Citrus Sinensis ID: 007973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
Protein Sequence
MEEDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQVVRPPKFRRPPGRPEKKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF
Secondary Structure (PSIPRED)
ccccccEEEccEEccHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEEEccccccEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHccccccccEEEEEcccccccEEEEEEEccccccccccEEEEEEccccEEEcccccHHHccEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccEEEEccccEEEEEEccEEEEEEcccEEEEcccccccccccccHHHHHHHHcccccccccHHccHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHEEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEEcccEEEEEccccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meedhnfvvgqefpdVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTegcpwriravklpnaptftirslegthtcgknaqighhqaSVDWIVSFIEERLRdninykpkdILQDIHKQYGIIIPYKQAWRAKERGLAAIygsseegycllpsyceqikrtnpgsiaevfttgadnrFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLsatsfdadgglfpiafgvidvendESWMWFLSEFHKALEIhaesmpqltfisdGQKGIADAvrrkfpnsslAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIqqyppshwalvhfegtryghlssNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIvnigthccscrdwqlygipcSHAVAALISCRKDVYAFAEKCFTVASYRQTYAeeihpipgriewrktgegiddeiqvvrppkfrrppgrpekkricledlnrekhtvhcsrcnqtghyktTCKAEIMKSIEQF
Flexible Loop (DISEMBL)
meedhnfvvgqefpdVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTegcpwriravklpnapTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYaeeihpipgriewrktgegiddeiqvvrppkfrrppgrpekkricledlnrekhtvhcsrcnqtghykttcKAEIMKSIEQF
Low Complexity Region (SEG)
MEEDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQVVrppkfrrppgrpekkrICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF
Disordered region (IsUnstruct)
******FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQV*****************ICLEDLNREKHTVHCSRCNQTGHYKTTCKA*********
Disordered Region (DISOPRED)
****HNF*VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQV**********************************CNQTGHYKTTC***********
Disordered Region (DISEMBL)
MEEDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQVVRPPKFRRPPGRPEKKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF
Disordered Region (DISPRO)
****HNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQVVRPPKFR*PP**PEKKRIC**DLNREKHTVHCSRCNQT***KTTCKAE********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQVVRPPKFRRPPGRPEKKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
225429092	583	PREDICTED: uncharacterized protein LOC10	0.994	0.994	0.884	0.0
224105815	589	predicted protein [Populus trichocarpa]	0.996	0.986	0.857	0.0
356521263	582	PREDICTED: uncharacterized protein LOC10	0.994	0.996	0.826	0.0
356527977	582	PREDICTED: uncharacterized protein LOC10	0.993	0.994	0.819	0.0
449459624	582	PREDICTED: uncharacterized protein LOC10	0.994	0.996	0.800	0.0
449520056	582	PREDICTED: uncharacterized LOC101204073	0.994	0.996	0.798	0.0
225452988	749	PREDICTED: uncharacterized protein LOC10	0.977	0.761	0.582	0.0
224125676	581	predicted protein [Populus trichocarpa]	0.977	0.981	0.580	0.0
356576716	750	PREDICTED: uncharacterized protein LOC10	0.972	0.756	0.580	0.0
224115958	572	predicted protein [Populus trichocarpa]	0.970	0.989	0.576	0.0

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/581 (88%), Positives = 545/581 (93%), Gaps = 1/581 (0%)

Query: 4   DHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLP 63
           D+NFVVGQEF DVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKC TEGCPWRIRAVKLP
Sbjct: 3   DYNFVVGQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLP 62

Query: 64  NAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYG 123
           NAPTFTIRSLEGTHTCGKNAQ GHHQASVDWIVSFIEERLRDNINYKPKDIL DIHKQYG
Sbjct: 63  NAPTFTIRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYG 122

Query: 124 IIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRL 183
           I IPYKQAWRAKERGLAAIYGSSEEGYCLLP+YCE+IKR NPGS+AEVFT+GADNRFQRL
Sbjct: 123 ITIPYKQAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGADNRFQRL 182

Query: 184 FVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDE 243
           FVSF ASIYGFLNGCLPIV +GGIQLKSKYLGTLLSATSFDADGGLFP+AFGV+D ENDE
Sbjct: 183 FVSFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDE 242

Query: 244 SWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKE 303
           SWMWFLSE  KALE++ E++PQLTF+SDGQKGI DAV+RKFP SS AFCMRHLSESIGKE
Sbjct: 243 SWMWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKE 302

Query: 304 FKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGH 363
           FKNSRL HLLWK AYATTT+AFKE+M EIE+VSSEAAKWIQQ+P S WALV+FEGTRYGH
Sbjct: 303 FKNSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYFEGTRYGH 362

Query: 364 LSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEA 423
           LSSNIEEFN+WILEARELPIIQVIEQIH KLMAEFE RRLKS+SWFSVLAPSA+KRM+EA
Sbjct: 363 LSSNIEEFNKWILEARELPIIQVIEQIHSKLMAEFEERRLKSNSWFSVLAPSADKRMMEA 422

Query: 424 INHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKD 483
           I  AS YQVLRSDEVEFEVLSAERSDIVNIGT CCSCRDWQLYGIPCSHAVAAL+SCRKD
Sbjct: 423 IGRASTYQVLRSDEVEFEVLSAERSDIVNIGTQCCSCRDWQLYGIPCSHAVAALLSCRKD 482

Query: 484 VYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEG-IDDEIQVVRPPKFRRPPGRPEK 542
           VYAF EKCFTVASYR  Y+EEI PIP +IEWR+T E  +DD+  VVRPPKFRRPPGRPEK
Sbjct: 483 VYAFTEKCFTVASYRAAYSEEIRPIPCKIEWRRTVEAPVDDDTPVVRPPKFRRPPGRPEK 542

Query: 543 KRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           KRIC+EDLNREKHTVHCSRCNQTGHYKTTCKA+IMKSIEQF
Sbjct: 543 KRICVEDLNREKHTVHCSRCNQTGHYKTTCKADIMKSIEQF 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105815|ref|XP_002313941.1| predicted protein [Populus trichocarpa] gi|222850349|gb|EEE87896.1| predicted protein [Populus trichocarpa]

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/588 (85%), Positives = 539/588 (91%), Gaps = 7/588 (1%)

Query: 3   EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
           E+H FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKC +EGCPWRIRAVKL
Sbjct: 2   ENHTFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKL 61

Query: 63  PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
           PN PTFT+RSLEGTHTCG+NAQ GHHQASVDWIVSFIEERLR+N NYKPKDIL DIH+QY
Sbjct: 62  PNVPTFTVRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNTNYKPKDILHDIHQQY 121

Query: 123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQR 182
           GI IPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGS+AEVFTTGADNRF R
Sbjct: 122 GITIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSVAEVFTTGADNRFHR 181

Query: 183 LFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVEND 242
           LF+SF  SI GFLNGCLPIV +GGIQLKSKYLGTLLSATSFDADGGLFP+AFGV+DVEND
Sbjct: 182 LFISFFGSINGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDVEND 241

Query: 243 ESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGK 302
           ESWMWFLSE  KALE++ E+MP+LTF+ DGQKGI DAVRRKFP+SS AFC+RHLSESIGK
Sbjct: 242 ESWMWFLSELQKALEMNTENMPRLTFLCDGQKGIVDAVRRKFPSSSHAFCLRHLSESIGK 301

Query: 303 EFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYG 362
           EFKNSRL HLLWK AYATTT+ FKE+M EI +VSS AAKW+QQ+PPS WALV+FEGTRYG
Sbjct: 302 EFKNSRLVHLLWKAAYATTTIHFKEKMLEISEVSSAAAKWLQQFPPSRWALVYFEGTRYG 361

Query: 363 HLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIE 422
           HLSSNI+EFNRWILEARELPIIQVIE+IH KLMAEF+ R++KS+SWFSVLAPSAEKRMIE
Sbjct: 362 HLSSNIDEFNRWILEARELPIIQVIERIHSKLMAEFQDRQMKSNSWFSVLAPSAEKRMIE 421

Query: 423 AINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRK 482
           AINHAS YQVLRSDEVEFEVLSA+RSDIVNIGTH CSCR WQLYGIPCSHAVAAL+SCRK
Sbjct: 422 AINHASAYQVLRSDEVEFEVLSADRSDIVNIGTHSCSCRGWQLYGIPCSHAVAALVSCRK 481

Query: 483 DVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEG------IDDEIQVVRPPKFRRP 536
           DVYAF EKCFTVA YR+ YAE IHPIP RIEWRK  E        DD+ QVVRPPKFRRP
Sbjct: 482 DVYAFTEKCFTVAGYREAYAETIHPIPERIEWRKMSEAPMDDDDDDDDAQVVRPPKFRRP 541

Query: 537 PGRPEKKRICLE-DLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           PGRPEKKRIC+E DLNREKHTVHCSRCNQTGHYKTTCKAE M SIEQF
Sbjct: 542 PGRPEKKRICVEDDLNREKHTVHCSRCNQTGHYKTTCKAETMNSIEQF 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521263|ref|XP_003529276.1| PREDICTED: uncharacterized protein LOC100800865 [Glycine max]

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/582 (82%), Positives = 528/582 (90%), Gaps = 2/582 (0%)

Query: 3   EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
           ED+NF VGQEFPDVKAFRNAIKEAAIAQHFELR IKSDLIRYFAKC ++GCPWRIRAVKL
Sbjct: 2   EDYNFSVGQEFPDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKL 61

Query: 63  PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
           PNAPTFTIRS++GTHTCG+NA  GHHQASVDWIVSFIEERLRDNINYKPKDIL DIHKQY
Sbjct: 62  PNAPTFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQY 121

Query: 123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQR 182
           GI IPYKQAWRAKERGLAAIYGSSEEGY LLPSYCEQIK+TNPGS+AEVFTTGADNRFQR
Sbjct: 122 GITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFTTGADNRFQR 181

Query: 183 LFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVEND 242
           LFVSF ASI GF+NGCLPIV +GGIQLKSKYL TLLSATSFDADGGLFP+AFGV+DVEND
Sbjct: 182 LFVSFYASITGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVEND 241

Query: 243 ESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGK 302
           +SW WFLSE HK LE++ E MP+  F+SDG   I DAVRRKFP+SS AFCMRHL+ESIGK
Sbjct: 242 DSWTWFLSELHKVLEVNTECMPEFIFLSDGLNSITDAVRRKFPSSSHAFCMRHLTESIGK 301

Query: 303 EFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYG 362
           EFKNSRL HLLWK +Y+TTT+AFKE+MGEIE+VS EAAKW+QQ+ PS WALVHF+GTR+G
Sbjct: 302 EFKNSRLVHLLWKASYSTTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHFKGTRFG 361

Query: 363 HLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIE 422
           HLSSNIEEFN+WIL+ARELPIIQVIE+IH KL  EF+ RRLKSSSW SVLAPSAEK M E
Sbjct: 362 HLSSNIEEFNKWILDARELPIIQVIERIHSKLKTEFDDRRLKSSSWCSVLAPSAEKLMTE 421

Query: 423 AINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRK 482
           AIN AS +QVLRS+EVEFEVLSA+RSDIVNIG+H CSCRDWQL GIPCSHA AALISCRK
Sbjct: 422 AINRASTHQVLRSNEVEFEVLSADRSDIVNIGSHSCSCRDWQLNGIPCSHAAAALISCRK 481

Query: 483 DVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEG-IDDEIQVVRPPKFRRPPGRPE 541
           DVYAF++KCFT AS+R TYAE IHPIPG++EW KTG   +DD I VVRPPK RRPPGRPE
Sbjct: 482 DVYAFSQKCFTAASFRDTYAETIHPIPGKLEWSKTGNSSMDDNILVVRPPKLRRPPGRPE 541

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           K R+C++DLNREKHTVHCSRCNQTGHYK TCKAE++ SIEQF
Sbjct: 542 K-RMCVDDLNREKHTVHCSRCNQTGHYKRTCKAEMINSIEQF 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527977|ref|XP_003532582.1| PREDICTED: uncharacterized protein LOC100775909 [Glycine max]

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/583 (81%), Positives = 525/583 (90%), Gaps = 4/583 (0%)

Query: 3   EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
           ED+NF VGQ+F DVKAFRNAIKEAAIAQHFELR IKSDLIRYFAKC ++GCPWRIRAVKL
Sbjct: 2   EDYNFFVGQKFHDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKL 61

Query: 63  PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
           PNAPTFTIRS++GTHTCG+NA  GHHQASVDWIVSFIEERLRDNINYKPKDIL DIHKQY
Sbjct: 62  PNAPTFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQY 121

Query: 123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQR 182
           GI IPYKQAWRAKERGLAAIYGSSEEGY LLPSYCEQIK+TNPGS+AEVFT GADNRFQR
Sbjct: 122 GITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFT-GADNRFQR 180

