.85 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=107.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-CCccccccEEEEccCCCCC-------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLF------- 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~~~~~~~~i~yv~Q~~~~~------- 78 (583)
..+++++++.+++|+.++|+|||||||||||++|+|... +.+|.|.++|.+ +.....+.++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 457889999999999999999999999999999999663 568999999865 2212234566666553322
Q ss_pred ---------------CCCCHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHcCCCc--ccccccc--C---ccCcccCh
Q 007952 79 ---------------PHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLER--CQDTMIG--G---SFVRGVSG 135 (583)
Q Consensus 79 ---------------~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~--~~~~~ig--~---~~~~~LSg 135 (583)
..++..|++.+.......+. ++. .....+.++++.+.... .....+. + .....+||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 23444444433222111100 000 00001233333332211 0000000 0 12346899
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE--EecCCChHHHhhc
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 200 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~i~~~~ 200 (583)
|||||..++. + | |+|||+.....+++.+.++.++|+|+++ ++|+.. ++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877642 2 7 9999998887777777777666888875 888854 455555
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=133.66 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=75.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 100 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 100 (583)
+.|.||||+|||||+++|++.+. ++..|++.++|.+... ..+..+++++|.+.+.-..+ + .. ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF-GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS-CTTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---Ccc
Confidence 89999999999999999999433 3457999999876542 22456888888764321111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.. .+.+.++.+......+.. . .+|| +..+|+++++|||++ ||+.++..+.+.|.+..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred hH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 11 233344433211111111 1 4566 778999999999999 99999999999998864
Q ss_pred CCcEEEEEecCCCh
Q 007952 181 AGKTVVTTIHQPSS 194 (583)
Q Consensus 181 ~g~tii~~~H~~~~ 194 (583)
.+.++|+++|++..
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 37899999999764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-15 Score=156.95 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=120.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCC----------CCCcccEEEECCccCCc-----ccccc---EEEEccCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK-----SLKSK---IGFVTQDDV 76 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~----------~~~~~G~I~~~g~~~~~-----~~~~~---i~yv~Q~~~ 76 (583)
+.+++|+.++|+|+||||||||+|+|+|... ..+..|.+.++|..+.. ..++. ..++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 3678999999999999999999999999321 12568999998854311 11222 347778888
Q ss_pred CCCCCCHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC--C
Q 007952 77 LFPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--S 152 (583)
Q Consensus 77 ~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p--~ 152 (583)
+.+..+..|++ .|...++. ++.++..++..+ +..+..+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchh
Confidence 88877776655 33332221 111222222211 12334567653 89 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhhcCeEE-EEcCC-eEEEEcChhh
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKASE 219 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 219 (583)
++++|||+.++|+....+.++.++++ ++.|+||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999999999998 76777864 9984 46788999999 99999 9988777543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-13 Score=133.73 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=89.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 96 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~ 96 (583)
.++|++++|+||||||||||+++|+|.+. +. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS--AQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH--HT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57899999999999999999999999653 11 2 124555555443321 112211100000111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 97 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 97 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia-~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
...... ...+.+..+...+..+....+ ...+.|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 111211 222333333211111222222 2346799999999987 77788888777888731
Q ss_pred HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
.++.+.--.++++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1112222367777777554456666662 34454 5667666554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-13 Score=141.21 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred cccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc---c-ccccEEEE
Q 007952 5 EEKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---S-LKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~---~-~~~~i~yv 71 (583)
+++.+++++++.+++| +.++|.||||+|||||+++|+|.+.. .+.+|.+..++.++.. . .++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456888999999877 89999999999999999999986421 1345666655544321 1 24579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 72 TQDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 72 ~Q~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.|.+.+.+ ++.|++..........- .......+.+++.++.+++.. +++ .+..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce------
Confidence 99887765 78888854432211000 011122234445555555543 333 3468999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.+||+.+..++.+.|++.++.
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-12 Score=132.91 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=70.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc---c-cccEEEEccCCC-----------
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV----------- 76 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~---~-~~~i~yv~Q~~~----------- 76 (583)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999653 56899999 88876531 1 236899999974
Q ss_pred -----CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCh
Q 007952 77 -----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 135 (583)
Q Consensus 77 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSg 135 (583)
++|.+|+ ||+.|.. +. ...+...++.++++.+||. +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5889999 9887752 11 1122345688999999995 44443 3556774
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-15 Score=141.62 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=83.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-----------~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
++|++++|+||||||||||+++|+|.... ++..|+ ++|.++.. .+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 58999999999999999999999985420 133455 35554321 122222 3333222 123
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHH----HHHHHH-HHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK----RVCIGN-EIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq----Rv~ia~-~L~~~p~illLD 157 (583)
+.+|+ ++ .+.+ .+++.++.-.. ...+. .+ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~~~~-~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAMNRI-CVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHTTCE-EEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHcCCc-EEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33332 11 1222 23344432100 00000 00 01110 12 344 677788888889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+|+++|..+...|.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999999887653 2334522 46899887753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-12 Score=130.31 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=68.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc--c-cccEEEEccCCCCCC----CCCHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS--L-KSKIGFVTQDDVLFP----HLTVK 84 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~--~-~~~i~yv~Q~~~~~~----~lTv~ 84 (583)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+..+.. . +..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5667899999999999999999999999653 56899998 88766432 2 222799999987755 6899
Q ss_pred HHHH--HHH------HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH
Q 007952 85 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 140 (583)
Q Consensus 85 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR 140 (583)
|++. |.. .++........+...+++++++.++|.+.+... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 122111111222345688999999997643321 24677777763
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.9e-13 Score=135.27 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=69.2
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcccc
Q 007952 8 DILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 65 (583)
Q Consensus 8 ~iL~~vs~~i-------------------~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~~~ 65 (583)
++++++|+.+ ++|+++||+||||||||||+++|+|.+...+.+|+|.+ +|.......+
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~ 128 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHH
Confidence 5678888877 89999999999999999999999996431146899999 8877544445
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+.++++ |+..+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 567888 8777888899999998865543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-14 Score=142.55 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=89.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCC-CCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~-~~~~~ 80 (583)
...+++++++.+++| ++|.||||||||||+++|+|... .|.|.++|.++... ..+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456889999999999 99999999999999999999642 27999999876432 234577888874 45566
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+++.|++......+ .. .... .+.+..++ ....|||||+||+.+++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666665421100 00 0000 01122222 34689999999999999999999986 8886
Q ss_pred C
Q 007952 161 S 161 (583)
Q Consensus 161 s 161 (583)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-10 Score=118.06 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=81.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
.+++..++|++++|+|||||||||+++.|++.+. +.+|+|.+.+.+..+. ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~e------ 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIE------ 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHH------
Confidence 3566678999999999999999999999999653 3456777765442110 0011
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv---~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
....+.+..|+.. ....|||+.+++ ++++++..+|+++++|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233455566642 235689999999 89999999999999999974 4556
Q ss_pred HHHHHHHHHHHH
Q 007952 169 LRIVQMLQDIAE 180 (583)
Q Consensus 169 ~~i~~~l~~l~~ 180 (583)
..+++.|+++.+
T Consensus 202 ~~l~~eL~~l~~ 213 (306)
T 1vma_A 202 KNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=106.92 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=45.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCcEEEEEecCCChH-------HHhhcCeEEEEcC
Q 007952 149 INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 208 (583)
Q Consensus 149 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------i~~~~D~v~~L~~ 208 (583)
.+|+++++|||++.+ |+....+.+..|.+++ +.|+||++++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655666667676665 5689999999986431 4577899999964
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-10 Score=119.42 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=110.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEEECCccCCc-ccccc-EEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~~~g~~~~~-~~~~~-i~yv~Q~~~~~~~lTv~ 84 (583)
..|+++.+-+++|+++.|.|+||+|||||+..+++... ...| .|.+.+.+.+. ...++ .+...+ ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 46888888899999999999999999999999997432 1123 34443322221 11000 000000 000
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDEPtsg 162 (583)
+.+ +. ..++.++ .+++.+.++.++..+.. +- ...++|.+|.+ +.++.+. .+|+++++|+++..
T Consensus 261 ~~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RT-GKLTPED-WGKLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HT-SCCCHHH-HHHHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hc-CCCCHHH-HHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 001 11 1233332 33455666665433221 11 12478999987 5667776 68999999999997
Q ss_pred CCH--------HHHHHHHHHHHHHHHC-CcEEEEEec---------C--CC-------hHHHhhcCeEEEEcCCeE
Q 007952 163 LDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~--------~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 211 (583)
.++ ....++.+.|++++++ |++||+++| + |. ..+.+.+|.|++|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 743 3346778888888865 999999999 2 43 136778999999987754
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=109.36 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=82.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 90 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~ 90 (583)
++++++ +|++++++|+||+||||++..|++.+. +.+|+|.+.+.+..+.. ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~-----------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA-----------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH-----------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh-----------------HH-HHH---
Confidence 678888 899999999999999999999999653 34688888776542110 00 000
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 169 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP-tsgLD~~~~~ 169 (583)
..+.+..|+...... ..-.-.+.+|.+++.+...+++++++||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012234455432110 01233456788999888899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 007952 170 RIVQMLQDI 178 (583)
Q Consensus 170 ~i~~~l~~l 178 (583)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 877776655
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=113.99 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||||+|||||+..++.... ..+| .+.|+.-+...-+ . ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~---------------~vlyi~~E~~~~~------~--~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGG---------------IAAFIDAEHALDP------E--YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CEEEEESSCCCCH------H--HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCC---------------eEEEEECCCCcCH------H--HH----
Confidence 4789999999999999999999888875321 1112 2444444322110 0 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC---------
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL--------- 163 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~--p~illLDEPtsgL--------- 163 (583)
+.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 107 ------------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 107 ------------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp ------------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred ------------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 1122210 000010 11232 2345677888755 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH----HHCCcEEEEEecCCCh---------------HHHhhcCeEEEEcCCeEEEEcC
Q 007952 164 -DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 164 -D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|+ ..+..+.+.++++ ++.|+|||+++|.... .+...+|.++.+..++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2333455555555 3459999999996431 2456789888888776654443
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-11 Score=128.81 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=99.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCC--CHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETLT 88 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~l--Tv~e~l~ 88 (583)
.+++++.++..++|.|++||||||++++|..-+......|++.+.+.+... ++. ....+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCHH
Confidence 477888899999999999999999999987521111234666655544321 111 00011111 1111111
Q ss_pred HHHH-cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHH----------HHHHHHHhCCC-EEEE
Q 007952 89 YAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLFL 156 (583)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv----------~ia~~L~~~p~-illL 156 (583)
.+.. ++ ...++.++| .+.++..|+.+..+-. ......+|+||+||. .+++++...|. ++++
T Consensus 231 ~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 231 DAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 1111 11 113455555 3778888887643310 001235899998753 24555667888 7899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC----CcEEEEEecCCCh
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA----GKTVVTTIHQPSS 194 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~----g~tii~~~H~~~~ 194 (583)
||++.-+|. ...++.+.+.++++. |.++|++||+|+.