Query: 183 LFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVEND 242
            FVSF ASI GF+NGCLPIV +GGIQLKSKYL TLLSATSFDADGGLFP+AFGV+DVEND
Sbjct: 181 FFVSFYASINGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVEND 240

Query: 243 ESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGK 302
           +SW WFLSE HK LE++ E MP+  F+SDGQKGI DAVRRKFP+SS A CMRHL+ESIGK
Sbjct: 241 DSWTWFLSELHKVLEVNTECMPKFIFLSDGQKGITDAVRRKFPSSSHALCMRHLTESIGK 300

Query: 303 EFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYG 362
           EFKNSRL HLLWK ++ATTT+AFKE+MGEIE+VS EAAKW+QQ+ PS WALVHF+GTR+G
Sbjct: 301 EFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHFKGTRFG 360

Query: 363 HLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIE 422
           HLSSNIEEFN+WIL+ RELPIIQVIE+IH KL  EF+ RRLKSSSW SVLAPSAEK M E
Sbjct: 361 HLSSNIEEFNKWILDTRELPIIQVIERIHSKLKTEFDDRRLKSSSWCSVLAPSAEKLMTE 420

Query: 423 AINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRK 482
           AI+HAS YQVLRSDEVEFEVLSA+RSDIVNIG+H CSCRDWQL GIPCSHA AALISCRK
Sbjct: 421 AIDHASTYQVLRSDEVEFEVLSADRSDIVNIGSHSCSCRDWQLNGIPCSHATAALISCRK 480

Query: 483 DVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGE--GIDDEIQVVRPPKFRRPPGRP 540
           DVYAF +KCFT ASYR TYAE IH IPG++EW KT +   +DD I VVRPPK RRPPGRP
Sbjct: 481 DVYAFTQKCFTAASYRNTYAEAIHHIPGKLEWSKTDDKSSMDDNILVVRPPKLRRPPGRP 540

Query: 541 EKKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           EK+ +C++DLNREKHTVHCSRCNQTGHYK TCKAE++ SIEQF
Sbjct: 541 EKQ-MCVDDLNREKHTVHCSRCNQTGHYKRTCKAEMINSIEQF 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459624|ref|XP_004147546.1| PREDICTED: uncharacterized protein LOC101204073 [Cucumis sativus]

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/582 (80%), Positives = 526/582 (90%), Gaps = 2/582 (0%)

Query: 3   EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
           EDH FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKC  EGCPWRIRAVKL
Sbjct: 2   EDHTFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKL 61

Query: 63  PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
           PN+P FTIRSL+GTHTCG+NAQ GHHQAS+DWIVSFIEERLR+NINYKPKDIL DIHKQY
Sbjct: 62  PNSPIFTIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQY 121

Query: 123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQR 182
           GI IPYKQAWRAKERGLA I+GSSEEGY LLPSYCEQIK+ NPGS+AEVFTTG+DN FQR
Sbjct: 122 GITIPYKQAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANPGSVAEVFTTGSDNHFQR 181

Query: 183 LFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVEND 242
           LFVSF ASIYGFLNGC P++ +GGI+LKSKYLGTLLSATS+DADGG+FP+AFGV+D EN+
Sbjct: 182 LFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAENE 241

Query: 243 ESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGK 302
           ESW+WFLSE H AL+++A +   LTF+SDGQKGI DA+RRKFPNSS A CMR+LSE+IGK
Sbjct: 242 ESWLWFLSELHNALKMNAWNKFHLTFLSDGQKGILDALRRKFPNSSHALCMRYLSENIGK 301

Query: 303 EFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYG 362
           EFKNSRL  L+WK AYA TT+AFKERM +IE++S EAAKWIQQ+PP HWALV+FEGTRYG
Sbjct: 302 EFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFPP-HWALVYFEGTRYG 360

Query: 363 HLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIE 422
           HLSSN+EEF +WIL+ARELPIIQVIE+IH KLMAEFE RR +S+SWFS L PSAEKR++E
Sbjct: 361 HLSSNLEEFTKWILDARELPIIQVIERIHSKLMAEFEERRARSTSWFSFLTPSAEKRIVE 420

Query: 423 AINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRK 482
           AI  AS YQVL+SDEVEFEVLSA+RS IVNIG  CC CRDWQLYGIPCSHAVAA+ SCRK
Sbjct: 421 AIKLASSYQVLQSDEVEFEVLSADRSYIVNIGKRCCLCRDWQLYGIPCSHAVAAIASCRK 480

Query: 483 DVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEG-IDDEIQVVRPPKFRRPPGRPE 541
           DV+AF EKCFTV+ YR+ Y + +HPIP ++EW++  +  IDD+ Q+VRPPKFRRPPGRPE
Sbjct: 481 DVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWKRLDDTPIDDDTQIVRPPKFRRPPGRPE 540

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           KKRIC+EDLNREKHTVHCSRCNQTGHYKTTCKA++MKSIEQF
Sbjct: 541 KKRICVEDLNREKHTVHCSRCNQTGHYKTTCKAQLMKSIEQF 582

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520056|ref|XP_004167050.1| PREDICTED: uncharacterized LOC101204073 [Cucumis sativus]

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/582 (79%), Positives = 525/582 (90%), Gaps = 2/582 (0%)

Query: 3   EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
           EDH FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKC  EGCPWRIRAVKL
Sbjct: 2   EDHTFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKL 61

Query: 63  PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
           PN+P FTIRSL+GTHTCG+NAQ GHHQAS+DWIVSFIEERLR+NINYKPKDIL DIHKQY
Sbjct: 62  PNSPIFTIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQY 121

Query: 123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQR 182
           GI IPYKQAWRAKERGLA I+GSSEEGY LLPSYCEQIK+ NPGS+AEVFTTG+DN FQR
Sbjct: 122 GITIPYKQAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANPGSVAEVFTTGSDNHFQR 181

Query: 183 LFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVEND 242
           LFVSF ASIYGFLNGC P++ +GGI+LKSKYLGTLLSATS+DADGG+FP+AFGV+D EN+
Sbjct: 182 LFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAENE 241

Query: 243 ESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGK 302
           ESW+WFLSE H AL+++A +   LTF+SDGQ GI DA+RRKFPNSS A CMR+LSE+IGK
Sbjct: 242 ESWLWFLSELHNALKMNAWNKFHLTFLSDGQNGILDALRRKFPNSSHALCMRYLSENIGK 301

Query: 303 EFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYG 362
           EFKNSRL  L+WK AYA TT+AFKERM +IE++S EAAKWIQQ+PP HWALV+FEGTRYG
Sbjct: 302 EFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFPP-HWALVYFEGTRYG 360

Query: 363 HLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIE 422
           HLSSN+EEF +WIL+ARELPIIQVIE+IH KLMAEFE RR +S+SWFS L PSAEKR++E
Sbjct: 361 HLSSNLEEFTKWILDARELPIIQVIERIHSKLMAEFEERRARSTSWFSFLTPSAEKRIVE 420

Query: 423 AINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRK 482
           AI  AS YQVL+SDEVEFEVLSA+RS IVNIG  CC CRDWQLYGIPCSHAVAA+ SCRK
Sbjct: 421 AIKLASSYQVLQSDEVEFEVLSADRSYIVNIGKRCCLCRDWQLYGIPCSHAVAAIASCRK 480

Query: 483 DVYAFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEG-IDDEIQVVRPPKFRRPPGRPE 541
           DV+AF EKCFTV+ YR+ Y + +HPIP ++EW++  +  IDD+ Q+VRPPKFRRPPGRPE
Sbjct: 481 DVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWKRLDDTPIDDDTQIVRPPKFRRPPGRPE 540

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEIMKSIEQF 583
           KKRIC+EDLNREKHTVHCSRCNQTGHYKTTCKA++MKSIEQF
Sbjct: 541 KKRICVEDLNREKHTVHCSRCNQTGHYKTTCKAQLMKSIEQF 582

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452988|ref|XP_002262784.1| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi|147858253|emb|CAN83921.1| hypothetical protein VITISV_011842 [Vitis vinifera]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/575 (58%), Positives = 427/575 (74%), Gaps = 5/575 (0%)

Query: 7   FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAP 66
            VVGQEFPDVK+ R A+++ AIA HFE++ IKSD  R+ AKC ++GCPWRI A KLP  P
Sbjct: 175 LVVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASDGCPWRIHAAKLPGVP 234

Query: 67  TFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIII 126
           TFTIR++   HTCG  A +GH QASV W+ + +E+RLR+N NYKPK+IL++IH+ +GI +
Sbjct: 235 TFTIRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITL 294

Query: 127 PYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVS 186
            YKQAWR KER +AA+ GS EEGY LLP YC+Q+KRTNPGSIA V+    DN FQRLF+S
Sbjct: 295 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQRLFIS 354

Query: 187 FNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWM 246
           F ASIYGFLN C P++ +    LKSKYLGTLL AT FD DG LFP+AFGV+D ENDE+WM
Sbjct: 355 FQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFDGDGALFPLAFGVVDEENDENWM 414

Query: 247 WFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKN 306
           WFLSE H  LE++ E+MP+LT +SD QKGI D V   FP +   FCMRHLS+S  KEF N
Sbjct: 415 WFLSELHNLLEVNTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNN 474

Query: 307 SRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSS 366
           + L +LLW+ A+A T + F+ ++ EIE++S +AA WI++ PP  WA  +FEGTR+GHL++
Sbjct: 475 TMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTA 534

Query: 367 NI-EEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAIN 425
           NI E  N WILEA  LPIIQ++E I  +LM  F  RR  S  W S+L PSAE+R+ EA+ 
Sbjct: 535 NIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALE 594

Query: 426 HASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVY 485
            A  YQVLR++E EFEV+S E ++IV+I   CC CR WQLYG+PC+HAVAAL+SCR++V+
Sbjct: 595 RARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVH 654

Query: 486 AFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQ----VVRPPKFRRPPGRPE 541
            F E CFTVA+YR+TY++ IHPIP +  W++  EG  +  +    ++ PPK  RPPGRP 
Sbjct: 655 RFTESCFTVATYRKTYSQTIHPIPDKTLWKELSEGDPNGSKSVEIMINPPKSLRPPGRPR 714

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEI 576
           KKR+  ED  R K  VHCSRCNQTGH++TTC A I
Sbjct: 715 KKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125676|ref|XP_002319648.1| predicted protein [Populus trichocarpa] gi|222858024|gb|EEE95571.1| predicted protein [Populus trichocarpa]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/575 (58%), Positives = 423/575 (73%), Gaps = 5/575 (0%)

Query: 7   FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAP 66
             VGQEFPDV + R A+++ AIA HFE++ IKSD  R+ AKC TEGCPWRI A KLP  P
Sbjct: 7   LAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCATEGCPWRIHAAKLPGVP 66

Query: 67  TFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIII 126
           TFTIR++  +HTCG  + +GH QASV W+ + +E+RL++N NY+PK+IL++IH+ +GI +
Sbjct: 67  TFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLKENPNYRPKEILEEIHRVHGITL 126

Query: 127 PYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVS 186
            YKQAWR KER +AA+ GS EEGY LLP YC+Q+KRTNPGSIA V+    DN FQ LF+S
Sbjct: 127 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQHLFIS 186

Query: 187 FNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWM 246
           F ASIYGFLN C P++ +    LKSKYLGTL  AT FD DG LFP+AFGV+D ENDE+WM
Sbjct: 187 FQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDEENDENWM 246

Query: 247 WFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKN 306
           WFLSE H  LEI+ E+MP+LT +SD QKGI D V   FP +   FCMRHLSES  KEF N
Sbjct: 247 WFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNN 306

Query: 307 SRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSS 366
           + L +LLW+ A+A T + F+ ++ EIE+VS +AA WI++ PP  WA  +FEGTR+GHL++
Sbjct: 307 TMLVNLLWEAAHALTVIEFEAKILEIEEVSQDAAYWIRRIPPRLWATAYFEGTRFGHLTA 366

Query: 367 NI-EEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAIN 425
           NI E  N WILEA  LPIIQ++E I  +LM  F  RR  S  W S+L PSAE+R+ EA+ 
Sbjct: 367 NIVESLNTWILEASGLPIIQMVECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALE 426

Query: 426 HASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVY 485
            A  YQVLR++E EFEV+S E ++IV+I   CC CR WQLYG+PC+HAVAAL+SCR++V+
Sbjct: 427 RARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVH 486

Query: 486 AFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQ----VVRPPKFRRPPGRPE 541
            F E CFTVA+YR+TY++ IHPIP +  W +  EG  D  +    ++ PPK  RPPGRP 
Sbjct: 487 RFTESCFTVATYRKTYSQTIHPIPDKSLWIEFSEGDPDSNKNVEVIINPPKSLRPPGRPR 546

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEI 576
           KKR+  ED  R K  VHCSRCNQTGH++TTC A I
Sbjct: 547 KKRVRAEDRGRMKRVVHCSRCNQTGHFRTTCAAPI 581

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/574 (58%), Positives = 424/574 (73%), Gaps = 7/574 (1%)

Query: 9   VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTF 68
           VGQEFPDVK+ R A+++ AIA HFE++ IKSD  R+ AKC +EGCPWRI A KLP  PTF
Sbjct: 178 VGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVPTF 237

Query: 69  TIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPY 128
           TIR++   HTCG  + +GH QASV W+ + +E+RL++N N KPK+IL++IH+ +GI + Y
Sbjct: 238 TIRTIHENHTCGGISHLGHQQASVQWVANSVEQRLKENPNCKPKEILEEIHRVHGITLSY 297

Query: 129 KQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFN 188
           KQAWR KER +AA+ GS EEGY LLP YCEQ+KRTNPGSIA V+   AD  FQRLF+SF 
Sbjct: 298 KQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADGCFQRLFISFQ 357

Query: 189 ASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWF 248
           ASIYGFLN C P++ +    LKSKYLGTLL AT FD DG LFP+AFGV+D END++WMWF
Sbjct: 358 ASIYGFLNPCRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWF 417

Query: 249 LSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSR 308
           LSE H  LEIH E+MP+LT +SD QKGI D V   FP +   FCMRHLS+S  KEF N+ 
Sbjct: 418 LSELHNLLEIHTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNTM 477

Query: 309 LTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSSNI 368
           L +LLW+ A A T + F+ ++ EIE++S +AA WI++ PP  WA  +FEG R+GHL++NI
Sbjct: 478 LVNLLWEAANALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGHRFGHLTANI 537

Query: 369 -EEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAINHA 427
            E  N WILEA  LPIIQ++E I  +LM  F  RR  S  W S+L PSAE+R+ EA++ A
Sbjct: 538 VESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALDRA 597

Query: 428 SMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAF 487
             YQVLR+++ EFEV++ E ++IV+I   CC CR WQLYG+PC+HAVAAL+SCR++V+ F
Sbjct: 598 RTYQVLRANDAEFEVITHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRF 657

Query: 488 AEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQ-----VVRPPKFRRPPGRPEK 542
            E CFTVA+YR+TY++ IHPIP +  W++  EG D  +      V+ PPK  RPPGRP K
Sbjct: 658 TESCFTVATYRKTYSQTIHPIPDKSLWKELSEG-DANVSKATEVVINPPKSLRPPGRPRK 716

Query: 543 KRICLEDLNREKHTVHCSRCNQTGHYKTTCKAEI 576
           KR+  ED  R K  VHCSRCNQTGH++TTC A I
Sbjct: 717 KRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 750

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115958|ref|XP_002332013.1| predicted protein [Populus trichocarpa] gi|222875238|gb|EEF12369.1| predicted protein [Populus trichocarpa]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/571 (57%), Positives = 421/571 (73%), Gaps = 5/571 (0%)

Query: 7   FVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAP 66
             VGQEFPDV + R A+++ AIA HFE++ IKSD  R+ AKC +EGCPWRI A KLP  P
Sbjct: 1   MAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVP 60

Query: 67  TFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIII 126
           TFTIR++  +HTCG  + +GH QASV W+ + +E+RL++N NYKPK+IL++IH+ +GI +
Sbjct: 61  TFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLKENPNYKPKEILEEIHRVHGITL 120

Query: 127 PYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVS 186
            YKQAWR KER +AA+ GS EEGY LLP YC+Q+KRTNPGSIA V+    DN FQRLF+S
Sbjct: 121 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQRLFIS 180

Query: 187 FNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWM 246
           F ASIYGFLN C P++ +    LKSKYLGTL  AT FD DG LFP+AFGV+D E +E+WM
Sbjct: 181 FQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDEETEENWM 240

Query: 247 WFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKN 306
           WFLSE H  LEI+ E+MP+LT +SD QKGI D V   FP +   FCMRHLSES  KEF N
Sbjct: 241 WFLSELHSLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNN 300

Query: 307 SRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHWALVHFEGTRYGHLSS 366
           + L +LLW+ A+A T + F+ ++ EIE++S +AA WI++ PP  WA  +FEGTR+GHL++
Sbjct: 301 TMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTA 360

Query: 367 NI-EEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSVLAPSAEKRMIEAIN 425
           NI E  N WILEA  LPIIQ++E I  +LM  F  RR  S  W S+L PSAE+R+ EA+ 
Sbjct: 361 NIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALE 420

Query: 426 HASMYQVLRSDEVEFEVLSAERSDIVNIGTHCCSCRDWQLYGIPCSHAVAALISCRKDVY 485
            A  YQVLR++E EFEV+S E ++IV+I   CC CR WQLYG+PC+HAVAAL+SCR++V+
Sbjct: 421 RARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVH 480

Query: 486 AFAEKCFTVASYRQTYAEEIHPIPGRIEWRKTGEGIDDEIQ----VVRPPKFRRPPGRPE 541
            F E CFTVA+YR+TY++ IHPIP +  W +  +G  +  +    V+ PPK  RPPGRP 
Sbjct: 481 RFTESCFTVATYRKTYSQTIHPIPDKSLWTELSDGDPNSNKAIEVVINPPKSLRPPGRPR 540

Query: 542 KKRICLEDLNREKHTVHCSRCNQTGHYKTTC 572
           KKR+  ED  R K  VHCSRCNQTGH++TTC
Sbjct: 541 KKRVRAEDRGRVKRVVHCSRCNQTGHFRTTC 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.847	0.687	0.255	8.2e-36
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.852	0.662	0.218	3.7e-28
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.602	0.447	0.241	6.5e-26
ASPGD|ASPL0000006623	394	AN6174 [Emericella nidulans (t	0.210	0.312	0.305	0.0004

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.2e-36, P = 8.2e-36
 Identities = 138/541 (25%), Positives = 236/541 (43%)

Query:     1 MEEDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAV 60
             +++DH+  +G  F D    + A+    I +     + +++   Y  +CV   C W +RA 
Sbjct:   179 IDDDHDMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAA 238

Query:    61 KLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHK 120
             ++       I    G HTC        H+   D+   F  + +   +  +P   + ++ K
Sbjct:   239 RMEEHGLVEITKYTGPHTCS-------HEYPNDFESEFAADEIERVVRIQPTLSIAELKK 291

Query:   121 QYGIIIPYK-QAWRAKERGLAAI---YGSSEEGYCLLPSYCEQIKRTNPGSIAE----VF 172
              +     Y+ Q  + ++  L  I   +G  ++ + ++P        +N G + +    +F
Sbjct:   292 WWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLF 350

Query:   173 TTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPI 232
                    F+ +F SF+ SI GF + C P++ +    L  KY   L+ A+  DA    FP+
Sbjct:   351 PNPDFASFRGVFWSFSQSIEGFQH-CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPL 409

Query:   233 AFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRR-----KFPNS 287
             AF V    + +SW WF ++  + +    +    L  IS   + I   V       + P +
Sbjct:   410 AFAVTKEVSTDSWRWFFTKIREKVTQRKD----LCLISSPLRDIVAVVNEPGSLWQEPWA 465

Query:   288 SLAFCMRHL-SESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQY 346
                FC+ HL S+ +G  F++  L  L+ +         F   M +I++ + EA KW+ Q 
Sbjct:   466 HHKFCLNHLRSQFLGV-FRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQI 524

Query:   347 PPSHWALVHFEGTRYGHLSSNIEEFNRWILEA--RELPIIQVIEQIHCKLMA-EFEARRL 403
             P   WAL H  G RYG     I E +R  L A  R  P   V       LM  E  +   
Sbjct:   525 PRHKWALAHDSGLRYG-----IIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFD 579

Query:   404 KS-SSWFSVL-------APSAEKRMIEAINHASMYQVLRSDEVEFEVL-SAERSD-IVNI 453
             KS SS +S L        P  +K + E +  +  Y + + +   F+V  S+E+ + IV +
Sbjct:   580 KSLSSIYSSLNRGVVYTEPFMDK-LEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQL 638

Query:   454 GTHCCSCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIE 513
                 C+CR +Q Y  PC HA+A     + +   + ++C+TV  Y +TYA    P+P    
Sbjct:   639 NVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAA 698

Query:   514 W 514
             W
Sbjct:   699 W 699

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 3.7e-28, P = 3.7e-28
 Identities = 117/536 (21%), Positives = 215/536 (40%)

Query:     3 EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKL 62
             +DH+  VG  F D    + A+   ++    +  + ++    Y  +C+   C W + A ++
Sbjct:   188 DDHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARM 247

Query:    63 PNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY 122
                    I    G HTC       H     D+   F  + +   + Y P   + ++ K +
Sbjct:   248 KKHGLVEIIKYTGPHTC-------HPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWW 300

Query:   123 GIIIPYK----QAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAE----VFTT 174
                I Y+        AKE+ +  ++G  ++ +   P     +  +N G + +    +F  
Sbjct:   301 KKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSN-GLLVDWKYDLFPN 359

Query:   175 GADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAF 234
                  F  +F +F  SI GF + C P++ +    L  +Y   L+ A+  DA    FP+AF
Sbjct:   360 PNFASFCGVFWAFPQSIEGFQH-CRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418

Query:   235 GVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRR-----KFPNSSL 289
              V    + + W WFL+   + +         L  IS     I   V       + P +  
Sbjct:   419 AVTKEVSTDIWRWFLTGIREKVT----QRKGLCLISSPHPDIIAVVNESGSQWQEPWAYH 474

Query:   290 AFCMRHLSESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPPS 349
              F + H      + F +  L   + +    +    F   M +I++ + EA KW+ Q+P +
Sbjct:   475 RFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQN 534

Query:   350 HWALVHFEGTRYGHLSSNIEEF----NRWILEARELP--IIQVIEQIHCKLMAEFEARRL 403
              WAL H  G RYG +  N +      N +      +   ++ + +++  K    F   R 
Sbjct:   535 RWALAHDNGRRYGIMEINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRS 594

Query:   404 KSSSWFSVLAPSAEKRMIEAINHASM---YQVLRSDEVEFEVLSA-ERSD-IVNIGTHCC 458
               +       P  +K  +E      +   Y V   D   F+V +A ++ + IV +    C
Sbjct:   595 SLNCGDVYTEPVMDK--LEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSC 652

Query:   459 SCRDWQLYGIPCSHAVAALISCRKDVYAFAEKCFTVASYRQTYAEEIHPIPGRIEW 514
             +C D+Q Y  PC HA+A     + +   + + C+T+   ++TYA     +P    W
Sbjct:   653 TCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAW 708

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
 Identities = 92/381 (24%), Positives = 163/381 (42%)

Query:     9 VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTF 68
             VG  F D+   + A+   +I +  +  + +++   Y  +C    C W I A +      F
Sbjct:   182 VGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLF 241

Query:    69 TIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGI---- 124
              I    G H C     +    A  + I   IE  +R        ++ +   K++G     
Sbjct:   242 EITECSGPHDCYPE-HLNDFDA--ECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQ 298

Query:   125 IIPYKQAWR---AKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAE----VFTTGAD 177
             ++ +        AK + +   +G  ++ + L+P     +  +N G + +      T   +
Sbjct:   299 VVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMSVLHSSN-GLLVDWQYDSLTHDPE 357

Query:   178 NR-FQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGV 236
             +  F+ LF +F+ SI GF + C P++ +    L  KY   L+ A++FDA    FP+AF V
Sbjct:   358 HASFRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAV 416

Query:   237 IDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRR-----KFPNSSLAF 291
                 + +SW WFL+   + +         +  IS     I   +       K P +   F
Sbjct:   417 TKEVSVDSWRWFLTRIREKVT----QRQGICLISSPDPDILAVINEPGSQWKEPWAYHRF 472

Query:   292 CMRHLSE---SIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQYPP 348
             C+ HL     S+   F +  +  L+ +   ++    F   M EI++ + EA KW+ Q+PP
Sbjct:   473 CLYHLCSKLCSVSPGF-DYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPP 531

Query:   349 SHWALVHFEGTRYGHLSSNIE 369
               WAL H +G RYG +  + E
Sbjct:   532 HQWALAHDDGRRYGIMRIDTE 552

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000006623 AN6174 [Emericella nidulans (taxid:162425)]

 Score = 120 (47.3 bits), Expect = 0.00040, P = 0.00040
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:     9 VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTE-GCPWRIRAVKLPNAPT 67
             VGQ F  ++ F+  ++  ++ QH+ELR+ +S+       C +   C +R+      NA T
Sbjct:    10 VGQRFASLEDFKALVRSISVRQHWELRVTRSNKKSVVIGCRSSPNCFFRVVCRANRNA-T 68