T Consensus 304 DE~~~ll~~-~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 304 DEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp ETHHHHHHH-HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred eCHHHHHhh-hhHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999998884 345666777766543 7799999999973
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-09 Score=109.57 Aligned_cols=141 Identities=20% Similarity=0.219 Sum_probs=87.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
++|++++++|||||||||+++.|++.+. +.+| +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999998652 1234 24667777652 235566554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
+..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 158 ---------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 158 ---------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ---------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ---------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 122332110 1122 23344555 45999999999 999998766555444333
Q ss_pred HH---HCCcEEEE-EecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 178 IA---EAGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 178 l~---~~g~tii~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
+. ..+.++++ ++|+. .++.+.+|++..++.+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47874 457777777666666777764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-12 Score=131.34 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=83.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ...+.+++++|+.. ..|.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45788999999999 89999999999999999999542 6899999876422 12345677888753 56677
Q ss_pred CHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 82 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 000112222222222 36899999999999999999876
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-10 Score=119.91 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=47.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
..+|+|+|+++++ |+++|+|||||||||||++|+|... +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 5689999999999 9999999999999999999999653 57899999998764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.7e-10 Score=105.44 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---C------cccEEEECCccCCc------cccccEEEEccCCCC-CCCCCHHH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEP---T------VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 85 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~---~------~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~-~~~lTv~e 85 (583)
.++|+|+||||||||++.++|..... + .+|+|.++|+++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999965321 1 46899999875421 111112222221000 00011111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHH---HcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.. .... .+.+..+++ ...-.+..-..+++. .+|..-..++..+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~~s-~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KHLT-YENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CHHH-HHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CHHH-HHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 00 0000 011111111 111111100112221 133333334578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 007952 163 LDSTTALRIVQMLQDI 178 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l 178 (583)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-12 Score=128.08 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~l 81 (583)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...+.+++++|+. ...|.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 45788999999999 99999999999999999998542 5889998865422 1234467778874 356677
Q ss_pred CHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 82 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7777774332211100 001112222222222 36899999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.6e-11 Score=132.19 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=99.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC--------
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-------- 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-------- 76 (583)
+...+++++++.+++|+.++|+||||+|||||+++|++... +...|.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHH
Confidence 44568899999999999999999999999999999999664 3344889998876543 3456888887431
Q ss_pred --------------CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHH
Q 007952 77 --------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 77 --------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ 142 (583)
.+..+++.+|+........+...-. +...... +.+|.-+... ....++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~-----~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDP-----FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCC-----C----CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEech-----hhcCCcccccccccc
Confidence 1111111111110000000000000 0000011 1112111111 112579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 143 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
.++....++.+||+||... |++..+..+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888887764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-10 Score=110.31 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=44.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
|+++++|++++|+||||||||||+++|+|.. + .+.+++....+ ..+..++|++|++..++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKE 69 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhc
Confidence 5678899999999999999999999999964 2 46666655432 2345688999976555444433
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-10 Score=109.42 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 44 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-g~~ 44 (583)
.+..+++|+++++|++++|+||||||||||+++|+ |..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-08 Score=105.26 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEecCCC
Q 007952 135 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 193 (583)
Q Consensus 135 gGerqRv~ia~~L~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 193 (583)
|++++|-.++++....|.+||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44777777777777777663 34778999999974
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-11 Score=126.48 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=83.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC-CCCCCCHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 85 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-~~~~lTv~e 85 (583)
..+++++|+.+++|++++|.||||||||||+++|+|. .+|++..-+.+. +.....+++++|... ++++++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4688999999999999999999999999999999983 357776522111 111223667777653 233333221
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---cccc--c--CccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER-CQ---DTMI--G--GSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~i--g--~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+ ..+.... ........+.+.++. +.+.. .. +... | +.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 11 0001000 010011223333331 00110 00 0000 0 1234568999999999888888899988
Q ss_pred E-EeCCCC
Q 007952 155 F-LDEPTS 161 (583)
Q Consensus 155 l-LDEPts 161 (583)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999997
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-08 Score=102.93 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-EECCccCCc-cccccEEEEccCCCCCCCCCHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+=+++|+++.|.||||||||||+..+++... ..+|.+ ++++..... ...+++|+.+|+..+....++.+.+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 4689999999999999999999999997432 234544 555544321 2233455555544333333444433
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-09 Score=105.07 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------------cccccEEEEccC
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQD 74 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------------~~~~~i~yv~Q~ 74 (583)
++++++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.. ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 677777 8999999999999999999999653 568999999987621 124678999984
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-08 Score=92.72 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007952 141 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179 (583)
Q Consensus 141 v~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~ 179 (583)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-09 Score=101.02 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=40.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc---ccccEEEEccCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDV 76 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~---~~~~i~yv~Q~~~ 76 (583)
+..+-....++|++++|+||||||||||+++|++.+ |.+.++|.++... .+...++++|+..
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 333334567899999999999999999999999843 8899998776421 1223567777543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=98.52 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=87.6
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhCCCCCC---------CcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH---
Q 007952 19 PGEV-LALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE--- 85 (583)
Q Consensus 19 ~Ge~-~~i~G~nGaGKSTLl~~l~g~~~~~---------~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e--- 85 (583)
+|-. ++|+|++|||||||+|.|+|..... +..|.|.++|.++. +....|++.|.+ .-.|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCC----GGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCC----HHHHHHHHH
Confidence 3444 9999999999999999999964310 35688888885431 222345444422 111211
Q ss_pred HHHHHHHcC-----C-CCCCC--HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH----HHH-HhCCC
Q 007952 86 TLTYAALLR-----L-PNTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPS 152 (583)
Q Consensus 86 ~l~~~~~~~-----~-~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia----~~L-~~~p~ 152 (583)
++....... . ..... ..+..+.+.++++.+++.+..--.++| +...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111100000 0 00111 123334567788888876543112222 2456788888988887 444 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
+ +|+|++|.....++.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-07 Score=96.64 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=85.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g--------~~Vl~fSl------Ems~~q-- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD--------RGVAVFSL------EMSAEQ-- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT--------CEEEEEES------SSCHHH--
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC--------CeEEEEeC------CCCHHH--
Confidence 35677777899999999999999999999998886321 1 11 12444332 133332
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
...|.......+++.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 89 ----------------l~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 89 ----------------LALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp ----------------HHHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred ----------------HHHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 2222222222233322221 26999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHC--CcEEEEEec
Q 007952 168 ALRIVQMLQDIAEA--GKTVVTTIH 190 (583)
Q Consensus 168 ~~~i~~~l~~l~~~--g~tii~~~H 190 (583)
..++...+++++++ |..+|++-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34677777777654 577777754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.7e-07 Score=104.01 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=58.2
Q ss_pred cCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-ecCCChHHHhhcCe
Q 007952 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 202 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~i~~~~D~ 202 (583)
.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++ ..+.+++++
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 345689999999999999999999999999996 999887777777766654456778775 8975 456677764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-08 Score=97.37 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=43.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE--EECCccCCcc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKS 63 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I--~~~g~~~~~~ 63 (583)
....+..+...++|++++|+||||||||||.+.|++++. ..|.+ +++|.++.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~ 67 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHG 67 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhH
Confidence 345566667778999999999999999999999999652 45877 8888766443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-07 Score=87.59 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++++|++++|+||||||||||+++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999999999965
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=89.97 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=48.6
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe--cCCC
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPS 193 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~--H~~~ 193 (583)
...+|+||+|++. +.+...++-++++| +|+.|+|......+++.+++... ++.+|++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 3468999998876 55555677789999 99999999998888888877653 67777777 7743
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-07 Score=95.39 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cc-----cccEEEE-ccCC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQDD 75 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~-----~~~i~yv-~Q~~ 75 (583)
++++|+++++|++++|+|+||+||||++..|++.+. +.+|+|.+.+.+..+ .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 478999999999999999999999999999999653 357899998876532 12 4568888 6665
Q ss_pred CCCCCCCHHHHHH
Q 007952 76 VLFPHLTVKETLT 88 (583)
Q Consensus 76 ~~~~~lTv~e~l~ 88 (583)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444434444443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-07 Score=94.81 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=45.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHh---CCCCCCCcccEEE--------ECCccCCc-----cccccEEEEccCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFVTQDD 75 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~---g~~~~~~~~G~I~--------~~g~~~~~-----~~~~~i~yv~Q~~ 75 (583)
++|++++|+|||||||||++++|+ |.. .+++|.+. .+|.++.. .+++.+++++|++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~--~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR--LLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE--EEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC--cCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 843 25789998 88877632 3456788888754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-09 Score=113.72 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=84.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~~-~~~~l 81 (583)
..+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|.++... ..+.+..++|+.. ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 35688999999999 89999999999999999999542 57899998765432 1233556666643 34555
Q ss_pred CHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.+.|++......+.. .....++..+.+.+++. .|||||+|+..++++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555321111100 00112233333333332 4788999998899899999987 78887
Q ss_pred C
Q 007952 161 S 161 (583)
Q Consensus 161 s 161 (583)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-07 Score=84.26 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=30.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++++++.+| +++|+||||||||||+++|.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999 99999999999999999999855
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.8e-07 Score=95.72 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=50.7
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE-EcCCeEEEEcChh
Q 007952 149 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS 218 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 218 (583)
.+|++|++||+..-.+. .++..+.+.+.++.+.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6788899999998888999999999865433222233222 3557777777654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-07 Score=87.79 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 101 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 101 (583)
+++|+|||||||||+.+.|++ + |...+++..+.+... .+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-----------------------------~~~---- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-----------------------------AKD---- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-----------------------------CSS----
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-----------------------------cCC----
Confidence 689999999999999999997 2 333343322110000 000
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 102 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 102 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.....++.+.+|... -.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.++.. .
T Consensus 44 ---~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ---CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ---hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 012344556666431 13678888999988888887654333 3345666555555544332 2
Q ss_pred CcEEEEEecCCChH-HHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 182 GKTVVTTIHQPSSR-LFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 182 g~tii~~~H~~~~~-i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+.++|+.+|...+. ....||.+++++ .+++...+.
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~R 140 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD-------VSPQTQLAR 140 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHH
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE-------CCHHHHHHH
Confidence 56888888875432 246788887774 455555444
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.9e-07 Score=84.09 Aligned_cols=42 Identities=29% Similarity=0.175 Sum_probs=24.5
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+....++|+|+++++|++++|+|++||||||+.+.|++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345567999999999999999999999999999999999743
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=82.38 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=78.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-......+.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~~~~~~g 181 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRDIADRFN 181 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHHHHHHcC
Confidence 5689999999999999999999999987421111100 0 01235565554421 2222222222211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHH-HHHHHHHHHH----hCCCEEEEeCCCCCCCHH---
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER-KRVCIGNEII----INPSLLFLDEPTSGLDST--- 166 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGer-qRv~ia~~L~----~~p~illLDEPtsgLD~~--- 166 (583)
.+. +++++.+-+ .+..++.+. +.+..++.++ .+++++++|+.++-.+..
T Consensus 182 ----~~~-------~~~l~~l~~------------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~ 238 (343)
T 1v5w_A 182 ----VDH-------DAVLDNVLY------------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 238 (343)
T ss_dssp ----CCH-------HHHHHTEEE------------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG
T ss_pred ----CCH-------HHHHhceeE------------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc
Confidence 111 123332211 112233322 4455566666 569999999999865432
Q ss_pred ---------HHHHHHHHHHHHHHC-CcEEEEEecC
Q 007952 167 ---------TALRIVQMLQDIAEA-GKTVVTTIHQ 191 (583)
Q Consensus 167 ---------~~~~i~~~l~~l~~~-g~tii~~~H~ 191 (583)
...+++..|++++++ |.+||++.|-
T Consensus 239 ~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 239 RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 134556666666654 8898888885
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=82.99 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=81.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~-~~~~l 81 (583)
..+|++++++++ .++|+|++|||||||++.|+|....|..+|.+.-....+. .......+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 468999999998 8999999999999999999995432333444322211110 000122333333221 11110
Q ss_pred -CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---CcccChHH
Q 007952 82 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 137 (583)
Q Consensus 82 -Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~~~ig~~~---~~~LSgGe 137 (583)
.+++.+. ++.....|- + ...|+. |-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 111111110 0 011211 1100 12357788
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEec
Q 007952 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 190 (583)
Q Consensus 138 rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H 190 (583)
+++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .+|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774334455443 45566777766555 46666665
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-06 Score=86.03 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=36.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCcEEEEEecCCC
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQPS 193 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 193 (583)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5788999999863
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.8e-07 Score=83.53 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 56 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~ 56 (583)
+|++++|+||||||||||++.|++... +...|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeecc
Confidence 689999999999999999999998642 2245555443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-06 Score=85.61 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=84.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.-|+++.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.=+ ++..+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHHHH
Confidence 35777777799999999999999999999988875221 111 134444422 3433322
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+.......+++.+..+ | . ..||.+|++|+..|...+.++++++.|+|...