Query:    68 FTIRSLEGTHTCGKNAQI-----GHHQAS-VDWIVSFIEERLRDNIN-YKPKDILQDIHK 120
             + I SL+ +H+C +NA          +AS V +++S I  +L D  N  K +DI+  + +
Sbjct:    69 Y-ISSLQDSHSCRRNATSTTKTPARSEASHVRFLLSEIP-KLFDMRNKIKAQDIVDAVKR 126

Query:   121 QYGIIIPYKQAWRA 134
              +G  I  +QA RA
Sbjct:   127 YHGYDISTRQAQRA 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      583       567   0.00079  120 3  11 22  0.49    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  635 (67 KB)
  Total size of DFA:  363 KB (2178 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.51u 0.12s 49.63t   Elapsed:  00:00:02
  Total cpu time:  49.51u 0.12s 49.63t   Elapsed:  00:00:02
  Start:  Sat May 11 10:13:16 2013   End:  Sat May 11 10:13:18 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IX000390 hypothetical protein (589 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	583
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	3e-21
pfam10551	88	pfam10551, MULE, MULE transposase domain	7e-20
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	2e-08
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	2e-07

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 31/67 (46%), Positives = 41/67 (61%)

Query: 4  DHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLP 63
               VGQ F   + F+ A+++ AI   FE ++ KSD  RY AKC  EGCPWR+RA KL 
Sbjct: 1  GPELEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLK 60

Query: 64 NAPTFTI 70
          ++ TF I
Sbjct: 61 DSDTFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 84.0 bits (208), Expect = 7e-20
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 206 GIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQ 265
           G  L +KY G    A   D  G  FP+AF ++  E++ESW WFL    KAL       P 
Sbjct: 1   GTYLTNKYKG----AVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGR----PP 52

Query: 266 LTFISDGQKGIADAVRRKFPNSSLAFCMRHLSE 298
           LT ISDG KG+  A++  FPN+    C+ H+  
Sbjct: 53  LTIISDGDKGLKKAIKEVFPNARHRLCLWHILR 85

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 457 CCSCRDWQLYGIPCSHAVAALISCRKD 483
            CSCR +QL GIPC HA+AA I     
Sbjct: 2   TCSCRKFQLSGIPCRHALAAAIHIGLS 28

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 449 DIVNIGTHCCSCRDWQLYGIPCSHAVAALISC 480
           D+ ++    CSC  +QLYGIPC HA+A L++ 
Sbjct: 6   DLDDLVKASCSCPAFQLYGIPCKHALAVLLAL 37

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	583
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.88
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.84
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.7
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.56
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.95
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.94
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.72
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.27
PF00098	18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	96.3
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.84
PF15288	40	zf-CCHC_6: Zinc knuckle	95.56
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	95.32
PF13610	140	DDE_Tnp_IS240: DDE domain	95.24
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	94.49
PF13696	32	zf-CCHC_2: Zinc knuckle	93.53
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.16
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	91.1
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	90.52
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	90.27
COG3316	215	Transposase and inactivated derivatives [DNA repli	89.96
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	89.43
PHA02517	277	putative transposase OrfB; Reviewed	88.93
PF14392	49	zf-CCHC_4: Zinc knuckle	88.1
PF13565	77	HTH_32: Homeodomain-like domain	85.7
smart00343	26	ZnF_C2HC zinc finger.	85.41
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	83.33
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	82.88
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	81.57

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=2.9e-76  Score=639.00  Aligned_cols=471  Identities=16%  Similarity=0.222  Sum_probs=377.6

Q ss_pred             CCcccccCeeCCHHHHHHHHHHHHHhcceeEEEEeecC-------eEEEEEeec--------------------------
Q 007973            4 DHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDL-------IRYFAKCVT--------------------------   50 (583)
Q Consensus         4 ~~~l~~G~~F~s~~e~~~ai~~ya~~~gf~~~~~ks~~-------~r~~~~C~~--------------------------   50 (583)
                      +..|.+||+|+|.+||++||+.||...||++++.+|.+       ...+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            45689999999999999999999999999999855432       123466653                          


Q ss_pred             --------CCCceEEEEEEeCCCCceEEEeecccceecCCCccccccchhhHHHHHHHHHhhcCCCCChHHHHHHHHHHh
Q 007973           51 --------EGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQIGHHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQY  122 (583)
Q Consensus        51 --------~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~~~~~~~~~s~~~la~~~~~~l~~~~~~~p~~i~~~l~~~~  122 (583)
                              +||++++++++. .+++|.|+.++.+|||++.+.......+.+.+.. +...+....++..      +..+.
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~-~~~~~~~~~~v~~------~~~d~  222 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAA-MARQFAEYKNVVG------LKNDS  222 (846)
T ss_pred             cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHH-HHhhhhccccccc------cchhh
Confidence                    479999999874 5588999999999999998654321111111111 1000111001000      00000


Q ss_pred             CcccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEEecCCCCceEEEEEehHhHHHhhhcCcccEE
Q 007973          123 GIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIV  202 (583)
Q Consensus       123 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~vv  202 (583)
                           .......++.  ..    ..+..+.|.+|+++++.+||+|+|+ ++.|++++++++||+++.++.+|. +|+|||
T Consensus       223 -----~~~~~~~r~~--~~----~~gD~~~ll~yf~~~q~~nP~Ffy~-~qlDe~~~l~niFWaD~~sr~~Y~-~FGDvV  289 (846)
T PLN03097        223 -----KSSFDKGRNL--GL----EAGDTKILLDFFTQMQNMNSNFFYA-VDLGEDQRLKNLFWVDAKSRHDYG-NFSDVV  289 (846)
T ss_pred             -----cchhhHHHhh--hc----ccchHHHHHHHHHHHHhhCCCceEE-EEEccCCCeeeEEeccHHHHHHHH-hcCCEE
Confidence                 0001111111  11    1234677999999999999999999 799999999999999999999999 699999


Q ss_pred             EeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHHhhh
Q 007973          203 SIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRR  282 (583)
Q Consensus       203 ~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~Ai~~  282 (583)
                      .||+||++|+|++||..++|+|+|+|+++||+||+.+|+.|+|.|||++|+++|+    +.+|.+||||++.+|.+||++
T Consensus       290 ~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~----gk~P~tIiTDqd~am~~AI~~  365 (846)
T PLN03097        290 SFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMG----GQAPKVIITDQDKAMKSVISE  365 (846)
T ss_pred             EEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhC----CCCCceEEecCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999    999999999999999999999


Q ss_pred             cCCCCccccchhHHHHHHhhhccC-----chhhHHHHHHHH-ccCHHHHHHHHHHHH-hcCHHHHHHHHhC--CCCCccc
Q 007973          283 KFPNSSLAFCMRHLSESIGKEFKN-----SRLTHLLWKVAY-ATTTMAFKERMGEIE-DVSSEAAKWIQQY--PPSHWAL  353 (583)
Q Consensus       283 vfP~a~~~~C~~Hi~~n~~~~~~~-----~~~~~~~~~~~~-~~t~~~f~~~~~~l~-~~~~~~~~~l~~~--~~~~W~~  353 (583)
                      |||++.|++|+|||++|+.++++.     ..|...|..+++ +.+++||+..|..|. .++.+.++||..+  .+++|++
T Consensus       366 VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWap  445 (846)
T PLN03097        366 VFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVP  445 (846)
T ss_pred             HCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhH
Confidence            999999999999999999999864     378889998876 569999999999976 5688999999998  5899999


Q ss_pred             cccCCccc-ccccccHHH-HHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHHHhh-----------------hhcccCCC
Q 007973          354 VHFEGTRY-GHLSSNIEE-FNRWILEA--RELPIIQVIEQIHCKLMAEFEARRLK-----------------SSSWFSVL  412 (583)
Q Consensus       354 ~~~~~~~~-~~~ttn~~E-~n~~lk~~--~~~~i~~~~e~i~~~~~~~~~~r~~~-----------------~~~~~~~~  412 (583)
                      +|+.+.++ |+.||+++| +|+.|++.  ..++|..|++.+...+..+.+...+.                 ..+....|
T Consensus       446 aY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iY  525 (846)
T PLN03097        446 TYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVY  525 (846)
T ss_pred             HHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHh
Confidence            99976666 555777999 99999994  68999999999888776655443322                 12345799


Q ss_pred             ChhHHHHHHHHHhhcCceEEEecC----CeeEEEEe--cCceEEEec----cCcccccCCccccCCCchhHHHHHHhcCC
Q 007973          413 APSAEKRMIEAINHASMYQVLRSD----EVEFEVLS--AERSDIVNI----GTHCCSCRDWQLYGIPCSHAVAALISCRK  482 (583)
Q Consensus       413 tp~~~~~~~~~~~~a~~~~v~~~~----~~~~~V~~--~~~~~~V~~----~~~~CsC~~~~~~giPC~H~lav~~~~~~  482 (583)
                      ||.+|++||+++..+..|.+...+    ..+|.|..  ....|.|..    .+.+|+|++|+..||||+|||.|+.+.++
T Consensus       526 T~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v  605 (846)
T PLN03097        526 THAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQL  605 (846)
T ss_pred             HHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCc
Confidence            999999999999999888876642    24788876  345677743    36899999999999999999999999998


Q ss_pred             --Ccccccccccccccccc
Q 007973          483 --DVYAFAEKCFTVASYRQ  499 (583)
Q Consensus       483 --~~~~~v~~~yt~~~~~~  499 (583)
                        .|+.||.+|||+++-..
T Consensus       606 ~~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        606 SAIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             ccCchhhhhhhchhhhhhc
Confidence              59999999999998543

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.88  E-value=4e-23  Score=169.29  Aligned_cols=90  Identities=33%  Similarity=0.667  Sum_probs=86.5

Q ss_pred             ceEeecccccEEEE---EeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHHhhh
Q 007973          206 GIQLKSKYLGTLLS---ATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRR  282 (583)
Q Consensus       206 ~t~~~~~y~~~l~~---~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~Ai~~  282 (583)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++    .. |.+||||++.|+.+||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~----~~-p~~ii~D~~~~~~~Ai~~   74 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP----QK-PKVIISDFDKALINAIKE   74 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc----cC-ceeeeccccHHHHHHHHH
Confidence            79999999 98886   99999999999999999999999999999999999998    56 999999999999999999


Q ss_pred             cCCCCccccchhHHHHHHh
Q 007973          283 KFPNSSLAFCMRHLSESIG  301 (583)
Q Consensus       283 vfP~a~~~~C~~Hi~~n~~  301 (583)
                      +||++.|++|.||+.+|++
T Consensus        75 vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   75 VFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             HCCCceEehhHHHHHHhhC
Confidence            9999999999999999985

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.84  E-value=1e-21  Score=201.68  Aligned_cols=223  Identities=21%  Similarity=0.281  Sum_probs=184.3

Q ss_pred             CCCCChHHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEEecCCCCceEEEE
Q 007973          106 NINYKPKDILQDIHKQYG-IIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLF  184 (583)
Q Consensus       106 ~~~~~p~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~~~~~~~~~~~~f  184 (583)
                      -.|++.++|.+.+..-+| ..+|.+++.+..+.+.+..           ..|.    ...                    
T Consensus       112 ~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w~----~R~--------------------  156 (381)
T PF00872_consen  112 LKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAWR----NRP--------------------  156 (381)
T ss_pred             ccccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHHh----hhc--------------------
Confidence            468999999999999999 7899999988877765542           1121    111                    


Q ss_pred             EehHhHHHhhhcCc-ccEEEeeceEeecccc-----cEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcc
Q 007973          185 VSFNASIYGFLNGC-LPIVSIGGIQLKSKYL-----GTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEI  258 (583)
Q Consensus       185 ~~~~~~~~~~~~~~-~~vv~~D~t~~~~~y~-----~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~  258 (583)
                               .. .. -++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+.+.|+.++|.-||+.|++.+. 
T Consensus       157 ---------L~-~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl-  225 (381)
T PF00872_consen  157 ---------LE-SEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGL-  225 (381)
T ss_pred             ---------cc-cccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccc-
Confidence                     00 23 3789999999987643     5689999999999999999999999999999999999999875 


Q ss_pred             cccCCCCeEEEccCcccHHHHhhhcCCCCccccchhHHHHHHhhhccCc---hhhHHHHHHHHccCHHHHHHHHHHHHh-
Q 007973          259 HAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNS---RLTHLLWKVAYATTTMAFKERMGEIED-  334 (583)
Q Consensus       259 ~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~~~t~~~f~~~~~~l~~-  334 (583)
                          ..|..||+|+++||.+||+++||++.++.|.+|+++|+.++++..   .+...++.+..+.+.+++...++++.+ 
T Consensus       226 ----~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~  301 (381)
T PF00872_consen  226 ----KDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEK  301 (381)
T ss_pred             ----cccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccc
Confidence                569999999999999999999999999999999999999999765   667778888888888888888888754 