T Consensus 113 ------------------~R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 ------------------KRLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp ------------------HHHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred ------------------HHHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 22222222222222211 0 0 13999999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHC-CcE--EEEEec
Q 007952 168 ALRIVQMLQDIAEA-GKT--VVTTIH 190 (583)
Q Consensus 168 ~~~i~~~l~~l~~~-g~t--ii~~~H 190 (583)
..++.+.+++++++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 45567777777654 666 777765
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=80.94 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=78.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-......+.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~~~~~~~g 166 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIENMAKALG 166 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHHHHHHhC
Confidence 5789999999999999999999999886432111111 1 01235555544322 1222222222211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH-HHHHHHHHHHHH---hCCCEEEEeCCCCCCCH-----
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGLDS----- 165 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG-erqRv~ia~~L~---~~p~illLDEPtsgLD~----- 165 (583)
.+. +++++.+-+ .+..++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 167 ----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~ 223 (324)
T 2z43_A 167 ----LDI-------DNVMNNIYY------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR 223 (324)
T ss_dssp ----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT
T ss_pred ----CCH-------HHHhccEEE------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc
Confidence 111 112222111 1122333 235677777777 57999999999975532
Q ss_pred ---HH----HHHHHHHHHHHHHC-CcEEEEEecC
Q 007952 166 ---TT----ALRIVQMLQDIAEA-GKTVVTTIHQ 191 (583)
Q Consensus 166 ---~~----~~~i~~~l~~l~~~-g~tii~~~H~ 191 (583)
.. ..+++..|++++++ +.+||++.|-
T Consensus 224 g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 224 ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24555666666654 8899988774
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-06 Score=97.58 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=75.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|....+ +.++.+++..|...+... +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 4567899999999999999999999999643221346777 55654432 123445555554332211 1100
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
...|+. |.. .++ .......-..+..++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 011211 100 111 112222235678889999 9999998776
Q ss_pred HHHHHHHHHHHCCcEEEEEecCCC
Q 007952 170 RIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 170 ~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+.++.+.+.+.++|++.|..+
T Consensus 117 ---~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ---RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ---HHHHHHHHTTCCEEEEEECGG
T ss_pred ---HHHHHHHHccCCEEEEecCCc
Confidence 333444446888888888754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.99 E-value=5.7e-06 Score=84.34 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=44.3
Q ss_pred cChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--EEEEEecCCChHHHhhcCeE
Q 007952 133 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 133 LSgGerqRv~ia~~L~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~~H~~~~~i~~~~D~v 203 (583)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+- ..+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898887 4566666 68999999 7899877 67788888888764 43 555666663 3455566654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-06 Score=83.68 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=36.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
-+-+...++|++++|.|+||||||||+++|+|. +|+|.+++.|.
T Consensus 11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344556689999999999999999999999984 58898888764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.9e-07 Score=88.31 Aligned_cols=40 Identities=40% Similarity=0.611 Sum_probs=35.9
Q ss_pred cccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 5 EEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 457799999999999 9999999999999999999999843
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.91 E-value=6e-05 Score=76.00 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCcEEEEEecCCC---hHH
Q 007952 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQPS---SRL 196 (583)
Q Consensus 134 SgGerqRv~ia~~L~~~p~illLDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~~H~~~---~~i 196 (583)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998776532 22234444443321 2356788888753 344
Q ss_pred HhhcCeEEEE
Q 007952 197 FHKFDKLILL 206 (583)
Q Consensus 197 ~~~~D~v~~L 206 (583)
.+-||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556665444
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.5e-06 Score=80.17 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|++++|+||||||||||++.|++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.5e-06 Score=76.32 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=31.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
.+|++++|+|||||||||+.+.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 469999999999999999999999842 6778877654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.78 E-value=9.4e-06 Score=77.51 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
....+|++++|+||||||||||++.|.+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 334589999999999999999999999854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=76.19 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--++++|++++|+|+||||||||.+.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467889999999999999999999999853
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-06 Score=88.02 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhCCCC
Q 007952 6 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLM 45 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge------~~~i~G~nGaGKSTLl~~l~g~~~ 45 (583)
++..|++++..+..++ ++||+||||||||||+++|.+.+.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456777777777776 999999999999999999998653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.2e-05 Score=79.52 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=94.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
-|+.+.+=+++|+++.|.|++|+|||||..-++.... ...| ..+.|+.=+ ++..+...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHHHHH
Confidence 4666666799999999999999999999988886321 0011 113332221 22222221
Q ss_pred H--HHHcCCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeC
Q 007952 89 Y--AALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDE 158 (583)
Q Consensus 89 ~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDE 158 (583)
- +.....+ ..++.++ .+++.+.++.+.-.+ -.+- ...++|..+.+ +.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~--d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYID--DTPDLTLMEVR--ARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEE--CCTTCBHHHHH--HHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEcC
Confidence 0 1111110 0123333 233444444432111 1111 12356766653 4455555 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHHC-CcEEEEEecC-----------CC-------hHHHhhcCeEEEEcC
Q 007952 159 PTSGLDS----------TTALRIVQMLQDIAEA-GKTVVTTIHQ-----------PS-------SRLFHKFDKLILLGK 208 (583)
Q Consensus 159 PtsgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H~-----------~~-------~~i~~~~D~v~~L~~ 208 (583)
.+.=.+. ....++.+.|+.++++ +.+||+++|- |. ..+.+.+|.|+.|..
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8764432 1235677888888765 8999999883 21 024567888888853
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.67 E-value=8e-06 Score=77.94 Aligned_cols=42 Identities=38% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~ 59 (583)
..++|++++|+|+||||||||++.|++.+. +.+|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 357899999999999999999999998552 245777766544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.1e-06 Score=85.30 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999743
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.3e-05 Score=70.27 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=26.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4566777766 99999999999999999987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.7e-05 Score=78.84 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++++||+||||||++..|++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.7e-05 Score=75.04 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999843
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.2e-05 Score=88.56 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=35.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEE-ECCccC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SIT-YNDHPY 60 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~-~~g~~~ 60 (583)
.+++|++++|+|+||||||||+++|+|++. +.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999763 3454 674 887654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=9.7e-06 Score=75.57 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc--EEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G--~I~~~g~~~ 60 (583)
++|++++|+|++||||||+.+.|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHH
Confidence 4799999999999999999999998542 1 35 566666544
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00035 Score=68.85 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345556666666 8899999999999999999843
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6e-06 Score=79.82 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=40.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEE--------CCccCCc-----cccccEEEEccCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 75 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~--------~g~~~~~-----~~~~~i~yv~Q~~ 75 (583)
+.+++|+|||||||||+.+.|++.+.. ..++|++.. +|.++.+ ..++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999975321 135688776 6665542 2456688888764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.47 E-value=4.9e-05 Score=70.63 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.5e-05 Score=70.27 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999854
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=3.1e-05 Score=75.63 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 134 SGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 134 SgGerqRv~ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++---+...+.++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 456555543 33578899999999976 6887766555555544333334566554333444555554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=64.72 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecC
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQ 191 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~ 191 (583)
.+|+++++..+.+.++......+..+++.+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886655554444433221 3578888883
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00027 Score=66.82 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.-+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999743
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.30 E-value=1.9e-05 Score=81.97 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=39.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g 57 (583)
.+.+++++++..++|.+++|+|++|||||||++.|++... +.+|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEe
Confidence 3467889999999999999999999999999999998542 2345554433
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.29 E-value=9.6e-05 Score=78.98 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+|++++|+|||||||||||++|++..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 557789999999999999999999999855
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00081 Score=68.61 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=35.5
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 148 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 148 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
..+|++|++||+.. .-|...+..+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447888899999988877877877777543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.29 E-value=9e-05 Score=72.35 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=26.4
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 9 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 9 iL~~vs~~i~---~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
=|.++|++++ +|.+++|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4778888887 99999999999999999999999865
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=69.46 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 4566777765 999999999999999999873
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0037 Score=64.99 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999988875
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0016 Score=66.55 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+-+++|+++.|.||+|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999988874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=76.29 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=37.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC----------CCcccEEEECCccCC----ccccccEEEEccCCCCCCCCCHHHHH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~----------~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.++|+|+||+|||||+|.|+|.... .+..|.+.++|+++. ...++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999996420 134688999987541 12233344444544444444444444
Q ss_pred H
Q 007952 88 T 88 (583)
Q Consensus 88 ~ 88 (583)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=69.04 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcE-EEEEecCC
Q 007952 149 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQP 192 (583)
Q Consensus 149 ~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~~H~~ 192 (583)
.+|.++++||...-- +...+..+.+.+.+..+.++. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233377788888887776665 77777754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00045 Score=74.12 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-|+.+.+=+++|+++.|.|++|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555555689999999999999999999887775
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.20 E-value=4.3e-05 Score=84.25 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=38.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 58 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~ 58 (583)
.+++++++++ +|+.++|+||||+|||||+++|++... +..|+|..+|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567778888 899999999999999999999998653 34677776664
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00075 Score=65.53 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .+..++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 366677777778999999999 56677888999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00059 Score=68.10 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999743
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0001 Score=76.59 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
+++.+++|+|++|||||||+|.|+|... +.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 4588999999999999999999998542 3456776655543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00048 Score=64.49 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35789999998888 5689999999999999999974
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00017 Score=68.17 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 4568899999988885 689999999999999999874
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00034 Score=66.56 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999999754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00038 Score=65.13 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999964
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=63.39 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0057 Score=63.42 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..-+.|.||+|+|||||.++|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999974
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0045 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44456889999999999999999974
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00022 Score=68.31 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc--EEEECCcc
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 59 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G--~I~~~g~~ 59 (583)
..+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3467899999999999999999999998542 2356 67777544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0006 Score=71.32 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888876 99999999999999999986
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00038 Score=72.70 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=30.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
|+++.+.+||.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999863
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=68.35 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999743
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00046 Score=73.47 Aligned_cols=46 Identities=22% Similarity=0.047 Sum_probs=38.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
++++++ +|++++++|+|||||||++..|++.+. ..+|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 577887 899999999999999999999998653 3467888877654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00062 Score=64.38 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00019 Score=74.98 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+++++++.| +|+|+||+|||||++.|.|.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 355678888876 99999999999999999884
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00023 Score=73.70 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCC
Q 007952 8 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578888999999998 9999999999999999999854
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.022 Score=58.09 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678999999999999999999743
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00027 Score=72.87 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.7
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCC
Q 007952 6 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678888889999998 9999999999999999999854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00062 Score=67.18 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 344444 567889999999999999999999998542 24567777544
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00034 Score=71.01 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=35.9
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc
Q 007952 11 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59 (583)
Q Consensus 11 ~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~ 59 (583)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998553 235666665544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=61.04 Aligned_cols=29 Identities=41% Similarity=0.548 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..++|.+++|+|++||||||+.+.|++.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999854
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=61.04 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.018 Score=62.50 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=28.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-|+.+.+=+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3455545589999999999999999999877774
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0028 Score=61.43 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 007952 143 IGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 143 ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H 190 (583)
+..++..+|+++++||+-. ..+........+.+..+.+.|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3334457899999999764 23433233333444445567888999988
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++|.|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=68.94 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=33.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---------CCCcccEEEECCc
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 58 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~---------~~~~~G~I~~~g~ 58 (583)
.+-..+..|..++|+|+||+|||||+|.|+|... ..+..|.+.++|.
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455778899999999999999999999998521 1234677777664
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=72.36 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999999863
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=59.30 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|.++.|.|++||||||+.+.|+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0037 Score=63.61 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=29.6
Q ss_pred HhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHh
Q 007952 148 IINPSLLFLDEPT-SGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFH 198 (583)
Q Consensus 148 ~~~p~illLDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~ 198 (583)
+.++++|++||.- ..+|...+.+++. ++......++.+|+||+.+..++..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2445444444554 6655434466788888876555443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0063 Score=62.12 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6788999999999999999999999984
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=60.02 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=60.45 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCc
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 58 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~ 58 (583)
.+++|+|+||||||||++.|.+.+.. ...-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57999999999999999999975321 112355555443
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999974
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.039 Score=57.41 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999987774
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=61.92 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0026 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0029 Score=59.57 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999754
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=55.70 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+.+++++||--- +|+. .++.++++++.|+.||++-+ .+..++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6543 36678888878999999998 55577888999987764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0037 Score=56.72 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007952 22 VLALMGPSGSGKTTLLNLL 40 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l 40 (583)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++++|+||||||||||-+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999743
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=57.44 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0045 Score=59.10 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0045 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0049 Score=58.10 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999999744
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.015 Score=51.87 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
+..++++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45789999965 6788888888888877543456677777654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.004 Score=57.54 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999985
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0044 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999744
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.018 Score=55.17 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+.+++++||--- +|.. .++.++++++.|+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999876 6543 34777887878999999999 67778889999998875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=62.17 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g 57 (583)
-..|.++.|.|||||||||+.+.|+.... .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 34578999999999999999999986431 25566665
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=56.17 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=58.10 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999863
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0048 Score=61.31 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999953
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0056 Score=56.25 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999964
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0054 Score=57.09 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0027 Score=60.18 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999754
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.057 Score=56.42 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.-+.|.||+|+|||+|.+.|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.006 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.065 Score=51.95 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=45.3
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC---------CChHHHhhcCeEEEEc
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 207 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~---------~~~~i~~~~D~v~~L~ 207 (583)
+.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999887654 666666677789999999999 8888999999998874
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0097 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876653
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.054 Score=55.11 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
+=+++| ++.|.||+|+|||||+--++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457889 99999999999999954444
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0069 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999996
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.033 Score=69.25 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=46.6
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-CCcEEEEEecCCCh------
Q 007952 140 RVCIGNEII--INPSLLFLDEPTSGLD-S------------TTALRIVQMLQDI---AE-AGKTVVTTIHQPSS------ 194 (583)
Q Consensus 140 Rv~ia~~L~--~~p~illLDEPtsgLD-~------------~~~~~i~~~l~~l---~~-~g~tii~~~H~~~~------ 194 (583)
-+.+++.++ .+|+++++|.-++=.. + ..+..+.+.|++| ++ .|++||++.|--..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345566654 4799999999876542 1 1234566666666 34 48899998874211
Q ss_pred ---------HHHhhcCeEEEEcCCeE
Q 007952 195 ---------RLFHKFDKLILLGKGSL 211 (583)
Q Consensus 195 ---------~i~~~~D~v~~L~~G~i 211 (583)
.+.+.+|-++.|...+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 35667898888876543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0078 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0075 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0068 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0083 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.012 Score=61.32 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC---------CCCcccEEEECC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 57 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~---------~~~~~G~I~~~g 57 (583)
|-.++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998421 123457777765
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.15 Score=62.64 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=84.7
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 10 LNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 10 L~~vs--~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~---- 426 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I---- 426 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H----
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H----
Confidence 44443 3589999999999999999999887774221 111 23455544432211 0
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDS 165 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDEPtsgLD~ 165 (583)
.+ +.+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..+.=...
T Consensus 427 -~a----------------------~~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 427 -YA----------------------RKLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp -HH----------------------HHTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred -HH----------------------HHcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 01 1122210 000010 0112332 234455554 57999999999876541
Q ss_pred -------------HHHHHHHHHHHHH---H-HCCcEEEEEecCC---------------ChHHHhhcCeEEEEcCCeEEE
Q 007952 166 -------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 166 -------------~~~~~i~~~l~~l---~-~~g~tii~~~H~~---------------~~~i~~~~D~v~~L~~G~iv~ 213 (583)
.....+.+.+++| + +.|++||++.|-. ...+...+|-++.+...+...
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc
Confidence 1233455555555 3 4599999998742 124567889888887654433
Q ss_pred Ec
Q 007952 214 FG 215 (583)
Q Consensus 214 ~G 215 (583)
.|
T Consensus 557 ~g 558 (1706)
T 3cmw_A 557 EG 558 (1706)
T ss_dssp ET
T ss_pred cC
Confidence 33
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0086 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.007 Score=56.05 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999843
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0094 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999863
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0068 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999843
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=59.93 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=31.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788888887 7899999999999999999999873
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0069 Score=56.54 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999863
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0074 Score=54.10 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0094 Score=53.61 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..-+.|.||+|+|||+|.++|+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 44556899999999999999999874
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.009 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0085 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0073 Score=55.61 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0086 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=59.16 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0087 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0061 Score=63.96 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 150 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 150 ~p~illLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999887774 667778888888888889999999998864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0084 Score=55.28 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0081 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999843
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0093 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=60.25 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999953
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0095 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0096 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0095 Score=55.13 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0098 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.01 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999743
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.009 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999743
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999743
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=54.66 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999853
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.021 Score=52.86 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+..++..-..+ .|.-++|.|+||+|||||...|..
T Consensus 3 ~~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 3 AKQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp -CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ccEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456677766555 488999999999999999988875
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.013 Score=55.60 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.011 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+++|.|++||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=54.08 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999863
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.01 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999975
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999974
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999964
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=57.17 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.012 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.012 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0086 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999885
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=58.79 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 59999999999999999999853
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.017 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.012 Score=58.40 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+++-.++|.||+||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++|+|++||||||+-+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.028 Score=53.33 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34566655554 5889999999999999999999964
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.014 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.25 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++++|++|+||||+...|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999644
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=57.42 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|||||||+|.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999743
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.013 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.015 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999743
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.017 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999743
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.013 Score=54.77 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999863
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999999753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999743
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.028 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++|+||+|||||||-..|+.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.016 Score=54.79 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.015 Score=60.54 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999974
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.017 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.017 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999975
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.021 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.015 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.02 Score=56.47 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999974
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.023 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.023 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=55.78 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+..+|.++.+.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998644
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.017 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999999854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.017 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.28 E-value=0.019 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=57.06 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|||||||+|.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.026 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998643
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.017 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.024 Score=54.46 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.019 Score=53.48 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.02 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.027 Score=53.99 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+|.++++.|++||||||+.+.|...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998644
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.012 Score=55.94 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.023 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|..++|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999863
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999843
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.017 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999843
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.026 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.021 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.0072 Score=57.40 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999766 7877777766666432 13567888888754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.026 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999843
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.019 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999853
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.02 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.024 Score=56.79 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+.|.||+|+|||||.++|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 689999999999999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.022 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.014 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++-+++|-||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.029 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..++..++.|+||+||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455668899999999999999999963
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.023 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.023 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.02 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999743
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.022 Score=54.08 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.023 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=56.57 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHh
Q 007952 20 GEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.023 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999974
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.023 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999999743
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.021 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.029 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.=-++|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999974
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.025 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999985
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.03 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.033 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.022 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.033 Score=53.74 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+..+.|+|++||||||+.+.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999863
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.02 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.028 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999985
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999974
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.031 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.++++.|++||||||+.+.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.027 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.024 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--++|+|++|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.019 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.027 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.032 Score=59.05 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+.+++.|+|++||||||+.+.|+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.038 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999643
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.039 Score=59.08 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=27.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++.+ ..+-+|+..+|+|+||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 34444 45668999999999999999999999863
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.028 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.026 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.031 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.046 Score=52.63 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=39.4
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh---------HHHhhcCeEEEEc
Q 007952 148 IINPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 207 (583)
Q Consensus 148 ~~~p~illLDEPts----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~---------~i~~~~D~v~~L~ 207 (583)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788899886432 12455567778888887765 9999999885321 1234577777774
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.036 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.++.+.|++||||||+.+.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998754
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.036 Score=53.32 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|.++.+.|++||||||+.+.|...+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999999755
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.036 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999973
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.032 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.042 Score=53.08 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+|.++++.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998644
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.036 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999744
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.49 E-value=0.029 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.043 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.019 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.038 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999854
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.033 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.046 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.|+||+||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999963
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.24 E-value=0.031 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998754
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.014 Score=59.66 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+++++++|| ...+++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776543 345666776654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.047 Score=55.75 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999743
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.042 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999743
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.027 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.=-++++|++|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999976
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.11 E-value=0.02 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.041 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.038 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.047 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.039 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.04 Score=59.03 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 191 (583)
.+++....+...+.+++++++.... .++... ...+.+.++ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEEC
Confidence 3666667777778888877665544 455544 345555554 357777777765
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.22 Score=56.84 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+.||+|+|||+|.++|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999974
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.061 Score=54.52 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 458999999999999999999964
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.19 Score=62.62 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=30.9
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 8 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 8 ~iL~~vs--~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577887 5899999999999999999999998873
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.048 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.049 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999954
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.047 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.02 Score=56.28 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=22.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+.| +.|.||+|+|||||.++|++.
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 344445 779999999999999999974
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.068 Score=49.82 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~ 207 (583)
+++++++||--. +|+ ++++.|++++++|..|+++-++.+ ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 443 366778888888999999888433 34455677775553
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.065 Score=56.28 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.+++|+||+|||||||.+.|+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 357899999999999999999964
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.075 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999854
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.21 Score=53.81 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=52.2
Q ss_pred CcccChHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 130 VRGVSGGERKRVCIGN--EIII---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~--~L~~---------------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
..+.||||+|-.-+|+ +++. .-.++++||. +-+|...+...+++++++ |.=+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 5689999999644433 3332 1247999999 999999999999999976 6666666633
Q ss_pred ChHHHhhcCeEEEEc
Q 007952 193 SSRLFHKFDKLILLG 207 (583)
Q Consensus 193 ~~~i~~~~D~v~~L~ 207 (583)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3556778887764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.07 Score=56.12 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 107 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45566666665432 236889998888777666779999887
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.087 Score=53.21 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.078 Score=47.07 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+..+|++||.- .|++..+..+.+.|+.. .....+|++++.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 45689999984 68888888888888332 22456777777643
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.086 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
--+||+|++||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999863
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.087 Score=49.07 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6889999995 4567777777766665532 345677777664
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.032 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998876
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.073 Score=56.58 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.094 Score=52.42 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999988643
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.12 Score=49.18 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|..+++=|+-||||||+.+.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999755
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.11 Score=53.63 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998643
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.022 Score=53.15 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.086 Score=58.25 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--.++|+|++|+|||||+|.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3468999999999999999999953
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=91.17 E-value=0.06 Score=50.98 Aligned_cols=21 Identities=48% Similarity=0.820 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHH-HhC
Q 007952 22 VLALMGPSGSGKTTLLNL-LSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~-l~g 42 (583)
-++|+|++|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 555
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.075 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|=.++|+|++|+|||||+|.|.|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.12 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999963
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.09 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3567899999999999999999984
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=90.92 E-value=0.11 Score=53.50 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.++++----++|+|.++||||||++.|++.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554445899999999999999999873
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.1 Score=57.36 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999953