Q ss_pred             ---cCHHHHHHHHhCCCCCcccccc-CCcccccccccHHH-HHHHHhhc
Q 007973          335 ---VSSEAAKWIQQYPPSHWALVHF-EGTRYGHLSSNIEE-FNRWILEA  378 (583)
Q Consensus       335 ---~~~~~~~~l~~~~~~~W~~~~~-~~~~~~~~ttn~~E-~n~~lk~~  378 (583)
                         .+|.+.+++++...+.|+..-+ ...+--+.|||..| +|+.|++.
T Consensus       302 ~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr  350 (381)
T PF00872_consen  302 WEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRR  350 (381)
T ss_pred             cccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhh
Confidence               4788999999877677765534 44445678999999 99999883

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.70  E-value=5.6e-17  Score=123.03  Aligned_cols=67  Identities=46%  Similarity=0.852  Sum_probs=65.1

Q ss_pred             CCcccccCeeCCHHHHHHHHHHHHHhcceeEEEEeecCeEEEEEeecCCCceEEEEEEeCCCCceEE
Q 007973            4 DHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVTEGCPWRIRAVKLPNAPTFTI   70 (583)
Q Consensus         4 ~~~l~~G~~F~s~~e~~~ai~~ya~~~gf~~~~~ks~~~r~~~~C~~~gC~wrv~~~~~~~~~~~~v   70 (583)
                      ||.|.+||+|+|++|++.||..||+..+|++++.+|++.+++++|...||||+|+|+..++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            7899999999999999999999999999999999999999999999999999999999999999976

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.56  E-value=1.3e-13  Score=138.70  Aligned_cols=235  Identities=15%  Similarity=0.150  Sum_probs=177.3

Q ss_pred             CCCCChHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEEecCCCCceEEEEE
Q 007973          106 NINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFV  185 (583)
Q Consensus       106 ~~~~~p~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~~~~~~~~~~~~f~  185 (583)
                      ..|++++++.+.+++.++..++...+.+......+.+               .+++..-+                    
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v---------------~~~~~r~l--------------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKV---------------KAWQNRPL--------------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHH---------------HHHHhccc--------------------
Confidence            4689999999999999998888888777766655442               22222211                    


Q ss_pred             ehHhHHHhhhcCcccEEEeeceEeecc--cccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCC
Q 007973          186 SFNASIYGFLNGCLPIVSIGGIQLKSK--YLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESM  263 (583)
Q Consensus       186 ~~~~~~~~~~~~~~~vv~~D~t~~~~~--y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~  263 (583)
                                 +..+++++||+|++-+  -+..+++|+|++.+|+..++|+.+...|+ ..|.-||..|+..+.     .
T Consensus       143 -----------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl-----~  205 (379)
T COG3328         143 -----------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGL-----S  205 (379)
T ss_pred             -----------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccc-----c
Confidence                       2457899999999987  45789999999999999999999999999 999999999998764     4


Q ss_pred             CCeEEEccCcccHHHHhhhcCCCCccccchhHHHHHHhhhccCch---hhHHHHHHHHccCHHHHHHHHHHHH----hcC
Q 007973          264 PQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNSR---LTHLLWKVAYATTTMAFKERMGEIE----DVS  336 (583)
Q Consensus       264 ~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~~---~~~~~~~~~~~~t~~~f~~~~~~l~----~~~  336 (583)
                      ....+++|+.+|+.+||.++||.+.++.|..|+.+|+..+...+.   ....+..+..+.+.++....|..+.    ...
T Consensus       206 ~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~y  285 (379)
T COG3328         206 DVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRY  285 (379)
T ss_pred             ceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhc
Confidence            556677799999999999999999999999999999999988763   3344555555667776666666644    346


Q ss_pred             HHHHHHHHhCCCCCcc-ccccCCcccccccccHHH-HHHHHhhc----cCCcHHHHHHHHHH
Q 007973          337 SEAAKWIQQYPPSHWA-LVHFEGTRYGHLSSNIEE-FNRWILEA----RELPIIQVIEQIHC  392 (583)
Q Consensus       337 ~~~~~~l~~~~~~~W~-~~~~~~~~~~~~ttn~~E-~n~~lk~~----~~~~i~~~~e~i~~  392 (583)
                      |....++.+..-+.|. ..|....+--+.|||..| +|+.++..    ...|-.+.+..+..
T Consensus       286 P~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~~y  347 (379)
T COG3328         286 PAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFPNEESVEKLVY  347 (379)
T ss_pred             chHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence            7777777776444442 333344445678999999 99977752    24555555554433

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.95  E-value=3.9e-10  Score=68.42  Aligned_cols=27  Identities=56%  Similarity=1.009  Sum_probs=25.1

Q ss_pred             cccccCCccccCCCchhHHHHHHhcCC
Q 007973          456 HCCSCRDWQLYGIPCSHAVAALISCRK  482 (583)
Q Consensus       456 ~~CsC~~~~~~giPC~H~lav~~~~~~  482 (583)
                      .+|||++|+..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.94  E-value=5.2e-09  Score=84.08  Aligned_cols=69  Identities=23%  Similarity=0.364  Sum_probs=65.0

Q ss_pred             eCCHHHHHHHHHHHHHhcceeEEEEeecCeEEEEEeec------------------------------------------
Q 007973           13 FPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCVT------------------------------------------   50 (583)
Q Consensus        13 F~s~~e~~~ai~~ya~~~gf~~~~~ks~~~r~~~~C~~------------------------------------------   50 (583)
                      |.+++|++.+|+.++...|+++.+.+|+...+.|+|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            88999999999999999999999999999999999952                                          


Q ss_pred             CCCceEEEEEEeCCCCceEEEeecccceecC
Q 007973           51 EGCPWRIRAVKLPNAPTFTIRSLEGTHTCGK   81 (583)
Q Consensus        51 ~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~   81 (583)
                      ..|||+|+|......+.|.|..++..|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            2799999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.72  E-value=2.4e-08  Score=81.00  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcceeEEEEeecC-------eEEEEEeec----------------------CCCceEEEEEEeCCCCceEEE
Q 007973           21 NAIKEAAIAQHFELRIIKSDL-------IRYFAKCVT----------------------EGCPWRIRAVKLPNAPTFTIR   71 (583)
Q Consensus        21 ~ai~~ya~~~gf~~~~~ks~~-------~r~~~~C~~----------------------~gC~wrv~~~~~~~~~~~~v~   71 (583)
                      +||+.||..+||++++.+|.+       .++.++|.+                      +||||+|.+.... ++.|.|.
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            479999999999999977654       378899974                      4899999999877 8999999


Q ss_pred             eecccceecCC
Q 007973           72 SLEGTHTCGKN   82 (583)
Q Consensus        72 ~~~~~H~c~~~   82 (583)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.27  E-value=6.9e-07  Score=59.83  Aligned_cols=30  Identities=43%  Similarity=0.817  Sum_probs=27.2

Q ss_pred             EeccCcccccCCccccCCCchhHHHHHHhc
Q 007973          451 VNIGTHCCSCRDWQLYGIPCSHAVAALISC  480 (583)
Q Consensus       451 V~~~~~~CsC~~~~~~giPC~H~lav~~~~  480 (583)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            566789999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.30  E-value=0.0027  Score=33.94  Aligned_cols=18  Identities=28%  Similarity=0.798  Sum_probs=16.3

Q ss_pred             eeCCccCcCCCCCCCCCC
Q 007973          557 VHCSRCNQTGHYKTTCKA  574 (583)
Q Consensus       557 ~~Cs~C~~~gHn~~tC~~  574 (583)
                      ++|-+|++.||.++.||.
T Consensus         1 ~~C~~C~~~GH~~~~Cp~   18 (18)
T PF00098_consen    1 RKCFNCGEPGHIARDCPK   18 (18)
T ss_dssp             SBCTTTSCSSSCGCTSSS
T ss_pred             CcCcCCCCcCcccccCcc
Confidence            369999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.84  E-value=0.41  Score=51.05  Aligned_cols=93  Identities=15%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             ccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHHhhhcCCCCccccchhHHHHHHhhhccCc-hhhHHHHHHH
Q 007973          239 VENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKNS-RLTHLLWKVA  317 (583)
Q Consensus       239 ~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~-~~~~~~~~~~  317 (583)
                      ..+.+-|.-+.+.+.+.....  ...-+++.+|+...+.+++. .+|++.+.+..+|+.+.+.+.++.. .+.+.++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~--~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al  311 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLD--KTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKAL  311 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcc--cceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            455788999999888877621  22246778999999988776 8999999999999999999988643 6677677777


Q ss_pred             HccCHHHHHHHHHHHHh
Q 007973          318 YATTTMAFKERMGEIED  334 (583)
Q Consensus       318 ~~~t~~~f~~~~~~l~~  334 (583)
                      +.....+++..++.+..
T Consensus       312 ~~~d~~~l~~~L~~~~~  328 (470)
T PF06782_consen  312 KKGDKKKLETVLDTAES  328 (470)
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            77888888888888764

>PF15288 zf-CCHC_6: Zinc knuckle

Probab=95.56  E-value=0.0064  Score=39.52  Aligned_cols=20  Identities=30%  Similarity=0.800  Sum_probs=17.3

Q ss_pred             ceeCCccCcCCCCC--CCCCCc
Q 007973          556 TVHCSRCNQTGHYK--TTCKAE  575 (583)
Q Consensus       556 ~~~Cs~C~~~gHn~--~tC~~~  575 (583)
                      +++|++||+.||.+  ++||..
T Consensus         1 k~kC~~CG~~GH~~t~k~CP~~   22 (40)
T PF15288_consen    1 KVKCKNCGAFGHMRTNKRCPMY   22 (40)
T ss_pred             CccccccccccccccCccCCCC
Confidence            46899999999998  789875

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=95.32  E-value=0.033  Score=54.25  Aligned_cols=94  Identities=14%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             EEeeceEeecccccEEEEEeeecC--CCCeeEEEEEEeeccccchHHHHHHHH-HHHhcccccCCCCeEEEccCcccHHH
Q 007973          202 VSIGGIQLKSKYLGTLLSATSFDA--DGGLFPIAFGVIDVENDESWMWFLSEF-HKALEIHAESMPQLTFISDGQKGIAD  278 (583)
Q Consensus       202 v~~D~t~~~~~y~~~l~~~~g~d~--~~~~~~~a~~~~~~E~~~~~~w~l~~l-~~~~~~~~~~~~~~~iitD~~~~l~~  278 (583)
                      |+||=+........  +..+.+|.  ++..+   +.++++-+.++..-||..+ -...     .....+|++|...+...
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~-----~~~v~~V~~Dm~~~y~~   70 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEE-----RKNVKVVSMDMSPPYRS   70 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCcccc-----ccceEEEEcCCCccccc
Confidence            46777666543332  33344444  33322   4578888888888888866 3332     46778999999999999


Q ss_pred             HhhhcCCCCccccchhHHHHHHhhhcc
Q 007973          279 AVRRKFPNSSLAFCMRHLSESIGKEFK  305 (583)
Q Consensus       279 Ai~~vfP~a~~~~C~~Hi~~n~~~~~~  305 (583)
                      |+++.||+|.+..-.|||++++.+.+.
T Consensus        71 ~~~~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   71 AIREYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             cccccccccccccccchhhhhhhhcch
Confidence            999999999999999999999987553

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=95.24  E-value=0.012  Score=51.68  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=67.5

Q ss_pred             ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973          199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD  278 (583)
Q Consensus       199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~  278 (583)
                      ++.+.+|-||.+.+ +-..+...++|.+++  +|++-+.+.-+...=..||+.+.+...     ..|..|+||+.++...
T Consensus         1 ~~~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~-----~~p~~ivtDk~~aY~~   72 (140)
T PF13610_consen    1 GDSWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR-----GEPRVIVTDKLPAYPA   72 (140)
T ss_pred             CCEEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec-----cccceeecccCCccch
Confidence            36789999998754 224566888999999  889999998888888888888877663     6889999999999999


Q ss_pred             HhhhcCCCC
Q 007973          279 AVRRKFPNS  287 (583)
Q Consensus       279 Ai~~vfP~a  287 (583)
                      |+++++|..
T Consensus        73 A~~~l~~~~   81 (140)
T PF13610_consen   73 AIKELNPEG   81 (140)
T ss_pred             hhhhccccc
Confidence            999999874

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=94.49  E-value=0.083  Score=38.50  Aligned_cols=39  Identities=26%  Similarity=0.585  Sum_probs=32.6