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 583 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-42 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-40 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-39 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-38 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-36 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-36 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-32 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-30 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-29 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-27 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-24 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-10 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 8e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 6e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.001 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 149 bits (377), Expect = 5e-42
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
E L + ++ GE +++MGPSGSGK+T+LN++ L +PT G + ++ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPT-EGEVYIDNIKTN 70
Query: 62 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 113
K + KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
LE +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 174 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216
+L+ + E GKTVV H + + +++I L G + K
Sbjct: 187 LLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 145 bits (367), Expect = 1e-40
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 63
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPP 75
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
I V Q ++PH+TV E + + ++ K + +KR L +E +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN- 131
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 182
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + +
Sbjct: 132 ----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
T + H D++ ++ +G LL G +E
Sbjct: 188 VTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (367), Expect = 4e-40
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66
+L I ++ GE+LA+ G +GSGKT+LL L+ G +E + G I ++
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEAS-EGIIKHSG--------- 97
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
++ F +Q + P T+KE + + + K + +T++G
Sbjct: 98 RVSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
V +SGG+R R+ + + + L LD P LD T ++ + A KT +
Sbjct: 154 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ K DK+++L +GS ++G SE +
Sbjct: 213 LVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (361), Expect = 1e-39
Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
++L G++ G+V++++G SGSGK+T L ++ +E G+I N +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNINLVRD 71
Query: 62 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 108
+ L++++ V Q L+ H+TV E + A + L L+K +RA
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERA 129
Query: 109 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168
+ + ++G++ G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 130 LKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 169 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+++++Q +AE GKT+V H+ H +I L +G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 138 bits (350), Expect = 5e-38
Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 17/225 (7%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 62
E IL I S+ GE +A +G SG GK+TL+NL+ R + T G I + H
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKDF 85
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GL 117
SL+++IG V Q D + TVKE + + + K A D I L G
Sbjct: 86 LTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 144
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
DT +G V+ +SGG+++R+ I + NP +L LDE TS LD + I + L
Sbjct: 145 ----DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 199
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+++ +T + H+ S+ DK++++ G ++ G E +A
Sbjct: 200 LSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHRELIA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (347), Expect = 1e-37
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 14/226 (6%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
+ + +L G+T ++ PGEV AL+GP+GSGK+T+ LL L +PT GG + + P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNLYQPT-GGQLLLDGKPLPQ 80
Query: 62 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-LPNTLTKQQKEKRAIDVINELGL 117
+ L ++ V Q+ +F +++E + Y + +T + A I+ GL
Sbjct: 81 YEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GL 137
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ DT + +SGG+R+ V + +I P +L LD+ TS LD+ + L++ Q+L +
Sbjct: 138 PQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 178 IAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
E ++V+ S L + D ++ L G++ G + M
Sbjct: 197 SPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 133 bits (337), Expect = 2e-36
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 13/224 (5%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
+ IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLAL 69
Query: 63 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
L+ ++G V QD+VL ++ + ++ A + K A D I+EL
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREG 128
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
G+ G+SGG+R+R+ I ++ NP +L DE TS LD + I++ + I
Sbjct: 129 YNTIVGEQGA---GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ G+TV+ H+ S D++I++ KG ++ GK E ++
Sbjct: 186 CK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (338), Expect = 2e-36
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 61
E L I + G+ +AL+G SGSGK+T+ +L++ G I + H
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FYDIDEGHILMDGHDLREY 82
Query: 62 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GL 117
SL++++ V+Q+ LF + + + A+D IN++ GL
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL 142
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
DT+IG +SGG+R+R+ I ++ + +L LDE TS LD+ + I L +
Sbjct: 143 ----DTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + +T + H+ S + D+++++ G ++ G SE +A
Sbjct: 198 LQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 131 bits (330), Expect = 6e-36
Identities = 44/186 (23%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN P +K +K
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNGVPITK-VK 69
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
KI F+ ++ ++ ++V++ L A L + + +D + + + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKK--- 121
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKT 184
+ +S G +RV + + +++N + LD+P +D + ++++ + +I E G
Sbjct: 122 ---KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 185 VVTTIH 190
++++
Sbjct: 179 IISSRE 184
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (335), Expect = 6e-36
Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 23/229 (10%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KS 63
L+G++ SVN G+V ++GP+GSGK+TL+N+++G ++ G + + + + +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG-FLKAD-EGRVYFENKDITNKEPAEL 76
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVIN 113
I Q +TV E L + + L +++ ++A ++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 137 FLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 174 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ ++ G T + H+ + + D L ++ G ++ G+ E +
Sbjct: 192 HVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 132 bits (333), Expect = 8e-36
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 12/222 (5%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+ + IL I+ P ++A GPSG GK+T+ +LL +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQPT-AGEITIDGQPIDNIS 70
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
++ +S+IGFV+QD + T++E LTY + Q + E ++
Sbjct: 71 LENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+ G +SGG+R+R+ I + NP +L LDE T+ LDS + + + L + +
Sbjct: 130 NTEV--GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G+T + H+ S+ DK+ + KG + GK +E +A
Sbjct: 188 -GRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 128 bits (324), Expect = 2e-34
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61
+ LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELT 70
Query: 62 K-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
+ +IG + Q L TV + L K + ++R ++++
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 127
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
+GL D S+ +SGG+++RV I + NP +L DE TS LD T I+++
Sbjct: 128 VGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 175 LQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
L+DI G T++ H+ + D + ++ G L+ SE
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 127 bits (320), Expect = 4e-34
Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 62
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPH 71
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
++ I ++ ++ + ++ E L + A + + E+ GL
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 129 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226
T++ + H + D++ L+ G+++ G E + +
Sbjct: 184 LTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 122 bits (308), Expect = 2e-32
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPY 60
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPA 75
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLER 119
+ I V + +FP LTV E L A R K+ ++ + + L+
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKE 131
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
+SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ G T++ +L G ++ GKASE
Sbjct: 187 QEGTTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKASE 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 120 bits (301), Expect = 2e-31
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 61
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 67
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L +++Q V LT + + + DV L L+
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDD-- 117
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEPTSGLDSTTALRIVQM 174
G +SGGE +RV + ++ LL LDEP + LD + ++
Sbjct: 118 ---KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L + + G +V + H + L H + LL G +L G+ E +
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVLT 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 115 bits (290), Expect = 6e-30
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 20/223 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E + ++ V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEK 72
Query: 66 SK--------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+
Sbjct: 130 TELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 178 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ G T + H D++ ++ +G L G E
Sbjct: 185 LQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 115 bits (288), Expect = 8e-30
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 63
E + I ++ GE + +GPSG GK+TLL +++G +E G + + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPP 69
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
+ +G V Q L+PHL+V E +++ L K+ +R V L L D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK---KEVINQRVNQVAEVLQLAHLLD- 125
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 182
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ +++ + + G
Sbjct: 126 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+T++ H DK+++L G + GK E
Sbjct: 182 RTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (281), Expect = 8e-29
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 17/213 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSK 67
L+ ++ V GE ++GP+G+GKT L L++G G I + + K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDGKDVTDLSPEKHD 73
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
I FV Q+ LFPH+ VK+ L + + K + KR +D +L +E D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLDTARDLKIEHLLD----- 122
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVV 186
+SGGE++RV + ++ NP +L LDEP S LD T +ML + + TV+
Sbjct: 123 RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
H + D++ ++ G L+ GK E
Sbjct: 183 HITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 108 bits (271), Expect = 2e-27
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG------SITYNDHPYSK 62
L+ + ++ GE ++GPSG+GKTT + +++G L P+ G + N
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVP 78
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
KIG V Q L+P+LT E + + ++K++ KR +V L + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
R +SG +++RV + ++ +PSLL LDEP S LD+ +++++
Sbjct: 136 HFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 191 GVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 98.9 bits (246), Expect = 5e-24
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KSLKSKIGFVTQDDV 76
+ L+GP+G+GK+ L L++G +++P G + N + + IGFV QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 136
LFPHL+V + Y + + ++++R ++ E+ + +SGG
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREM-----AEKLGIAHLLDRKPARLSGG 130
Query: 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSR 195
ER+RV + ++I P LL LDEP S +D T +++ L+ + ++ H
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE- 189
Query: 196 LFHKFDKLILLGKGSLLYFGKASE 219
D++ ++ G ++ GK E
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 19/194 (9%), Positives = 45/194 (23%), Gaps = 34/194 (17%)
Query: 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82
+ + G G GKTTL+ + + G ++V P
Sbjct: 3 IIITGEPGVGKTTLVKKIVE-RLGKRAIG-------------------FWTEEVRDPETK 42
Query: 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142
+ + + + + + ++ +
Sbjct: 43 KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-----------ELAIPILERA 91
Query: 143 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 202
++ +DE + + Q + + VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKK-FRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 203 LILLGKGSLLYFGK 216
+ L L+
Sbjct: 149 IRRLPGAVLIELTP 162
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.5 bits (96), Expect = 8e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59
G V+ L GPS GK+T++ L R+ P + S++
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI--PNLHFSVSATTRA 39
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 15/93 (16%), Positives = 30/93 (32%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 79
++ L G S +GK+ ++ L L EP + + ++S G + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ + A + + DV
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVF 95
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTV 49
G +L L G GSGK+T+ L+ P V
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKV 33
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIII---NPS-LLFLDEPTSGLDSTTALRIVQML 175
+ + +SGGE+ + I PS LDE + LD T RI +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204
+ + + +F K D L+
Sbjct: 380 RRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59
G + + PSG+GK++L+ L S+++
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 41
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 7e-04
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 79
+ L GP G GKTTL++ S L V G T + + + ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--ERCQDTMIGGSFVRGVSGGE 137
+ ++ + E+ A+ V+ Q + + +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV-IDEIGKMELFS 121
Query: 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+ + + + P + L AL V+ +++ + VT +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLAL--VEEIRNRKDVKVFNVTKEN 172
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 58
+LA SG+GKTTLL L L + + + H
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (87), Expect = 0.001
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57
+ + LMG SGSGK+ + + ++ +L + G +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 37.8 bits (86), Expect = 0.001
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLME 46
G + L G SGK + L L +
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.8 bits (86), Expect = 0.001
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60
VL + G S SGKTTL N LS L E + + + D
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPY 60
+ + GP SGKT+LL LL+ + PTV + Y+
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGV 48
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 0.002
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---TYNDH 58
+ E IL+ IT + V+A++G +GK+ L+N L+G+ ++G ++ T
Sbjct: 17 ANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW 73
Query: 59 PYSKSLKSKIGFVT 72
+ K G +
Sbjct: 74 MWCVPHPKKPGHIL 87
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 62
G + L G SG+GKTT+ L L+ + D+
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.57 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.26 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.2 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.83 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.08 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.92 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.58 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.41 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.26 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.17 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.13 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.12 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.12 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.08 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.75 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.7 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.6 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.53 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.45 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.41 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.4 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.34 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.17 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.16 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.15 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.15 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.13 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.06 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.03 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.02 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.97 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.92 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.89 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.87 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.86 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.83 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.78 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.71 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.64 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.54 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.53 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.49 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.49 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.47 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.47 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.46 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.38 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.3 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.21 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.2 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.13 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.12 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.11 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.04 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.87 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.74 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.74 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.73 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.62 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.39 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.38 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.37 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.36 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.3 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.3 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.27 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.2 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.17 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.13 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.12 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.1 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.02 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.97 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.78 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.77 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.73 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.73 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.69 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.58 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.51 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.48 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.46 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.45 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.45 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.45 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.44 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.31 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.28 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.25 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.22 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.22 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.07 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.02 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.94 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.92 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.88 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.84 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.71 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.7 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.55 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.41 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.17 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.97 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.91 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.88 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.88 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.86 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.79 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.78 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.73 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.71 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.68 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.61 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.49 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.37 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.32 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.24 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.18 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.12 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.05 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.15 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.67 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.62 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.29 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.84 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.68 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.59 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.22 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.2 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.19 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.46 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.46 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.38 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.37 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.81 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.43 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.28 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.02 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.12 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.65 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.11 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.92 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.93 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.31 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.04 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.73 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.69 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.47 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.29 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.06 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-54 Score=425.86 Aligned_cols=208 Identities=26% Similarity=0.472 Sum_probs=183.2
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+.+++.+|+||||++++||+++|+||||||||||+|+|+|... |++|+|.+||+++.+ ..+++||||||++.+||+
T Consensus 15 ~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 92 (239)
T d1v43a3 15 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 92 (239)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred EECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEEeechhhccc
Confidence 3567899999999999999999999999999999999999763 679999999998863 346779999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.|.+..+ ..++++.+++++++++.+||++..|+ ++.+|||||||||+|||||+.+|++|+|||||
T Consensus 93 ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt 164 (239)
T d1v43a3 93 MTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 164 (239)
T ss_dssp CCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred chHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence 99999999876543 46788999999999999999987775 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++.++++.|++++++ |+|||++|||+. ++.++||||++|++|++++.|+++++.
T Consensus 165 s~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999765 999999999965 588999999999999999999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.2e-54 Score=421.15 Aligned_cols=209 Identities=29% Similarity=0.490 Sum_probs=189.9
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQD 74 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~ 74 (583)
+.+++.+|+||||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..+++||||+|+
T Consensus 12 ~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~ 89 (240)
T d1g2912 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhcccccccceecccc
Confidence 3467889999999999999999999999999999999999763 689999999988632 125779999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.++|.+||+||+.++...+ ..++++.+++++++++.+||++..+. ++++|||||||||+|||||+++|++|
T Consensus 90 ~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~-----~p~~LSGGqkQRv~IAraL~~~P~iL 161 (240)
T d1g2912 90 YALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVF 161 (240)
T ss_dssp CCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred hhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998765 46788899999999999999987765 57899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++.++++.|+++.++ |+|||++|||+. ++.++||||++|++|++++.|+++++.+
T Consensus 162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999766 999999999964 5889999999999999999999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-54 Score=424.03 Aligned_cols=209 Identities=28% Similarity=0.483 Sum_probs=153.9
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+.+++++|+||||++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ ..++.||||||++.++|.
T Consensus 9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (232)
T d2awna2 9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 86 (232)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeeccccccccc
Confidence 4567889999999999999999999999999999999999653 679999999998863 346789999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.|+...+ ..++++.+++++++++.++|++..++ ++++|||||||||+|||||+.+|++|+|||||
T Consensus 87 ~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~-----~~~~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 87 LSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp ---------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTT
T ss_pred hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999986644 34567778899999999999988776 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus 159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999965 5999999999964 6889999999999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.5e-54 Score=420.66 Aligned_cols=207 Identities=28% Similarity=0.504 Sum_probs=187.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
++..+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++.+ ..++++|||+|++.+
T Consensus 16 g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 45689999999999999999999999999999999999653 679999999998632 235779999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+|.+||+||+.|++..+ ..++++.+++++++++.+||++..|. ++.+|||||||||+|||||+++|++|++|
T Consensus 94 ~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~p~~LSGGqkQRvaiARaL~~~P~llllD 165 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLD 165 (242)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhC-----ChhhCCHHHHhHHHHHhHHhhcccceeec
Confidence 99999999999986543 46788889999999999999887775 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+|||+.++.++++.|+++.++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus 166 EPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999655 999999999965 5789999999999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-53 Score=417.47 Aligned_cols=203 Identities=26% Similarity=0.433 Sum_probs=184.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~~ 80 (583)
++|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++.. .+|+++|||||++.++|.
T Consensus 19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC
Confidence 68999999999999999999999999999999999653 679999999998742 245679999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.++...+ ..++++.+++++++++.+||++..+. ++++|||||||||+|||||+.+|++|||||||
T Consensus 97 ~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~-----~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt 168 (240)
T d3dhwc1 97 RTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (240)
T ss_dssp SBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSS-----CBSCCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHhhhhccCCCeEEecccc
Confidence 99999999987654 35667788899999999999987765 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++.++++.|+++.++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus 169 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 169 SALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred ccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999776 999999999964 578899999999999999999999873
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.6e-53 Score=409.90 Aligned_cols=200 Identities=31% Similarity=0.503 Sum_probs=180.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+ ..++.+|||+|++.+||++||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 58999999999999999999999999999999999653 679999999999864 24678999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.|+...+.- . .+++++++++.++|++..|+. +.+|||||||||+|||||+++|++|+|||||+|||+
T Consensus 92 nl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCC-----hhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCH
Confidence 99998876431 2 135789999999999887764 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 166 TTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.++.++.+.|+++.+ .|.|||++|||+. ++.++||||++|++|++++.|+++++.
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999975 4999999999965 588999999999999999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-52 Score=408.00 Aligned_cols=202 Identities=30% Similarity=0.477 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~~~~ 78 (583)
..+|+||||+|++||+++|+|||||||||||++|+|... +++|+|+++|+++.. + .+++||||+|++.++
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~ 95 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhC
Confidence 358999999999999999999999999999999999653 689999999998753 1 135699999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|.+||+||+.++...+.....+.++..+++.++++.+||.+ ..+ .++.+|||||||||+|||||+++|++|+||
T Consensus 96 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~p~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp TTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhc-----CChhhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 99999999999987765555678888889999999999975 344 357899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
|||+|||+.++.++++.|+++.++ |+|||++|||+. . .++||||++|++|++++.|++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999765 999999999964 3 479999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-51 Score=404.65 Aligned_cols=224 Identities=25% Similarity=0.400 Sum_probs=199.3
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~ 79 (583)
+.+++++|+|+||++++||++||+||||||||||+|+|+|... |++|+|.++|+++.+ ..++.+|||||++.+++
T Consensus 11 ~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~ 88 (238)
T d1vpla_ 11 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 88 (238)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred EECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeEeeeccccCC
Confidence 4577899999999999999999999999999999999999763 679999999998753 35678999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
++||.||+.|...++ ..++++.+++++++++.++|.+..+.+ +++||||||||++||+||+++|++|+||||
T Consensus 89 ~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lSgG~~qrv~iA~al~~~p~illLDEP 160 (238)
T d1vpla_ 89 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDEP 160 (238)
T ss_dssp TSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhh-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999999987764 246777888899999999999887765 569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad 239 (583)
|+|||+.++.++.+++++++++|+|||++||++. ++..+||||++|++|++++.|+++++.+.+. ..|..+
T Consensus 161 t~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~~~~--------~~~~~~ 231 (238)
T d1vpla_ 161 TSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYK--------AQNIEE 231 (238)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHHHTT--------CSSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhccC--------CchHHH
Confidence 9999999999999999999999999999999965 6889999999999999999999999976543 245666
Q ss_pred HHHHhh
Q 007952 240 FLLDLA 245 (583)
Q Consensus 240 ~~~~~~ 245 (583)
.+.+++
T Consensus 232 ~f~~~~ 237 (238)
T d1vpla_ 232 VFEEVV 237 (238)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666553
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5e-51 Score=406.79 Aligned_cols=211 Identities=27% Similarity=0.474 Sum_probs=187.2
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccc
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLK 65 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~ 65 (583)
+.+++++|+||||++++||++||+||||||||||+|+|+|... +++|+|.++|+++.. ..+
T Consensus 11 ~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r 88 (258)
T d1b0ua_ 11 RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 88 (258)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred EECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccccHhHHHHHh
Confidence 3467889999999999999999999999999999999999653 679999999998741 235
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+++|||+|++.++|.+||.||+.++.... ...++++.++++.++++.+||.+... ++++.+|||||||||+|||
T Consensus 89 ~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~p~~LSGG~~QRv~iAr 162 (258)
T d1b0ua_ 89 TRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIAR 162 (258)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHH----TSCGGGSCHHHHHHHHHHH
T ss_pred cceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhh----ccCcccccHHHHHHHHHHH
Confidence 67999999999999999999999875322 23567888899999999999976432 2346799999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|+.+|++|+|||||+|||+.++.++++.|++++++|+|||++|||+. ++.++||||++|++|++++.|+++++..
T Consensus 163 aL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999999999999965 5788999999999999999999999853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4e-51 Score=400.28 Aligned_cols=197 Identities=27% Similarity=0.494 Sum_probs=178.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
||||+++ +|+++|+||||||||||+|+|+|.+. |++|+|.+||+++.+ ..+++||||||++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999985 68999999999999999999999763 679999999998863 346789999999999999999999998
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
+. + ..++++.+++++++++.+||.+..+. ++++|||||||||+|||||+++|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 35678888999999999999987775 46899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 170 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 170 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
.+.+.+++++++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 999999999765 999999999965 6889999999999999999999999863
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.4e-51 Score=401.91 Aligned_cols=207 Identities=26% Similarity=0.415 Sum_probs=180.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-----ccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-----LKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-----~~~~i~yv~Q~~~~ 77 (583)
+.+++.+|+||||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++... .+..++|+||+..+
T Consensus 15 ~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l 92 (240)
T d1ji0a_ 15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred EECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHHHhcccccCccccc
Confidence 3567889999999999999999999999999999999999753 6799999999987531 24459999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|+.+||+||+.+.+..+. .++..++.++++++.+ ++++..++ .+.+|||||||||+|||||+++|++|+|
T Consensus 93 ~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~LSGG~~Qrv~iAraL~~~P~lLll 163 (240)
T d1ji0a_ 93 FPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence 999999999988664332 2334455567777766 67776665 4579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++.++++.|++++++|+|||++||+.. ++.++||||++|++|++++.|+++++.
T Consensus 164 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999999999999964 688999999999999999999999975
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.9e-50 Score=402.78 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=185.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~ 77 (583)
+.+++++|+||||++++||++||+||||||||||+|+|+|... +++|+|.++|+++.. + .++.|+|+||++.+
T Consensus 13 ~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~ 90 (254)
T d1g6ha_ 13 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 90 (254)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred EECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHHHhcCCccCCcccc
Confidence 3567889999999999999999999999999999999999753 679999999998753 1 24459999999999
Q ss_pred CCCCCHHHHHHHHHHcCC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 78 FPHLTVKETLTYAALLRL----------PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
++.+||+||+.++...+. .....+++..+++.++++.+++.+..++. +.+|||||||||+|||||
T Consensus 91 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~Qrv~iAraL 165 (254)
T d1g6ha_ 91 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRAL 165 (254)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHH
T ss_pred CCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc-----hhhCCcHHHHHHHHHHHH
Confidence 999999999988643221 11123445667889999999999877764 569999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+.+|++|+|||||+|||+.++.++++.|++++++|+|||++|||.. ++.++||||++|++|++++.|+++|..+
T Consensus 166 ~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 166 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 9999999999999999999999999999999989999999999976 5889999999999999999999988654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-48 Score=385.33 Aligned_cols=206 Identities=29% Similarity=0.495 Sum_probs=169.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+||||+|++||.+||+||||||||||+++|+|... +.+|+|.+||+++.. .+|++++||+|++.+|+
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEecccchhhhhceEEEEecccccCC-
Confidence 45679999999999999999999999999999999999653 679999999998853 46788999999999886
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAID--VINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~--~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
.||+||+.++. ...+.++..+..+. +.+.+ .+....++.+|. .+..|||||||||+|||||+.+|++|+||
T Consensus 91 ~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililD 164 (241)
T d2pmka1 91 RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 164 (241)
T ss_dssp SBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred ccccccccccC-----ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhh
Confidence 59999998742 12333332222111 11111 233445666653 46889999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+||+.++..+++.|+++.+ |+|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 165 Epts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 165 EATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999865 8999999999753 47899999999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-48 Score=385.32 Aligned_cols=203 Identities=31% Similarity=0.521 Sum_probs=170.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+.+.+|+||||++++||++||+||||||||||+++|+|... |.+|+|.+||+++.+ .+|++||||+|++.+|+.
T Consensus 13 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 90 (242)
T d1mv5a_ 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90 (242)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE
T ss_pred CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc
Confidence 45789999999999999999999999999999999999663 679999999998753 467889999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
||+||+.+... ...+.++. .+.++..+ +.+..++.+|. ...+|||||||||+|||||+.+|+|
T Consensus 91 -ti~eNi~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 91 -TIRENLTYGLE----GDYTDEDL----WQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp -EHHHHTTSCTT----SCSCHHHH----HHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred -chhhheecccc----cccchhhH----HHHHHHHHhhhhhccCcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999976422 12233332 23333333 23445566653 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++..+++.|++++ +|+|||++||+++ .+ +.||+|++|++|++++.|+++++++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~~-~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999997 4999999999974 34 5699999999999999999999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-48 Score=383.05 Aligned_cols=205 Identities=29% Similarity=0.487 Sum_probs=170.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+||||+|++||++||+||||||||||+++|+|... |.+|+|.+||+++.. .+++.++||+|++.+|+ .
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 102 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-R 102 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEecchhhhHHHHHHhhhccccccccC-c
Confidence 4579999999999999999999999999999999999663 679999999998753 35788999999999986 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||+||+.++... .....+..+ ...+.++ +|.+..++.++ +.+.+|||||||||+|||||+.+|+||+|
T Consensus 103 tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~-~~~~~LSGGqkQRvaiARal~~~p~ilil 175 (251)
T d1jj7a_ 103 SLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLIL 175 (251)
T ss_dssp BHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCC-SSCSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred chhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHh-ccCccCChhHceEEEEeeccccCCcEEEe
Confidence 999999875321 122222221 1223333 34445566665 45678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+||+.++.++++.|+++.++ |+|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 176 DEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp ESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998754 899999999974 347799999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-47 Score=379.66 Aligned_cols=202 Identities=28% Similarity=0.449 Sum_probs=169.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||+++.+ .+++.++||+|++.+++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 103 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 103 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcccchhhhhhhhheEEEEeeccccCCc-
Confidence 4579999999999999999999999999999999999653 678999999998753 467789999999998875
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|+++|+.++. +...+.++ +++.++..++ .+-.++.++. .+.+|||||||||+|||||+.+|++|
T Consensus 104 ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~il 174 (253)
T d3b60a1 104 TVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPIL 174 (253)
T ss_dssp BHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred chhhhhhhcC----cccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 22234333 3333333332 2334666653 47899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..|++.|+++.+ ++|+|++||++.. .+.||+|++|++|+|++.|+++++++
T Consensus 175 ilDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 175 ILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999875 8999999999753 47899999999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.9e-47 Score=378.50 Aligned_cols=202 Identities=32% Similarity=0.505 Sum_probs=171.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++|+|||++|++||++||+||||||||||+++|+|... +.+|+|.+||.++.. .+|+.++||+|++.+|+
T Consensus 29 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 105 (255)
T d2hyda1 29 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS- 105 (255)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEEcccCCHHHhhheeeeeeccccCCC-
Confidence 34679999999999999999999999999999999999653 679999999998753 46789999999999886
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.||+||+.++. + ..+.+ ++.++++..++ .+..++.+|. ...+||||||||++|||||+.+|++
T Consensus 106 ~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~i 175 (255)
T d2hyda1 106 DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPI 175 (255)
T ss_dssp SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCHHHHHhccC----c-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 59999998752 2 12333 23444555444 3445677763 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++..+++.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 176 lilDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 176 LILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999875 8999999999853 47899999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-45 Score=356.51 Aligned_cols=199 Identities=27% Similarity=0.419 Sum_probs=173.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+..|+||||+|++||++||+||||||||||+|+|+|.. +.+|+|.++|+++.. ..+...+|++|+.......