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceec
Q 007973           42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCG   80 (583)
Q Consensus        42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~   80 (583)
                      .|-.++|+..+|+++-.+.+..+++...++++..+|||+
T Consensus        21 pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   21 PRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             EEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            566799999999999999998888889999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF13696 zf-CCHC_2: Zinc knuckle

Probab=93.53  E-value=0.043  Score=33.89  Aligned_cols=25  Identities=32%  Similarity=0.673  Sum_probs=21.3

Q ss_pred             cCceeCCccCcCCCCCCCCCCcccc
Q 007973          554 KHTVHCSRCNQTGHYKTTCKAEIMK  578 (583)
Q Consensus       554 k~~~~Cs~C~~~gHn~~tC~~~~~~  578 (583)
                      ...+.|..|++.||..+.||...+.
T Consensus         6 P~~Y~C~~C~~~GH~i~dCP~~~Pk   30 (32)
T PF13696_consen    6 PPGYVCHRCGQKGHWIQDCPTNKPK   30 (32)
T ss_pred             CCCCEeecCCCCCccHhHCCCCCCC
Confidence            3568899999999999999986554

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.16  E-value=0.47  Score=34.61  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=25.8

Q ss_pred             cceeEEEEeecCeEEEEEeecC---CCceEEEEEEeCCCCceEEEeeccccee
Q 007973           30 QHFELRIIKSDLIRYFAKCVTE---GCPWRIRAVKLPNAPTFTIRSLEGTHTC   79 (583)
Q Consensus        30 ~gf~~~~~ks~~~r~~~~C~~~---gC~wrv~~~~~~~~~~~~v~~~~~~H~c   79 (583)
                      .|+.|...+.........|...   +|++++...    .+.-.+.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~----~~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD----AGDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE----CCCCEEEECCCccCC
Confidence            5778887777688888999874   899999997    233455666688887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=91.10  E-value=0.49  Score=48.39  Aligned_cols=55  Identities=18%  Similarity=0.387  Sum_probs=49.8

Q ss_pred             ccCeeCCHHHHHHHHHHHHHhcceeEEEEeecC-eEEEEEeecCCCceEEEEEEeC
Q 007973            9 VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDL-IRYFAKCVTEGCPWRIRAVKLP   63 (583)
Q Consensus         9 ~G~~F~s~~e~~~ai~~ya~~~gf~~~~~ks~~-~r~~~~C~~~gC~wrv~~~~~~   63 (583)
                      .|..|+++++-+.+|+.|......+|..+.|-+ +.++|.|.-..|||+|.++...
T Consensus        24 ~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   24 QARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             cccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            467899999999999999999999999998865 6799999999999999998643

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=90.52  E-value=0.96  Score=44.58  Aligned_cols=134  Identities=18%  Similarity=0.168  Sum_probs=86.1

Q ss_pred             CCCCChHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEEecCCCCceEEEEE
Q 007973          106 NINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFV  185 (583)
Q Consensus       106 ~~~~~p~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~~~~~~~~~~~~f~  185 (583)
                      ...++-..+.+.+.+. |+.+|.+++.+...+..+..           ....+.+.+.                      
T Consensus        18 ~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~----------------------   63 (271)
T PF03050_consen   18 VYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEE----------------------   63 (271)
T ss_pred             cCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhh----------------------
Confidence            4466777777777777 99999998887766654432           1122222211                      


Q ss_pred             ehHhHHHhhhcCcccEEEeeceEee----ccc-ccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccc
Q 007973          186 SFNASIYGFLNGCLPIVSIGGIQLK----SKY-LGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHA  260 (583)
Q Consensus       186 ~~~~~~~~~~~~~~~vv~~D~t~~~----~~y-~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~  260 (583)
                              ..  -.+|+.+|-|..+    ++. ++-+.++++-+      .+.|.+.++=+.+.-.-+|..         
T Consensus        64 --------~~--~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~---------  118 (271)
T PF03050_consen   64 --------LR--SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD---------  118 (271)
T ss_pred             --------cc--ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc---------
Confidence                    11  2578888988877    433 33444444433      555666666666655555442         


Q ss_pred             cCCCCeEEEccCcccHHHHhhhcCCCCccccchhHHHHHHhhhccC
Q 007973          261 ESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKEFKN  306 (583)
Q Consensus       261 ~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~  306 (583)
                         -.-+++||+..+-..     +.++.|+.|..|+.+.+..-...
T Consensus       119 ---~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  119 ---FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             ---cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence               224899999987655     22789999999999999876654

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>smart00774 WRKY DNA binding domain

Probab=90.27  E-value=0.44  Score=34.45  Aligned_cols=38  Identities=26%  Similarity=0.571  Sum_probs=32.1

Q ss_pred             eEEEEEeec-CCCceEEEEEEeCCCCceEEEeeccccee
Q 007973           42 IRYFAKCVT-EGCPWRIRAVKLPNAPTFTIRSLEGTHTC   79 (583)
Q Consensus        42 ~r~~~~C~~-~gC~wrv~~~~~~~~~~~~v~~~~~~H~c   79 (583)
                      -|-.++|+. .||+++=.+.+..+++...++.+..+|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            355689998 89999988888776778888899999997

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=89.96  E-value=5.1  Score=37.31  Aligned_cols=127  Identities=15%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             CChHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEEecCCCCceEEEEEehH
Q 007973          109 YKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFN  188 (583)
Q Consensus       109 ~~p~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~~~~~~~~~~~~f~~~~  188 (583)
                      ++-..+.+. ..+.|+.+...++++.-++.-..              +.+.+.+.++.                      
T Consensus        26 Ls~r~v~e~-l~~rgi~v~h~Ti~rwv~k~~~~--------------~~~~~~~r~~~----------------------   68 (215)
T COG3316          26 LSLRDVEEM-LAERGIEVDHETIHRWVQKYGPL--------------LARRLKRRKRK----------------------   68 (215)
T ss_pred             hhhccHHHH-HHHcCcchhHHHHHHHHHHHhHH--------------HHHHhhhhccc----------------------
Confidence            334444443 45569999999988876654322              23333333322                      


Q ss_pred             hHHHhhhcCcccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEE
Q 007973          189 ASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTF  268 (583)
Q Consensus       189 ~~~~~~~~~~~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~i  268 (583)
                               -.+++.+|-||.+.+-+. .+.-.++|.+|+  ++.+-+...-+...=.-||..+++..+      .|.+|
T Consensus        69 ---------~~~~w~vDEt~ikv~gkw-~ylyrAid~~g~--~Ld~~L~~rRn~~aAk~Fl~kllk~~g------~p~v~  130 (215)
T COG3316          69 ---------AGDSWRVDETYIKVNGKW-HYLYRAIDADGL--TLDVWLSKRRNALAAKAFLKKLLKKHG------EPRVF  130 (215)
T ss_pred             ---------cccceeeeeeEEeeccEe-eehhhhhccCCC--eEEEEEEcccCcHHHHHHHHHHHHhcC------CCceE
Confidence                     256788999998754222 233445566544  566777777666666667776666544      68899


Q ss_pred             EccCcccHHHHhhhcCCCCccc
Q 007973          269 ISDGQKGIADAVRRKFPNSSLA  290 (583)
Q Consensus       269 itD~~~~l~~Ai~~vfP~a~~~  290 (583)
                      +||+.+....|+.++-+.+.|+
T Consensus       131 vtDka~s~~~A~~~l~~~~ehr  152 (215)
T COG3316         131 VTDKAPSYTAALRKLGSEVEHR  152 (215)
T ss_pred             EecCccchHHHHHhcCcchhee
Confidence            9999999999999998866665

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=89.43  E-value=1.2  Score=37.28  Aligned_cols=75  Identities=15%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             ccEEEeeceEee-cccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHH
Q 007973          199 LPIVSIGGIQLK-SKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIA  277 (583)
Q Consensus       199 ~~vv~~D~t~~~-~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~  277 (583)
                      ..++.+|.++.. ...++..+..+.+|..-.. .+++.+-..++.+.+..+|.......+    ...|.+|+||+..+..
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~p~~i~tD~g~~f~   80 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRG----GRPPRVIRTDNGSEFT   80 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHH
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeecccccccccccccccccccc----cccceecccccccccc
Confidence            468999999765 3456688889999987765 457777777788888888887666665    3349999999998876


Q ss_pred             H
Q 007973          278 D  278 (583)
Q Consensus       278 ~  278 (583)
                      .
T Consensus        81 ~   81 (120)
T PF00665_consen   81 S   81 (120)
T ss_dssp             S
T ss_pred             c
Confidence            4

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PHA02517 putative transposase OrfB; Reviewed

Probab=88.93  E-value=1.8  Score=42.68  Aligned_cols=152  Identities=16%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhc-CCCCChHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHhCChHhhhcchHHHHHHHhhhCCCCEEEEE
Q 007973           94 WIVSFIEERLRD-NINYKPKDILQDIHKQYGIIIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVF  172 (583)
Q Consensus        94 ~la~~~~~~l~~-~~~~~p~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~np~~~~~~~  172 (583)
                      .+.+.+.+.... .+.++.+.|...|++. |+.++.++++|..+..     |-...        .. .+... ...-. .
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~--------~~-~k~~~-~~~~~-~   92 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV--------LR-GKKVR-TTISR-K   92 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE--------ec-CCCcC-CCCCC-C
Confidence            455556666554 5788999999998765 9999999998876542     11000        00 00000 00000 0


Q ss_pred             ecCCCCceEEEEEehHhHHHhhhcCcccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHH
Q 007973          173 TTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEF  252 (583)
Q Consensus       173 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l  252 (583)
                      .....+.+.+-|-+.         .-..++..|.||....- +..+.++.+|...+ .++|+.+...++.+...-+|+..
T Consensus        93 ~~~~~n~~~r~f~~~---------~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~l~~a  161 (277)
T PHA02517         93 AVAAPDRVNRQFVAT---------RPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDALEQA  161 (277)
T ss_pred             CCCCCCcccCCCCCC---------CCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHHHHHH
Confidence            000011111112111         13468999999986543 55677777777665 46788888777777554444444


Q ss_pred             HHHhcccccCCCCeEEEccCcccHH
Q 007973          253 HKALEIHAESMPQLTFISDGQKGIA  277 (583)
Q Consensus       253 ~~~~~~~~~~~~~~~iitD~~~~l~  277 (583)
                      ....+    ...+.+|.||+.....
T Consensus       162 ~~~~~----~~~~~i~~sD~G~~y~  182 (277)
T PHA02517        162 LWARG----RPGGLIHHSDKGSQYV  182 (277)
T ss_pred             HHhcC----CCcCcEeecccccccc
Confidence            33333    2334577799987653

>PF14392 zf-CCHC_4: Zinc knuckle

Probab=88.10  E-value=0.2  Score=34.90  Aligned_cols=21  Identities=24%  Similarity=0.676  Sum_probs=18.4

Q ss_pred             cCceeCCccCcCCCCCCCCCC
Q 007973          554 KHTVHCSRCNQTGHYKTTCKA  574 (583)
Q Consensus       554 k~~~~Cs~C~~~gHn~~tC~~  574 (583)
                      +-+..|++|+..||..+.||.
T Consensus        29 ~lp~~C~~C~~~gH~~~~C~k   49 (49)
T PF14392_consen   29 RLPRFCFHCGRIGHSDKECPK   49 (49)
T ss_pred             CcChhhcCCCCcCcCHhHcCC
Confidence            356789999999999999984

>PF13565 HTH_32: Homeodomain-like domain

Probab=85.70  E-value=2.2  Score=32.67  Aligned_cols=42  Identities=14%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHhhcCCCCChHHHHHHHHHHhCccc--CHHHHHHH
Q 007973           93 DWIVSFIEERLRDNINYKPKDILQDIHKQYGIII--PYKQAWRA  134 (583)
Q Consensus        93 ~~la~~~~~~l~~~~~~~p~~i~~~l~~~~g~~~--~~~~~~~~  134 (583)
                      ..+...+.+.+..+|.+++.+|.+.|.+++|+.+  |.+++||.
T Consensus        33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            3344567777778899999999999999999877  99999875

>smart00343 ZnF_C2HC zinc finger

Probab=85.41  E-value=0.43  Score=28.14  Aligned_cols=19  Identities=26%  Similarity=0.787  Sum_probs=16.3

Q ss_pred             eCCccCcCCCCCCCCCCcc
Q 007973          558 HCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       558 ~Cs~C~~~gHn~~tC~~~~  576 (583)
                      .|.+|++.||..+.||...
T Consensus         1 ~C~~CG~~GH~~~~C~~~~   19 (26)
T smart00343        1 KCYNCGKEGHIARDCPKXX   19 (26)
T ss_pred             CCccCCCCCcchhhCCccc
Confidence            4899999999999998443

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=83.33  E-value=0.51  Score=22.89  Aligned_cols=9  Identities=56%  Similarity=0.981  Sum_probs=3.6

Q ss_pred             CCCCCCCCc
Q 007973          535 RPPGRPEKK  543 (583)
Q Consensus       535 r~~GRpkk~  543 (583)
                      +++|||+|.
T Consensus         2 r~RGRP~k~   10 (13)
T PF02178_consen    2 RKRGRPRKN   10 (13)
T ss_dssp             --SS--TT-
T ss_pred             CcCCCCccc
Confidence            679999886

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=82.88  E-value=32  Score=33.61  Aligned_cols=147  Identities=13%  Similarity=0.085  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHhhcCCCCChHHHHHHHHHH---hCc-ccCHHHHHHHHHHH-HHHHhCChHhhhcchHHHHHHHhhhCCCC
Q 007973           93 DWIVSFIEERLRDNINYKPKDILQDIHKQ---YGI-IIPYKQAWRAKERG-LAAIYGSSEEGYCLLPSYCEQIKRTNPGS  167 (583)
Q Consensus        93 ~~la~~~~~~l~~~~~~~p~~i~~~l~~~---~g~-~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~~~~~~l~~~np~~  167 (583)
                      ..+...+.+....++.++...|...|+.+   .|+ .++..+++|..+.+ +....                 +...+.+
T Consensus        11 ~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~gL~~~~-----------------r~~~~~~   73 (262)
T PRK14702         11 TDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLER-----------------KPAVPPS   73 (262)
T ss_pred             HHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHhCCcccc-----------------CCCCCCC
Confidence            44555666666677889999999999875   366 48999988876553 10000                 0000000


Q ss_pred             EEEEEecCCCCceEEEEEehHhHHHhhhcCcccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeec-cccchHH
Q 007973          168 IAEVFTTGADNRFQRLFVSFNASIYGFLNGCLPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDV-ENDESWM  246 (583)
Q Consensus       168 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~-E~~~~~~  246 (583)
                      .     ......    |.         ...-..++..|-||.....++.++.++-+|...+ .+|||++... .+.+.-.
T Consensus        74 ~-----~~~~~~----~~---------~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~  134 (262)
T PRK14702         74 K-----RAHTGR----VA---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQ  134 (262)
T ss_pred             C-----cCCCCc----cc---------cCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHH
Confidence            0     000000    10         1112468999999986554557888888988777 6789999874 5656555


Q ss_pred             HHHHHHHHH-hcccccCCCCeEEEccCcccH
Q 007973          247 WFLSEFHKA-LEIHAESMPQLTFISDGQKGI  276 (583)
Q Consensus       247 w~l~~l~~~-~~~~~~~~~~~~iitD~~~~l  276 (583)
                      -+|+...+. .+. .....|.+|.||+....
T Consensus       135 ~~l~~A~~~~~~~-~~~~~~~iihSD~Gsqy  164 (262)
T PRK14702        135 DVMLGAVERRFGN-DLPSSPVEWLTDNGSCY  164 (262)
T ss_pred             HHHHHHHHHHhcc-cCCCCCeEEEcCCCccc
Confidence            566544333 220 00346788999998653

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=81.57  E-value=15  Score=32.56  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             cccEEEEEeeecCCCCeeEEEEEEe-eccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHHhh---hcCCCCc
Q 007973          213 YLGTLLSATSFDADGGLFPIAFGVI-DVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVR---RKFPNSS  288 (583)
Q Consensus       213 y~~~l~~~~g~d~~~~~~~~a~~~~-~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~Ai~---~vfP~a~  288 (583)
                      .+.+|+.++..-+.|-.|.=..-.- ...+.+...-+|+...+.++    ...-..||||....+..|-+   +.+|...
T Consensus        45 ~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG----~~nVvqVVTDn~~~~~~a~~~L~~k~p~if  120 (153)
T PF04937_consen   45 KGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEVG----EENVVQVVTDNASNMKKAGKLLMEKYPHIF  120 (153)
T ss_pred             CCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHhh----hhhhhHHhccCchhHHHHHHHHHhcCCCEE
Confidence            3344444444444444332222111 12345555566666655555    55667789999999888844   5689999


Q ss_pred             cccchhHHHHHHhhhccCc
Q 007973          289 LAFCMRHLSESIGKEFKNS  307 (583)
Q Consensus       289 ~~~C~~Hi~~n~~~~~~~~  307 (583)
                      ..-|.-|-+.-+.+.+...
T Consensus       121 w~~CaaH~inLmledi~k~  139 (153)
T PF04937_consen  121 WTPCAAHCINLMLEDIGKL  139 (153)
T ss_pred             EechHHHHHHHHHHHHhcC
Confidence            9999999988888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	583
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 74/560 (13%), Positives = 143/560 (25%), Gaps = 178/560 (31%)

Query: 87  HHQASVDWIVSFIEERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAK--ERGLAAIYG 144
           HH   +D+              Y+ KDIL            +   +  K  +    +I  
Sbjct: 2   HHHHHMDFETG--------EHQYQYKDILSVFED------AFVDNFDCKDVQDMPKSILS 47

Query: 145 SSEEGYCL-LPSYCEQIKR------TNPGSIAEVFTTGADNRFQRLFVSFNASIYGFLNG 197
             E  + +          R      +    + + F               N   Y FL  
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--------N---YKFLMS 96

Query: 198 CLPIVSIGGIQLKSKYLGTLLSATSFDA-------DGGLFPIAFGVIDVENDESWMWFLS 250
                      +K++     +    +         D  +F        V   +       
Sbjct: 97  ----------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQP----YL 138

Query: 251 EFHKALEIHAESMPQLTFISDGQKGI------ADAVR-----RKFPNSSLAFCMRHLSES 299
           +  +AL    E  P    + DG  G        D         K       F +     +
Sbjct: 139 KLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFWL-----N 188

Query: 300 IGKEFKNSRLTHLLWKVAYATTTM--AFKERMGEIEDVSSEAAKWI------QQYPPSHW 351
           +        +  +L K+ Y       +  +    I+         +      + Y     
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-- 246

Query: 352 ALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFSV 411
            LV         L  N++  N     A           + CK++     R          
Sbjct: 247 LLV---------L-LNVQ--NAKAWNAFN---------LSCKIL--LTTR---FKQVTDF 280

Query: 412 LAPSAEKRMIEAINHASMYQVLRSDEVEFEVLSAERSDIVNIGTHC-----CSCRDWQLY 466
           L+ +    +  +++H SM   L  DEV+  +L       ++           +       
Sbjct: 281 LSAATTTHI--SLDHHSM--TLTPDEVK-SLL----LKYLDCRPQDLPREVLT------- 324

Query: 467 GIPCSHA-VAALIS---CRKDVY---------AFAEKCFTV---ASYRQTYAE-EIHP-- 507
             P   + +A  I       D +            E    V   A YR+ +    + P  
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 508 --IPGR---IEWRKTGEGIDDEIQVVRPPKFRRPPGRPEKKRICLEDLNREKHTVHCSRC 562
             IP     + W    + I  ++ VV   K         K  +  +       ++     
Sbjct: 385 AHIPTILLSLIW---FDVIKSDVMVVV-NKLH-------KYSLVEKQPKESTISIP---- 429

Query: 563 NQTGHYKTTCKAEIMKSIEQ 582
             + + +   K E   ++ +
Sbjct: 430 --SIYLELKVKLENEYALHR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	583
1nc8_A	29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	96.29
1a6b_B	40	Momulv, zinc finger protein NCP10; nucleocapsid pr	95.09
1dsq_A	26	Nucleic acid binding protein P14; CCHC type zinc f	94.79
1u6p_A	56	GAG polyprotein; MLV, A-minor K-turn, stem loop, b	94.6
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	93.86
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	93.77
2ec7_A	49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	93.28
3hot_A	345	Transposable element mariner, complete CDS; protei	91.17
2a51_A	39	Nucleocapsid protein; sivlhoest, structure, NCP8,	89.52
2bl6_A	37	Nucleocapsid protein P11; lentivirus, polyprotein,	89.22
2a51_A	39	Nucleocapsid protein; sivlhoest, structure, NCP8,	88.85
1a1t_A	55	Nucleocapsid protein; stem-loop RNA, viral protein	88.73
2ysa_A	55	Retinoblastoma-binding protein 6; zinc finger, CCH	86.58
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	85.23
2ec7_A	49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	83.62
2bl6_A	37	Nucleocapsid protein P11; lentivirus, polyprotein,	83.52
2ihx_A	61	Nucleocapsid (NC) protein; protein-RNA complex, vi	82.91
1a1t_A	55	Nucleocapsid protein; stem-loop RNA, viral protein	82.59
2cqf_A	63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	81.83

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A

Probab=96.29  E-value=0.0016  Score=38.93  Aligned_cols=25  Identities=24%  Similarity=0.744  Sum_probs=21.4

Q ss_pred             CccCceeCCccCcCCCCCCCCCCcc
Q 007973          552 REKHTVHCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       552 ~~k~~~~Cs~C~~~gHn~~tC~~~~  576 (583)
                      ++++...|.+|++.||-.+.|+.+.
T Consensus         2 ~~r~~~~C~nCgk~GH~ar~C~~pr   26 (29)
T 1nc8_A            2 QQRKVIRCWNCGKEGHSARQCRAPR   26 (29)
T ss_dssp             CCCCCCBCTTTSCBSSCGGGCCSSS
T ss_pred             CCCCCCEEEECCccccCHhHCcccc
Confidence            3456788999999999999999874

>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1

Probab=95.09  E-value=0.015  Score=37.46  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=22.0

Q ss_pred             cCceeCCccCcCCCCCCCCCCccccc
Q 007973          554 KHTVHCSRCNQTGHYKTTCKAEIMKS  579 (583)
Q Consensus       554 k~~~~Cs~C~~~gHn~~tC~~~~~~~  579 (583)
                      .....|-+|++.||-++.||.+....
T Consensus         8 ~~~~~C~~Cgk~GH~ardCP~~~~~~   33 (40)
T 1a6b_B            8 LDRDQCAYCKEKGHWAKDCPKKPRGP   33 (40)
T ss_dssp             CCSSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred             CCCCeeeECCCCCcchhhCcCCcccC
Confidence            45678999999999999999987543

>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A

Probab=94.60  E-value=0.021  Score=39.83  Aligned_cols=28  Identities=18%  Similarity=0.547  Sum_probs=22.9

Q ss_pred             CccCceeCCccCcCCCCCCCCCCccccc
Q 007973          552 REKHTVHCSRCNQTGHYKTTCKAEIMKS  579 (583)
Q Consensus       552 ~~k~~~~Cs~C~~~gHn~~tC~~~~~~~  579 (583)
                      .......|-+||+.||-.+.||.+....
T Consensus        19 ~~~~~~~C~~Cge~GH~ardCp~~~~~~   46 (56)
T 1u6p_A           19 SQLDRDQCAYCKEKGHWAKDCPKKPRGP   46 (56)
T ss_dssp             TTCCTTBCSSSCCBSSCGGGCTTCCCSS
T ss_pred             CCCCCCcceeCCCCCcccccCcCCcccc
Confidence            3345678999999999999999987654

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=93.86  E-value=0.13  Score=38.19  Aligned_cols=41  Identities=22%  Similarity=0.494  Sum_probs=35.8

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973           42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN   82 (583)
Q Consensus        42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~   82 (583)
                      -|-.++|+..||+++-.+.+..++....++++..+|||+..
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            35569999999999999999887888889999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=93.77  E-value=0.14  Score=38.07  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=35.6

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973           42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN   82 (583)
Q Consensus        42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~   82 (583)
                      -|-.++|+..||+++-.+.+..++....++.+..+|||+..
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            35569999999999999998877788888899999999863

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1

Probab=93.28  E-value=0.045  Score=37.20  Aligned_cols=19  Identities=32%  Similarity=0.807  Sum_probs=11.3

Q ss_pred             eeCCccCcCCCCCCCCCCc
Q 007973          557 VHCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       557 ~~Cs~C~~~gHn~~tC~~~  575 (583)
                      ..|-+|++.||-.+.||.+
T Consensus        28 ~~C~~Cg~~GH~~~~C~~~   46 (49)
T 2ec7_A           28 QGCWKCGKTGHVMAKCPER   46 (49)
T ss_dssp             CSCSSSCCSSCCGGGCCSS
T ss_pred             CeeCcCCCcCCccCCCcCC
Confidence            4566666666666666653