T Consensus 11 ~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~---~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
T d1l7vc_ 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 87 (231)
T ss_dssp CTTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC---CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSC
T ss_pred cCceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccc
Confidence 356799999999999999999999999999999999953 357999999998743 2345689999998776678
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh-------CCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~-------~p~il 154 (583)
++.+++.+...- +...++++++++.+++.+..++. +++|||||||||+||++|++ +|++|
T Consensus 88 ~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ll 154 (231)
T d1l7vc_ 88 PVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 154 (231)
T ss_dssp BHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred cHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcC-----hhhcCHHHHHHHHHHHHHHhhCcccCCCCCEE
Confidence 999999875321 12345678899999998877654 57899999999999999997 77999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|++++++|+|||++|||++ ++.++|||+++|++|++++.|+++++.
T Consensus 155 llDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 155 LLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp EESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999965 588999999999999999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-44 Score=364.37 Aligned_cols=197 Identities=26% Similarity=0.392 Sum_probs=159.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
..++||+||||+|++||++||+||||||||||+++|+|.+. +++|+|.++| +++||+|++.+++. ||+
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS---------CEEEECSSCCCCSE-EHH
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC---------EEEEEeccccccCc-eee
Confidence 45789999999999999999999999999999999999764 6799999988 38999999999885 999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+.++.. ......++.++. ......+.+..++.++ +...+|||||||||+|||||+++|+||+|||||+
T Consensus 115 eni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred cccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhh-hhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 99987531 222222221111 1122344445566554 3456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||+.++.++++.+.+..++++|+|++||++. ..+.||+|++|++|++++.|+++|+.+
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999865444456899999999963 457899999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-41 Score=325.91 Aligned_cols=185 Identities=25% Similarity=0.421 Sum_probs=154.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
+++||+|+||++++||+++|+||||||||||+|+|+|.+. |++|+|.+||+++.+ .+++++|+||+..+++.+|++|
T Consensus 13 ~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~-~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG-GGGGEEEECSSCCCCTTSBHHH
T ss_pred CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH-hcCcEEEEeecccCCCCcCHHH
Confidence 4689999999999999999999999999999999999764 689999999998854 5678999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
++.+.+.++... .++ +++.+.++.+++.+..+ .+.+||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~------~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 90 YLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp HHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS------BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred HHHHHHHhcCCc-cCH----HHHHHHHHHcCCccccc------ccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCH
Confidence 999887765332 222 34567788888765332 3468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
.++.++++.|+++.+++.++|+++|+. .++||.+.+|++
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 999999999999876544444444441 257999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=1.7e-16 Score=146.81 Aligned_cols=155 Identities=14% Similarity=0.120 Sum_probs=99.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccC--C--CCCCCCCHHHHHHHHHHcCCCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD--D--VLFPHLTVKETLTYAALLRLPNT 98 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~--~--~~~~~lTv~e~l~~~~~~~~~~~ 98 (583)
++|+||||||||||+++|+|.+. +..|.+...+.+....- ++.++..+. . ......+.. ....
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSKFFT----------SKKL 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCC----------CSSE
T ss_pred EEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHH-HhhhhhhhhhhHHHHHHhhhhhh----------hhhh
Confidence 78999999999999999999763 46788888776543211 112221111 0 000000000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007952 99 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178 (583)
Q Consensus 99 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l 178 (583)
. ...+. +.....+|+|+++|.++++++..+|+++++|||... ......+.+.+.++
T Consensus 70 ~-------------~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 70 V-------------GSYGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQI 125 (178)
T ss_dssp E-------------TTEEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHH
T ss_pred h-------------hhhhc---------CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHH
Confidence 0 00000 112236899999999999999999999999998443 33455666677665
Q ss_pred HH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 179 AE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 179 ~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
.+ .+.++|+++|+.. ....+|++..+.+|+++.-++
T Consensus 126 l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 126 MHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred hccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 54 4899999999954 457899999999999987554
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=1.6e-10 Score=115.31 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=65.3
Q ss_pred CcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 130 VRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
...+|+|||+...++..+. .+|+++++|||-++|||..+..+.+.|++.++ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 4679999999988877653 46789999999999999999999999999875 578999999985 5688999866
Q ss_pred --EcCC
Q 007952 206 --LGKG 209 (583)
Q Consensus 206 --L~~G 209 (583)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.83 E-value=2.5e-09 Score=110.78 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=63.8
Q ss_pred CcccChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 130 VRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L----~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
...+|||||.++++|.-+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| ++.+.+|+.+.
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEE
Confidence 367899999998887554 356789999999999999999999999999876566799999997 47889999775
Q ss_pred E
Q 007952 206 L 206 (583)
Q Consensus 206 L 206 (583)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.08 E-value=5.4e-07 Score=85.64 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 140 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 140 Rv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
|+.-....+.+..++++||+.+|=|+.....+. ..++.+.+.+..++++||.. ++.++
T Consensus 104 ~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 104 EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 333333334566799999999999998776664 44555777788999999984 34443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=7.7e-06 Score=77.97 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=35.5
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHC-CcEEEEEecCC
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEA-GKTVVTTIHQP 192 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~-g~tii~~~H~~ 192 (583)
+.+..++++||+.+|=|+.....+.. .++.+.++ +..++++||..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 44567999999999999999888865 46677655 56789999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.58 E-value=8.3e-05 Score=71.78 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=27.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-|+++.+=+.+|+++.|.|++|+|||||+.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555544489999999999999999999887773
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=6.8e-06 Score=74.63 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=28.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-+++.++++.+| +++|+|||||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 357788888877 999999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.17 E-value=0.0001 Score=69.16 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 54 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~ 54 (583)
+|+.++++|+||+|||||+|.|.|... -..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 589999999999999999999998543 2346664
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0021 Score=61.22 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecC
Q 007952 146 EIIINPSLLFLDEPTS-----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQ 191 (583)
Q Consensus 146 ~L~~~p~illLDEPts-----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~ 191 (583)
.-..+|+++++|--++ --|......+++.|++++++ |++||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995542 12556667888888888754 8888888774
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.12 E-value=0.0052 Score=56.34 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
++=+++|+++.|.|++|+|||||.--++
T Consensus 20 ~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 20 HGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3459999999999999999999975444
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.00011 Score=66.49 Aligned_cols=25 Identities=44% Similarity=0.767 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|++++|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999998643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00012 Score=64.46 Aligned_cols=23 Identities=52% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.06 E-value=0.00015 Score=64.31 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.|+++.|.||+||||||+.+.|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.03 E-value=0.0013 Score=61.52 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=79.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+=+++|+++.|.||+|+|||||..-++-... . .| ..+.|+.-+ .+..+.........
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~--~-~~--------------~~~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NK--------------ERAILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEEESS------SCHHHHHHHHHTTS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHH--H-hc--------------cccceeecc------CCHHHHHHHHHHcC
Confidence 3489999999999999999999987774211 0 11 123444322 34555444433221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCCCC---CCCHHHHH
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTS---GLDSTTAL 169 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEPts---gLD~~~~~ 169 (583)
.... +.. ..+.....+. ........ ..+...... -.+|++++.|--+. +.+.....
T Consensus 78 ----~~~~-------~~~-~~~~~~~~~~-----~~~~~~~~--~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~ 138 (242)
T d1tf7a2 78 ----MDFE-------EME-RQNLLKIVCA-----YPESAGLE--DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFR 138 (242)
T ss_dssp ----CCHH-------HHH-HTTSEEECCC-----CGGGSCHH--HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHH
T ss_pred ----CChH-------HHh-hcCceEEEEe-----ecchhhHH--HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHH
Confidence 1111 111 1121111111 11112221 222222222 24799999997544 44566556
Q ss_pred HHHHHHHHHHH-CCcEEEEEecCC---------ChHHHhhcCeEEEEc
Q 007952 170 RIVQMLQDIAE-AGKTVVTTIHQP---------SSRLFHKFDKLILLG 207 (583)
Q Consensus 170 ~i~~~l~~l~~-~g~tii~~~H~~---------~~~i~~~~D~v~~L~ 207 (583)
..+..|.++++ .+.+++++.|.. ...+...+|-++.|.
T Consensus 139 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 139 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 66666656554 588988888742 112456789988884
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00022 Score=62.93 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.++.|+||+||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.00012 Score=69.06 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 54 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~ 54 (583)
+|+.++++|+||+|||||+|.|.|... -..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 578899999999999999999998543 2346664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00035 Score=64.69 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|.++.|+||||||||||.+.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.70 E-value=0.00039 Score=61.37 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00013 Score=64.71 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.66 E-value=0.00039 Score=61.57 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.00043 Score=61.24 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++++|+|++|||||||++.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999888654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00044 Score=70.09 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=23.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
++.+.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455555699999999999999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.60 E-value=0.00053 Score=60.42 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|-.++|.||+||||||+.+.|+-++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.53 E-value=0.00063 Score=58.72 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=24.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 58 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~ 58 (583)
+++.|.||+|||||||.+.|.... .|...++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC-----CCCEEechH
Confidence 578899999999999999886421 255555543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.002 Score=61.14 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+.||+|+|||+|.++|++.
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 789999999999999999974
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.43 E-value=0.00063 Score=61.67 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||+|.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 3999999999999999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.41 E-value=0.00083 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++.|.|++||||||+.+.|+.++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.40 E-value=0.00082 Score=59.54 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++++|.|++||||||+.+.|+-++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998644
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.39 E-value=0.00083 Score=58.69 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 58 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~ 58 (583)
.++.|.||+||||||+.+.|+..+ ++.+.++|.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~-----~~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEehH
Confidence 478999999999999999999743 244555553
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.34 E-value=0.0008 Score=58.98 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0012 Score=56.98 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+.|+||+||||||+-+.|+-++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.16 E-value=0.001 Score=59.29 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.00073 Score=60.63 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.15 E-value=0.0011 Score=59.42 Aligned_cols=22 Identities=59% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++||-||+|||||||.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.13 E-value=0.0012 Score=61.39 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0014 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0014 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999843
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0009 Score=60.07 Aligned_cols=26 Identities=42% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.|.++.|.|++||||||+-+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0014 Score=59.25 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+||||||||||++.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.03 E-value=0.15 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0016 Score=57.66 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0019 Score=58.15 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999888753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.02 E-value=0.0015 Score=58.94 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0018 Score=58.86 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.0017 Score=57.97 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+||+|++|+|||||+|.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.002 Score=57.33 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.89 E-value=0.0013 Score=58.19 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999884
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.88 E-value=0.0013 Score=58.66 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+||+|++|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.0018 Score=58.63 Aligned_cols=20 Identities=55% Similarity=0.821 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+||||||||||.+.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999975
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0016 Score=55.98 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999984
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.83 E-value=0.0017 Score=55.91 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0023 Score=55.61 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0023 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+-.++.|+||+||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.78 E-value=0.0016 Score=58.88 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.+.++.|+||+||||||+.+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999963
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.71 E-value=0.002 Score=55.79 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.69 E-value=0.00063 Score=63.00 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
++|.++-+.|.||||||||-+.|.-++......-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999999853311001125677776653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.69 E-value=0.0025 Score=56.01 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999744
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.64 E-value=0.0031 Score=56.69 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++|--++|+||+||||||..+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3577788999999999999999995
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0031 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++||-|++||||||+-+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.53 E-value=0.0026 Score=57.15 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.50 E-value=0.0029 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+.|+|++||||||+-+.|+-++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0016 Score=57.77 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0034 Score=56.44 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.|+||+||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.47 E-value=0.0032 Score=55.81 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.47 E-value=0.0033 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.46 E-value=0.0033 Score=54.92 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.0037 Score=54.92 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.++|++||||||+-+.|+.++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999999754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.0044 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998863
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.21 E-value=0.0039 Score=59.28 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.20 E-value=0.0041 Score=55.44 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999973
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.14 E-value=0.0042 Score=58.54 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
...+.+.||+|||||||.+.|++.+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999854
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.13 E-value=0.005 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.||+||||||.-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999743
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.12 E-value=0.0052 Score=55.50 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999953
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.12 E-value=0.0052 Score=54.71 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999964
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.044 Score=55.20 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCe
Q 007952 142 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 202 (583)
Q Consensus 142 ~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 202 (583)
++..+|=++|++++.+|.. |+.++...+ +.+..|..|+.|.|-.+. ....+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCch--Hhhhhh
Confidence 4555667899999999998 566555544 456679999999997543 444555
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.09 E-value=0.0046 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.09 E-value=0.0014 Score=57.02 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.0054 Score=54.52 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.|+||+||||||+-+.|+..
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999963
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.0044 Score=56.32 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0063 Score=55.46 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.||+||||||+-+.|+.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0065 Score=55.94 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3489999999999999999999987764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0055 Score=54.32 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.76 E-value=0.006 Score=53.23 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.0072 Score=53.74 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999963
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.74 E-value=0.0057 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998744
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.73 E-value=0.0072 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999964
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.66 E-value=0.007 Score=54.22 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0071 Score=59.61 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
...-.+||.||+|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 3466899999999999999999985
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.0056 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.47 E-value=0.0074 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0093 Score=54.71 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|.+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999988644
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.0084 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.38 E-value=0.0081 Score=60.88 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.37 E-value=0.0084 Score=52.59 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.01 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998644
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.30 E-value=0.012 Score=54.50 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999977554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.30 E-value=0.02 Score=50.99 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=26.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+..|+..-..+ .|.=+.|.|+||+|||||.-.+..
T Consensus 2 ~~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 2 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp CEEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44566555544 588899999999999999877764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.27 E-value=0.012 Score=53.94 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999888874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.20 E-value=0.0086 Score=58.89 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.|.-+.|.||.||||||||++|.+..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhc
Confidence 334558999999999999999999854
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=0.012 Score=54.79 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+.|.||+|+||||+.++|+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999974
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.0087 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988863
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.15 E-value=0.012 Score=57.90 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..-.++|.||+|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 456799999999999999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.13 E-value=0.011 Score=54.40 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|.||+|+|||||.++|+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999999963
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.12 E-value=0.011 Score=55.09 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+..+.|.||+|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 567899999999999999998875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.10 E-value=0.014 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999777775
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.011 Score=52.22 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.02 E-value=0.011 Score=54.73 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 599999999999999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.014 Score=53.87 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999887763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.013 Score=50.91 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.014 Score=51.85 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.015 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|.+|+|||||++-+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.018 Score=50.53 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.78 E-value=0.015 Score=52.85 Aligned_cols=21 Identities=48% Similarity=0.771 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++||.|+.||||||..+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999873
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.77 E-value=0.011 Score=51.38 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.016 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.73 E-value=0.015 Score=53.80 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 678999999999999999964
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.016 Score=53.26 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|=|+-||||||+.+.|+-++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 69999999999999999999999765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.012 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.014 Score=51.33 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.016 Score=53.24 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+-||+|+|||||.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 678999999999999999964
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.014 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.016 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.014 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.46 E-value=0.015 Score=53.82 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+.||+|+|||||.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999974
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.45 E-value=0.037 Score=49.21 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=27.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..++.....+ .|.=+.|.|+||+|||||.-.+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3466655666 688999999999999999987774
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.017 Score=56.27 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=31.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~ 79 (583)
++||-|++||||||+-+.|...+.... -..++..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~---------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP---------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST---------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc---------------CCCceEEEeeeeeECC
Confidence 899999999999999999886442100 0134778888887765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.45 E-value=0.016 Score=51.39 Aligned_cols=20 Identities=40% Similarity=0.709 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.44 E-value=0.011 Score=52.38 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999998865
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.42 E-value=0.017 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.-+.+.||+|+|||+|.|+|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456689999999999999999743
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.017 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.021 Score=50.08 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998743
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.28 E-value=0.025 Score=51.80 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+++++||+|+||||.+-=|+.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999998888754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.25 E-value=0.024 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+.|.||+|+||||+++.|+..+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.22 E-value=0.011 Score=56.91 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++||-|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 8999999999999999998863
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=0.022 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.016 Score=50.14 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998885
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.019 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|..|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.07 E-value=0.023 Score=49.37 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999885
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.024 Score=51.54 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.02 E-value=0.022 Score=52.36 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=20.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++-.+++++||+|+||||.+-=|+-+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34558899999999999987777753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.00 E-value=0.018 Score=51.69 Aligned_cols=20 Identities=50% Similarity=0.679 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.94 E-value=0.015 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999986
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.92 E-value=0.031 Score=48.79 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=24.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.++++-|+=|||||||.|.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhh
Confidence 468999999999999999999999853
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.92 E-value=0.024 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+.+.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4778999999999999999973
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.028 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..-+.+.||+|+|||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 344779999999999999999974
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.84 E-value=0.027 Score=50.62 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|-|+-||||||+++.|..++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.02 Score=50.37 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|.+|+|||||++.+.+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.032 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.023 Score=49.38 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.017 Score=50.75 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997776
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.021 Score=50.02 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.026 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.026 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.+|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.029 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++++||+|+||||.+-=|+-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999988777753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.026 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988763
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.018 Score=50.47 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.031 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+-||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678899999999999999863
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.029 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.034 Score=48.41 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.+|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999999885
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.19 E-value=0.028 Score=53.29 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++..-+.|.||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344457899999999999999999843
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.17 E-value=0.034 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.-.+++++||+|+||||.+-=|+-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999997777753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.031 Score=48.69 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.032 Score=48.68 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.97 E-value=0.04 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.586 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.91 E-value=0.038 Score=53.01 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+.+-.||-.+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4677899999999999999999999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.90 E-value=0.041 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999988864
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.038 Score=49.09 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007952 23 LALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~ 41 (583)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.88 E-value=0.041 Score=47.96 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.86 E-value=0.038 Score=50.45 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=27.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
.+++++||.- .+....+..+.+.|.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 4699999964 6777777777777765432 344556666543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.036 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.78 E-value=0.036 Score=53.76 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+||+|.+.+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.73 E-value=0.029 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 34556999999999999999643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.035 Score=51.41 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
+.+++++||.-. |....+..+.+.+.+-. ....+|++++++..
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccc
Confidence 567999999965 77777777666665432 24567888888753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.68 E-value=0.042 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+.+.||+|+|||+|.++++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 778899999999999999974
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.61 E-value=0.056 Score=51.20 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|.++-|.||+|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6789999999999999999999877775
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.49 E-value=0.052 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.05 Score=47.15 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.042 Score=52.53 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=26.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|+.++-.| -+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554433 489999999999999999999853
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.24 E-value=0.048 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-+.|+|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.18 E-value=0.083 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=25.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+-++.... .-.|.=+.|.|+||+|||||.-.+..
T Consensus 4 t~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 4 TSLHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34555444 44588999999999999999876664
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.12 E-value=0.057 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999954
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.05 E-value=0.039 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999973
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.86 E-value=0.052 Score=47.86 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986664
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.046 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.08 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4447889999999999999999963
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.67 E-value=0.066 Score=54.58 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=28.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 75 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~ 75 (583)
=+.++||+|+|||-|.+.|++.+.- | -+..+.... ...|||-.|-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~f-----TeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATKF-----TEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGGG-----C----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-C---EEEeeccee-----eecceeecch
Confidence 3788999999999999999986532 2 233333332 2378888763
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.62 E-value=0.071 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+||+|-+.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999973
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.31 E-value=0.092 Score=47.52 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
+||+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.092 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++++|=|+-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999999644
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.92 E-value=0.091 Score=46.23 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
+.++|.+|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.89 E-value=0.1 Score=45.74 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68999999999999998864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.84 E-value=0.12 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.68 E-value=0.093 Score=49.69 Aligned_cols=20 Identities=55% Similarity=0.738 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007952 22 VLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~ 41 (583)
-+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999994
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.59 E-value=0.052 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-+.|.||.|+|||||.|.+++.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 47889999999999999999866
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.57 E-value=0.12 Score=48.97 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=++.|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5789999999999999999999755553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.22 E-value=0.14 Score=48.51 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=++.|.++-|-||+|||||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 5789999999999999999999988886
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.21 E-value=0.099 Score=51.76 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=29.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-EECCcc
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHP 59 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-~~~g~~ 59 (583)
++++..+.+.||+|+||||+.++|++.+ .|.+ .+|+-+
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~-----~~~~i~in~s~ 189 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL 189 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEECcc
Confidence 3677899999999999999999999843 3444 355543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.095 Score=48.07 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.|-|.=||||||||+-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 688999999999999999885
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.19 E-value=0.13 Score=46.31 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|.=-+||+|.-.+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 44348999999999999999999854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.46 E-value=0.12 Score=49.00 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007952 22 VLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~ 41 (583)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999994
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.46 E-value=0.17 Score=47.99 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+.+-+||..+|+|++|+|||||+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999877763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.38 E-value=0.14 Score=46.53 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 147 IIINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 147 L~~~p~illLDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
.+.+.+++++|+--.= =+...+..+..++.++.+.|+.+|+++..+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 3568999999987442 35777888999999998889999999987654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.37 E-value=0.17 Score=49.08 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...++| ++.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 445555 6666899999999999999984
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.81 E-value=0.16 Score=50.76 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007952 22 VLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~ 41 (583)
-+.|+|++|||||++++.+.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=0.21 Score=47.15 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-..|+||+|+|||+++.-++.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=0.25 Score=47.35 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=19.4
Q ss_pred eEEEE-eCCeEEEEECCCCCcHHHH
Q 007952 13 ITGSV-NPGEVLALMGPSGSGKTTL 36 (583)
Q Consensus 13 vs~~i-~~Ge~~~i~G~nGaGKSTL 36 (583)
.|-.+ +.|++....|.||+|||||
T Consensus 6 csan~~~~~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 6 CSANVGEKGDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp EEEEECTTSCEEEEECSTTSSHHHH
T ss_pred cccccCCCCCEEEEEccCCCCcccc
Confidence 34444 4689999999999999996
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.24 Score=44.43 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-..|+||+|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999999754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.12 E-value=0.27 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 37889999999999999998744
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.28 Score=45.05 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
.+++++||.-. |+..++..+.+.+.+-. .+..+|++++++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 45999999954 77777776666664321 35678888887654
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.11 E-value=0.22 Score=47.92 Aligned_cols=23 Identities=48% Similarity=0.794 Sum_probs=18.5
Q ss_pred EEEEe-CCeEEEEECCCCCcHHHH
Q 007952 14 TGSVN-PGEVLALMGPSGSGKTTL 36 (583)
Q Consensus 14 s~~i~-~Ge~~~i~G~nGaGKSTL 36 (583)
|-.+. .|++....|.||+|||||
T Consensus 7 san~~~~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 7 SANVGKEGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp EEEECTTCCEEEEEECTTSCHHHH
T ss_pred ccccCCCCCEEEEEccCCCCcccc
Confidence 33343 488999999999999996
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.92 E-value=0.32 Score=46.94 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 344467889999999999999999644
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.93 E-value=0.29 Score=45.99 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.3
Q ss_pred EEEEECCCCCcHHHHH
Q 007952 22 VLALMGPSGSGKTTLL 37 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl 37 (583)
-+.|.|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4678999999999754
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.31 E-value=0.32 Score=46.80 Aligned_cols=19 Identities=53% Similarity=0.810 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 007952 19 PGEVLALMGPSGSGKTTLL 37 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl 37 (583)
.|++....|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6789999999999999984
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.04 E-value=0.44 Score=44.70 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+-.++|+|-+-+|||||+|.|.|+.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEEecCccchhhhhhhhhccc
Confidence 34458999999999999999999954
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.73 E-value=0.62 Score=42.38 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.69 E-value=0.29 Score=46.53 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=18.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL 37 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl 37 (583)
++.++++. .| -+.|.|+.||||||.|
T Consensus 16 Q~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 16 QQEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 44566653 34 3678899999999764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.47 E-value=0.41 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007952 23 LALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g 42 (583)
+||+|.-++|||||++.|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999976
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.29 E-value=0.54 Score=39.52 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 191 (583)
++++++.||--= ++ ..+.+.++.+.+.|++|++.--+
T Consensus 79 ~~dvI~IDE~QF-f~----d~i~~~~~~~~~~g~~Viv~GLd 115 (139)
T d2b8ta1 79 ETKVIGIDEVQF-FD----DRICEVANILAENGFVVIISGLD 115 (139)
T ss_dssp TCCEEEECSGGG-SC----THHHHHHHHHHHTTCEEEEECCS
T ss_pred CcCEEEechhhh-cc----hhHHHHHHHHHhcCceEEEEEec
Confidence 688999999732 11 23556666677789999999765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.06 E-value=0.43 Score=46.93 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=21.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++. +..+||+|+|||-|-|.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 34554 5667999999999999999643
|