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=91.17  E-value=3.9  Score=40.20  Aligned_cols=60  Identities=15%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             ccccEEEEEeeecCCCCeeEEEEEEee---ccccchHHHHHHHHHHHhcccccC----CCCeEEEccCcc
Q 007973          212 KYLGTLLSATSFDADGGLFPIAFGVID---VENDESWMWFLSEFHKALEIHAES----MPQLTFISDGQK  274 (583)
Q Consensus       212 ~y~~~l~~~~g~d~~~~~~~~a~~~~~---~E~~~~~~w~l~~l~~~~~~~~~~----~~~~~iitD~~~  274 (583)
                      ..++.+++..+++..|   .+++.+++   .-+.+.|.-+|+.+...+......    ..+.+|+.|...
T Consensus       186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~  252 (345)
T 3hot_A          186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP  252 (345)
T ss_dssp             TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred             CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence            4556777777777777   57777776   457788888888776554210001    346789999865

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}

Probab=89.52  E-value=0.15  Score=32.60  Aligned_cols=18  Identities=28%  Similarity=0.837  Sum_probs=11.2

Q ss_pred             eCCccCcCCCCCCCCCCc
Q 007973          558 HCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       558 ~Cs~C~~~gHn~~tC~~~  575 (583)
                      .|-+|++.||-++.||.+
T Consensus         2 ~C~~Cg~~GH~a~~C~~~   19 (39)
T 2a51_A            2 TCFNCGKPGHTARMCRQP   19 (39)
T ss_dssp             BCTTTCCBSSCTTTCCSC
T ss_pred             eeeccCCCCcccccCCCC
Confidence            466666666666666653

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}

Probab=89.22  E-value=0.17  Score=31.88  Aligned_cols=18  Identities=33%  Similarity=1.036  Sum_probs=11.1

Q ss_pred             eeCCccCcCCCCCCCCCC
Q 007973          557 VHCSRCNQTGHYKTTCKA  574 (583)
Q Consensus       557 ~~Cs~C~~~gHn~~tC~~  574 (583)
                      ..|-+|++.||-.+.||+
T Consensus        20 ~~C~~Cg~~GH~a~~C~~   37 (37)
T 2bl6_A           20 KVCFKCKQPGHFSKQCRS   37 (37)
T ss_dssp             TTCSSCCCTTGGGGTTCC
T ss_pred             CeEccCCCcCCccCcCcC
Confidence            556666666666666653

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}

Probab=88.85  E-value=0.2  Score=32.07  Aligned_cols=19  Identities=21%  Similarity=0.502  Sum_probs=17.1

Q ss_pred             ceeCCccCcCCCCCCCCCC
Q 007973          556 TVHCSRCNQTGHYKTTCKA  574 (583)
Q Consensus       556 ~~~Cs~C~~~gHn~~tC~~  574 (583)
                      ...|-+|++.||-.+.||+
T Consensus        21 ~~~C~~Cg~~GH~~~~C~~   39 (39)
T 2a51_A           21 QEGCWNCGSKEHRFAQCPK   39 (39)
T ss_dssp             CSSCTTTCCSSSCTTTSCC
T ss_pred             CCccccCCCCCCccCcCcC
Confidence            3589999999999999985

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A

Probab=88.73  E-value=0.14  Score=35.72  Aligned_cols=20  Identities=25%  Similarity=0.713  Sum_probs=13.3

Q ss_pred             ceeCCccCcCCCCCCCCCCc
Q 007973          556 TVHCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       556 ~~~Cs~C~~~gHn~~tC~~~  575 (583)
                      ...|-+|++.||-.+.||.+
T Consensus        33 ~~~C~~Cg~~GH~~~~C~~~   52 (55)
T 1a1t_A           33 KKGCWKCGKEGHQMKDCTER   52 (55)
T ss_dssp             CCBCTTTCCBSSCGGGCSSS
T ss_pred             CCEeCCCCCcCCccCCCcCc
Confidence            35677777777777777654

>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.58  E-value=0.31  Score=33.76  Aligned_cols=22  Identities=32%  Similarity=0.842  Sum_probs=19.0

Q ss_pred             cCceeCCccCcCCCCCCCCCCc
Q 007973          554 KHTVHCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       554 k~~~~Cs~C~~~gHn~~tC~~~  575 (583)
                      .+.+.|-+|++.||-.+.||..
T Consensus         5 p~~~~C~kCGk~GH~~k~Cp~~   26 (55)
T 2ysa_A            5 SSGYTCFRCGKPGHYIKNCPTN   26 (55)
T ss_dssp             SSSCCCTTTCCTTSCGGGCSGG
T ss_pred             CCCCccccCCCcCcccccCCCC
Confidence            3567899999999999999954

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=85.23  E-value=1.2  Score=34.16  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             cceeEEEEeecCeEEEEEeec---CCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973           30 QHFELRIIKSDLIRYFAKCVT---EGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN   82 (583)
Q Consensus        30 ~gf~~~~~ks~~~r~~~~C~~---~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~   82 (583)
                      .||.|...+....+....|..   .+|++++....    +.  + .....|||++.
T Consensus        26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~----~~--~-~~~~~HnH~p~   74 (87)
T 2rpr_A           26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG----HR--I-MVMRSHCHQPD   74 (87)
T ss_dssp             TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET----TE--E-EECSCCSSCCC
T ss_pred             CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC----CC--E-ECCCCcCCCCc
Confidence            477788777767777799987   58999988763    22  2 25677999774

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1

Probab=83.62  E-value=0.41  Score=32.30  Aligned_cols=24  Identities=25%  Similarity=0.754  Sum_probs=21.1

Q ss_pred             ccCceeCCccCcCCCCCCCCCCcc
Q 007973          553 EKHTVHCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       553 ~k~~~~Cs~C~~~gHn~~tC~~~~  576 (583)
                      +++...|-+|++.||..+.||.+.
T Consensus         3 ~~r~~~C~~Cg~~GH~a~~C~~~~   26 (49)
T 2ec7_A            3 QRKVIRCWNCGKEGHSARQCRAPR   26 (49)
T ss_dssp             CCCCCBCTTTCCBTCCTTTCCCSS
T ss_pred             CCCcCeeeecCCCCcChhhCcCCC
Confidence            466789999999999999999864

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}

Probab=83.52  E-value=0.41  Score=30.08  Aligned_cols=17  Identities=35%  Similarity=1.056  Sum_probs=15.6

Q ss_pred             eCCccCcCCCCCCCCCC
Q 007973          558 HCSRCNQTGHYKTTCKA  574 (583)
Q Consensus       558 ~Cs~C~~~gHn~~tC~~  574 (583)
                      .|-+|++.||..+.||.
T Consensus         2 ~C~~Cg~~GH~~~~C~~   18 (37)
T 2bl6_A            2 TCYNCGKPGHLSSQCRA   18 (37)
T ss_dssp             CBSSSCCSSCCTTTSSC
T ss_pred             cccccCCCCcchhhCcC
Confidence            59999999999999985

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}

Probab=82.91  E-value=0.41  Score=34.05  Aligned_cols=20  Identities=30%  Similarity=0.720  Sum_probs=14.4

Q ss_pred             eeCCccCcCCCCCCCCCCcc
Q 007973          557 VHCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       557 ~~Cs~C~~~gHn~~tC~~~~  576 (583)
                      ..|-+|++.||-.+.||.+-
T Consensus        31 ~~C~~Cg~~GH~ar~C~~~~   50 (61)
T 2ihx_A           31 ERCQLCNGMGHNAKQCRKRD   50 (61)
T ss_dssp             SBCTTTCCBSSCGGGCCCCC
T ss_pred             CeeCCCCCCCCCcCCCcCCC
Confidence            45777777777777777653

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A

Probab=82.59  E-value=0.44  Score=33.06  Aligned_cols=24  Identities=33%  Similarity=0.865  Sum_probs=20.7

Q ss_pred             CccCceeCCccCcCCCCCCCCCCc
Q 007973          552 REKHTVHCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       552 ~~k~~~~Cs~C~~~gHn~~tC~~~  575 (583)
                      .+++...|-+|++.||-++.||.+
T Consensus         8 g~~~~~~C~~Cg~~GH~a~~C~~~   31 (55)
T 1a1t_A            8 NQRKTVKCFNCGKEGHIAKNCRAP   31 (55)
T ss_dssp             GGGGTCBCTTTCCBSSCGGGCSSC
T ss_pred             CCCCCcceeeeCCCCcChhhcCCC
Confidence            345677899999999999999986

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.83  E-value=0.83  Score=32.67  Aligned_cols=22  Identities=18%  Similarity=0.558  Sum_probs=17.6

Q ss_pred             CceeCCccCcCCCCCCCCCCcc
Q 007973          555 HTVHCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       555 ~~~~Cs~C~~~gHn~~tC~~~~  576 (583)
                      +...|-+|++.||-.+.||.+.
T Consensus        28 ~~~~C~~Cg~~GH~ar~Cp~~~   49 (63)
T 2cqf_A           28 QPKKCHFCQSISHMVASCPLKA   49 (63)
T ss_dssp             CSSCCTTTCCSSSCTTTCTGGG
T ss_pred             CCCccCCcCCcCCccCcCCCcc
Confidence            4677888888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	583
d1nc8a_	29	HIV nucleocapsid {Human immunodeficiency virus typ	97.23
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	95.29
d1dsqa_	26	Nucleic acid binding protein p14 {Mouse mammary tu	93.63
d2exfa1	42	HIV nucleocapsid {Human immunodeficiency virus typ	93.61
d2exfa1	42	HIV nucleocapsid {Human immunodeficiency virus typ	90.94
d1a6bb_	40	Zinc finger protein ncp10 {Moloney murine leukemia	88.04

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=97.23  E-value=5.9e-05  Score=41.46  Aligned_cols=25  Identities=24%  Similarity=0.744  Sum_probs=22.4

Q ss_pred             CccCceeCCccCcCCCCCCCCCCcc
Q 007973          552 REKHTVHCSRCNQTGHYKTTCKAEI  576 (583)
Q Consensus       552 ~~k~~~~Cs~C~~~gHn~~tC~~~~  576 (583)
                      +++++++|-+||+.||..+.|.+|-
T Consensus         2 qqr~~ikCfNCGkeGH~ar~CrAPR   26 (29)
T d1nc8a_           2 QQRKVIRCWNCGKEGHSARQCRAPR   26 (29)
T ss_dssp             CCCCCCBCTTTSCBSSCGGGCCSSS
T ss_pred             CCcceeEeecCCccchhhhhccCcc
Confidence            4578899999999999999999874

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.29  E-value=0.019  Score=40.04  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973           42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN   82 (583)
Q Consensus        42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~   82 (583)
                      -|-.++|+..||+++=.+.+..+++...++.+..+|||+..
T Consensus        30 pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          30 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            46679999999999999998887888888899999999764

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

Probab=93.61  E-value=0.014  Score=36.58  Aligned_cols=18  Identities=33%  Similarity=0.918  Sum_probs=11.6

Q ss_pred             eCCccCcCCCCCCCCCCc
Q 007973          558 HCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       558 ~Cs~C~~~gHn~~tC~~~  575 (583)
                      +|.+|++.||.++.||.+
T Consensus         3 ~C~~Cg~~GH~~~~Cp~~   20 (42)
T d2exfa1           3 KCFNCGKEGHTARNCRAP   20 (42)
T ss_dssp             CCTTTCCSSSCTTTCSSC
T ss_pred             ccccCCCcCcCcccCcCC
Confidence            566666666666666654

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

Probab=90.94  E-value=0.056  Score=33.70  Aligned_cols=20  Identities=25%  Similarity=0.713  Sum_probs=17.8

Q ss_pred             ceeCCccCcCCCCCCCCCCc
Q 007973          556 TVHCSRCNQTGHYKTTCKAE  575 (583)
Q Consensus       556 ~~~Cs~C~~~gHn~~tC~~~  575 (583)
                      ...|-+|++.||-.+.||.+
T Consensus        22 ~~~C~~Cg~~GH~~~~Cp~r   41 (42)
T d2exfa1          22 KKGCWKCGKEGHQMKDCTER   41 (42)
T ss_dssp             CSSCSSSCCSSSCTTTCCSS
T ss_pred             cCccccCCCCCeecccCCCC
Confidence            34699999999999999975

>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: Zinc finger protein ncp10
species: Moloney murine leukemia virus, MoMLV [TaxId: 11801]

Probab=88.04  E-value=0.12  Score=30.41  Aligned_cols=22  Identities=23%  Similarity=0.709  Sum_probs=19.2

Q ss_pred             ceeCCccCcCCCCCCCCCCccc
Q 007973          556 TVHCSRCNQTGHYKTTCKAEIM  577 (583)
Q Consensus       556 ~~~Cs~C~~~gHn~~tC~~~~~  577 (583)
                      +-.|-.|++.||=.+.||++..
T Consensus        10 kDQCAyCke~GHW~~dCPkkpr   31 (40)
T d1a6bb_          10 RDQCAYCKEKGHWAKDCPKKPR   31 (40)
T ss_dssp             SSSCSSSCCTTCCTTSCSSSCC
T ss_pred             chhhHHHhhcCchhhhCccCCC
Confidence            4469999999999999998764